RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8255
(117 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.0 bits (66), Expect = 0.040
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 102 QARRLYVGNIPFGVTE 117
Q R+L++G + F T+
Sbjct: 5 QLRKLFIGGLSFETTD 20
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 29.3 bits (65), Expect = 0.041
Identities = 14/15 (93%), Positives = 15/15 (100%)
Query: 103 ARRLYVGNIPFGVTE 117
ARRLYVGNIPFG+TE
Sbjct: 1 ARRLYVGNIPFGITE 15
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 28.7 bits (64), Expect = 0.048
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 105 RLYVGNIPFGVTE 117
+L V N+ FGV++
Sbjct: 2 KLLVSNLDFGVSD 14
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 28.5 bits (63), Expect = 0.058
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 104 RRLYVGNIPFGVTE 117
++++VG I E
Sbjct: 3 KKIFVGGIKEDTEE 16
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 28.4 bits (63), Expect = 0.068
Identities = 2/13 (15%), Positives = 9/13 (69%)
Query: 105 RLYVGNIPFGVTE 117
++++G + + T+
Sbjct: 2 KMFIGGLSWQTTQ 14
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 28.4 bits (63), Expect = 0.070
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 104 RRLYVGNIPFGVTE 117
LYV N+P +T+
Sbjct: 7 TNLYVTNLPRTITD 20
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 28.5 bits (63), Expect = 0.076
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 102 QARRLYVGNIPFGVTE 117
Q R+L++G + F T+
Sbjct: 5 QLRKLFIGGLSFETTD 20
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 28.4 bits (63), Expect = 0.091
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 96 GSTITRQARRLYVGNIPFGVTE 117
G Q RL+VGN+P +TE
Sbjct: 1 GEKTFTQRSRLFVGNLPPDITE 22
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 28.2 bits (62), Expect = 0.10
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 101 RQARRLYVGNIPFGVTE 117
+ R +Y+ P T
Sbjct: 4 VKNRSVYIKGFPTDATL 20
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 28.0 bits (62), Expect = 0.12
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 99 ITRQARRLYVGNIPFGVTE 117
+ +++ LYVGN+ F TE
Sbjct: 3 LLKKSCTLYVGNLSFYTTE 21
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 28.1 bits (62), Expect = 0.13
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 100 TRQARRLYVGNIPFGVTE 117
R AR L N+ F +TE
Sbjct: 13 VRAARTLLAKNLSFNITE 30
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 27.2 bits (60), Expect = 0.15
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 105 RLYVGNIPFGVTE 117
+++VG + E
Sbjct: 1 KIFVGGLSPDTPE 13
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 27.8 bits (61), Expect = 0.15
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 100 TRQARRLYVGNIPFGVTE 117
T + R + + N+ + +
Sbjct: 1 TLEGREIMIRNLSTELLD 18
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 27.7 bits (61), Expect = 0.16
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 100 TRQARRLYVGNIPFGVTE 117
Q +YVG + V+E
Sbjct: 6 RNQDATVYVGGLDEKVSE 23
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 27.3 bits (60), Expect = 0.17
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 103 ARRLYVGNIPFGVTE 117
A +L++G +P + +
Sbjct: 1 AHKLFIGGLPNYLND 15
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 27.3 bits (60), Expect = 0.18
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 105 RLYVGNIPFGVTE 117
L V +P +T+
Sbjct: 4 NLIVNYLPQDMTD 16
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 27.4 bits (60), Expect = 0.19
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 105 RLYVGNIPFGVTE 117
+++VG + T
Sbjct: 1 KIFVGGLSVNTTV 13
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 27.3 bits (60), Expect = 0.20
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 104 RRLYVGNIPFGVTE 117
LYV +P +T+
Sbjct: 7 ANLYVSGLPKTMTQ 20
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 27.4 bits (60), Expect = 0.21
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 96 GSTITRQARRLYVGNIPFGVTE 117
GS+ + + RL+V N+ + +E
Sbjct: 1 GSSGSSGSGRLFVRNLSYTSSE 22
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 27.1 bits (59), Expect = 0.23
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 106 LYVGNIPFGVTE 117
+ V N+P +
Sbjct: 3 VLVKNLPKSYNQ 14
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 26.7 bits (58), Expect = 0.25
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 106 LYVGNIPFGVTE 117
LY+ + G T+
Sbjct: 1 LYIRGLQPGTTD 12
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 27.1 bits (59), Expect = 0.25
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 104 RRLYVGNIPFGVTE 117
L++ N P T+
Sbjct: 2 CTLWMTNFPPSYTQ 15
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 27.4 bits (60), Expect = 0.25
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 101 RQARRLYVGNIPFGVTE 117
+ LY+ N+P + E
Sbjct: 16 QDPTNLYISNLPLSMDE 32
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.4 bits (60), Expect = 0.27
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 101 RQARRLYVGNIPFGVTE 117
R R ++VGNIP+ TE
Sbjct: 6 RSLRSVFVGNIPYEATE 22
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 27.0 bits (59), Expect = 0.28
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 104 RRLYVGNIPFGVTE 117
L V + TE
Sbjct: 10 CCLGVFGLSLYTTE 23
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 26.8 bits (58), Expect = 0.30
Identities = 3/12 (25%), Positives = 6/12 (50%)
Query: 106 LYVGNIPFGVTE 117
+ + +P VT
Sbjct: 1 ILIRGLPGDVTN 12
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.0 bits (59), Expect = 0.30
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 104 RRLYVGNIPFGVTE 117
L++ NIP V+E
Sbjct: 11 ATLHLSNIPPSVSE 24
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 27.0 bits (59), Expect = 0.32
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 105 RLYVGNIPFGVTE 117
RL++G IP
Sbjct: 3 RLFIGGIPKMKKR 15
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.5 bits (58), Expect = 0.36
Identities = 2/13 (15%), Positives = 9/13 (69%)
Query: 105 RLYVGNIPFGVTE 117
++++G + + T+
Sbjct: 1 KMFIGGLSWDTTK 13
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 26.4 bits (58), Expect = 0.41
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 101 RQARRLYVGNIPFGVTE 117
+ ++ V NIPF +
Sbjct: 6 QTTSKILVRNIPFQANQ 22
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 26.7 bits (58), Expect = 0.45
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 100 TRQARRLYVGNIPFGVTE 117
+ + +++ N+ F E
Sbjct: 5 VTEGKTVFIRNLSFDSEE 22
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 26.1 bits (57), Expect = 0.47
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 99 ITRQARRLYVGNIPFGVTE 117
+ LYV N+ +E
Sbjct: 4 TMSSVKILYVRNLMLSTSE 22
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 26.2 bits (57), Expect = 0.47
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 104 RRLYVGNIPFGVTE 117
L V +P +T+
Sbjct: 3 TNLIVNYLPQNMTQ 16
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 26.6 bits (58), Expect = 0.49
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 104 RRLYVGNIPFGVTE 117
RL+VG + +
Sbjct: 18 TRLWVGGLGPNTSL 31
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 26.2 bits (57), Expect = 0.50
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 102 QARRLYVGNIPFGVTE 117
+ L+V +I E
Sbjct: 6 EGWILFVTSIHEEAQE 21
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 26.2 bits (57), Expect = 0.52
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 101 RQARRLYVGNIPFGVTE 117
Q R LYVGN+ VTE
Sbjct: 6 GQPRTLYVGNLSRDVTE 22
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
subunit, Orc1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 217
Score = 26.8 bits (59), Expect = 0.54
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 4 DRDKDRERDRRRRSRSRDHKKRSRSRDRRS 33
++ D ++ R K R S
Sbjct: 19 TDEQGNIIDGGQKRLRRRGAKTEHYLKRSS 48
Score = 24.9 bits (54), Expect = 2.4
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 3 EDRDKDRERDRRRRSRSRDHKKRSRSRD 30
+ D + R RR ++ RS D
Sbjct: 22 QGNIIDGGQKRLRRRGAKTEHYLKRSSD 49
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 26.0 bits (57), Expect = 0.58
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 106 LYVGNIPFGVTE 117
LYVG++ VTE
Sbjct: 3 LYVGDLHPDVTE 14
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 26.1 bits (57), Expect = 0.61
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 100 TRQARRLYVGNIPFGVTE 117
+ + +Y G I G+T+
Sbjct: 15 SPKNCTVYCGGIASGLTD 32
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.9 bits (56), Expect = 0.72
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 99 ITRQARRLYVGNIPFGVTE 117
+ +L+VG + F E
Sbjct: 1 MASDEGKLFVGGLSFDTNE 19
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.9 bits (56), Expect = 0.74
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 102 QARRLYVGNIPFGVTE 117
+++VG +P+ T+
Sbjct: 9 TFTKIFVGGLPYHTTD 24
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.9 bits (56), Expect = 0.79
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 103 ARRLYVGNIPFGVTE 117
+ + V N+P
Sbjct: 5 SSGILVKNLPQDSNC 19
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 25.8 bits (56), Expect = 0.82
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 101 RQARRLYVGNIPFGVTE 117
+RL+V NIPF +
Sbjct: 9 STPKRLHVSNIPFRFRD 25
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 26.0 bits (56), Expect = 0.87
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 75 HVSPSQYKAMQAAAAAAVPVVGSTITRQA-RRLYVGNIPFGVTE 117
+ +Q + +Q +P R L V IP V E
Sbjct: 13 YGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDE 56
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.8 bits (56), Expect = 0.92
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 102 QARRLYVGNIPFGVTE 117
Q R+L++G + F TE
Sbjct: 19 QFRKLFIGGLSFETTE 34
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 25.4 bits (55), Expect = 0.97
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 105 RLYVGNIPFGVTE 117
+LY+GN+ VT
Sbjct: 3 KLYIGNLSPAVTA 15
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 25.4 bits (55), Expect = 0.98
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 101 RQARRLYVGNIPFGVTE 117
R +Y+ N+ + +
Sbjct: 1 RPNHTIYINNLNEKIKK 17
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 25.1 bits (54), Expect = 1.2
Identities = 3/12 (25%), Positives = 8/12 (66%)
Query: 106 LYVGNIPFGVTE 117
+++GN+ + E
Sbjct: 1 IFIGNLDPEIDE 12
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 25.0 bits (54), Expect = 1.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 104 RRLYVGNIPFGVTE 117
R LYVG + V +
Sbjct: 6 RVLYVGGLAEEVDD 19
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.1 bits (54), Expect = 1.6
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 100 TRQARRLYVGNIPFGVTE 117
++GN+P+ VTE
Sbjct: 12 KSPPYTAFLGNLPYDVTE 29
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.9 bits (54), Expect = 1.6
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 100 TRQARRLYVGNIPFGVTE 117
++ L V +P+ TE
Sbjct: 5 VQKTSDLIVLGLPWKTTE 22
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 24.6 bits (53), Expect = 1.8
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 104 RRLYVGNIPFGVTE 117
++VG +TE
Sbjct: 6 SGVFVGRCTGDMTE 19
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 24.6 bits (53), Expect = 1.8
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 106 LYVGNIPFGVTE 117
L++ N+ F TE
Sbjct: 1 LFIKNLNFSTTE 12
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 24.7 bits (53), Expect = 2.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 104 RRLYVGNIPFGVTE 117
+ LY+ N+ VTE
Sbjct: 19 KVLYLKNLSPRVTE 32
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 24.6 bits (53), Expect = 2.1
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 104 RRLYVGNIPFGVTE 117
+ V N+PF V+
Sbjct: 10 TIIKVQNMPFTVSI 23
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 24.6 bits (53), Expect = 2.5
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 104 RRLYVGNIPFGVTE 117
R+ V N+ + VT
Sbjct: 8 LRIIVENLFYPVTL 21
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 24.4 bits (52), Expect = 2.7
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 104 RRLYVGNIPFGVTE 117
++V + V E
Sbjct: 16 PVVHVRGLCESVVE 29
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 24.4 bits (52), Expect = 2.8
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 101 RQARRLYVGNIPFGVTE 117
+YV + VT
Sbjct: 6 SDNSAIYVQGLNDSVTL 22
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 24.3 bits (52), Expect = 3.0
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 101 RQARRLYVGNIPFGVTE 117
R+YVGN+P +
Sbjct: 12 NNDCRIYVGNLPPDIRT 28
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 24.2 bits (52), Expect = 3.5
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 101 RQARRLYVGNIPFGVTE 117
R AR ++ + +
Sbjct: 16 RDARTVFCMQLAARIRP 32
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 23.9 bits (51), Expect = 3.9
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 104 RRLYVGNIPFGVTE 117
+ V N+ E
Sbjct: 9 ATIRVTNLSEDTRE 22
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 23.3 bits (49), Expect = 5.7
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 104 RRLYVGNIPFGVT 116
+ L++ N+P
Sbjct: 9 QILFLTNLPEETN 21
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 23.5 bits (50), Expect = 5.8
Identities = 2/14 (14%), Positives = 7/14 (50%)
Query: 104 RRLYVGNIPFGVTE 117
L++ ++P +
Sbjct: 19 ANLFIYHLPQEFGD 32
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 22.9 bits (48), Expect = 7.2
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 104 RRLYVGNIPFGVT 116
R L++ +P VT
Sbjct: 9 RVLHIRKLPGEVT 21
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 22.9 bits (48), Expect = 8.9
Identities = 2/16 (12%), Positives = 7/16 (43%)
Query: 102 QARRLYVGNIPFGVTE 117
Q ++V + + +
Sbjct: 7 QKNLVFVVGLSQRLAD 22
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 22.8 bits (48), Expect = 8.9
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 96 GSTITRQARRLYVGNIPFGVTE 117
G R R+ V +P +
Sbjct: 8 GPPTRRSDFRVLVSGLPPSGSW 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.127 0.362
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 404,295
Number of extensions: 16877
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 92
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)