Query psy8255
Match_columns 117
No_of_seqs 118 out of 166
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 22:40:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_B Splicing factor U2AF 65 99.5 8.1E-15 2.8E-19 83.2 1.4 27 60-86 2-28 (28)
2 4fxv_A ELAV-like protein 1; RN 95.4 0.0051 1.7E-07 40.6 1.5 16 102-117 18-33 (99)
3 2cpz_A CUG triplet repeat RNA- 95.0 0.011 3.9E-07 38.9 2.2 19 99-117 21-39 (115)
4 1oo0_B CG8781-PA, drosophila Y 94.8 0.012 4E-07 38.5 1.9 21 97-117 20-40 (110)
5 2e5j_A Methenyltetrahydrofolat 94.8 0.013 4.3E-07 37.7 2.0 18 100-117 16-33 (97)
6 2err_A Ataxin-2-binding protei 94.8 0.013 4.3E-07 38.9 2.0 24 94-117 20-43 (109)
7 1p27_B RNA-binding protein 8A; 94.7 0.013 4.5E-07 37.9 1.9 20 98-117 18-37 (106)
8 1u6f_A Tcubp1, RNA-binding pro 94.4 0.0079 2.7E-07 40.9 0.3 18 100-117 39-56 (139)
9 2hgm_A HNRPF protein, heteroge 94.4 0.017 5.9E-07 40.6 2.0 18 100-117 39-56 (126)
10 2i2y_A Fusion protein consists 94.2 0.038 1.3E-06 38.1 3.3 20 98-117 68-87 (150)
11 2cq4_A RNA binding motif prote 94.1 0.013 4.6E-07 38.5 0.9 18 100-117 22-39 (114)
12 1x5o_A RNA binding motif, sing 94.0 0.026 9E-07 37.0 2.1 17 101-117 23-39 (114)
13 2cpx_A Hypothetical protein FL 93.9 0.025 8.6E-07 37.0 2.0 16 102-117 24-39 (115)
14 2jvr_A Nucleolar protein 3; RN 93.9 0.018 6E-07 39.5 1.1 16 102-117 27-42 (111)
15 2khc_A Testis-specific RNP-typ 93.8 0.031 1.1E-06 36.8 2.3 18 100-117 37-54 (118)
16 2la4_A Nuclear and cytoplasmic 93.8 0.027 9.1E-07 36.2 1.8 16 102-117 26-41 (101)
17 2ad9_A Polypyrimidine tract-bi 93.7 0.021 7.3E-07 39.9 1.4 16 102-117 30-45 (119)
18 1rk8_A CG8781-PA, CG8781-PA pr 93.7 0.024 8.1E-07 40.1 1.6 20 98-117 67-86 (165)
19 2jrs_A RNA-binding protein 39; 93.7 0.025 8.6E-07 37.5 1.6 18 100-117 23-40 (108)
20 3r27_A HnRNP L, heterogeneous 93.6 0.023 7.9E-07 38.8 1.4 15 103-117 21-35 (100)
21 1wel_A RNA-binding protein 12; 93.6 0.031 1.1E-06 37.6 2.0 15 103-117 25-39 (124)
22 3ulh_A THO complex subunit 4; 93.6 0.026 8.9E-07 36.5 1.5 17 101-117 27-43 (107)
23 1x4b_A Heterogeneous nuclear r 93.5 0.024 8.2E-07 37.4 1.3 18 100-117 24-41 (116)
24 2ku7_A MLL1 PHD3-CYP33 RRM chi 93.5 0.032 1.1E-06 37.4 1.9 19 99-117 59-77 (140)
25 2xnq_A Nuclear polyadenylated 93.4 0.028 9.7E-07 36.5 1.5 18 100-117 19-37 (97)
26 2jvo_A Nucleolar protein 3; nu 93.4 0.028 9.5E-07 37.4 1.4 19 99-117 27-45 (108)
27 2a3j_A U1 small nuclear ribonu 93.3 0.037 1.3E-06 38.6 2.0 15 103-117 29-43 (127)
28 1x4g_A Nucleolysin TIAR; struc 93.3 0.029 1E-06 36.7 1.4 16 102-117 24-39 (109)
29 2hgl_A HNRPF protein, heteroge 93.2 0.038 1.3E-06 39.0 2.0 20 98-117 39-58 (136)
30 2rs2_A Musashi-1, RNA-binding 93.2 0.027 9.3E-07 37.3 1.1 18 100-117 22-39 (109)
31 3egn_A RNA-binding protein 40; 93.1 0.025 8.7E-07 38.7 1.0 18 100-117 42-59 (143)
32 1x4f_A Matrin 3; structural ge 92.9 0.046 1.6E-06 37.8 2.1 16 102-117 24-40 (112)
33 3n9u_C Cleavage and polyadenyl 92.8 0.035 1.2E-06 39.7 1.3 16 102-117 54-69 (156)
34 2lea_A Serine/arginine-rich sp 92.6 0.037 1.3E-06 38.3 1.2 21 97-117 41-61 (135)
35 2jwn_A Embryonic polyadenylate 92.6 0.028 9.7E-07 37.4 0.5 17 101-117 34-50 (124)
36 2hgn_A Heterogeneous nuclear r 92.3 0.038 1.3E-06 39.2 1.0 18 100-117 43-60 (139)
37 2kt5_A RNA and export factor-b 92.3 0.056 1.9E-06 36.1 1.7 18 100-117 32-49 (124)
38 1wf1_A RNA-binding protein RAL 92.2 0.048 1.7E-06 35.7 1.3 15 103-117 27-42 (110)
39 1h2v_Z 20 kDa nuclear CAP bind 91.8 0.068 2.3E-06 37.0 1.8 17 101-117 37-53 (156)
40 2kn4_A Immunoglobulin G-bindin 91.7 0.084 2.9E-06 36.3 2.2 18 100-117 67-84 (158)
41 3pgw_S U1-70K; protein-RNA com 91.6 0.14 4.7E-06 42.4 3.7 17 101-117 100-116 (437)
42 2qfj_A FBP-interacting repress 91.4 0.063 2.1E-06 37.8 1.3 18 100-117 25-42 (216)
43 2kxn_B Transformer-2 protein h 90.6 0.065 2.2E-06 36.8 0.7 17 101-117 44-60 (129)
44 2ghp_A U4/U6 snRNA-associated 90.5 0.062 2.1E-06 40.2 0.6 20 98-117 36-55 (292)
45 4f25_A Polyadenylate-binding p 90.0 0.059 2E-06 35.9 0.0 17 101-117 95-111 (115)
46 3q2s_C Cleavage and polyadenyl 89.8 0.11 3.6E-06 39.2 1.3 16 102-117 67-82 (229)
47 1sjr_A Polypyrimidine tract-bi 89.5 0.12 4.1E-06 38.3 1.4 15 103-117 46-60 (164)
48 3zzy_A Polypyrimidine tract-bi 89.4 0.12 4E-06 36.9 1.2 14 104-117 29-42 (130)
49 2f3j_A RNA and export factor b 88.9 0.17 5.7E-06 36.7 1.8 17 101-117 86-102 (177)
50 2adc_A Polypyrimidine tract-bi 88.2 0.19 6.5E-06 36.8 1.7 16 102-117 33-49 (229)
51 1fje_B Nucleolin RBD12, protei 88.1 0.22 7.5E-06 34.0 1.9 19 99-117 95-113 (175)
52 2voo_A Lupus LA protein; RNA-b 88.0 0.14 4.9E-06 37.5 0.9 18 100-117 106-123 (193)
53 2e5i_A Heterogeneous nuclear r 87.9 0.17 5.7E-06 35.5 1.2 14 104-117 26-39 (124)
54 1l3k_A Heterogeneous nuclear r 87.5 0.19 6.5E-06 34.8 1.3 16 102-117 103-118 (196)
55 3nmr_A Cugbp ELAV-like family 86.8 0.24 8.3E-06 33.4 1.5 16 102-117 94-109 (175)
56 2g4b_A Splicing factor U2AF 65 85.6 0.27 9.2E-06 33.3 1.2 16 102-117 93-108 (172)
57 2yh0_A Splicing factor U2AF 65 85.5 0.41 1.4E-05 33.1 2.1 17 101-117 112-128 (198)
58 2cjk_A Nuclear polyadenylated 85.1 0.21 7.2E-06 33.7 0.5 17 101-117 85-101 (167)
59 3tyt_A Heterogeneous nuclear r 84.5 0.25 8.5E-06 36.3 0.6 15 103-117 123-137 (205)
60 3md3_A Nuclear and cytoplasmic 84.3 0.44 1.5E-05 31.7 1.8 18 100-117 84-101 (166)
61 4f02_A Polyadenylate-binding p 83.7 0.38 1.3E-05 34.7 1.4 16 102-117 102-117 (213)
62 1fxl_A Paraneoplastic encephal 83.1 0.66 2.3E-05 30.8 2.3 18 100-117 85-102 (167)
63 2qfj_A FBP-interacting repress 81.8 0.5 1.7E-05 33.1 1.3 16 102-117 124-139 (216)
64 2ghp_A U4/U6 snRNA-associated 81.6 0.52 1.8E-05 35.1 1.4 16 102-117 116-131 (292)
65 1b7f_A Protein (SXL-lethal pro 80.8 0.6 2E-05 31.3 1.4 17 101-117 87-103 (168)
66 3pgw_A U1-A; protein-RNA compl 80.4 0.58 2E-05 34.6 1.3 16 102-117 206-221 (282)
67 1qm9_A Polypyrimidine tract-bi 78.4 0.74 2.5E-05 32.1 1.3 15 103-117 120-134 (198)
68 3smz_A Protein raver-1, ribonu 78.2 0.74 2.5E-05 34.1 1.3 16 102-117 94-109 (284)
69 2cq2_A Hypothetical protein LO 77.3 0.54 1.8E-05 32.6 0.3 15 103-117 25-41 (114)
70 2adc_A Polypyrimidine tract-bi 77.3 0.85 2.9E-05 33.2 1.4 15 103-117 151-165 (229)
71 3sde_A Paraspeckle component 1 77.3 0.85 2.9E-05 34.0 1.4 17 101-117 94-110 (261)
72 3u1l_A PRE-mRNA-splicing facto 75.7 0.58 2E-05 36.3 0.1 17 99-115 130-146 (240)
73 3smz_A Protein raver-1, ribonu 67.1 2.1 7.2E-05 31.6 1.4 17 101-117 182-199 (284)
74 2bz2_A Negative elongation fac 45.4 7.9 0.00027 25.9 1.3 15 101-117 37-51 (121)
75 2hvz_A Splicing factor, argini 29.5 13 0.00045 23.1 0.3 10 103-112 91-100 (101)
76 1i4w_A Mitochondrial replicati 25.7 20 0.00067 29.1 0.8 12 105-116 144-155 (353)
77 1no7_A Major capsid protein; n 20.2 29 0.00098 30.9 0.8 23 92-114 113-135 (604)
No 1
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=99.47 E-value=8.1e-15 Score=83.22 Aligned_cols=27 Identities=74% Similarity=1.431 Sum_probs=21.6
Q ss_pred ccCCCCCCCCCCCCCCCChhHHHHHHH
Q psy8255 60 RKASLYWDVPPPGFEHVSPSQYKAMQA 86 (117)
Q Consensus 60 rk~~s~WDv~PpG~E~vta~QaK~mq~ 86 (117)
++++++|||||||||+|||+|||+||+
T Consensus 2 r~p~~~WDvpP~GyE~vtp~qykamq~ 28 (28)
T 1jmt_B 2 KKVRKYWDVPPPGFEHITPMQYKAMQA 28 (28)
T ss_dssp ----CCBTCCCTTCTTSCHHHHHHTCC
T ss_pred CCcccccCCCCCCccccCHHHHhhccC
Confidence 466779999999999999999999874
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=95.41 E-value=0.0051 Score=40.59 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.3
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
|.-.|||||||+++||
T Consensus 18 ~gt~lfV~nLp~~~te 33 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQ 33 (99)
T ss_dssp CCSEEEEESCCTTCCH
T ss_pred CCCEEEEeCCCCCCCH
Confidence 3347999999999986
No 3
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=94.99 E-value=0.011 Score=38.94 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=15.3
Q ss_pred cccccceeEeecCCCCCCC
Q psy8255 99 ITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 99 ~SRQaRRLYVGNLP~~vtE 117 (117)
..-..+.|||+|||+.++|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~ 39 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGD 39 (115)
T ss_dssp CCSTTCCEEEESCCSSCCH
T ss_pred CCCCCcEEEEeCCCCCCCH
Confidence 3445679999999999985
No 4
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=94.83 E-value=0.012 Score=38.48 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=16.7
Q ss_pred CccccccceeEeecCCCCCCC
Q psy8255 97 STITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 97 ~~~SRQaRRLYVGNLP~~vtE 117 (117)
++.+-..+.|||||||+.+||
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~ 40 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQE 40 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCH
T ss_pred CCCCCCCCEEEEeCCCCCCCH
Confidence 344556789999999999885
No 5
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.82 E-value=0.013 Score=37.74 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=14.8
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
......|||||||+.++|
T Consensus 16 ~~~~~~l~V~nL~~~~t~ 33 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARV 33 (97)
T ss_dssp SCCCCEEEEECCCTTCCH
T ss_pred CCCCCEEEEeCCCCcCcH
Confidence 345679999999999985
No 6
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.78 E-value=0.013 Score=38.89 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=17.9
Q ss_pred CCCCccccccceeEeecCCCCCCC
Q psy8255 94 VVGSTITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 94 ~~~~~~SRQaRRLYVGNLP~~vtE 117 (117)
.+.+......+.|||||||++++|
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te 43 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRD 43 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCH
T ss_pred CCCccCCCCCCEEEEECCCCcCCH
Confidence 344455667889999999999885
No 7
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=94.72 E-value=0.013 Score=37.91 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=15.9
Q ss_pred ccccccceeEeecCCCCCCC
Q psy8255 98 TITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 98 ~~SRQaRRLYVGNLP~~vtE 117 (117)
+.+...+.|||||||+.++|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~ 37 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATE 37 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCH
T ss_pred CCCCCCCEEEEeCCCCCCCH
Confidence 33455679999999999885
No 8
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=94.45 E-value=0.0079 Score=40.88 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=15.2
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
....+.|||||||+.++|
T Consensus 39 ~~~~~~l~V~nLp~~~~~ 56 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDE 56 (139)
T ss_dssp TTTTSEEEEESCSTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 445689999999999986
No 9
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=94.37 E-value=0.017 Score=40.55 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.2
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
......|||||||+.+||
T Consensus 39 ~~~~~~lfVgnLp~~~te 56 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTK 56 (126)
T ss_dssp SSSCCEEEEECCCTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 446678999999999986
No 10
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.16 E-value=0.038 Score=38.11 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.6
Q ss_pred ccccccceeEeecCCCCCCC
Q psy8255 98 TITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 98 ~~SRQaRRLYVGNLP~~vtE 117 (117)
...-..+.|||||||+.+||
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSC
T ss_pred cCCCCCCEEEEeCCCCCCCH
Confidence 44456789999999999986
No 11
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.09 E-value=0.013 Score=38.53 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=15.2
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
....+.|||||||+.++|
T Consensus 22 ~~~~~~l~V~nlp~~~t~ 39 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRP 39 (114)
T ss_dssp HHHHTEEEEESCCTTCCH
T ss_pred cCCCCEEEEeCCCCCCCH
Confidence 456789999999999985
No 12
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.96 E-value=0.026 Score=36.99 Aligned_cols=17 Identities=29% Similarity=0.782 Sum_probs=14.2
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
-....|||||||+.++|
T Consensus 23 ~~~~~l~V~nlp~~~t~ 39 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDE 39 (114)
T ss_dssp CCTTEEEEESCCTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 35578999999999885
No 13
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.94 E-value=0.025 Score=37.03 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=13.6
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||||||+.+||
T Consensus 24 ~~~~l~V~nLp~~~t~ 39 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTE 39 (115)
T ss_dssp CCSEEEEECCCTTCCH
T ss_pred CCCEEEEeCCCCCCCH
Confidence 3469999999999985
No 14
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=93.88 E-value=0.018 Score=39.48 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.8
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
...+|||||||++++|
T Consensus 27 ~~~~l~VgnLp~~~te 42 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSW 42 (111)
T ss_dssp CCEEEEEECSSCCCCH
T ss_pred CCCEEEEECCCCCCCH
Confidence 4569999999999985
No 15
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=93.82 E-value=0.031 Score=36.82 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.1
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
....+.|||||||++++|
T Consensus 37 ~~~~~~l~V~nlp~~~t~ 54 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTD 54 (118)
T ss_dssp CCCSEEEEEECSCTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 445689999999999885
No 16
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.027 Score=36.20 Aligned_cols=16 Identities=44% Similarity=0.704 Sum_probs=13.6
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||||||+.++|
T Consensus 26 ~~~~l~V~nlp~~~~~ 41 (101)
T 2la4_A 26 RVTTAYIGNIPHFATE 41 (101)
T ss_dssp SCCEEEEESCCTTCCH
T ss_pred CCCEEEEcCCCcccCH
Confidence 3469999999999885
No 17
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.72 E-value=0.021 Score=39.93 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=13.8
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
..+.|||||||+.+||
T Consensus 30 ps~~LfVgNLp~~vte 45 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTE 45 (119)
T ss_dssp CCSEEEEESCCTTCCH
T ss_pred CCCEEEEeCCCCCCCH
Confidence 3568999999999986
No 18
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=93.70 E-value=0.024 Score=40.07 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=15.3
Q ss_pred ccccccceeEeecCCCCCCC
Q psy8255 98 TITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 98 ~~SRQaRRLYVGNLP~~vtE 117 (117)
+.+.....|||||||+.++|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~ 86 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQE 86 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCH
T ss_pred CCCCCCCEEEEeCCCCCCCH
Confidence 33455679999999999885
No 19
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=93.66 E-value=0.025 Score=37.54 Aligned_cols=18 Identities=44% Similarity=0.818 Sum_probs=14.9
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
.-..+.|||||||++++|
T Consensus 23 ~~~~~~l~V~nLp~~~te 40 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITE 40 (108)
T ss_dssp CSSCEEEEEECCCSSCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 345679999999999885
No 20
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=93.62 E-value=0.023 Score=38.84 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=13.2
Q ss_pred cceeEeecCCCCCCC
Q psy8255 103 ARRLYVGNIPFGVTE 117 (117)
Q Consensus 103 aRRLYVGNLP~~vtE 117 (117)
.+.|||+|||+++||
T Consensus 21 s~~l~V~NLp~~~te 35 (100)
T 3r27_A 21 SPVVHIRGLIDGVVE 35 (100)
T ss_dssp CSEEEEESCCTTCCH
T ss_pred CcEEEEeCCCCCCCH
Confidence 468999999999986
No 21
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.60 E-value=0.031 Score=37.56 Aligned_cols=15 Identities=20% Similarity=0.518 Sum_probs=13.1
Q ss_pred cceeEeecCCCCCCC
Q psy8255 103 ARRLYVGNIPFGVTE 117 (117)
Q Consensus 103 aRRLYVGNLP~~vtE 117 (117)
...|||||||+.+||
T Consensus 25 ~~~l~V~nLp~~~te 39 (124)
T 1wel_A 25 GFCVYLKGLPFEAEN 39 (124)
T ss_dssp CCEEEEECCCTTCCH
T ss_pred CcEEEEeCCCCCCCH
Confidence 358999999999985
No 22
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=93.59 E-value=0.026 Score=36.51 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=14.2
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
.....|||+|||+.++|
T Consensus 27 ~~~~~l~V~nlp~~~t~ 43 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSD 43 (107)
T ss_dssp CCSEEEEEESCCTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 34578999999999985
No 23
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.51 E-value=0.024 Score=37.40 Aligned_cols=18 Identities=39% Similarity=0.796 Sum_probs=15.0
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
....+.|||||||+.++|
T Consensus 24 ~~~~~~l~V~nLp~~~te 41 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTE 41 (116)
T ss_dssp HHHHTEEEEECCTTCCCH
T ss_pred cCCCCEEEEeCCCCCCCH
Confidence 445679999999999985
No 24
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=93.48 E-value=0.032 Score=37.39 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=15.8
Q ss_pred cccccceeEeecCCCCCCC
Q psy8255 99 ITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 99 ~SRQaRRLYVGNLP~~vtE 117 (117)
.....+.|||||||+.++|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~ 77 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDD 77 (140)
T ss_dssp SCSSCCEEEEECCCTTCCH
T ss_pred CCCCCcEEEEEeCCCCCCH
Confidence 3456789999999999885
No 25
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=93.45 E-value=0.028 Score=36.50 Aligned_cols=18 Identities=33% Similarity=0.864 Sum_probs=14.8
Q ss_pred ccccceeEeecCCC-CCCC
Q psy8255 100 TRQARRLYVGNIPF-GVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~-~vtE 117 (117)
..-...|||||||+ +++|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~ 37 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSK 37 (97)
T ss_dssp CCTTCEEEEESCCSSCCCH
T ss_pred CCCCCEEEEeCCCcccCCH
Confidence 44567999999999 8875
No 26
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=93.36 E-value=0.028 Score=37.41 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.2
Q ss_pred cccccceeEeecCCCCCCC
Q psy8255 99 ITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 99 ~SRQaRRLYVGNLP~~vtE 117 (117)
..-....|||||||++++|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~ 45 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQE 45 (108)
T ss_dssp -CCSCSEEEECSSCTTCCH
T ss_pred CCCCCCEEEEECCCCCCCH
Confidence 3456689999999999985
No 27
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=93.27 E-value=0.037 Score=38.57 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=13.0
Q ss_pred cceeEeecCCCCCCC
Q psy8255 103 ARRLYVGNIPFGVTE 117 (117)
Q Consensus 103 aRRLYVGNLP~~vtE 117 (117)
...|||||||+.++|
T Consensus 29 ~~~LfV~nL~~~~~e 43 (127)
T 2a3j_A 29 SQVVLITNINPEVPK 43 (127)
T ss_dssp CSEEEEESCCTTSCH
T ss_pred CCEEEEeCCCCCCCH
Confidence 568999999999875
No 28
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.25 E-value=0.029 Score=36.67 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.8
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
..+.|||||||++++|
T Consensus 24 ~~~~l~V~nl~~~~t~ 39 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTD 39 (109)
T ss_dssp SCCEEEEECCSSCCCH
T ss_pred CCcEEEEeCCCCCCCH
Confidence 4579999999999885
No 29
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=93.23 E-value=0.038 Score=39.02 Aligned_cols=20 Identities=5% Similarity=0.122 Sum_probs=16.2
Q ss_pred ccccccceeEeecCCCCCCC
Q psy8255 98 TITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 98 ~~SRQaRRLYVGNLP~~vtE 117 (117)
........|||||||+.+||
T Consensus 39 ~~~~~~~~lfVgnLp~~~te 58 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSV 58 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCH
T ss_pred CCCCCCCEEEEeCCCCCCCH
Confidence 33456789999999999986
No 30
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=93.18 E-value=0.027 Score=37.34 Aligned_cols=18 Identities=11% Similarity=0.517 Sum_probs=12.9
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
....+.|||||||+.++|
T Consensus 22 ~~~~~~lfV~nLp~~~te 39 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQ 39 (109)
T ss_dssp ----CCEEEESCCTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 445679999999999985
No 31
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=93.13 E-value=0.025 Score=38.70 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=14.6
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
......|||||||+.+||
T Consensus 42 ~~~~~~l~V~nLp~~~te 59 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQE 59 (143)
T ss_dssp CSCCSEEEEEEECTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 344578999999999985
No 32
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.93 E-value=0.046 Score=37.84 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=13.7
Q ss_pred ccceeEeecCCCC-CCC
Q psy8255 102 QARRLYVGNIPFG-VTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~-vtE 117 (117)
-.+.|||||||++ ++|
T Consensus 24 p~~~l~V~NLp~~~~te 40 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSD 40 (112)
T ss_dssp CCCEEEEESCCCSSCCS
T ss_pred CCCEEEEeCCCCccCCH
Confidence 3568999999997 886
No 33
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=92.78 E-value=0.035 Score=39.66 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=13.0
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||||||+.+||
T Consensus 54 ~~~~lfVgnLp~~~te 69 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD 69 (156)
T ss_dssp --CEEEEECCCTTCCH
T ss_pred CCCEEEEeCCCCCCCH
Confidence 4579999999999986
No 34
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=92.59 E-value=0.037 Score=38.27 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=16.7
Q ss_pred CccccccceeEeecCCCCCCC
Q psy8255 97 STITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 97 ~~~SRQaRRLYVGNLP~~vtE 117 (117)
+......+.|||||||+.+||
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te 61 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSP 61 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHH
T ss_pred CCCCCCCCEEEEeCCCCCCCH
Confidence 344566789999999999875
No 35
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=92.56 E-value=0.028 Score=37.35 Aligned_cols=17 Identities=41% Similarity=0.815 Sum_probs=14.5
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
...+.|||||||+++||
T Consensus 34 ~~~~~l~V~nlp~~~t~ 50 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTA 50 (124)
T ss_dssp HHHTEEEEEEECTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 45679999999999985
No 36
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=92.32 E-value=0.038 Score=39.24 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=14.3
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
......|||+|||+.+||
T Consensus 43 ~~~~~~lfV~nLp~~~te 60 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATE 60 (139)
T ss_dssp --CCCCEECCSCCTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 456679999999999986
No 37
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=92.28 E-value=0.056 Score=36.08 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=14.9
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
......|||||||+.++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~ 49 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSD 49 (124)
T ss_dssp CSSCEEEEEESCCSSCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 345679999999999885
No 38
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=92.15 E-value=0.048 Score=35.66 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=13.0
Q ss_pred cceeEeecCCCC-CCC
Q psy8255 103 ARRLYVGNIPFG-VTE 117 (117)
Q Consensus 103 aRRLYVGNLP~~-vtE 117 (117)
.+.|||||||+. ++|
T Consensus 27 ~~~l~V~nl~~~~~t~ 42 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKK 42 (110)
T ss_dssp SSEEEECSCCCSSCCH
T ss_pred CcEEEEeCCCcccCCH
Confidence 469999999999 875
No 39
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=91.84 E-value=0.068 Score=37.04 Aligned_cols=17 Identities=47% Similarity=0.800 Sum_probs=14.5
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
...+.|||+|||+.+||
T Consensus 37 ~~~~~l~V~nlp~~~t~ 53 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTE 53 (156)
T ss_dssp TTCCEEEEESCCTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 45679999999999985
No 40
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.73 E-value=0.084 Score=36.34 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.1
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
.-....|||||||+.++|
T Consensus 67 ~~~~~~l~v~nl~~~~~~ 84 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSP 84 (158)
T ss_dssp CCBCCEEEEESCCTTCCH
T ss_pred CCCCCEEEEeCCCCCCCH
Confidence 345789999999999985
No 41
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=91.63 E-value=0.14 Score=42.45 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.3
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
-....|||||||+.|||
T Consensus 100 ~~~~~lfV~nL~~~~te 116 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTE 116 (437)
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 34578999999999986
No 42
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=91.43 E-value=0.063 Score=37.85 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.2
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
....+.|||||||+++||
T Consensus 25 ~~~~~~l~V~nLp~~~t~ 42 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGE 42 (216)
T ss_dssp HHHHTEEEEECCCTTCCH
T ss_pred cCcCCEEEEECCCCCCCH
Confidence 445679999999999985
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=90.57 E-value=0.065 Score=36.84 Aligned_cols=17 Identities=24% Similarity=0.016 Sum_probs=14.2
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
-..+.|||+|||+.++|
T Consensus 44 ~~~~~l~V~nLp~~~te 60 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTE 60 (129)
T ss_dssp CCSSCBCEETCTTSCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 34578999999999985
No 44
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=90.53 E-value=0.062 Score=40.20 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=13.1
Q ss_pred ccccccceeEeecCCCCCCC
Q psy8255 98 TITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 98 ~~SRQaRRLYVGNLP~~vtE 117 (117)
...+..+.|||||||+++||
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~ 55 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQ 55 (292)
T ss_dssp ------CEEEEEEECTTCCH
T ss_pred ccCCCCCEEEEeCCCCCCCH
Confidence 44677889999999999985
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=89.95 E-value=0.059 Score=35.91 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=0.0
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
.+...|||+|||+++||
T Consensus 95 ~~~~~lyv~Nl~~~~T~ 111 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTR 111 (115)
T ss_dssp -----------------
T ss_pred CCCCceEeCCCCCCccc
Confidence 34457999999999986
No 46
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=89.76 E-value=0.11 Score=39.22 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=12.8
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||||||+.+||
T Consensus 67 ~~~~lfVgnL~~~~te 82 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD 82 (229)
T ss_dssp --CEEEEESCCTTCCH
T ss_pred CccEEEEeCCCCCCCH
Confidence 4568999999999986
No 47
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=89.51 E-value=0.12 Score=38.32 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=12.9
Q ss_pred cceeEeecCCCCCCC
Q psy8255 103 ARRLYVGNIPFGVTE 117 (117)
Q Consensus 103 aRRLYVGNLP~~vtE 117 (117)
--.|||||||+.+||
T Consensus 46 vl~l~VgNL~~~vte 60 (164)
T 1sjr_A 46 VLRIIVENLFYPVTL 60 (164)
T ss_dssp EEEEEECSCCSCCCH
T ss_pred eEEEEEeCcCCCCCH
Confidence 457999999999986
No 48
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=89.37 E-value=0.12 Score=36.88 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=12.4
Q ss_pred ceeEeecCCCCCCC
Q psy8255 104 RRLYVGNIPFGVTE 117 (117)
Q Consensus 104 RRLYVGNLP~~vtE 117 (117)
-+||||||++.+||
T Consensus 29 L~I~V~NL~~~vte 42 (130)
T 3zzy_A 29 LRIIVENLFYPVTL 42 (130)
T ss_dssp EEEEEESCCSCCCH
T ss_pred EEEEECCCCCCCCH
Confidence 48999999999986
No 49
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=88.90 E-value=0.17 Score=36.69 Aligned_cols=17 Identities=35% Similarity=0.743 Sum_probs=14.2
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
.....|||+|||++++|
T Consensus 86 ~~~~~l~V~nLp~~~te 102 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSD 102 (177)
T ss_dssp TTCEEEEEECCCSCCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 34569999999999985
No 50
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=88.24 E-value=0.19 Score=36.76 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=13.7
Q ss_pred ccceeEeecCCC-CCCC
Q psy8255 102 QARRLYVGNIPF-GVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~-~vtE 117 (117)
....|||||||+ .++|
T Consensus 33 ~~~~l~V~nLp~~~~te 49 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTP 49 (229)
T ss_dssp CCSEEEEESCCTTTCCH
T ss_pred CCCEEEEeCCCcccCCH
Confidence 457999999999 8875
No 51
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=88.09 E-value=0.22 Score=34.05 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=15.8
Q ss_pred cccccceeEeecCCCCCCC
Q psy8255 99 ITRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 99 ~SRQaRRLYVGNLP~~vtE 117 (117)
.......|||+|||+.+||
T Consensus 95 ~~~~~~~l~v~nlp~~~t~ 113 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITE 113 (175)
T ss_dssp TTGGGGEEEEESCCSSCCH
T ss_pred ccccCCEEEEeCCCCCCCH
Confidence 3456789999999999875
No 52
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=87.99 E-value=0.14 Score=37.45 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.2
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
....+.|||||||+.+||
T Consensus 106 ~~~~~~l~V~nLp~~~t~ 123 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATL 123 (193)
T ss_dssp HHHHTEEEEECCCTTCCH
T ss_pred ccccCEEEecCCCCcCCH
Confidence 456789999999999875
No 53
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=87.94 E-value=0.17 Score=35.47 Aligned_cols=14 Identities=21% Similarity=0.142 Sum_probs=12.4
Q ss_pred ceeEeecCCCCCCC
Q psy8255 104 RRLYVGNIPFGVTE 117 (117)
Q Consensus 104 RRLYVGNLP~~vtE 117 (117)
-.|||||||+.+||
T Consensus 26 l~l~V~NL~~~vt~ 39 (124)
T 2e5i_A 26 LLLSIQNPLYPITV 39 (124)
T ss_dssp EEEEEESCCSCCCH
T ss_pred EEEEEcCcCCCCCH
Confidence 38999999999985
No 54
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=87.49 E-value=0.19 Score=34.77 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=13.7
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||+|||+.+||
T Consensus 103 ~~~~l~V~nLp~~~t~ 118 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEE 118 (196)
T ss_dssp CCSEEEEECCTTTCCH
T ss_pred CcceEEEeCCCCCCCH
Confidence 3478999999999885
No 55
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=86.78 E-value=0.24 Score=33.38 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=14.0
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||+|||+.+||
T Consensus 94 ~~~~l~v~nl~~~~t~ 109 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTE 109 (175)
T ss_dssp GGSEEEEESCCTTCCH
T ss_pred CCCeEEEcCCCCcCCH
Confidence 5678999999999885
No 56
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=85.59 E-value=0.27 Score=33.28 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=13.8
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||+|||+.++|
T Consensus 93 ~~~~l~v~nlp~~~t~ 108 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLND 108 (172)
T ss_dssp TTTCEEEECCCTTCCH
T ss_pred CCCEEEEEcCCCcCCH
Confidence 4689999999999875
No 57
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=85.52 E-value=0.41 Score=33.11 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=14.5
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
.....|||+|||+.++|
T Consensus 112 ~~~~~l~v~nl~~~~~~ 128 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLND 128 (198)
T ss_dssp CCCCEEEEECCCTTCCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 45689999999999875
No 58
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=85.11 E-value=0.21 Score=33.67 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.1
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
.....|||+|||+.+||
T Consensus 85 ~~~~~l~V~nlp~~~t~ 101 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRP 101 (167)
T ss_dssp HHCEEEEEEEECTTCCH
T ss_pred cCCCeEEECCCCCCCCH
Confidence 34668999999999875
No 59
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=84.46 E-value=0.25 Score=36.30 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=12.8
Q ss_pred cceeEeecCCCCCCC
Q psy8255 103 ARRLYVGNIPFGVTE 117 (117)
Q Consensus 103 aRRLYVGNLP~~vtE 117 (117)
...|||+|||+.+||
T Consensus 123 ~~~l~v~NLp~~~t~ 137 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTE 137 (205)
T ss_dssp CSEEEEEEECTTCCH
T ss_pred cceEEEeCCCCCCCH
Confidence 356999999999985
No 60
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=84.33 E-value=0.44 Score=31.70 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=14.7
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
......|||+|||+.+||
T Consensus 84 ~~~~~~l~v~nl~~~~t~ 101 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDD 101 (166)
T ss_dssp CTTCEEEEEESCCTTCCH
T ss_pred CCCCceEEECCCCCCCCH
Confidence 445678999999999875
No 61
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=83.70 E-value=0.38 Score=34.71 Aligned_cols=16 Identities=6% Similarity=0.320 Sum_probs=13.6
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||+|||+.+||
T Consensus 102 ~~~~l~v~nl~~~~t~ 117 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDN 117 (213)
T ss_dssp CTTEEEEESCCTTCCH
T ss_pred ccccceECCcccccHH
Confidence 4568999999999885
No 62
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=83.10 E-value=0.66 Score=30.84 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=14.6
Q ss_pred ccccceeEeecCCCCCCC
Q psy8255 100 TRQARRLYVGNIPFGVTE 117 (117)
Q Consensus 100 SRQaRRLYVGNLP~~vtE 117 (117)
......|||+|||+.++|
T Consensus 85 ~~~~~~l~v~nl~~~~t~ 102 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQ 102 (167)
T ss_dssp GGTTCEEEEESCCTTCCH
T ss_pred cCCCCcEEECCCCCcCCH
Confidence 345678999999999875
No 63
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=81.77 E-value=0.5 Score=33.12 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=13.7
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||+|||+.++|
T Consensus 124 ~~~~l~v~nlp~~~t~ 139 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSD 139 (216)
T ss_dssp TSCEEEEECCCTTCCH
T ss_pred CCcEEEEeCCCCcCCH
Confidence 4479999999999875
No 64
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=81.64 E-value=0.52 Score=35.07 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.0
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||||||+.++|
T Consensus 116 ~~~~l~v~nlp~~~t~ 131 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQ 131 (292)
T ss_dssp CSCEEEEECCCTTCCH
T ss_pred CCCEEEEECCCCCCCH
Confidence 5679999999999875
No 65
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=80.81 E-value=0.6 Score=31.30 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=14.2
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
.....|||+|||+.++|
T Consensus 87 ~~~~~l~v~nl~~~~t~ 103 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITD 103 (168)
T ss_dssp TTTCEEEEESCCTTCCH
T ss_pred CCCCCEEEeCCCCCCCH
Confidence 45678999999999875
No 66
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=80.44 E-value=0.58 Score=34.63 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.8
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||+|||+.+||
T Consensus 206 ~~~~l~v~nl~~~~~~ 221 (282)
T 3pgw_A 206 PNHILFLTNLPEETNE 221 (282)
T ss_pred CCCEEEEeCCCCcCCH
Confidence 4578999999999885
No 67
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=78.36 E-value=0.74 Score=32.14 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=13.2
Q ss_pred cceeEeecCCCCCCC
Q psy8255 103 ARRLYVGNIPFGVTE 117 (117)
Q Consensus 103 aRRLYVGNLP~~vtE 117 (117)
...|||+|||+.++|
T Consensus 120 ~~~l~v~nl~~~~~~ 134 (198)
T 1qm9_A 120 SATLHLSNIPPSVSE 134 (198)
T ss_dssp CCEEEECCCCTTCCH
T ss_pred ccEEEEeCCCCCCCH
Confidence 678999999999875
No 68
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=78.24 E-value=0.74 Score=34.08 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.6
Q ss_pred ccceeEeecCCCCCCC
Q psy8255 102 QARRLYVGNIPFGVTE 117 (117)
Q Consensus 102 QaRRLYVGNLP~~vtE 117 (117)
....|||+|||+.+||
T Consensus 94 ~~~~l~v~nlp~~~t~ 109 (284)
T 3smz_A 94 TDALLCVANLPPSLTQ 109 (284)
T ss_dssp CSCEEEEESCCTTCCH
T ss_pred CCCEEEEcCCCCcCCH
Confidence 4568999999999885
No 69
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.35 E-value=0.54 Score=32.62 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.5
Q ss_pred cceeEe--ecCCCCCCC
Q psy8255 103 ARRLYV--GNIPFGVTE 117 (117)
Q Consensus 103 aRRLYV--GNLP~~vtE 117 (117)
.+.||| ||||++++|
T Consensus 25 t~~L~V~Ng~L~~~~te 41 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSR 41 (114)
T ss_dssp CSEEEEETCTGGGTCCH
T ss_pred CCEEEEECCCCCCCCCH
Confidence 357999 889999986
No 70
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=77.34 E-value=0.85 Score=33.21 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=13.2
Q ss_pred cceeEeecCCCCCCC
Q psy8255 103 ARRLYVGNIPFGVTE 117 (117)
Q Consensus 103 aRRLYVGNLP~~vtE 117 (117)
...|||+|||+.++|
T Consensus 151 ~~~l~V~nlp~~~t~ 165 (229)
T 2adc_A 151 SATLHLSNIPPSVSE 165 (229)
T ss_dssp CSEEEEECCCTTCCH
T ss_pred CCEEEEeCCCccCCH
Confidence 578999999999875
No 71
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=77.27 E-value=0.85 Score=33.97 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.1
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
.....|||+|||+.+||
T Consensus 94 ~~~~~l~v~nl~~~~t~ 110 (261)
T 3sde_A 94 THGAALTVKNLSPVVSN 110 (261)
T ss_dssp CCSSEEEEESCCTTCCH
T ss_pred ccCCcccccCCCCCCCH
Confidence 34568999999999885
No 72
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=75.74 E-value=0.58 Score=36.32 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.2
Q ss_pred cccccceeEeecCCCCC
Q psy8255 99 ITRQARRLYVGNIPFGV 115 (117)
Q Consensus 99 ~SRQaRRLYVGNLP~~v 115 (117)
...+.+.|||||||+.+
T Consensus 130 ~~~~~rtLfVgnL~~~~ 146 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGAL 146 (240)
T ss_dssp -CCCCCEEEEECTTGGG
T ss_pred cccCCceeecCCCChhh
Confidence 35678999999999987
No 73
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=67.12 E-value=2.1 Score=31.60 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=13.7
Q ss_pred cccceeEeecCCCCC-CC
Q psy8255 101 RQARRLYVGNIPFGV-TE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~v-tE 117 (117)
-....|||+|||+.+ +|
T Consensus 182 ~~~~~l~v~nlp~~~~~~ 199 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDV 199 (284)
T ss_dssp TSCSEEEEECCCTTCCCH
T ss_pred CCccEEEEecCCcccCCH
Confidence 456789999999995 63
No 74
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=45.42 E-value=7.9 Score=25.90 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=10.7
Q ss_pred cccceeEeecCCCCCCC
Q psy8255 101 RQARRLYVGNIPFGVTE 117 (117)
Q Consensus 101 RQaRRLYVGNLP~~vtE 117 (117)
.....|||||| ++||
T Consensus 37 ~~~~~lfVgnl--~~te 51 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTP 51 (121)
T ss_dssp CCCCEEEEECS--SCCH
T ss_pred CCCCEEEEcCC--CCCH
Confidence 35679999996 4553
No 75
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=29.54 E-value=13 Score=23.13 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=8.9
Q ss_pred cceeEeecCC
Q psy8255 103 ARRLYVGNIP 112 (117)
Q Consensus 103 aRRLYVGNLP 112 (117)
...||||||+
T Consensus 91 ~~~ifvg~L~ 100 (101)
T 2hvz_A 91 LEVLFNGPLE 100 (101)
T ss_dssp CSCCCSCCCC
T ss_pred CCceecCCCC
Confidence 6789999997
No 76
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.73 E-value=20 Score=29.06 Aligned_cols=12 Identities=25% Similarity=0.058 Sum_probs=10.2
Q ss_pred eeEeecCCCCCC
Q psy8255 105 RLYVGNIPFGVT 116 (117)
Q Consensus 105 RLYVGNLP~~vt 116 (117)
=+.||||||.++
T Consensus 144 ~~vvaNLPYnIs 155 (353)
T 1i4w_A 144 FLTVANVTGEGS 155 (353)
T ss_dssp EEEEEECCSTTH
T ss_pred eEEEEECCCchH
Confidence 479999999875
No 77
>1no7_A Major capsid protein; novel fold, alpha plus beta, viral capsid protein, folding nucleus, viral protein; 2.90A {Human herpesvirus 1} SCOP: e.48.1.1
Probab=20.20 E-value=29 Score=30.89 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=19.0
Q ss_pred CCCCCCccccccceeEeecCCCC
Q psy8255 92 VPVVGSTITRQARRLYVGNIPFG 114 (117)
Q Consensus 92 ~p~~~~~~SRQaRRLYVGNLP~~ 114 (117)
+|+.+|...+-.-|+.|||||-.
T Consensus 113 ~~~~~~~~~~at~Ri~~GNiP~p 135 (604)
T 1no7_A 113 VPPAGPGEIQATWRVVNGNLPLA 135 (604)
T ss_dssp SCCCSCCCCEEECCCSGGGSCTT
T ss_pred cccccccccccccceecCCCCCC
Confidence 46667778888899999999975
Done!