RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8253
         (88 letters)



>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
          project on prote structural and functional analysis,
          structural genomics CON SGC; HET: M3L; 1.58A {Homo
          sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
          3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
          Length = 366

 Score = 85.8 bits (213), Expect = 7e-22
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 4  KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFY 63
          KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +ENFY
Sbjct: 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY 73

Query: 64 TCAWSMDLESGRPLLAVAGSRAVIR 88
          TCAW+ D  +  PLLAVAGSR +IR
Sbjct: 74 TCAWTYDSNTSHPLLAVAGSRGIIR 98


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 0.79
 Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 42/87 (48%)

Query: 24   QPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENF---------------YT---- 64
            QP +         + +E                D++                  Y     
Sbjct: 1733 QPALTLM----EKAAFE----------------DLKSKGLIPADATFAGHSLGEYAALAS 1772

Query: 65   CAWSMDLESGRPLLAVAG---SRAVIR 88
             A  M +ES   ++   G     AV R
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPR 1799



 Score = 24.6 bits (53), Expect = 6.2
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 12/49 (24%)

Query: 9   QPLFGAQF--------NHLLKDDQPRIFATVGSNRVSIYECPDGGSIKL 49
           +  F  +F        +HLL      I   +  N VS     +   I++
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF----NAKDIQI 457


>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
           thiamine diphosphate-dependent enzyme, alpha-beta fold;
           HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
           3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
          Length = 845

 Score = 25.4 bits (55), Expect = 3.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 4   KEDHGQPLFGAQFNHLLKDDQPRIFATVG 32
           +E++ + L   +F  L   D+P +FA   
Sbjct: 703 RENNDEALTDEEFTELFTADKPVLFAYHS 731


>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC,
           essential gene, amino-acid biosynthesis, arginine
           biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella
           flexneri} PDB: 2g17_A
          Length = 337

 Score = 24.4 bits (54), Expect = 5.4
 Identities = 6/32 (18%), Positives = 8/32 (25%)

Query: 16  FNHLLKDDQPRIFATVGSNRVSIYECPDGGSI 47
              L     P +   VG     I     G  +
Sbjct: 272 LVRLYDKGVPALKNVVGLPFCDIGFAVQGEHL 303


>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
           FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
           3nyf_A* 3sm8_A*
          Length = 381

 Score = 24.5 bits (54), Expect = 5.7
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 8/57 (14%)

Query: 37  SIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGR------PLLAVAGSRAVI 87
           S Y  PD G   LL   A+ D  E        +D+ +G         L +       
Sbjct: 253 SFYLKPDAG--MLLGSPANADPVEAHDVQPEQLDIATGMYLIEEATTLTIRRPEHTW 307


>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
           hydrolase; HET: PE4; 1.76A {Thermobifida alba}
          Length = 306

 Score = 24.3 bits (52), Expect = 6.0
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 17  NHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD---LES 73
           +++L D    +   + ++R+++     GG   L      PD++       W ++    + 
Sbjct: 150 DYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPDLKAAIPLTPWHLNKSWRDI 209

Query: 74  GRPLLAVAGSR 84
             P L +    
Sbjct: 210 TVPTLIIGAEY 220


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,382,110
Number of extensions: 69920
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 7
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)