BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8255
         (117 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
           GN=U2af50 PE=2 SV=1
          Length = 416

 Score =  105 bits (262), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/70 (72%), Positives = 54/70 (77%), Gaps = 11/70 (15%)

Query: 59  RRKASLYWDVPPPGFEHVSPSQYKAMQAAA-----------AAAVPVVGSTITRQARRLY 107
           RRK SLYWDVPPPGFEH++P QYKAMQA+              AVPVVGSTITRQARRLY
Sbjct: 37  RRKPSLYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLY 96

Query: 108 VGNIPFGVTE 117
           VGNIPFGVTE
Sbjct: 97  VGNIPFGVTE 106


>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
           SV=3
          Length = 475

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)

Query: 49  RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------------------A 89
           RSPR + K + RK   YWDVPPPGFEH++P QYKAMQAA                     
Sbjct: 78  RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134

Query: 90  AAVPVVGSTITRQARRLYVGNIPFGVTE 117
             VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162


>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
           SV=4
          Length = 475

 Score = 96.3 bits (238), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 22/88 (25%)

Query: 49  RSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA------------------- 89
           RSPR + K + RK   YWDVPPPGFEH++P QYKAMQAA                     
Sbjct: 78  RSPRHEKKKKVRK---YWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTP 134

Query: 90  AAVPVVGSTITRQARRLYVGNIPFGVTE 117
             VPVVGS +TRQARRLYVGNIPFG+TE
Sbjct: 135 TPVPVVGSQMTRQARRLYVGNIPFGITE 162


>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
           GN=uaf-1 PE=3 SV=2
          Length = 488

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 7/74 (9%)

Query: 51  PRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAAA-------AAVPVVGSTITRQA 103
           P++  K R  K   +WDVPP GFE+++P +YK MQA+ A       +AVPVVG ++T Q+
Sbjct: 115 PQEPAKPREPKKYRFWDVPPTGFENITPMEYKNMQASGAVPRGSVQSAVPVVGPSVTCQS 174

Query: 104 RRLYVGNIPFGVTE 117
           RRLYVGNIPFG  E
Sbjct: 175 RRLYVGNIPFGCNE 188


>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
           GN=uaf-1 PE=2 SV=2
          Length = 496

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 7/79 (8%)

Query: 46  SRSRSPRDKTKSRRRKASLYWDVPPPGFEHVSPSQYKAMQAAA-------AAAVPVVGST 98
           +RSR   +  K R  K   +WDVPP GFE  +P +YK MQAA         +AVPVVG +
Sbjct: 119 ARSRREPEPQKPREPKKYRFWDVPPTGFETTTPMEYKNMQAAGQVPRGSVQSAVPVVGPS 178

Query: 99  ITRQARRLYVGNIPFGVTE 117
           +T Q+RRLYVGNIPFG  E
Sbjct: 179 VTCQSRRLYVGNIPFGCNE 197


>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
          GN=U2AF65A PE=2 SV=2
          Length = 573

 Score = 29.6 bits (65), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 5  RDKDRERDRRR-RSRSRDHKKRSRSRDR---RSRSRSKDKKRAARSR 47
          R KDRER++ R + R RD +   RSRDR   +S+ RS+DK R  R R
Sbjct: 50 RSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRER 96


>sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1
          Length = 501

 Score = 29.3 bits (64), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 4/42 (9%)

Query: 4   DRDKDRERD-RRRRSRSRD---HKKRSRSRDRRSRSRSKDKK 41
           DRDKDRE +  R RSR +D   HK R RS+D+RS+   ++++
Sbjct: 352 DRDKDREAESERERSRKKDREHHKDRERSKDKRSKGEGEERR 393


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.127    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,730,579
Number of Sequences: 539616
Number of extensions: 1497967
Number of successful extensions: 36427
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 459
Number of HSP's that attempted gapping in prelim test: 13875
Number of HSP's gapped (non-prelim): 11600
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)