BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8255
(117 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328721670|ref|XP_001951521.2| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 1
[Acyrthosiphon pisum]
Length = 416
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 62/84 (73%), Positives = 65/84 (77%), Gaps = 13/84 (15%)
Query: 45 RSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVP 93
RSRS+SP K KSRRRK SLYWDVPPPGFEH++P QYKAMQAA AVP
Sbjct: 32 RSRSKSP--KNKSRRRKPSLYWDVPPPGFEHIAPLQYKAMQAAGQIPANTMPDTPQTAVP 89
Query: 94 VVGSTITRQARRLYVGNIPFGVTE 117
VVGSTITRQARRLYVGNIPFGVTE
Sbjct: 90 VVGSTITRQARRLYVGNIPFGVTE 113
>gi|193629757|ref|XP_001950852.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Acyrthosiphon
pisum]
Length = 446
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 62/84 (73%), Positives = 65/84 (77%), Gaps = 13/84 (15%)
Query: 45 RSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVP 93
RSRS+SP K KSRRRK SLYWDVPPPGFEH++P QYKAMQAA AVP
Sbjct: 48 RSRSKSP--KNKSRRRKPSLYWDVPPPGFEHIAPLQYKAMQAAGQIPANTMPDTPQTAVP 105
Query: 94 VVGSTITRQARRLYVGNIPFGVTE 117
VVGSTITRQARRLYVGNIPFGVTE
Sbjct: 106 VVGSTITRQARRLYVGNIPFGVTE 129
>gi|328721668|ref|XP_003247369.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 2
[Acyrthosiphon pisum]
Length = 451
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 79/134 (58%), Positives = 91/134 (67%), Gaps = 17/134 (12%)
Query: 1 MGEDRDKDR------ERDRRRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDK 54
MGED++++R ERD+ R + ++RSRSRDR R + + R R RSRS K
Sbjct: 1 MGEDKERERDRGERGERDKERDKERGERRRRSRSRDRERHRRHRSRSREGRKRSRSKSPK 60
Query: 55 TKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQA 103
KSRRRK SLYWDVPPPGFEH++P QYKAMQAA AVPVVGSTITRQA
Sbjct: 61 NKSRRRKPSLYWDVPPPGFEHIAPLQYKAMQAAGQIPANTMPDTPQTAVPVVGSTITRQA 120
Query: 104 RRLYVGNIPFGVTE 117
RRLYVGNIPFGVTE
Sbjct: 121 RRLYVGNIPFGVTE 134
>gi|312372039|gb|EFR20089.1| hypothetical protein AND_20681 [Anopheles darlingi]
Length = 384
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 60/78 (76%), Gaps = 11/78 (14%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTI 99
P K +SRRRK SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTI
Sbjct: 78 PYRKNRSRRRKPSLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTI 137
Query: 100 TRQARRLYVGNIPFGVTE 117
TRQARRLYVGNIPFGVTE
Sbjct: 138 TRQARRLYVGNIPFGVTE 155
>gi|347968827|ref|XP_311994.4| AGAP002908-PA [Anopheles gambiae str. PEST]
gi|333467820|gb|EAA08228.4| AGAP002908-PA [Anopheles gambiae str. PEST]
Length = 446
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 60/78 (76%), Gaps = 11/78 (14%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTI 99
P K +SRRRK SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTI
Sbjct: 61 PYRKHRSRRRKPSLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTI 120
Query: 100 TRQARRLYVGNIPFGVTE 117
TRQARRLYVGNIPFGVTE
Sbjct: 121 TRQARRLYVGNIPFGVTE 138
>gi|345480698|ref|XP_001604333.2| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Nasonia
vitripennis]
Length = 455
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 57/79 (72%), Positives = 60/79 (75%), Gaps = 11/79 (13%)
Query: 50 SPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGST 98
SP+ SRRRK SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGST
Sbjct: 79 SPKKSRNSRRRKLSLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGST 138
Query: 99 ITRQARRLYVGNIPFGVTE 117
ITRQARRLYVGNIPFGVTE
Sbjct: 139 ITRQARRLYVGNIPFGVTE 157
>gi|95103124|gb|ABF51503.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 2
[Bombyx mori]
Length = 306
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 57/72 (79%), Gaps = 11/72 (15%)
Query: 57 SRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARR 105
SRRRK SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARR
Sbjct: 41 SRRRKPSLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARR 100
Query: 106 LYVGNIPFGVTE 117
LYVGNIPFGVTE
Sbjct: 101 LYVGNIPFGVTE 112
>gi|157132061|ref|XP_001662443.1| splicing factor u2af large subunit [Aedes aegypti]
gi|108881728|gb|EAT45953.1| AAEL002818-PA [Aedes aegypti]
Length = 418
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/78 (73%), Positives = 60/78 (76%), Gaps = 11/78 (14%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTI 99
P K +SRRRK SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTI
Sbjct: 33 PYRKGRSRRRKPSLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTI 92
Query: 100 TRQARRLYVGNIPFGVTE 117
TRQARRLYVGNIPFGVTE
Sbjct: 93 TRQARRLYVGNIPFGVTE 110
>gi|170054347|ref|XP_001863087.1| splicing factor u2af large subunit [Culex quinquefasciatus]
gi|167874693|gb|EDS38076.1| splicing factor u2af large subunit [Culex quinquefasciatus]
Length = 438
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/78 (73%), Positives = 60/78 (76%), Gaps = 11/78 (14%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTI 99
P K +SRRRK SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTI
Sbjct: 53 PYRKGRSRRRKPSLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTI 112
Query: 100 TRQARRLYVGNIPFGVTE 117
TRQARRLYVGNIPFGVTE
Sbjct: 113 TRQARRLYVGNIPFGVTE 130
>gi|270011684|gb|EFA08132.1| hypothetical protein TcasGA2_TC005736 [Tribolium castaneum]
Length = 432
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 70/130 (53%), Positives = 81/130 (62%), Gaps = 13/130 (10%)
Query: 1 MGEDRD-KDRERDR-RRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSR 58
MGE++D K+ ER+R R R ++R R + R + R K+ SR
Sbjct: 1 MGEEKDGKNNERERSRERGDREKDRRRRSRSREHRRRSRSRSRDRRRKSRSTSRHKSHSR 60
Query: 59 RRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLY 107
RRK SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLY
Sbjct: 61 RRKPSLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLY 120
Query: 108 VGNIPFGVTE 117
VGNIPFGVTE
Sbjct: 121 VGNIPFGVTE 130
>gi|170053756|ref|XP_001862821.1| splicing factor U2AF 50 kDa subunit [Culex quinquefasciatus]
gi|167874130|gb|EDS37513.1| splicing factor U2AF 50 kDa subunit [Culex quinquefasciatus]
Length = 382
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 57/78 (73%), Positives = 60/78 (76%), Gaps = 11/78 (14%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTI 99
P K +SRRRK SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTI
Sbjct: 67 PYRKGRSRRRKPSLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTI 126
Query: 100 TRQARRLYVGNIPFGVTE 117
TRQARRLYVGNIPFGVTE
Sbjct: 127 TRQARRLYVGNIPFGVTE 144
>gi|114052735|ref|NP_001040494.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 [Bombyx mori]
gi|95103122|gb|ABF51502.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 1
[Bombyx mori]
Length = 417
Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats.
Identities = 55/73 (75%), Positives = 58/73 (79%), Gaps = 11/73 (15%)
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQAR 104
+SRRRK SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQAR
Sbjct: 40 RSRRRKPSLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAR 99
Query: 105 RLYVGNIPFGVTE 117
RLYVGNIPFGVTE
Sbjct: 100 RLYVGNIPFGVTE 112
>gi|348510223|ref|XP_003442645.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Oreochromis niloticus]
Length = 467
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 87/162 (53%), Gaps = 56/162 (34%)
Query: 1 MGEDRDKDRERDRRRRSRSRDHKKRSRS----RDRRSRSRSKDKKRAA------------ 44
+ E+R DRER+R HKKRSRS R + RS SKD+ +
Sbjct: 11 LSENRQADRERER--------HKKRSRSGSPGRGDKHRSWSKDRGSRSREKRSRSRDRKS 62
Query: 45 ----------RSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAA------- 87
+ S SPR ++R+++ YWDVPPPGFEH++P QYKAMQAA
Sbjct: 63 RDRRSSSRDHKKHSHSPR---RTRKKRTCKYWDVPPPGFEHITPMQYKAMQAAGQIPTIA 119
Query: 88 ---------AAAA---VPVVGSTITRQARRLYVGNIPFGVTE 117
AAA VP+VGS +TRQARRLYVGNIPFGVTE
Sbjct: 120 LLATSTTTGVAAAPTQVPIVGSQMTRQARRLYVGNIPFGVTE 161
>gi|66520699|ref|XP_623055.1| PREDICTED: splicing factor U2AF 50 kDa subunit [Apis mellifera]
Length = 432
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/67 (76%), Positives = 53/67 (79%), Gaps = 11/67 (16%)
Query: 62 ASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGN 110
ASLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGN
Sbjct: 66 ASLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGN 125
Query: 111 IPFGVTE 117
IPFGVTE
Sbjct: 126 IPFGVTE 132
>gi|380016747|ref|XP_003692335.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Apis florea]
Length = 428
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/67 (76%), Positives = 53/67 (79%), Gaps = 11/67 (16%)
Query: 62 ASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGN 110
ASLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGN
Sbjct: 66 ASLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGN 125
Query: 111 IPFGVTE 117
IPFGVTE
Sbjct: 126 IPFGVTE 132
>gi|242019185|ref|XP_002430045.1| Splicing factor U2AF 50 kDa subunit, putative [Pediculus humanus
corporis]
gi|212515110|gb|EEB17307.1| Splicing factor U2AF 50 kDa subunit, putative [Pediculus humanus
corporis]
Length = 445
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/66 (75%), Positives = 52/66 (78%), Gaps = 11/66 (16%)
Query: 63 SLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGNI 111
SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGNI
Sbjct: 75 SLYWDVPPPGFEHITPLQYKAMQAAGQIPANVVADTPQAAVPVVGSTITRQARRLYVGNI 134
Query: 112 PFGVTE 117
PFGVTE
Sbjct: 135 PFGVTE 140
>gi|91088649|ref|XP_974465.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor 2 [Tribolium castaneum]
Length = 450
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/126 (51%), Positives = 76/126 (60%), Gaps = 12/126 (9%)
Query: 3 EDRDKDRERDRRRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKA 62
+ ++ +RER R R ++R R + R + R K+ SRRRK
Sbjct: 24 DGKNNERERS-RERGDREKDRRRRSRSREHRRRSRSRSRDRRRKSRSTSRHKSHSRRRKP 82
Query: 63 SLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGNI 111
SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGNI
Sbjct: 83 SLYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNI 142
Query: 112 PFGVTE 117
PFGVTE
Sbjct: 143 PFGVTE 148
>gi|17136764|ref|NP_476891.1| U2 small nuclear riboprotein auxiliary factor 50, isoform A
[Drosophila melanogaster]
gi|386764552|ref|NP_001245710.1| U2 small nuclear riboprotein auxiliary factor 50, isoform D
[Drosophila melanogaster]
gi|195351420|ref|XP_002042232.1| GM13406 [Drosophila sechellia]
gi|195479195|ref|XP_002100800.1| GE15975 [Drosophila yakuba]
gi|195555160|ref|XP_002077042.1| GD24494 [Drosophila simulans]
gi|4033485|sp|Q24562.1|U2AF2_DROME RecName: Full=Splicing factor U2AF 50 kDa subunit; AltName: Full=U2
auxiliary factor 50 kDa subunit; AltName: Full=U2 snRNP
auxiliary factor large subunit
gi|349761|gb|AAA03548.1| RNA binding protein [Drosophila melanogaster]
gi|7293214|gb|AAF48596.1| U2 small nuclear riboprotein auxiliary factor 50, isoform A
[Drosophila melanogaster]
gi|17861976|gb|AAL39465.1| LD03714p [Drosophila melanogaster]
gi|194124075|gb|EDW46118.1| GM13406 [Drosophila sechellia]
gi|194188324|gb|EDX01908.1| GE15975 [Drosophila yakuba]
gi|194203060|gb|EDX16636.1| GD24494 [Drosophila simulans]
gi|220943258|gb|ACL84172.1| U2af50-PA [synthetic construct]
gi|220953438|gb|ACL89262.1| U2af50-PA [synthetic construct]
gi|383293440|gb|AFH07423.1| U2 small nuclear riboprotein auxiliary factor 50, isoform D
[Drosophila melanogaster]
Length = 416
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/70 (72%), Positives = 54/70 (77%), Gaps = 11/70 (15%)
Query: 59 RRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLY 107
RRK SLYWDVPPPGFEH++P QYKAMQA+ AVPVVGSTITRQARRLY
Sbjct: 37 RRKPSLYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLY 96
Query: 108 VGNIPFGVTE 117
VGNIPFGVTE
Sbjct: 97 VGNIPFGVTE 106
>gi|194893848|ref|XP_001977952.1| GG19328 [Drosophila erecta]
gi|190649601|gb|EDV46879.1| GG19328 [Drosophila erecta]
Length = 416
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/70 (72%), Positives = 54/70 (77%), Gaps = 11/70 (15%)
Query: 59 RRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLY 107
RRK SLYWDVPPPGFEH++P QYKAMQA+ AVPVVGSTITRQARRLY
Sbjct: 37 RRKPSLYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLY 96
Query: 108 VGNIPFGVTE 117
VGNIPFGVTE
Sbjct: 97 VGNIPFGVTE 106
>gi|289741197|gb|ADD19346.1| splicing factor U2AF large subunit [Glossina morsitans morsitans]
Length = 423
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/68 (75%), Positives = 53/68 (77%), Gaps = 11/68 (16%)
Query: 61 KASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVG 109
K SLYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVG
Sbjct: 47 KPSLYWDVPPPGFEHITPLQYKAMQAAGQIPANALPEIPQAAVPVVGSTITRQARRLYVG 106
Query: 110 NIPFGVTE 117
NIPFGVTE
Sbjct: 107 NIPFGVTE 114
>gi|194770152|ref|XP_001967161.1| GF19596 [Drosophila ananassae]
gi|190619281|gb|EDV34805.1| GF19596 [Drosophila ananassae]
Length = 416
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/70 (72%), Positives = 54/70 (77%), Gaps = 11/70 (15%)
Query: 59 RRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLY 107
RRK SLYWDVPPPGFEH++P QYKAMQA+ AVPVVGSTITRQARRLY
Sbjct: 37 RRKPSLYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLY 96
Query: 108 VGNIPFGVTE 117
VGNIPFGVTE
Sbjct: 97 VGNIPFGVTE 106
>gi|195042782|ref|XP_001991497.1| GH12033 [Drosophila grimshawi]
gi|195134983|ref|XP_002011915.1| GI14308 [Drosophila mojavensis]
gi|193901255|gb|EDW00122.1| GH12033 [Drosophila grimshawi]
gi|193909169|gb|EDW08036.1| GI14308 [Drosophila mojavensis]
Length = 416
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/70 (72%), Positives = 54/70 (77%), Gaps = 11/70 (15%)
Query: 59 RRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLY 107
RRK SLYWDVPPPGFEH++P QYKAMQA+ AVPVVGSTITRQARRLY
Sbjct: 37 RRKPSLYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLY 96
Query: 108 VGNIPFGVTE 117
VGNIPFGVTE
Sbjct: 97 VGNIPFGVTE 106
>gi|332375140|gb|AEE62711.1| unknown [Dendroctonus ponderosae]
Length = 374
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 71/125 (56%), Positives = 85/125 (68%), Gaps = 19/125 (15%)
Query: 4 DRDKDRERDRRRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKAS 63
DR+++R+ ++D ++RSRSR+ R RSRS+ ++R K SRRRK S
Sbjct: 15 DRNRERD--------TKDRRRRSRSREHRRRSRSRSRERRRSRSRSPRGHKGHSRRRKPS 66
Query: 64 LYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGNIP 112
LYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGNIP
Sbjct: 67 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 126
Query: 113 FGVTE 117
FGVTE
Sbjct: 127 FGVTE 131
>gi|195393580|ref|XP_002055432.1| GJ19364 [Drosophila virilis]
gi|194149942|gb|EDW65633.1| GJ19364 [Drosophila virilis]
Length = 476
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 51/70 (72%), Positives = 54/70 (77%), Gaps = 11/70 (15%)
Query: 59 RRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLY 107
RRK SLYWDVPPPGFEH++P QYKAMQA+ AVPVVGSTITRQARRLY
Sbjct: 37 RRKPSLYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLY 96
Query: 108 VGNIPFGVTE 117
VGNIPFGVTE
Sbjct: 97 VGNIPFGVTE 106
>gi|307176032|gb|EFN65791.1| Splicing factor U2AF 50 kDa subunit [Camponotus floridanus]
Length = 432
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 49/65 (75%), Positives = 51/65 (78%), Gaps = 11/65 (16%)
Query: 64 LYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGNIP 112
LYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGNIP
Sbjct: 68 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 127
Query: 113 FGVTE 117
FGVTE
Sbjct: 128 FGVTE 132
>gi|383854116|ref|XP_003702568.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Megachile
rotundata]
Length = 432
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 49/65 (75%), Positives = 51/65 (78%), Gaps = 11/65 (16%)
Query: 64 LYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGNIP 112
LYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGNIP
Sbjct: 68 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 127
Query: 113 FGVTE 117
FGVTE
Sbjct: 128 FGVTE 132
>gi|340715832|ref|XP_003396412.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Bombus
terrestris]
gi|350417884|ref|XP_003491627.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 1
[Bombus impatiens]
Length = 432
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 49/65 (75%), Positives = 51/65 (78%), Gaps = 11/65 (16%)
Query: 64 LYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGNIP 112
LYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGNIP
Sbjct: 68 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 127
Query: 113 FGVTE 117
FGVTE
Sbjct: 128 FGVTE 132
>gi|350417886|ref|XP_003491628.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform 2
[Bombus impatiens]
Length = 428
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 49/65 (75%), Positives = 51/65 (78%), Gaps = 11/65 (16%)
Query: 64 LYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGNIP 112
LYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGNIP
Sbjct: 68 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 127
Query: 113 FGVTE 117
FGVTE
Sbjct: 128 FGVTE 132
>gi|389610875|dbj|BAM19048.1| U2 small nuclear riboprotein auxiliary factor 50 [Papilio polytes]
Length = 422
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/65 (75%), Positives = 51/65 (78%), Gaps = 11/65 (16%)
Query: 64 LYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGNIP 112
LYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGNIP
Sbjct: 48 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 107
Query: 113 FGVTE 117
FGVTE
Sbjct: 108 FGVTE 112
>gi|307195151|gb|EFN77144.1| Splicing factor U2AF 50 kDa subunit [Harpegnathos saltator]
Length = 402
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/65 (75%), Positives = 51/65 (78%), Gaps = 11/65 (16%)
Query: 64 LYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLYVGNIP 112
LYWDVPPPGFEH++P QYKAMQAA AAVPVVGSTITRQARRLYVGNIP
Sbjct: 42 LYWDVPPPGFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIP 101
Query: 113 FGVTE 117
FGVTE
Sbjct: 102 FGVTE 106
>gi|344277364|ref|XP_003410472.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Loxodonta
africana]
Length = 471
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 86/145 (59%), Gaps = 36/145 (24%)
Query: 9 RERDRRRR------SRSRDHKKRSRSRDRRS---RSRSKDKKRAARSRSRSPRDKTKS-- 57
RE + R R SR+RD K+RS+SRDRR+ R+ +D++R ++ SR ++
Sbjct: 18 REEENRHRKRSHSHSRNRDRKRRSQSRDRRNHDQRNDPRDQRRRSKPWSRDAEEERGGLI 77
Query: 58 ------RRRKASLYWDVPPPGFEHVSPSQYKAMQAAA---AAA----------------V 92
R+RK YWDVPPPGFEH++P QYKAMQAA A A V
Sbjct: 78 PSARHDRKRKVHKYWDVPPPGFEHITPMQYKAMQAAGQIPATAFLPTMTPDGLAMIPTPV 137
Query: 93 PVVGSTITRQARRLYVGNIPFGVTE 117
P+ GS +TR+ARRLYVGNIPFG+TE
Sbjct: 138 PMGGSQMTRKARRLYVGNIPFGITE 162
>gi|351710523|gb|EHB13442.1| Splicing factor U2AF 65 kDa subunit [Heterocephalus glaber]
Length = 904
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 60/95 (63%), Gaps = 22/95 (23%)
Query: 42 RAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA---AAA------- 91
R A RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA A A
Sbjct: 144 RTAAQSCRSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTP 200
Query: 92 ---------VPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 201 DGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 235
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 30/38 (78%), Gaps = 3/38 (7%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQA 86
RSPR + K + RK YWDVPPPGFEH++P QYKAMQA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQA 112
>gi|348510219|ref|XP_003442643.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Oreochromis niloticus]
Length = 466
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 77/141 (54%), Gaps = 48/141 (34%)
Query: 22 HKKRSRS----RDRRSRSRSKDKKRAA----------------------RSRSRSPRDKT 55
HKKRSRS R + RS SKD+ + + S SPR
Sbjct: 23 HKKRSRSGSPGRGDKHRSWSKDRGSRSREKRSRSRDRKSRDRRSSSRDHKKHSHSPR--- 79
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAA----------------AAAA---VPVVG 96
++R+++ YWDVPPPGFEH++P QYKAMQAA AAA VP+VG
Sbjct: 80 RTRKKRTCKYWDVPPPGFEHITPMQYKAMQAAGQIPTIALLATSTTTGVAAAPTQVPIVG 139
Query: 97 STITRQARRLYVGNIPFGVTE 117
S +TRQARRLYVGNIPFGVTE
Sbjct: 140 SQMTRQARRLYVGNIPFGVTE 160
>gi|348510221|ref|XP_003442644.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Oreochromis niloticus]
Length = 467
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 77/141 (54%), Gaps = 48/141 (34%)
Query: 22 HKKRSRS----RDRRSRSRSKDKKRAA----------------------RSRSRSPRDKT 55
HKKRSRS R + RS SKD+ + + S SPR
Sbjct: 23 HKKRSRSGSPGRGDKHRSWSKDRGSRSREKRSRSRDRKSRDRRSSSRDHKKHSHSPR--- 79
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAA----------------AAAA---VPVVG 96
++R+++ YWDVPPPGFEH++P QYKAMQAA AAA VP+VG
Sbjct: 80 RTRKKRTCKYWDVPPPGFEHITPMQYKAMQAAGQIPTIALLATSTTTGVAAAPTQVPIVG 139
Query: 97 STITRQARRLYVGNIPFGVTE 117
S +TRQARRLYVGNIPFGVTE
Sbjct: 140 SQMTRQARRLYVGNIPFGVTE 160
>gi|241166827|ref|XP_002409934.1| splicing factor u2af large subunit, putative [Ixodes scapularis]
gi|215494685|gb|EEC04326.1| splicing factor u2af large subunit, putative [Ixodes scapularis]
Length = 444
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/84 (60%), Positives = 56/84 (66%), Gaps = 17/84 (20%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQ---AAAAAAVPV------------- 94
P KSRRRK SLYWDVPPPGFEH++P QYKAMQ A A + P+
Sbjct: 46 PGGPKKSRRRKPSLYWDVPPPGFEHITPLQYKAMQGEGAPLAGSTPLAPAAIAPVAPAVP 105
Query: 95 -VGSTITRQARRLYVGNIPFGVTE 117
VGSTITRQARRLYVGNIPFG +E
Sbjct: 106 IVGSTITRQARRLYVGNIPFGCSE 129
>gi|297277970|ref|XP_001091568.2| PREDICTED: splicing factor U2AF 65 kDa subunit [Macaca mulatta]
Length = 471
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 61/104 (58%), Gaps = 22/104 (21%)
Query: 33 SRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA---- 88
S+ ++ K RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 58 SKPLTRGAKEEHGGLIRSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPA 114
Query: 89 ---------------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 115 TALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 158
>gi|440900150|gb|ELR51345.1| Splicing factor U2AF 65 kDa subunit, partial [Bos grunniens mutus]
Length = 411
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/104 (51%), Positives = 61/104 (58%), Gaps = 26/104 (25%)
Query: 37 SKDKKRAARSRS----RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA---- 88
SK R A+ RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 1 SKPLTRGAKEEHGGLIRSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPA 57
Query: 89 ---------------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 58 TALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 101
>gi|297302874|ref|XP_002806072.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial
[Macaca mulatta]
Length = 190
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|63101571|gb|AAH94451.1| U2af2 protein, partial [Mus musculus]
Length = 403
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 10 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 66
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 67 TPVPVVGSQMTRQARRLYVGNIPFGITE 94
>gi|358417046|ref|XP_001256277.3| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Bos taurus]
Length = 330
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|355727237|gb|AES09128.1| U2 small nuclear RNA auxiliary factor 2 [Mustela putorius furo]
Length = 301
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 65 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 121
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 122 TPVPVVGSQMTRQARRLYVGNIPFGITE 149
>gi|402906865|ref|XP_003916203.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Papio anubis]
Length = 446
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|410903107|ref|XP_003965035.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Takifugu rubripes]
Length = 461
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 56/93 (60%), Gaps = 19/93 (20%)
Query: 44 ARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA--------------- 88
A R S +SR+++ YWDVPPPGFEHV+P QYKAMQAA
Sbjct: 63 AHLRCPSSHSPKRSRKKRGCRYWDVPPPGFEHVTPMQYKAMQAAGQIPTIALLATGAATG 122
Query: 89 ----AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFGVTE
Sbjct: 123 AAAAPTQVPVVGSQMTRQARRLYVGNIPFGVTE 155
>gi|426390304|ref|XP_004061546.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Gorilla gorilla
gorilla]
Length = 319
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|410903105|ref|XP_003965034.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Takifugu rubripes]
Length = 454
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 56/93 (60%), Gaps = 19/93 (20%)
Query: 44 ARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA--------------- 88
A R S +SR+++ YWDVPPPGFEHV+P QYKAMQAA
Sbjct: 56 AHLRCPSSHSPKRSRKKRGCRYWDVPPPGFEHVTPMQYKAMQAAGQIPTIALLATGAATG 115
Query: 89 ----AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFGVTE
Sbjct: 116 AAAAPTQVPVVGSQMTRQARRLYVGNIPFGVTE 148
>gi|332026432|gb|EGI66560.1| Splicing factor U2AF 50 kDa subunit [Acromyrmex echinatior]
Length = 435
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/72 (68%), Positives = 51/72 (70%), Gaps = 18/72 (25%)
Query: 64 LYWDVPPPGFEHVSPSQ-------YKAMQAAA-----------AAAVPVVGSTITRQARR 105
LYWDVPPPGFEH++P Q YKAMQAA AAVPVVGSTITRQARR
Sbjct: 68 LYWDVPPPGFEHITPLQARLLILYYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARR 127
Query: 106 LYVGNIPFGVTE 117
LYVGNIPFGVTE
Sbjct: 128 LYVGNIPFGVTE 139
>gi|291190480|ref|NP_001167275.1| Splicing factor U2AF 65 kDa subunit [Salmo salar]
gi|223648990|gb|ACN11253.1| Splicing factor U2AF 65 kDa subunit [Salmo salar]
Length = 474
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 65/113 (57%), Gaps = 23/113 (20%)
Query: 25 RSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAM 84
+ R R RRS K + SRS + + K + RK YWDVP PGFEH++P QYKAM
Sbjct: 55 KERRRHRRSIQTQKQSQETVVSRSPALHREKKKKVRK---YWDVPAPGFEHITPLQYKAM 111
Query: 85 QAA--------------------AAAAVPVVGSTITRQARRLYVGNIPFGVTE 117
QAA A +VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 112 QAAGQIPATALLPTMITPEGLPPAPTSVPVVGSQMTRQARRLYVGNIPFGITE 164
>gi|334349754|ref|XP_001379564.2| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Monodelphis
domestica]
Length = 348
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKIRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|391337926|ref|XP_003743315.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Metaseiulus
occidentalis]
Length = 430
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 54/77 (70%), Gaps = 15/77 (19%)
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA---------------AAAVPVVGSTIT 100
K+RR+K SLYWDVP PGFEH++P QYKAMQA+ + PV+GSTIT
Sbjct: 50 KARRKKPSLYWDVPAPGFEHITPLQYKAMQASGQIPATLLAPPITTNHQPSQPVIGSTIT 109
Query: 101 RQARRLYVGNIPFGVTE 117
RQARRLYVGNIPFG TE
Sbjct: 110 RQARRLYVGNIPFGCTE 126
>gi|410903103|ref|XP_003965033.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Takifugu rubripes]
Length = 446
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 52/80 (65%), Gaps = 19/80 (23%)
Query: 57 SRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGS 97
SR+++ YWDVPPPGFEHV+P QYKAMQAA VPVVGS
Sbjct: 61 SRKKRGCRYWDVPPPGFEHVTPMQYKAMQAAGQIPTIALLATGAATGAAAAPTQVPVVGS 120
Query: 98 TITRQARRLYVGNIPFGVTE 117
+TRQARRLYVGNIPFGVTE
Sbjct: 121 QMTRQARRLYVGNIPFGVTE 140
>gi|197692223|dbj|BAG70075.1| U2 small nuclear RNA auxiliary factor 2 isoform b [Homo sapiens]
gi|197692475|dbj|BAG70201.1| U2 small nuclear RNA auxiliary factor 2 isoform b [Homo sapiens]
Length = 471
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|115496604|ref|NP_001068804.1| splicing factor U2AF 65 kDa subunit [Bos taurus]
gi|89994093|gb|AAI14161.1| U2 small nuclear RNA auxiliary factor 2 [Bos taurus]
gi|296477253|tpg|DAA19368.1| TPA: U2 (RNU2) small nuclear RNA auxiliary factor 2 [Bos taurus]
Length = 475
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|410903109|ref|XP_003965036.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 4
[Takifugu rubripes]
Length = 455
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 52/80 (65%), Gaps = 19/80 (23%)
Query: 57 SRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGS 97
SR+++ YWDVPPPGFEHV+P QYKAMQAA VPVVGS
Sbjct: 61 SRKKRGCRYWDVPPPGFEHVTPMQYKAMQAAGQIPTIALLATGAATGAAAAPTQVPVVGS 120
Query: 98 TITRQARRLYVGNIPFGVTE 117
+TRQARRLYVGNIPFGVTE
Sbjct: 121 QMTRQARRLYVGNIPFGVTE 140
>gi|327365322|ref|NP_001192160.1| splicing factor U2AF 65 kDa subunit isoform 1 [Mus musculus]
gi|348551789|ref|XP_003461711.1| PREDICTED: splicing factor U2AF 65 kDa subunit isoform 2 [Cavia
porcellus]
gi|392343893|ref|XP_003748811.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Rattus norvegicus]
gi|136628|sp|P26369.3|U2AF2_MOUSE RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; AltName: Full=U2 snRNP
auxiliary factor large subunit
gi|55101|emb|CAA45874.1| splicing factor U2AF [Mus musculus]
gi|26347321|dbj|BAC37309.1| unnamed protein product [Mus musculus]
Length = 475
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|60279268|ref|NP_001012496.1| splicing factor U2AF 65 kDa subunit isoform b [Homo sapiens]
gi|164565377|ref|NP_598432.2| splicing factor U2AF 65 kDa subunit isoform 2 [Mus musculus]
gi|109461136|ref|XP_001060115.1| PREDICTED: splicing factor U2AF 65 kDa subunit isoform 6 [Rattus
norvegicus]
gi|338709958|ref|XP_001496159.3| PREDICTED: splicing factor U2AF 65 kDa subunit [Equus caballus]
gi|348551787|ref|XP_003461710.1| PREDICTED: splicing factor U2AF 65 kDa subunit isoform 1 [Cavia
porcellus]
gi|359318549|ref|XP_003638845.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Canis lupus
familiaris]
gi|395861318|ref|XP_003802936.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Otolemur garnettii]
gi|397471087|ref|XP_003807136.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Pan paniscus]
gi|403308602|ref|XP_003944746.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Saimiri boliviensis
boliviensis]
gi|14250571|gb|AAH08740.1| U2 small nuclear RNA auxiliary factor 2 [Homo sapiens]
gi|27695339|gb|AAH43071.1| U2af2 protein [Mus musculus]
gi|39644972|gb|AAH30574.1| U2 small nuclear RNA auxiliary factor 2 [Homo sapiens]
gi|119592810|gb|EAW72404.1| U2 (RNU2) small nuclear RNA auxiliary factor 2, isoform CRA_c [Homo
sapiens]
gi|148699339|gb|EDL31286.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2,
isoform CRA_a [Mus musculus]
gi|149016700|gb|EDL75886.1| similar to U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform b
[Rattus norvegicus]
gi|261858294|dbj|BAI45669.1| U2 small nuclear RNA auxiliary factor 2 [synthetic construct]
gi|325463253|gb|ADZ15397.1| U2 small nuclear RNA auxiliary factor 2 [synthetic construct]
gi|380783067|gb|AFE63409.1| splicing factor U2AF 65 kDa subunit isoform b [Macaca mulatta]
gi|389618965|gb|AFK92990.1| U2 small nuclear RNA auxiliary factor 2 [Sus scrofa]
gi|410212802|gb|JAA03620.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410260572|gb|JAA18252.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410291502|gb|JAA24351.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|431902970|gb|ELK09152.1| Splicing factor U2AF 65 kDa subunit [Pteropus alecto]
Length = 471
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA------------------- 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|344270173|ref|XP_003406920.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor U2AF 65 kDa
subunit-like [Loxodonta africana]
Length = 471
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/96 (54%), Positives = 58/96 (60%), Gaps = 22/96 (22%)
Query: 41 KRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA----------- 89
KR RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 70 KREHGGLIRSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMT 126
Query: 90 --------AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 127 PDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|297302956|ref|XP_001119590.2| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial
[Macaca mulatta]
Length = 432
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA------------------- 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|6005926|ref|NP_009210.1| splicing factor U2AF 65 kDa subunit isoform a [Homo sapiens]
gi|267188|sp|P26368.4|U2AF2_HUMAN RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; Short=hU2AF(65);
Short=hU2AF65; AltName: Full=U2 snRNP auxiliary factor
large subunit
gi|37545|emb|CAA45409.1| splicing factor U2AF [Homo sapiens]
gi|380783065|gb|AFE63408.1| splicing factor U2AF 65 kDa subunit isoform a [Macaca mulatta]
gi|410212804|gb|JAA03621.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410260574|gb|JAA18253.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
gi|410291504|gb|JAA24352.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
Length = 475
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA------------------- 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|384939342|gb|AFI33276.1| splicing factor U2AF 65 kDa subunit isoform b [Macaca mulatta]
Length = 471
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA------------------- 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|410351435|gb|JAA42321.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
Length = 471
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 71/119 (59%), Gaps = 22/119 (18%)
Query: 18 RSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVS 77
R+RD + SR R RRS+ ++ K RSPR + K + RK YWDVPPPGFEH++
Sbjct: 47 RNRDQRSASRDRRRRSKPLTRGAKEEHGGLIRSPRHEKKKKVRK---YWDVPPPGFEHIT 103
Query: 78 PSQYKAMQAAA-------------------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
P QYKAMQAA VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 104 PMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|291241059|ref|XP_002740425.1| PREDICTED: U2 (RNU2) small nuclear RNA auxiliary factor 2-like
[Saccoglossus kowalevskii]
Length = 466
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 16/83 (19%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAM----------------QAAAAAAVPV 94
P + +R+K +YWD+PPPGFEH++P QYKAM QAAA + +P+
Sbjct: 71 PSRSARPKRKKPFMYWDIPPPGFEHIAPLQYKAMQGAGQIPQTALENQMAQAAANSNMPI 130
Query: 95 VGSTITRQARRLYVGNIPFGVTE 117
VGS +TRQARRLYVGNIPFGVTE
Sbjct: 131 VGSQMTRQARRLYVGNIPFGVTE 153
>gi|355756173|gb|EHH59920.1| hypothetical protein EGM_10153, partial [Macaca fascicularis]
Length = 442
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA------------------- 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 65 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 121
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 122 TPVPVVGSQMTRQARRLYVGNIPFGITE 149
>gi|384939340|gb|AFI33275.1| splicing factor U2AF 65 kDa subunit isoform a [Macaca mulatta]
Length = 475
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA------------------- 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|355703931|gb|EHH30422.1| hypothetical protein EGK_11092, partial [Macaca mulatta]
Length = 453
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA------------------- 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 65 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 121
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 122 TPVPVVGSQMTRQARRLYVGNIPFGITE 149
>gi|410351437|gb|JAA42322.1| U2 small nuclear RNA auxiliary factor 2 [Pan troglodytes]
Length = 475
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 71/119 (59%), Gaps = 22/119 (18%)
Query: 18 RSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVS 77
R+RD + SR R RRS+ ++ K RSPR + K + RK YWDVPPPGFEH++
Sbjct: 47 RNRDQRSASRDRRRRSKPLTRGAKEEHGGLIRSPRHEKKKKVRK---YWDVPPPGFEHIT 103
Query: 78 PSQYKAMQAAA-------------------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
P QYKAMQAA VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 104 PMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|426244214|ref|XP_004015921.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Ovis aries]
Length = 471
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 60/119 (50%), Positives = 71/119 (59%), Gaps = 22/119 (18%)
Query: 18 RSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVS 77
R+RD + SR R RRS+ ++ K RSPR + K + RK YWDVPPPGFEH++
Sbjct: 48 RNRDQRSASRDRRRRSKPLTRGAKEEHGGLIRSPRHEKKKKVRK---YWDVPPPGFEHIT 104
Query: 78 PSQYKAMQAAA-------------------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
P QYKAMQAA VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 105 PMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 163
>gi|1334149|emb|CAA45875.1| unnamed protein product [Mus musculus]
Length = 492
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 95 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 151
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 152 TPVPVVGSQMTRQARRLYVGNIPFGITE 179
>gi|386764548|ref|NP_001245708.1| U2 small nuclear riboprotein auxiliary factor 50, isoform B
[Drosophila melanogaster]
gi|383293438|gb|AFH07421.1| U2 small nuclear riboprotein auxiliary factor 50, isoform B
[Drosophila melanogaster]
Length = 427
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 51/89 (57%), Positives = 54/89 (60%), Gaps = 30/89 (33%)
Query: 40 KKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA----------- 88
RRK SLYWDVPPPGFEH++P QYKAMQA+
Sbjct: 48 -------------------RRKPSLYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTP 88
Query: 89 AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
AVPVVGSTITRQARRLYVGNIPFGVTE
Sbjct: 89 QTAVPVVGSTITRQARRLYVGNIPFGVTE 117
>gi|45387787|ref|NP_991252.1| U2 small nuclear RNA auxiliary factor 2b [Danio rerio]
gi|41389016|gb|AAH65869.1| U2 small nuclear RNA auxiliary factor 2b [Danio rerio]
Length = 475
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 52/109 (47%), Positives = 64/109 (58%), Gaps = 22/109 (20%)
Query: 28 SRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAA 87
S++RR R + + SRSP + +++K YWDVPPPGFEH++P QYKAMQAA
Sbjct: 60 SKERRHRRSDHTQNHPQENVSRSPH---REKKKKIKKYWDVPPPGFEHITPMQYKAMQAA 116
Query: 88 A-------------------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 117 GQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 165
>gi|228543|prf||1805352A splicing factor U2AF:SUBUNIT=large
Length = 475
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 55/88 (62%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSP + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPLHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|148699340|gb|EDL31287.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2,
isoform CRA_b [Mus musculus]
Length = 356
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|444724150|gb|ELW64768.1| Splicing factor U2AF 65 kDa subunit [Tupaia chinensis]
Length = 447
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/86 (55%), Positives = 54/86 (62%), Gaps = 22/86 (25%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------AAA 91
PR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 56 PRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTP 112
Query: 92 VPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 113 VPVVGSQMTRQARRLYVGNIPFGITE 138
>gi|410982179|ref|XP_003997437.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Felis catus]
Length = 471
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/86 (55%), Positives = 54/86 (62%), Gaps = 22/86 (25%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------AAA 91
PR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 80 PRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTP 136
Query: 92 VPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 137 VPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|348526424|ref|XP_003450719.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Oreochromis niloticus]
Length = 475
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 49/72 (68%), Gaps = 19/72 (26%)
Query: 65 YWDVPPPGFEHVSPSQYKAMQAAA---AAA----------------VPVVGSTITRQARR 105
YWDVPPPGFEH++P QYKAMQAA A A VPVVGS +TRQARR
Sbjct: 95 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 154
Query: 106 LYVGNIPFGVTE 117
LYVGNIPFG+TE
Sbjct: 155 LYVGNIPFGITE 166
>gi|354486866|ref|XP_003505598.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Cricetulus
griseus]
gi|344242983|gb|EGV99086.1| Splicing factor U2AF 65 kDa subunit [Cricetulus griseus]
Length = 469
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/87 (55%), Positives = 55/87 (63%), Gaps = 23/87 (26%)
Query: 50 SPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQA-------------------AAAA 90
SPR + K R+ YWDVPPPGFEH++P QYKAMQA A+
Sbjct: 78 SPRHEKKKVRK----YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTVTSDGLVASPM 133
Query: 91 AVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 134 PVPVVGSQMTRQARRLYVGNIPFGITE 160
>gi|427789501|gb|JAA60202.1| Putative splicing factor u2af large subunit rrm superfamily
[Rhipicephalus pulchellus]
Length = 462
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/105 (47%), Positives = 56/105 (53%), Gaps = 43/105 (40%)
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA--------------------------- 88
KSRRRK S+YWDVPPPGFEH++P QYKAMQA+
Sbjct: 55 KSRRRKPSIYWDVPPPGFEHITPLQYKAMQASGQIPATMLAATGAIATVGGTTTTIGGGG 114
Query: 89 ----------------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
AAVP+VG TITRQARRLYVGNIPFG +E
Sbjct: 115 LGGGGAGPVAQAIIQPPAAVPIVGGTITRQARRLYVGNIPFGCSE 159
>gi|348526426|ref|XP_003450720.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Oreochromis niloticus]
Length = 487
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 49/72 (68%), Gaps = 19/72 (26%)
Query: 65 YWDVPPPGFEHVSPSQYKAMQAAA---AAA----------------VPVVGSTITRQARR 105
YWDVPPPGFEH++P QYKAMQAA A A VPVVGS +TRQARR
Sbjct: 107 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 166
Query: 106 LYVGNIPFGVTE 117
LYVGNIPFG+TE
Sbjct: 167 LYVGNIPFGITE 178
>gi|327280717|ref|XP_003225098.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Anolis carolinensis]
Length = 467
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/79 (55%), Positives = 51/79 (64%), Gaps = 19/79 (24%)
Query: 58 RRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA-------------------AAVPVVGST 98
+++K YWDVPPPGFEH++P QYKAMQAA VPVVGS
Sbjct: 69 KKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQ 128
Query: 99 ITRQARRLYVGNIPFGVTE 117
+TRQARRLYVGNIPFG+TE
Sbjct: 129 MTRQARRLYVGNIPFGITE 147
>gi|309271453|ref|XP_003085312.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Mus musculus]
Length = 730
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 53/88 (60%), Gaps = 23/88 (26%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAAAA----------------- 91
RSP + K R+ YWDVPPPGFEHV+P QYKAMQAA
Sbjct: 338 RSPCHEKKKVRK----YWDVPPPGFEHVTPMQYKAMQAAGQILATALLPTMTPGGLAVTP 393
Query: 92 --VPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVG IPFG+TE
Sbjct: 394 MPVPVVGSQMTRQARRLYVGTIPFGITE 421
>gi|119592808|gb|EAW72402.1| U2 (RNU2) small nuclear RNA auxiliary factor 2, isoform CRA_a [Homo
sapiens]
Length = 376
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|119592809|gb|EAW72403.1| U2 (RNU2) small nuclear RNA auxiliary factor 2, isoform CRA_b [Homo
sapiens]
Length = 356
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 78 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162
>gi|327280715|ref|XP_003225097.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Anolis carolinensis]
Length = 456
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/79 (55%), Positives = 51/79 (64%), Gaps = 19/79 (24%)
Query: 58 RRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGST 98
+++K YWDVPPPGFEH++P QYKAMQAA VPVVGS
Sbjct: 69 KKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQ 128
Query: 99 ITRQARRLYVGNIPFGVTE 117
+TRQARRLYVGNIPFG+TE
Sbjct: 129 MTRQARRLYVGNIPFGITE 147
>gi|62859443|ref|NP_001016998.1| U2 small nuclear RNA auxiliary factor 2 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|89269799|emb|CAJ83531.1| U2 (RNU2) small nuclear RNA auxiliary factor 2 [Xenopus (Silurana)
tropicalis]
gi|115292148|gb|AAI22001.1| U2 small nuclear RNA auxiliary factor 2 [Xenopus (Silurana)
tropicalis]
Length = 465
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/79 (55%), Positives = 51/79 (64%), Gaps = 19/79 (24%)
Query: 58 RRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGST 98
+++K YWDVPPPGFEH++P QYKAMQAA VPVVGS
Sbjct: 69 KKKKIRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQ 128
Query: 99 ITRQARRLYVGNIPFGVTE 117
+TRQARRLYVGNIPFG+TE
Sbjct: 129 MTRQARRLYVGNIPFGITE 147
>gi|390479436|ref|XP_002762565.2| PREDICTED: splicing factor U2AF 65 kDa subunit [Callithrix jacchus]
Length = 453
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/79 (55%), Positives = 51/79 (64%), Gaps = 19/79 (24%)
Query: 58 RRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGST 98
+++K YWDVPPPGFEH++P QYKAMQAA VPVVGS
Sbjct: 69 KKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQ 128
Query: 99 ITRQARRLYVGNIPFGVTE 117
+TRQARRLYVGNIPFG+TE
Sbjct: 129 MTRQARRLYVGNIPFGITE 147
>gi|226478958|emb|CAX72974.1| Splicing factor U2AF 65 kDa subunit [Schistosoma japonicum]
Length = 520
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 66/129 (51%), Gaps = 32/129 (24%)
Query: 14 RRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGF 73
R+RS S H++ S+SR R K ++ +S RSP + + + YWDVPPPGF
Sbjct: 83 RKRSHSHGHRRHSKSRHRDYSGGHKSRRH--QSHHRSPSNSVSAHK-----YWDVPPPGF 135
Query: 74 EHVSPSQYKAMQAAA-------------------------AAAVPVVGSTITRQARRLYV 108
EHV+P+QYKA+Q + VP GS + RQARRLYV
Sbjct: 136 EHVTPAQYKALQTSGQVPVNVYAAGQVPMPVHAPNAPLTLTTNVPFAGSAVCRQARRLYV 195
Query: 109 GNIPFGVTE 117
GNIPF TE
Sbjct: 196 GNIPFTATE 204
>gi|47575746|ref|NP_001001217.1| U2 small nuclear RNA auxiliary factor 2 isoform 2 [Xenopus
(Silurana) tropicalis]
gi|45709722|gb|AAH67966.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
[Xenopus (Silurana) tropicalis]
Length = 456
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/79 (55%), Positives = 51/79 (64%), Gaps = 19/79 (24%)
Query: 58 RRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGST 98
+++K YWDVPPPGFEH++P QYKAMQAA VPVVGS
Sbjct: 69 KKKKIRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQ 128
Query: 99 ITRQARRLYVGNIPFGVTE 117
+TRQARRLYVGNIPFG+TE
Sbjct: 129 MTRQARRLYVGNIPFGITE 147
>gi|432908699|ref|XP_004077990.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Oryzias latipes]
Length = 479
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 52/108 (48%), Positives = 63/108 (58%), Gaps = 22/108 (20%)
Query: 29 RDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA 88
++RR R S + SRSP + +++K YWDVPPPGFEH++P QYKAMQAA
Sbjct: 66 KERRHRRNSPPAYPQENTASRSPH---REKKKKIKKYWDVPPPGFEHITPMQYKAMQAAG 122
Query: 89 -------------------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 123 QIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 170
>gi|148697816|gb|EDL29763.1| mCG68163 [Mus musculus]
Length = 472
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 53/88 (60%), Gaps = 23/88 (26%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA------------------- 89
RSP + K R+ YWDVPPPGFEHV+P QYKAMQAA
Sbjct: 80 RSPCHEKKKVRK----YWDVPPPGFEHVTPMQYKAMQAAGQILATALLPTMTPGGLAVTP 135
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVG IPFG+TE
Sbjct: 136 MPVPVVGSQMTRQARRLYVGTIPFGITE 163
>gi|395529346|ref|XP_003766777.1| PREDICTED: splicing factor U2AF 65 kDa subunit [Sarcophilus
harrisii]
Length = 462
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 77/149 (51%), Gaps = 38/149 (25%)
Query: 4 DRDKDR------------ERDRRRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRS--- 48
+RDK+ +RR + RS R R RSK RAA+
Sbjct: 65 ERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRAAKEEHGGV 124
Query: 49 -RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA------------------- 88
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 125 IRSPRHEKKKKIRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVT 181
Query: 89 AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
A VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 182 PAPVPVVGSQMTRQARRLYVGNIPFGITE 210
>gi|198432986|ref|XP_002130494.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2 isoform 2 [Ciona intestinalis]
Length = 472
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/76 (59%), Positives = 51/76 (67%), Gaps = 14/76 (18%)
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA--------------AAAVPVVGSTITR 101
+ + +KA YWDVPP G+EHV+P QYKAMQAA A VPV GS +TR
Sbjct: 96 EKKPKKAYKYWDVPPVGYEHVTPLQYKAMQAAGQIPLMATSQTMGSITAEVPVAGSQMTR 155
Query: 102 QARRLYVGNIPFGVTE 117
QARRLYVGNIPFGVTE
Sbjct: 156 QARRLYVGNIPFGVTE 171
>gi|147902896|ref|NP_001080595.1| U2 small nuclear RNA auxiliary factor 2 [Xenopus laevis]
gi|111185517|gb|AAH44032.2| U2af2 protein [Xenopus laevis]
Length = 456
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/79 (54%), Positives = 51/79 (64%), Gaps = 19/79 (24%)
Query: 58 RRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGST 98
+++K YWD+PPPGFEH++P QYKAMQAA VPVVGS
Sbjct: 69 KKKKIRKYWDIPPPGFEHITPLQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQ 128
Query: 99 ITRQARRLYVGNIPFGVTE 117
+TRQARRLYVGNIPFG+TE
Sbjct: 129 MTRQARRLYVGNIPFGITE 147
>gi|71480064|ref|NP_001025127.1| U2 small nuclear RNA auxiliary factor 2a [Danio rerio]
gi|68533572|gb|AAH98548.1| U2 small nuclear RNA auxiliary factor 2a [Danio rerio]
Length = 465
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/72 (59%), Positives = 47/72 (65%), Gaps = 19/72 (26%)
Query: 65 YWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGSTITRQARR 105
YWDVPPPGFEH++P QYKAMQAA VPVVGS +TRQARR
Sbjct: 84 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPEGLAVTPTPVPVVGSQMTRQARR 143
Query: 106 LYVGNIPFGVTE 117
LYVGNIPFG+TE
Sbjct: 144 LYVGNIPFGITE 155
>gi|410905623|ref|XP_003966291.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Takifugu
rubripes]
Length = 458
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/72 (59%), Positives = 47/72 (65%), Gaps = 19/72 (26%)
Query: 65 YWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGSTITRQARR 105
YWDVPPPGFEH++P QYKAMQAA VPVVGS +TRQARR
Sbjct: 78 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 137
Query: 106 LYVGNIPFGVTE 117
LYVGNIPFG+TE
Sbjct: 138 LYVGNIPFGITE 149
>gi|47221657|emb|CAF97922.1| unnamed protein product [Tetraodon nigroviridis]
Length = 458
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/72 (59%), Positives = 47/72 (65%), Gaps = 19/72 (26%)
Query: 65 YWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGSTITRQARR 105
YWDVPPPGFEH++P QYKAMQAA VPVVGS +TRQARR
Sbjct: 78 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 137
Query: 106 LYVGNIPFGVTE 117
LYVGNIPFG+TE
Sbjct: 138 LYVGNIPFGITE 149
>gi|432908695|ref|XP_004077988.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 1
[Oryzias latipes]
Length = 458
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 51/97 (52%), Positives = 61/97 (62%), Gaps = 23/97 (23%)
Query: 40 KKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA----------- 88
K+R R R+RSP + +++K YWDVPPPGFEH++P QYKAMQAA
Sbjct: 57 KERRHR-RNRSPH---REKKKKIKKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTM 112
Query: 89 --------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 113 TPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 149
>gi|348526428|ref|XP_003450721.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 3
[Oreochromis niloticus]
Length = 458
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/72 (59%), Positives = 47/72 (65%), Gaps = 19/72 (26%)
Query: 65 YWDVPPPGFEHVSPSQYKAMQAAA-------------------AAAVPVVGSTITRQARR 105
YWDVPPPGFEH++P QYKAMQAA VPVVGS +TRQARR
Sbjct: 78 YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARR 137
Query: 106 LYVGNIPFGVTE 117
LYVGNIPFG+TE
Sbjct: 138 LYVGNIPFGITE 149
>gi|198432988|ref|XP_002130386.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2 isoform 1 [Ciona intestinalis]
Length = 482
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 45/80 (56%), Positives = 51/80 (63%), Gaps = 18/80 (22%)
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAA------------------AAAAVPVVGS 97
+ + +KA YWDVPP G+EHV+P QYKAMQAA A VPV GS
Sbjct: 96 EKKPKKAYKYWDVPPVGYEHVTPLQYKAMQAAGQIPLMATSQTMGSITAEATLQVPVAGS 155
Query: 98 TITRQARRLYVGNIPFGVTE 117
+TRQARRLYVGNIPFGVTE
Sbjct: 156 QMTRQARRLYVGNIPFGVTE 175
>gi|339243511|ref|XP_003377681.1| splicing factor U2AFsubunit [Trichinella spiralis]
gi|316973494|gb|EFV57074.1| splicing factor U2AFsubunit [Trichinella spiralis]
Length = 402
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/60 (63%), Positives = 47/60 (78%), Gaps = 7/60 (11%)
Query: 65 YWDVPPPGFEHVSPSQYKAMQAAA-------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
YWDVPP GFEH++P++YKA+QAA A+VPVVG ++T Q+RRLYVGNIPFG TE
Sbjct: 42 YWDVPPTGFEHITPAEYKALQAAGQIPRSSLQASVPVVGPSVTCQSRRLYVGNIPFGCTE 101
>gi|321479007|gb|EFX89963.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 isoform 1
[Daphnia pulex]
Length = 487
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 43/74 (58%), Positives = 52/74 (70%), Gaps = 12/74 (16%)
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAAAAVPVV------------GSTITRQA 103
K RRRK S+YWD+PP GFEH++P QYKAMQAA ++ G+TITRQA
Sbjct: 80 KQRRRKPSIYWDIPPIGFEHITPMQYKAMQAAGQIPANIMTEVAPQVQVPVVGNTITRQA 139
Query: 104 RRLYVGNIPFGVTE 117
RRLYVGNIPFGV++
Sbjct: 140 RRLYVGNIPFGVSD 153
>gi|309266895|ref|XP_003086891.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial [Mus
musculus]
Length = 493
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 48/88 (54%), Positives = 53/88 (60%), Gaps = 23/88 (26%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA------------------- 89
RSP + K R+ YWDVPPPGFEHV+P QYKAMQAA
Sbjct: 101 RSPCHEKKKVRK----YWDVPPPGFEHVTPMQYKAMQAAGQILATALLPTMTPGGLAVTP 156
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVG IPFG+TE
Sbjct: 157 MPVPVVGSQMTRQARRLYVGTIPFGITE 184
>gi|432908697|ref|XP_004077989.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like isoform 2
[Oryzias latipes]
Length = 474
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 26/112 (23%)
Query: 29 RDRRSRSRSKDKKRAARSRS----RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAM 84
++RR R +S +++ ++ RSP + +++K YWDVPPPGFEH++P QYKAM
Sbjct: 57 KERRHRRKSVHLHQSSCLKTSCYVRSPH---REKKKKIKKYWDVPPPGFEHITPMQYKAM 113
Query: 85 QAAAA-------------------AAVPVVGSTITRQARRLYVGNIPFGVTE 117
QAA VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 114 QAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITE 165
>gi|47217926|emb|CAG02209.1| unnamed protein product [Tetraodon nigroviridis]
Length = 600
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 56/111 (50%), Gaps = 44/111 (39%)
Query: 48 SRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQA--------------------- 86
S SP+ +SR+++ YWDVPPPGFEH++P QYKAMQ
Sbjct: 75 SHSPK---RSRKKRVCRYWDVPPPGFEHITPLQYKAMQGRAPPRLPGPAPRLPSVSLWPP 131
Query: 87 --------------------AAAAAVPVVGSTITRQARRLYVGNIPFGVTE 117
AA VPV GS +TRQARRLYVGNIPFG+TE
Sbjct: 132 AAGQIPTMALLATAASAGVVAAPTPVPVAGSQMTRQARRLYVGNIPFGLTE 182
>gi|301782083|ref|XP_002926459.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Ailuropoda
melanoleuca]
Length = 496
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 74/148 (50%), Gaps = 38/148 (25%)
Query: 5 RDKDRE------------RDRRRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRS---- 48
RDK+ +RR + RS R R RSK R A+
Sbjct: 43 RDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRGAKEEHGGLI 102
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
RSPR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 103 RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 159
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 160 TPVPVVGSQMTRQARRLYVGNIPFGITE 187
>gi|312078073|ref|XP_003141580.1| U2af splicing factor protein 1 [Loa loa]
Length = 460
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 7/70 (10%)
Query: 55 TKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------AAAVPVVGSTITRQARRLY 107
T + +K +WDVPP G+EH++P +YK +QAA +AVPVVG ++T Q+RRLY
Sbjct: 134 TPEKPKKKYKFWDVPPVGYEHLTPKEYKELQAAGQIPRNNVQSAVPVVGPSVTCQSRRLY 193
Query: 108 VGNIPFGVTE 117
VGNIPFG +E
Sbjct: 194 VGNIPFGCSE 203
>gi|340373805|ref|XP_003385430.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Amphimedon
queenslandica]
Length = 529
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 50/85 (58%), Gaps = 25/85 (29%)
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAAAAVPVVG------------------- 96
KSRRR S +WD+PP GFEH+SP Q+KAMQ AA VP VG
Sbjct: 135 KSRRRNPSQWWDIPPRGFEHISPLQFKAMQ--AAGQVPTVGIPPPALGEATTPLPIPPPP 192
Query: 97 ----STITRQARRLYVGNIPFGVTE 117
S +TRQARRLY+GNIPFG+ E
Sbjct: 193 QPAASQLTRQARRLYIGNIPFGIAE 217
>gi|417410850|gb|JAA51891.1| Putative splicing factor u2af large subunit rrm superfamily,
partial [Desmodus rotundus]
Length = 455
Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 63/149 (42%), Positives = 74/149 (49%), Gaps = 38/149 (25%)
Query: 4 DRDKDR------------ERDRRRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRS--- 48
+RDK+ +RR + RS R R RSK R A+
Sbjct: 1 ERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRRRSKPLTRGAKEEHGGL 60
Query: 49 -RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA------------------- 88
R PR + K + RK YWDVPPPGFEH++P QYKAMQAA
Sbjct: 61 IRPPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVT 117
Query: 89 AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 118 PTPVPVVGSQMTRQARRLYVGNIPFGITE 146
>gi|358338608|dbj|GAA57078.1| splicing factor U2AF large subunit [Clonorchis sinensis]
Length = 518
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 43/78 (55%), Gaps = 25/78 (32%)
Query: 65 YWDVPPPGFEHVSPSQYKAMQAAA-------------------------AAAVPVVGSTI 99
YWDVPPPGFEHV+P+QYKAMQA+ +P GS +
Sbjct: 125 YWDVPPPGFEHVTPAQYKAMQASGQIPVNVYAAGQIPMPAHAPNAPLTLTTNIPFAGSAV 184
Query: 100 TRQARRLYVGNIPFGVTE 117
RQARRLYVGNIPF TE
Sbjct: 185 CRQARRLYVGNIPFTATE 202
>gi|226483519|emb|CAX74060.1| Splicing factor U2AF 65 kDa subunit [Schistosoma japonicum]
gi|226483521|emb|CAX74061.1| Splicing factor U2AF 65 kDa subunit [Schistosoma japonicum]
Length = 518
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 58/115 (50%), Gaps = 38/115 (33%)
Query: 28 SRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAA 87
SRDR+S+ SR RS T + YWDVPPPGFEHV+P+QYKA+QA+
Sbjct: 101 SRDRKSKRH--------HSRHRSASSPTLVYK-----YWDVPPPGFEHVTPAQYKALQAS 147
Query: 88 A-------AAA------------------VPVVGSTITRQARRLYVGNIPFGVTE 117
AA VP GS + RQARRLYVGNIPF TE
Sbjct: 148 GQIPVNVYAAGQVPMPVHAPNAPLTLTTNVPFAGSAVCRQARRLYVGNIPFTATE 202
>gi|268575804|ref|XP_002642882.1| C. briggsae CBR-UAF-1 protein [Caenorhabditis briggsae]
gi|60415989|sp|P90727.2|U2AF2_CAEBR RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; Short=U2AF65; AltName:
Full=U2 snRNP auxiliary factor large subunit
Length = 488
Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 7/74 (9%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA-------AAVPVVGSTITRQA 103
P++ K R K +WDVPP GFE+++P +YK MQA+ A +AVPVVG ++T Q+
Sbjct: 115 PQEPAKPREPKKYRFWDVPPTGFENITPMEYKNMQASGAVPRGSVQSAVPVVGPSVTCQS 174
Query: 104 RRLYVGNIPFGVTE 117
RRLYVGNIPFG E
Sbjct: 175 RRLYVGNIPFGCNE 188
>gi|1710361|gb|AAB38280.1| splicing factor U2AF65 [Caenorhabditis briggsae]
Length = 488
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 7/74 (9%)
Query: 51 PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA-------AAVPVVGSTITRQA 103
P++ K R K +WDVPP GFE+++P +YK MQA+ A +AVPVVG ++T Q+
Sbjct: 115 PQEPAKPREPKKYRFWDVPPTGFENITPMEYKNMQASGAVPRGSVQSAVPVVGPSVTCQS 174
Query: 104 RRLYVGNIPFGVTE 117
RRLYVGNIPFG E
Sbjct: 175 RRLYVGNIPFGCNE 188
>gi|393909510|gb|EJD75480.1| hypothetical protein LOAG_17389 [Loa loa]
Length = 502
Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 7/70 (10%)
Query: 55 TKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------AAAVPVVGSTITRQARRLY 107
T + +K +WDVPP G+EH++P +YK +QAA +AVPVVG ++T Q+RRLY
Sbjct: 134 TPEKPKKKYKFWDVPPVGYEHLTPKEYKELQAAGQIPRNNVQSAVPVVGPSVTCQSRRLY 193
Query: 108 VGNIPFGVTE 117
VGNIPFG +E
Sbjct: 194 VGNIPFGCSE 203
>gi|170575889|ref|XP_001893425.1| U2 auxiliary factor 65 kDa subunit [Brugia malayi]
gi|158600599|gb|EDP37742.1| U2 auxiliary factor 65 kDa subunit, putative [Brugia malayi]
Length = 502
Score = 79.0 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 7/70 (10%)
Query: 55 TKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------AAAVPVVGSTITRQARRLY 107
T + +K +WDVPP G+EH++P +YK +QAA +AVPVVG ++T Q+RRLY
Sbjct: 134 TPEKPKKKYKFWDVPPVGYEHLTPKEYKELQAAGQIPRNNVQSAVPVVGPSVTCQSRRLY 193
Query: 108 VGNIPFGVTE 117
VGNIPFG +E
Sbjct: 194 VGNIPFGCSE 203
>gi|71996475|ref|NP_001022967.1| Protein UAF-1, isoform a [Caenorhabditis elegans]
gi|6226906|sp|P90978.2|U2AF2_CAEEL RecName: Full=Splicing factor U2AF 65 kDa subunit; AltName: Full=U2
auxiliary factor 65 kDa subunit; Short=U2AF65; AltName:
Full=U2 snRNP auxiliary factor large subunit
gi|3334906|gb|AAC26982.1| splicing factor U2AF65 [Caenorhabditis elegans]
gi|351018334|emb|CCD62278.1| Protein UAF-1, isoform a [Caenorhabditis elegans]
Length = 496
Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
Query: 46 SRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------AAAVPVVGST 98
+RSR + K R K +WDVPP GFE +P +YK MQAA +AVPVVG +
Sbjct: 119 ARSRREPEPQKPREPKKYRFWDVPPTGFETTTPMEYKNMQAAGQVPRGSVQSAVPVVGPS 178
Query: 99 ITRQARRLYVGNIPFGVTE 117
+T Q+RRLYVGNIPFG E
Sbjct: 179 VTCQSRRLYVGNIPFGCNE 197
>gi|308477324|ref|XP_003100876.1| CRE-UAF-1 protein [Caenorhabditis remanei]
gi|308264450|gb|EFP08403.1| CRE-UAF-1 protein [Caenorhabditis remanei]
Length = 496
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 7/69 (10%)
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA-------AAVPVVGSTITRQARRLYV 108
K R K +WDVPP GFE+++P +YK MQA+ A +AVPVVG ++T Q+RRLYV
Sbjct: 129 KPREPKKYRFWDVPPNGFENITPMEYKNMQASGAVPRGSVQSAVPVVGPSVTCQSRRLYV 188
Query: 109 GNIPFGVTE 117
GNIPFG E
Sbjct: 189 GNIPFGCNE 197
>gi|194756144|ref|XP_001960339.1| GF13310 [Drosophila ananassae]
gi|190621637|gb|EDV37161.1| GF13310 [Drosophila ananassae]
Length = 434
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 62/113 (54%), Gaps = 23/113 (20%)
Query: 16 RSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEH 75
RSR + + RSR+R RS S D +R R +A+ WDVPP G+ H
Sbjct: 11 RSREQSSRPRSRARPTRSNSIYMDGERR------------GRRLGRAATSWDVPPDGYSH 58
Query: 76 VSPSQYKAMQAAAAAAVPVV-----------GSTITRQARRLYVGNIPFGVTE 117
++P QYKAMQA+ A +V + +TRQARRLYVGNIPFGVTE
Sbjct: 59 LTPLQYKAMQASGQIASRIVPDQQPTAESAAIAMVTRQARRLYVGNIPFGVTE 111
>gi|443731660|gb|ELU16702.1| hypothetical protein CAPTEDRAFT_155651 [Capitella teleta]
Length = 480
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 53/109 (48%), Gaps = 40/109 (36%)
Query: 47 RSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQA-------------------- 86
R+ SP K + RR+K YWDVPP G+EH++P QYKAMQ
Sbjct: 68 RNASP--KRRERRKKPYKYWDVPPAGYEHMTPMQYKAMQGSGLLPELPAIIPMPLMGPTP 125
Query: 87 ------------------AAAAAVPVVGSTITRQARRLYVGNIPFGVTE 117
A +P GS I+RQARRLYVGNIPFGVTE
Sbjct: 126 TAAAAVPAPPPLAGAPGIVAPTNIPFAGSAISRQARRLYVGNIPFGVTE 174
>gi|324503285|gb|ADY41429.1| Splicing factor U2AF 65 kDa subunit [Ascaris suum]
Length = 522
Score = 77.4 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 45/60 (75%), Gaps = 7/60 (11%)
Query: 65 YWDVPPPGFEHVSPSQYKAMQAAA-------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
+WDVPP G+EH++P +YK +QAA +AVPVVG ++T Q+RRLYVGNIPFG +E
Sbjct: 164 FWDVPPAGYEHLTPKEYKELQAAGQIPRNNVQSAVPVVGPSVTCQSRRLYVGNIPFGCSE 223
>gi|341891946|gb|EGT47881.1| hypothetical protein CAEBREN_25972 [Caenorhabditis brenneri]
Length = 491
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 7/69 (10%)
Query: 56 KSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------AAAVPVVGSTITRQARRLYV 108
K R K +WDVPP GFE+ SP +YK MQAA +AVPVVG ++T Q+RRLYV
Sbjct: 124 KPREPKKYRFWDVPPTGFENTSPMEYKNMQAAGQVPRGSVQSAVPVVGPSVTCQSRRLYV 183
Query: 109 GNIPFGVTE 117
GNIPFG E
Sbjct: 184 GNIPFGCNE 192
>gi|256074204|ref|XP_002573416.1| splicing factor u2af large subunit [Schistosoma mansoni]
gi|238658595|emb|CAZ29648.1| splicing factor u2af large subunit, putative [Schistosoma mansoni]
Length = 521
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/98 (41%), Positives = 50/98 (51%), Gaps = 25/98 (25%)
Query: 45 RSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA---------------- 88
+S+ R ++ S YWDVPPPGFEHV+P+QYKA+QA+
Sbjct: 108 KSKRHHSRHRSASSPTLVYKYWDVPPPGFEHVTPAQYKALQASGQIPVNVYAAGQVPMPV 167
Query: 89 ---------AAAVPVVGSTITRQARRLYVGNIPFGVTE 117
VP GS + RQARRLYVGNIPF TE
Sbjct: 168 HAPNAPLTLTTNVPFAGSAVCRQARRLYVGNIPFTATE 205
>gi|195999450|ref|XP_002109593.1| hypothetical protein TRIADDRAFT_21652 [Trichoplax adhaerens]
gi|190587717|gb|EDV27759.1| hypothetical protein TRIADDRAFT_21652 [Trichoplax adhaerens]
Length = 476
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/80 (52%), Positives = 49/80 (61%), Gaps = 16/80 (20%)
Query: 54 KTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQ-----------AAAA-----AAVPVVGS 97
K + R +K S YWDVPP G+E VSP+ YK +Q AAA A P GS
Sbjct: 88 KDRERPKKPSPYWDVPPAGYETVSPADYKELQRDGKVPAQGVPAAAGLGIDPTAAPGSGS 147
Query: 98 TITRQARRLYVGNIPFGVTE 117
ITRQ+RRLYVGNIPFG+TE
Sbjct: 148 QITRQSRRLYVGNIPFGITE 167
>gi|402590758|gb|EJW84688.1| hypothetical protein WUBG_04401 [Wuchereria bancrofti]
Length = 477
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 7/70 (10%)
Query: 55 TKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------AAAVPVVGSTITRQARRLY 107
T + +K +WDVPP G+EH++P +YK +QAA +AVPVVG ++T Q+RRLY
Sbjct: 109 TPEKPKKKYKFWDVPPVGYEHLTPKEYKELQAAGQIPRNNVQSAVPVVGPSVTCQSRRLY 168
Query: 108 VGNIPFGVTE 117
VGNIPFG +E
Sbjct: 169 VGNIPFGCSE 178
>gi|195149862|ref|XP_002015874.1| GL11290 [Drosophila persimilis]
gi|194109721|gb|EDW31764.1| GL11290 [Drosophila persimilis]
Length = 487
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 52 RDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAAAAVPVVGST-----------IT 100
R RRR WDVPP G+ HV+P QYKAMQA+ + T +T
Sbjct: 59 RKSLTKRRRHGPSLWDVPPEGYAHVTPMQYKAMQASGQITARIQSDTQPTADTAAIAMVT 118
Query: 101 RQARRLYVGNIPFGVTE 117
RQARRLYVGNIPFGVTE
Sbjct: 119 RQARRLYVGNIPFGVTE 135
>gi|71996490|ref|NP_001022970.1| Protein UAF-1, isoform d [Caenorhabditis elegans]
gi|351018337|emb|CCD62281.1| Protein UAF-1, isoform d [Caenorhabditis elegans]
Length = 471
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/81 (51%), Positives = 50/81 (61%), Gaps = 9/81 (11%)
Query: 44 ARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------AAAVPVVG 96
ARSR + K R K +WDVPP GFE +P +YK MQAA +AVPVVG
Sbjct: 94 ARSRREP--EPQKPREPKKYRFWDVPPTGFETTTPMEYKNMQAAGQVPRGSVQSAVPVVG 151
Query: 97 STITRQARRLYVGNIPFGVTE 117
++T Q+RRLYVGNIPFG E
Sbjct: 152 PSVTCQSRRLYVGNIPFGCNE 172
>gi|195057468|ref|XP_001995263.1| GH23055 [Drosophila grimshawi]
gi|193899469|gb|EDV98335.1| GH23055 [Drosophila grimshawi]
Length = 453
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 16/104 (15%)
Query: 25 RSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAM 84
+S+ R R + + R ++ + R K RR ++ WDVPP G+EH+SP QYK+M
Sbjct: 43 QSKYRSSYYRCEAGESGRIITWQANTSR---KCRRTSSA--WDVPPVGYEHLSPVQYKSM 97
Query: 85 QAAAAAAVPVV-----------GSTITRQARRLYVGNIPFGVTE 117
QA+ A+ +V +T+TRQARRLYVGNIPF T+
Sbjct: 98 QASGQIALRIVPNALPTGESASIATVTRQARRLYVGNIPFNTTD 141
>gi|198456623|ref|XP_001360392.2| GA16338 [Drosophila pseudoobscura pseudoobscura]
gi|198135682|gb|EAL24967.2| GA16338 [Drosophila pseudoobscura pseudoobscura]
Length = 491
Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 52 RDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAAAAVPVVGST-----------IT 100
R RRR WDVPP G+ HV+P QYKAMQA+ + T +T
Sbjct: 63 RKSLTKRRRHGPSLWDVPPEGYAHVTPMQYKAMQASGQITARIQSDTQPTADTAAIAMVT 122
Query: 101 RQARRLYVGNIPFGVTE 117
RQARRLYVGNIPFGVTE
Sbjct: 123 RQARRLYVGNIPFGVTE 139
>gi|195380577|ref|XP_002049047.1| GJ20975 [Drosophila virilis]
gi|194143844|gb|EDW60240.1| GJ20975 [Drosophila virilis]
Length = 428
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 71/112 (63%), Gaps = 12/112 (10%)
Query: 18 RSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPR-DKTKSRRRKASLYWDVPPPGFEHV 76
R R K +SRSR+RRSRSRS K R RS S + + + K R+ + + WD+PP G+EH+
Sbjct: 3 RGRKEKHQSRSRNRRSRSRSHSKHRPTRSSSITSQPIQVKRRKERINSSWDIPPMGYEHL 62
Query: 77 SPSQYKAMQAAAAAA------VPVVG-----STITRQARRLYVGNIPFGVTE 117
SP QYKAMQA+ A P G +T+TRQARRLYVGNIPF T+
Sbjct: 63 SPVQYKAMQASGQIASRIVPDAPPTGESAAIATVTRQARRLYVGNIPFSTTD 114
>gi|195346998|ref|XP_002040041.1| GM15574 [Drosophila sechellia]
gi|194135390|gb|EDW56906.1| GM15574 [Drosophila sechellia]
Length = 445
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 11/63 (17%)
Query: 66 WDVPPPGFEHVSPSQYKAMQAAAAAAVPVVG-----------STITRQARRLYVGNIPFG 114
WD+PP G+ H++P QYKAMQA+ A ++ S ITRQARRLYVGNIPFG
Sbjct: 58 WDIPPEGYSHLTPQQYKAMQASGQIASRILSDGIHAGESAAISMITRQARRLYVGNIPFG 117
Query: 115 VTE 117
VTE
Sbjct: 118 VTE 120
>gi|195489053|ref|XP_002092574.1| GE11595 [Drosophila yakuba]
gi|194178675|gb|EDW92286.1| GE11595 [Drosophila yakuba]
Length = 437
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 11/63 (17%)
Query: 66 WDVPPPGFEHVSPSQYKAMQAAAAAA-------VPVVGS----TITRQARRLYVGNIPFG 114
WD+PP G+E V+P QYKAMQA+ A +P S ITRQARRLYVGNIPFG
Sbjct: 53 WDIPPEGYEQVTPQQYKAMQASGQIASRIAPDSMPTGESAAIAMITRQARRLYVGNIPFG 112
Query: 115 VTE 117
VTE
Sbjct: 113 VTE 115
>gi|24659166|ref|NP_611769.2| large subunit 2 [Drosophila melanogaster]
gi|7291545|gb|AAF46969.1| large subunit 2 [Drosophila melanogaster]
gi|201066057|gb|ACH92438.1| FI08027p [Drosophila melanogaster]
Length = 449
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 23/103 (22%)
Query: 26 SRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQ 85
+RSR RS + ++ R R SR P WD+PP G+ H++P QYKAM
Sbjct: 34 TRSRPTRSDTIYTERTRLQRRFSRPPSS------------WDIPPEGYNHLTPQQYKAML 81
Query: 86 AAAAAAVPVVG-----------STITRQARRLYVGNIPFGVTE 117
A+ A ++ S ITRQARRLYVGNIPFGVT+
Sbjct: 82 ASGQIASRILSDGVHGGESAAISMITRQARRLYVGNIPFGVTD 124
>gi|18446992|gb|AAL68087.1| AT16577p [Drosophila melanogaster]
Length = 449
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 23/103 (22%)
Query: 26 SRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQ 85
+RSR RS + ++ R R SR P WD+PP G+ H++P Q+KAM
Sbjct: 34 TRSRPTRSDTIYTERTRLQRRFSRPPSS------------WDIPPEGYNHLTPQQHKAML 81
Query: 86 AAAAAAVPVVG-----------STITRQARRLYVGNIPFGVTE 117
A+ A ++ S ITRQARRLYVGNIPFGVT+
Sbjct: 82 ASGQIASRILSDGVHGGESAAISMITRQARRLYVGNIPFGVTD 124
>gi|195585954|ref|XP_002082743.1| GD25073 [Drosophila simulans]
gi|194194752|gb|EDX08328.1| GD25073 [Drosophila simulans]
Length = 445
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 41/63 (65%), Gaps = 11/63 (17%)
Query: 66 WDVPPPGFEHVSPSQYKAMQAAAAAAVPVVG-----------STITRQARRLYVGNIPFG 114
WD+ P G+ H++P QYKAMQA+ A ++ S ITRQARRLYVGNIPFG
Sbjct: 58 WDISPEGYSHLTPQQYKAMQASGQIASRILSDGIHAGESAAISMITRQARRLYVGNIPFG 117
Query: 115 VTE 117
VTE
Sbjct: 118 VTE 120
>gi|195124159|ref|XP_002006561.1| GI21125 [Drosophila mojavensis]
gi|193911629|gb|EDW10496.1| GI21125 [Drosophila mojavensis]
Length = 427
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 11/63 (17%)
Query: 66 WDVPPPGFEHVSPSQYKAMQAAAAAA------VPVVG-----STITRQARRLYVGNIPFG 114
WD+PP G+EH++P +YKAMQA+ A P G +T+TRQARRLYVGNIPF
Sbjct: 52 WDIPPLGYEHLTPVRYKAMQASGQIASRIVPDAPPTGESAAIATVTRQARRLYVGNIPFS 111
Query: 115 VTE 117
T+
Sbjct: 112 TTD 114
>gi|71996485|ref|NP_001022969.1| Protein UAF-1, isoform c [Caenorhabditis elegans]
gi|351018336|emb|CCD62280.1| Protein UAF-1, isoform c [Caenorhabditis elegans]
Length = 474
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 50/80 (62%), Gaps = 9/80 (11%)
Query: 46 SRSRSPRDKTKSRRRKASLYWDVPPPGFEH-VSPSQYKAMQAAA-------AAAVPVVGS 97
+RSR + K R K +WDVPP GFE +P +YK MQAA +AVPVVG
Sbjct: 97 ARSRREPEPQKPREPKKYRFWDVPPTGFE-TTTPMEYKNMQAAGQVPRGSVQSAVPVVGP 155
Query: 98 TITRQARRLYVGNIPFGVTE 117
++T Q+RRLYVGNIPFG E
Sbjct: 156 SVTCQSRRLYVGNIPFGCNE 175
>gi|50882018|gb|AAT85577.1| U2 small nuclear ribonucleoprotein auxiliary factor large subunit
[Alvinella pompejana]
Length = 479
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 44/84 (52%), Gaps = 32/84 (38%)
Query: 66 WDVPPPGFEHVSPSQYKAMQ------AAAAAAVPVV------------------------ 95
WDVPP GFEH++P QYKA+ AA +PVV
Sbjct: 89 WDVPPVGFEHMTPMQYKALHGLGPPGGLAAPGMPVVAPVIAANNVVASPTAPMALNTTIP 148
Query: 96 --GSTITRQARRLYVGNIPFGVTE 117
GS I+RQARRLYVGNIPFGVTE
Sbjct: 149 FAGSAISRQARRLYVGNIPFGVTE 172
>gi|195429288|ref|XP_002062695.1| GK19586 [Drosophila willistoni]
gi|194158780|gb|EDW73681.1| GK19586 [Drosophila willistoni]
Length = 466
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 11/82 (13%)
Query: 47 RSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAAAA---VPVV-------- 95
RS + ++++A WD P G+EH++P QYKAMQA+ A VP +
Sbjct: 66 RSLTAAKSLVGKKQRAPSSWDKAPLGYEHLTPVQYKAMQASGQIASRIVPDILPEAESPA 125
Query: 96 GSTITRQARRLYVGNIPFGVTE 117
+ +TRQARRLYVGNIPFGVT+
Sbjct: 126 LAMVTRQARRLYVGNIPFGVTD 147
>gi|194884971|ref|XP_001976363.1| GG20057 [Drosophila erecta]
gi|190659550|gb|EDV56763.1| GG20057 [Drosophila erecta]
Length = 440
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 49/78 (62%), Gaps = 13/78 (16%)
Query: 53 DKTKSRRR--KASLYWDVPPPGFEHVSPSQYKAMQAAAAAAVPVVG-----------STI 99
DK + +RR +A WDVPP G+ ++P QYKAMQA+ A +V + I
Sbjct: 41 DKPRLQRRLGRAPTSWDVPPEGYGQLTPLQYKAMQASGQIASRIVPDAMPTGESAAIAMI 100
Query: 100 TRQARRLYVGNIPFGVTE 117
TRQARRLYVGNIPFGVTE
Sbjct: 101 TRQARRLYVGNIPFGVTE 118
>gi|260800970|ref|XP_002595369.1| hypothetical protein BRAFLDRAFT_113856 [Branchiostoma floridae]
gi|229280615|gb|EEN51381.1| hypothetical protein BRAFLDRAFT_113856 [Branchiostoma floridae]
Length = 524
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 49/110 (44%), Gaps = 57/110 (51%)
Query: 65 YWDVPPPGFEHVSPSQYKAMQAA----------AAAAVPV-------------------- 94
YWDVPPPGFE+++P QYKAMQAA AA++P
Sbjct: 106 YWDVPPPGFENITPMQYKAMQAAGQVPLLASAGGAASMPSMLAASASEMTRVGNIASDMP 165
Query: 95 ---------------------------VGSTITRQARRLYVGNIPFGVTE 117
+GS +TRQARRLYVGNIPFGVTE
Sbjct: 166 GLGNMASAATGSIPSAALLANAGTAMPIGSQMTRQARRLYVGNIPFGVTE 215
>gi|47201140|emb|CAF88437.1| unnamed protein product [Tetraodon nigroviridis]
Length = 351
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 40/78 (51%), Gaps = 29/78 (37%)
Query: 69 PPPGFEHVSPSQYKAMQA-----------------------------AAAAAVPVVGSTI 99
PPPGFEH++P QYKAMQ A VPV GS +
Sbjct: 76 PPPGFEHITPLQYKAMQGLPSVSLWPPAAGQIPNYGAAGHGRQRGRGGAPTPVPVAGSQM 135
Query: 100 TRQARRLYVGNIPFGVTE 117
TRQARRLYVGN PFG+TE
Sbjct: 136 TRQARRLYVGNNPFGLTE 153
>gi|322792032|gb|EFZ16137.1| hypothetical protein SINV_12499 [Solenopsis invicta]
Length = 344
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 35/48 (72%), Gaps = 11/48 (22%)
Query: 81 YKAMQAAAA-----------AAVPVVGSTITRQARRLYVGNIPFGVTE 117
YKAMQAA AAVPVVGSTITRQARRLYVGNIPFGVTE
Sbjct: 1 YKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTE 48
>gi|449689952|ref|XP_004212193.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like, partial [Hydra
magnipapillata]
Length = 210
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 16/82 (19%)
Query: 49 RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAAAAV--PVVGSTI------- 99
RS KS+R WDVPP G+E ++P Q+KA++AA V PV GS +
Sbjct: 44 RSSHSVPKSKRNT---LWDVPPKGYEDITPVQFKALRAAGKVEVANPVCGSAVPAVSLPQ 100
Query: 100 ----TRQARRLYVGNIPFGVTE 117
T QARR+Y+GNIPFG++E
Sbjct: 101 GAQTTWQARRIYLGNIPFGISE 122
>gi|449669310|ref|XP_004206989.1| PREDICTED: splicing factor U2AF 65 kDa subunit-like [Hydra
magnipapillata]
Length = 480
Score = 64.7 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 13/72 (18%)
Query: 59 RRKASLYWDVPPPGFEHVSPSQYKAMQAAAAAAVPV-------------VGSTITRQARR 105
+ K + WDVPP G+E ++P Q+KA++A+ +P G+ +T QARR
Sbjct: 102 KTKRNTLWDVPPKGYEDITPVQFKALRASGQVEMPTPLSGGVIPATALPQGAQMTMQARR 161
Query: 106 LYVGNIPFGVTE 117
LY GN+PFG+TE
Sbjct: 162 LYCGNLPFGITE 173
>gi|76154628|gb|AAX26078.2| SJCHGC09464 protein [Schistosoma japonicum]
Length = 159
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 13 RRRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPG 72
+R R RS H R R S+SR +D +SR ++ S A YWDVPPPG
Sbjct: 80 KRERKRSHSHGHR-----RHSKSRHRDYSGGHKSRRHQSHHRSPSNSVSAHKYWDVPPPG 134
Query: 73 FEHVSPSQYKAMQAAAAAAVPVVGS 97
FEHV+P+QYKA+Q + V V +
Sbjct: 135 FEHVTPAQYKALQTSGQVPVNVYAA 159
>gi|386764550|ref|NP_001245709.1| U2 small nuclear riboprotein auxiliary factor 50, isoform C
[Drosophila melanogaster]
gi|383293439|gb|AFH07422.1| U2 small nuclear riboprotein auxiliary factor 50, isoform C
[Drosophila melanogaster]
Length = 360
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/49 (69%), Positives = 35/49 (71%), Gaps = 11/49 (22%)
Query: 80 QYKAMQAAAA-----------AAVPVVGSTITRQARRLYVGNIPFGVTE 117
QYKAMQA+ AVPVVGSTITRQARRLYVGNIPFGVTE
Sbjct: 2 QYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTE 50
>gi|432111754|gb|ELK34799.1| Splicing factor U2AF 65 kDa subunit [Myotis davidii]
Length = 116
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 19/66 (28%)
Query: 71 PGFEHVSPSQYKAMQAAA---AAA----------------VPVVGSTITRQARRLYVGNI 111
PGFEH++P Q +AMQAA A A VP GS +TRQAR LY+GNI
Sbjct: 4 PGFEHITPLQCEAMQAAGQIPATALLPTMTPDGLAVTPMPVPAAGSQMTRQARHLYMGNI 63
Query: 112 PFGVTE 117
PFG+TE
Sbjct: 64 PFGITE 69
>gi|357623461|gb|EHJ74600.1| U2 small nuclear ribonucleoprotein auxiliary factor 2 [Danaus
plexippus]
Length = 350
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 90 AAVPVVGSTITRQARRLYVGNIPFGVTE 117
AAVPVVGSTITRQARRLYVGNIPFGVTE
Sbjct: 18 AAVPVVGSTITRQARRLYVGNIPFGVTE 45
>gi|167515386|ref|XP_001742034.1| RNA-binding region RNP-1 containing protein [Monosiga brevicollis
MX1]
gi|163778658|gb|EDQ92272.1| RNA-binding region RNP-1 containing protein [Monosiga brevicollis
MX1]
Length = 431
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 21/99 (21%)
Query: 26 SRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQ 85
S RDRRSRS +D +R++ + P + WDVPPPG+E++ P YK
Sbjct: 14 SHDRDRRSRSLERDSRRSSERDAPEPSEA-----------WDVPPPGYENMPPKVYKDYV 62
Query: 86 AAAAAAVPV----------VGSTITRQARRLYVGNIPFG 114
A +P+ + + +TR ARRLYVG IP G
Sbjct: 63 CTYFAGLPISAELPGLRSSMPNPLTRGARRLYVGGIPNG 101
>gi|321457456|gb|EFX68542.1| hypothetical protein DAPPUDRAFT_228924 [Daphnia pulex]
Length = 432
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 14 RRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKS------RRRKASLYWD 67
RRRSRS D + +S DR + S K+ RS+SR + RR S+YWD
Sbjct: 185 RRRSRSHDRELKSSGTDRNQKIVSMSKETKMRSKSRERNRERSRSPVKRRHRRMPSIYWD 244
Query: 68 VPPPGFEHVSPSQYKAMQAAAAAAVPVVGSTITRQARRLYVGN 110
+PP G+E+++P QYKAM+A T+ L+V N
Sbjct: 245 IPPLGYEYMTPMQYKAMRAQVLT---------TQMQGELFVDN 278
>gi|195167317|ref|XP_002024480.1| GL15893 [Drosophila persimilis]
gi|198469588|ref|XP_001355063.2| GA22177 [Drosophila pseudoobscura pseudoobscura]
gi|194107878|gb|EDW29921.1| GL15893 [Drosophila persimilis]
gi|198146942|gb|EAL32119.2| GA22177 [Drosophila pseudoobscura pseudoobscura]
Length = 418
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 35/70 (50%), Gaps = 32/70 (45%)
Query: 59 RRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLY 107
QYKAMQA+ AVPVVGSTITRQARRLY
Sbjct: 60 ---------------------QYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLY 98
Query: 108 VGNIPFGVTE 117
VGNIPFGVTE
Sbjct: 99 VGNIPFGVTE 108
>gi|15988330|pdb|1JMT|B Chain B, X-Ray Structure Of A Core U2af65U2AF35 HETERODIMER
Length = 28
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 24/28 (85%)
Query: 59 RRKASLYWDVPPPGFEHVSPSQYKAMQA 86
++K YWDVPPPGFEH++P QYKAMQA
Sbjct: 1 KKKVRKYWDVPPPGFEHITPMQYKAMQA 28
>gi|195448282|ref|XP_002071589.1| GK10063 [Drosophila willistoni]
gi|194167674|gb|EDW82575.1| GK10063 [Drosophila willistoni]
Length = 416
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 11/52 (21%)
Query: 66 WDVPPPGFEHVSPSQYKAMQAAAAAAVPVVGSTITRQARRLYVGNIPFGVTE 117
+P V P AVPVVGSTITRQARRLYVGNIPFGVTE
Sbjct: 66 GQIPAS----VVPD-------TPQTAVPVVGSTITRQARRLYVGNIPFGVTE 106
>gi|390341852|ref|XP_792919.3| PREDICTED: splicing factor U2AF 50 kDa subunit-like
[Strongylocentrotus purpuratus]
Length = 386
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 96 GSTITRQARRLYVGNIPFGVTE 117
GS +TRQARRLYVGNIPFGVTE
Sbjct: 55 GSQMTRQARRLYVGNIPFGVTE 76
>gi|118401955|ref|XP_001033297.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89287645|gb|EAR85634.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 1357
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 9/58 (15%)
Query: 5 RDKDRERDRRRRSRSRDH-KKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRRRK 61
R R++ ++R S S DH KK+SRSRDR+ RS SKDKKR D++ SR+R+
Sbjct: 42 RSASRDKKKKRSSESIDHKKKKSRSRDRKKRSHSKDKKRR--------HDRSNSRKRQ 91
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 5 RDKDRERD------RRRRSRSRDHKKRSRSRDRRSR-SRSKDKKRAARSRSRSPRDKTKS 57
RDK ++R ++++SRSRD KKRS S+D++ R RS +KR S D+ K
Sbjct: 46 RDKKKKRSSESIDHKKKKSRSRDRKKRSHSKDKKRRHDRSNSRKRQKSKEKSSSSDREKK 105
Query: 58 RR 59
+
Sbjct: 106 EK 107
>gi|323448636|gb|EGB04532.1| hypothetical protein AURANDRAFT_55169 [Aureococcus anophagefferens]
Length = 400
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 19/116 (16%)
Query: 13 RRRRSRSRDH-------KKRSRSRDRRSRSRSKDKKRAARSRSR----SPRDKTKSRRRK 61
RR SRDH KK R +R + R+ + ++AR RSR SP ++T S
Sbjct: 31 RRDERSSRDHTDNQGRPKKLPRGLERGATGRAVKEPQSAR-RSRFQKMSPTNQTLSSTAA 89
Query: 62 ASLYWDVPPPGFEHVSPSQYKAMQAAAAAAVPVVGSTITRQARRLYVGNIPFGVTE 117
AS+ ++ PP + + + K + VPVV + T+ R L+VGN P G +E
Sbjct: 90 ASIGYNGSPPAADLLKAAMQKGL-------VPVVADSATKARRELFVGNTPQGTSE 138
>gi|295663747|ref|XP_002792426.1| splicing factor U2AF 50 kDa subunit [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279096|gb|EEH34662.1| splicing factor U2AF 50 kDa subunit [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 567
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 25/77 (32%)
Query: 66 WDVPPPGFEHVSPSQYKA-------------------MQAAAAAAVPVVGSTI------T 100
WD+ PPG+EHV+ Q K +QA VP + + +
Sbjct: 175 WDIKPPGYEHVTAEQAKLSGMFPLPGAPRQQAVDPSRLQAFMNQPVPGISTNTVLRPSNS 234
Query: 101 RQARRLYVGNIPFGVTE 117
RQA+RL+V NIP TE
Sbjct: 235 RQAKRLFVHNIPPSATE 251
>gi|225677913|gb|EEH16197.1| splicing factor U2AF 65 kDa subunit ) [Paracoccidioides
brasiliensis Pb03]
gi|226287345|gb|EEH42858.1| splicing factor U2AF 50 kDa subunit [Paracoccidioides brasiliensis
Pb18]
Length = 567
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 25/77 (32%)
Query: 66 WDVPPPGFEHVSPSQYKA-----------MQAA------AAAAVPVVGSTI--------T 100
WD+ PPG+EHV+ Q K QA A PV G++I +
Sbjct: 175 WDIKPPGYEHVTAEQAKLSGMFPLPGAPRQQAVDPSRLQAFMNQPVPGTSINTVLRPSNS 234
Query: 101 RQARRLYVGNIPFGVTE 117
RQA+RL+V NIP TE
Sbjct: 235 RQAKRLFVHNIPPSATE 251
>gi|261196608|ref|XP_002624707.1| splicing factor u2af large subunit [Ajellomyces dermatitidis
SLH14081]
gi|239595952|gb|EEQ78533.1| splicing factor u2af large subunit [Ajellomyces dermatitidis
SLH14081]
gi|239609528|gb|EEQ86515.1| splicing factor u2af large subunit [Ajellomyces dermatitidis ER-3]
gi|327350238|gb|EGE79095.1| splicing factor u2af large subunit [Ajellomyces dermatitidis ATCC
18188]
Length = 570
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 39/86 (45%)
Query: 66 WDVPPPGFEHVSPSQYKAMQAAAAAAVPVVG-------------------STIT------ 100
WD+ PPG+EHV+ A QA + P+ G +TIT
Sbjct: 174 WDIKPPGYEHVT-----AEQAKLSGMFPLPGAPRQQAVDPSRLQAFIHPPTTITAPGSST 228
Query: 101 ---------RQARRLYVGNIPFGVTE 117
RQA+RL+V N+P TE
Sbjct: 229 NTVLKPSNSRQAKRLFVHNLPPSATE 254
>gi|321471966|gb|EFX82937.1| hypothetical protein DAPPUDRAFT_315977 [Daphnia pulex]
Length = 798
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 8 DRERDRRRRSRSRDHKKRSRSRDR---RSRSRSKDKKRAA 44
DRER+ + R R RD+K R R RD R R ++D K A
Sbjct: 23 DRERENKDRERERDNKDRERDRDNNKDRDRGNNRDNKDLA 62
Score = 34.7 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 3 EDRDKDRERDRRRRSRSRDHKKRSRSRDRRSRSRSKD 39
E++D++RERD + R R RD+ K RDR + +KD
Sbjct: 27 ENKDRERERDNKDRERDRDNNK---DRDRGNNRDNKD 60
>gi|225562835|gb|EEH11114.1| splicing factor u2af large subunit [Ajellomyces capsulatus G186AR]
Length = 571
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 29/81 (35%)
Query: 66 WDVPPPGFEHVS----------------------PSQYKAM-------QAAAAAAVPVVG 96
WD+ PPG+EHV+ PS+ +A A + V+
Sbjct: 175 WDIKPPGYEHVTAEQAKLSGMFPLPGAPRQQAVDPSRLQAFIHPPTTSTAPGTSTNTVLK 234
Query: 97 STITRQARRLYVGNIPFGVTE 117
+ +RQA+RL+V N+P TE
Sbjct: 235 PSNSRQAKRLFVHNLPSSATE 255
>gi|154280004|ref|XP_001540815.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412758|gb|EDN08145.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 571
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 29/81 (35%)
Query: 66 WDVPPPGFEHVS----------------------PSQYKAM-------QAAAAAAVPVVG 96
WD+ PPG+EHV+ PS+ +A A + V+
Sbjct: 175 WDIKPPGYEHVTAEQAKLSGMFPLPGAPRQQAVDPSRLQAFIHPPTTSTAPGTSTNTVLK 234
Query: 97 STITRQARRLYVGNIPFGVTE 117
+ +RQA+RL+V N+P TE
Sbjct: 235 PSNSRQAKRLFVHNLPSSATE 255
>gi|240279650|gb|EER43155.1| splicing factor u2af large subunit [Ajellomyces capsulatus H143]
gi|325092783|gb|EGC46093.1| splicing factor u2af large subunit [Ajellomyces capsulatus H88]
Length = 572
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 30/82 (36%)
Query: 66 WDVPPPGFEHVSPSQYKA-------------------MQA-----AAAAAVP------VV 95
WD+ PPG+EHV+ Q K +QA + P V+
Sbjct: 175 WDIKPPGYEHVTAEQAKLSGMFPLPGAPRQQAVDPSRLQAFIHPPTTTSTAPGTSTNTVL 234
Query: 96 GSTITRQARRLYVGNIPFGVTE 117
+ +RQA+RL+V N+P TE
Sbjct: 235 KPSNSRQAKRLFVHNLPSSATE 256
>gi|346324367|gb|EGX93964.1| splicing factor u2af large subunit [Cordyceps militaris CM01]
Length = 583
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 25/77 (32%)
Query: 66 WDVPPPGFEHVSPSQYK-----------------------AMQAAAAAAVPVVG--STIT 100
WD+ PPG+E V+ Q K M A V G + +
Sbjct: 204 WDIKPPGYEAVTSEQAKMSGMFPLPGAPRQQQVDPTKLQALMNQPAGGQVSSAGLKANNS 263
Query: 101 RQARRLYVGNIPFGVTE 117
RQARRL V +IP G TE
Sbjct: 264 RQARRLLVSDIPSGTTE 280
>gi|295673837|ref|XP_002797464.1| predicted protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280114|gb|EEH35680.1| predicted protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1115
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 2 GEDRDKDRERDRRRRSRSRDHKKRSRSRDRR----SRSRSKDKKRAARSRSRSPRDKT-K 56
G DR KD RDRRR+SR D+ + +S +RR SRS S + + + R RDK K
Sbjct: 770 GSDRGKDGSRDRRRKSRHEDYGQDDQSSNRRDYRDSRSPSPSMEPSKGLQHRCKRDKERK 829
Query: 57 SRRRKASLYW 66
R+ S +W
Sbjct: 830 IDRKTTSTHW 839
>gi|449275677|gb|EMC84446.1| putative ATP-dependent RNA helicase DDX23 [Columba livia]
Length = 795
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 10 ERDRRRRSRSRDHKKRSRSRDRRSRSRSKDKKRAARSRSRSPRDKTKSRR 59
ERDRR + R RD K+ R RD+ R KD+KR++ S SR K++ R
Sbjct: 68 ERDRRHKERDRDRNKKDRDRDKDGHRRDKDRKRSSLSPSRGKDSKSRKER 117
>gi|317029342|ref|XP_001391373.2| splicing factor u2af large subunit [Aspergillus niger CBS 513.88]
Length = 561
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 25/76 (32%)
Query: 66 WDVPPPGFEHVS----------------------PSQYKAMQ---AAAAAAVPVVGSTIT 100
WD+ PPG+E+V+ PS+ +A A A + + +
Sbjct: 172 WDIKPPGYENVTAEQAKLSGMFPLPGAPRQQPMDPSRLQAFMNQPAGGNADTSTLKPSNS 231
Query: 101 RQARRLYVGNIPFGVT 116
RQA+RL+V NIP VT
Sbjct: 232 RQAKRLFVYNIPESVT 247
>gi|350635494|gb|EHA23855.1| hypothetical protein ASPNIDRAFT_209800 [Aspergillus niger ATCC
1015]
Length = 566
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 25/76 (32%)
Query: 66 WDVPPPGFEHVS----------------------PSQYKAMQ---AAAAAAVPVVGSTIT 100
WD+ PPG+E+V+ PS+ +A A A + + +
Sbjct: 157 WDIKPPGYENVTAEQAKLSGMFPLPGAPRQQPMDPSRLQAFMNQPAGGNADTSTLKPSNS 216
Query: 101 RQARRLYVGNIPFGVT 116
RQA+RL+V NIP VT
Sbjct: 217 RQAKRLFVYNIPESVT 232
>gi|159123253|gb|EDP48373.1| splicing factor u2af large subunit [Aspergillus fumigatus A1163]
Length = 567
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 35/81 (43%)
Query: 66 WDVPPPGFEHVSPSQYKAMQAAAAAAVPVVGS---------------------------- 97
WD+ PPG+E+V+ A QA + P+ G+
Sbjct: 178 WDIKPPGYENVT-----AEQAKLSGMFPLPGAPRQQPMDPSRLQAFMNQSGGGSADNSAL 232
Query: 98 --TITRQARRLYVGNIPFGVT 116
+ +RQARRL+V N+P GV+
Sbjct: 233 KPSNSRQARRLFVYNLPPGVS 253
>gi|146324846|ref|XP_748978.2| splicing factor u2af large subunit [Aspergillus fumigatus Af293]
gi|129556630|gb|EAL86940.2| splicing factor u2af large subunit [Aspergillus fumigatus Af293]
Length = 563
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 35/81 (43%)
Query: 66 WDVPPPGFEHVSPSQYKAMQAAAAAAVPVVGS---------------------------- 97
WD+ PPG+E+V+ A QA + P+ G+
Sbjct: 174 WDIKPPGYENVT-----AEQAKLSGMFPLPGAPRQQPMDPSRLQAFMNQSGGGSADNSAL 228
Query: 98 --TITRQARRLYVGNIPFGVT 116
+ +RQARRL+V N+P GV+
Sbjct: 229 KPSNSRQARRLFVYNLPPGVS 249
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.127 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,732,776,258
Number of Sequences: 23463169
Number of extensions: 64223799
Number of successful extensions: 1354690
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11967
Number of HSP's successfully gapped in prelim test: 9424
Number of HSP's that attempted gapping in prelim test: 781282
Number of HSP's gapped (non-prelim): 318035
length of query: 117
length of database: 8,064,228,071
effective HSP length: 84
effective length of query: 33
effective length of database: 6,093,321,875
effective search space: 201079621875
effective search space used: 201079621875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)