RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8253
         (88 letters)



>d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate
           reductase ArgC {Salmonella typhimurium [TaxId: 90371]}
          Length = 155

 Score = 27.1 bits (59), Expect = 0.26
 Identities = 6/33 (18%), Positives = 8/33 (24%)

Query: 15  QFNHLLKDDQPRIFATVGSNRVSIYECPDGGSI 47
               L     P +   VG     I     G  +
Sbjct: 115 PLVRLYDKGVPALKNVVGLPFCDIGFAVQGEHL 147


>d2bjra2 b.169.1.1 (A:185-368) Sperm motility protein MFP2 {Pig
          roundworm (Ascaris suum), isoform B [TaxId: 6253]}
          Length = 184

 Score = 23.3 bits (50), Expect = 5.6
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 7  HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQ 51
           G+P+ G  +N     D  +I A  G      Y     GSI++L 
Sbjct: 52 SGEPVMGRIWN-----DGGKIAACFGWGGH-EY-RQKIGSIQILY 89


>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog
          {Lactococcus lactis, DpsB [TaxId: 1358]}
          Length = 171

 Score = 22.8 bits (49), Expect = 6.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 6  DHGQPLFGAQFNHLLKD 22
          DH +P  GA   H+L +
Sbjct: 19 DHHKPTAGAMLGHVLSN 35


>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 137

 Score = 22.8 bits (49), Expect = 6.3
 Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 10/60 (16%)

Query: 5   EDHGQPLFGAQFNHLLKDDQPRI------FATVGSNRVS----IYECPDGGSIKLLQCYA 54
           ED  Q +   +    L + QPR       +             I+  P G   +    YA
Sbjct: 41  EDELQNISPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYA 100


>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 337

 Score = 22.8 bits (47), Expect = 8.6
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 3   HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENF 62
           +  +HG+ +     ++       R   T G   V +++    G+   +      + +   
Sbjct: 46  NTLNHGEVVCAVTISN-----PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYI 100

Query: 63  YTCAWSMD 70
            +C    D
Sbjct: 101 RSCKLLPD 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 339,546
Number of extensions: 13609
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 6
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)