BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy826
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGCHGDG 235
C G+ C DI+EC D + CS Q CVN EG Y+C Q DP C G
Sbjct: 25 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 81
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGCHGDG 235
C G+ C DI+EC D + CS Q CVN EG Y+C Q DP C G
Sbjct: 65 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 121
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGCHGDG 235
C G+ C DI+EC D + CS Q CVN EG Y+C Q DP C G
Sbjct: 337 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 393
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGCHGDG 235
C G+ C DI+EC D + CS Q CVN EG Y+C Q DP C G
Sbjct: 319 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 375
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGC 231
C G+ C DI+EC D + CS Q CVN EG Y+C Q DP C
Sbjct: 54 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGC 231
C G+ C DI+EC D + CS Q CVN EG Y+C Q DP C
Sbjct: 54 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 175 GPKGCTKCKSGWAADKD-IGCYDINECSDENICSGNQFCVNTEGSYRCM-----QCDPSC 228
G CT C +G+ +D C D+NEC++E CS Q C N+EG+++C + P
Sbjct: 22 GAVQCT-CHTGYRLTEDGRTCQDVNECAEEGYCS--QGCTNSEGAFQCWCEAGYELRPDR 78
Query: 229 NGCHGDGPDMCEACAEGYKLQQ 250
C GP+ A ++Q
Sbjct: 79 RSCKALGPEPVLLFANRIDIRQ 100
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGC 231
C G+ C DI+EC D + CS Q CVN EG Y+C Q DP C
Sbjct: 27 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKAC 79
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGC 231
C G+ C DI+EC D + CS Q CVN EG Y+C Q DP C
Sbjct: 30 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKAC 82
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGC 231
C G+ C DI+EC D + CS Q CVN EG Y+C Q DP C
Sbjct: 27 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKAC 79
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGC 231
C G+ C DI+EC D + CS Q CVN EG Y+C Q DP C
Sbjct: 30 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKAC 82
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 197 INECSDENICSGNQFCVNTEGSYRCM-----QCDPSCNGCHGDGPDMCEACAEGYKLQQ 250
+NEC++E CS Q C N+EG+++C + P C GP+ A ++Q
Sbjct: 1 VNECAEEGYCS--QGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQ 57
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 20/62 (32%)
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICIN 255
D++EC + ++C Q C+NT+GSYRC C GY L N C++
Sbjct: 4 DMDECKEPDVCKHGQ-CINTDGSYRC-------------------ECPFGYILAGNECVD 43
Query: 256 TQ 257
T
Sbjct: 44 TD 45
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 183 KSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDP 226
+SG+ K+ C DI+EC + + C NTEGSYRC +C P
Sbjct: 34 ESGFMMMKN--CMDIDECQRDPLLCRGGVCHNTEGSYRC-ECPP 74
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 164 HASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCM 222
+C + C C +C G+ D C DI+EC + CSG C N G++ C+
Sbjct: 48 QTACPADCDPNTQASC-ECPEGYILDDGFICTDIDECENGGFCSG--VCHNLPGTFECI 103
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 164 HASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCM 222
+C + C C +C G+ D C DI+EC + CSG C N G++ C+
Sbjct: 48 QTACPADCDPNTQASC-ECPEGYILDDGFICTDIDECENGGFCSG--VCHNLPGTFECI 103
>pdb|3B2V|A Chain A, Crystal Structure Of The Extracellular Region Of The
Epidermal Growth Factor Receptor In Complex With The Fab
Fragment Of Imc-11f8
Length = 624
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 23/92 (25%)
Query: 163 CHASCES-GCSTGGPKGCTKCKSGWAADKDIGCYDINECSDE-NICSG--NQFCVNTEGS 218
CHA C GC P+ C C++ EC D+ N+ G +F N+E
Sbjct: 482 CHALCSPEGCWGPEPRDCVSCRNVSRG---------RECVDKCNLLEGEPREFVENSE-- 530
Query: 219 YRCMQCDPSCNG------CHGDGPDMCEACAE 244
C+QC P C C G GPD C CA
Sbjct: 531 --CIQCHPECLPQAMNITCTGRGPDNCIQCAH 560
>pdb|1IVO|A Chain A, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1IVO|B Chain B, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains
Length = 622
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 23/92 (25%)
Query: 163 CHASCES-GCSTGGPKGCTKCKSGWAADKDIGCYDINECSDE-NICSG--NQFCVNTEGS 218
CHA C GC P+ C C++ EC D+ N+ G +F N+E
Sbjct: 482 CHALCSPEGCWGPEPRDCVSCRNVSRG---------RECVDKCNLLEGEPREFVENSE-- 530
Query: 219 YRCMQCDPSCNG------CHGDGPDMCEACAE 244
C+QC P C C G GPD C CA
Sbjct: 531 --CIQCHPECLPQAMNITCTGRGPDNCIQCAH 560
>pdb|3QWQ|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 648
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 23/92 (25%)
Query: 163 CHASCES-GCSTGGPKGCTKCKSGWAADKDIGCYDINECSDE-NICSG--NQFCVNTEGS 218
CHA C GC P+ C C++ EC D+ N+ G +F N+E
Sbjct: 506 CHALCSPEGCWGPEPRDCVSCRNVSRG---------RECVDKCNLLEGEPREFVENSE-- 554
Query: 219 YRCMQCDPSCNG------CHGDGPDMCEACAE 244
C+QC P C C G GPD C CA
Sbjct: 555 --CIQCHPECLPQAMNITCTGRGPDNCIQCAH 584
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC 221
C G++ K C DI+EC N CVNT GS++C
Sbjct: 92 CGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKC 131
>pdb|3I2T|A Chain A, Crystal Structure Of The Unliganded Drosophila Epidermal
Growth Factor Receptor Ectodomain
Length = 551
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 160 CSKCHASCESGCSTGGPKGCTK 181
C KCH SC GC GPK C K
Sbjct: 165 CPKCHESCTHGCWGEGPKNCQK 186
>pdb|3LTF|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTG|A Chain A, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
pdb|3LTG|C Chain C, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
Length = 601
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 160 CSKCHASCESGCSTGGPKGCTK 181
C KCH SC GC GPK C K
Sbjct: 165 CPKCHESCTHGCWGEGPKNCQK 186
>pdb|3U9U|E Chain E, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
pdb|3U9U|F Chain F, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
Length = 625
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 221 CMQCDPSCN-------GCHGDGPDMCEACAE 244
C++CDP C CHG GPD C C+
Sbjct: 527 CVECDPQCEKMEDGLLTCHGPGPDNCTKCSH 557
>pdb|2AHX|A Chain A, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
pdb|2AHX|B Chain B, Crystal Structure Of Erbb4HER4 EXTRACELLULAR DOMAIN
Length = 617
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 221 CMQCDPSCN-------GCHGDGPDMCEACAE 244
C++CDP C CHG GPD C C+
Sbjct: 528 CVECDPQCEKMEDGLLTCHGPGPDNCTKCSH 558
>pdb|3U7U|A Chain A, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|B Chain B, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|C Chain C, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|D Chain D, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|E Chain E, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|F Chain F, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 615
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 221 CMQCDPSCN-------GCHGDGPDMCEACAE 244
C++CDP C CHG GPD C C+
Sbjct: 527 CVECDPQCEKMEDGLLTCHGPGPDNCTKCSH 557
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 196 DINECSDENIC-SGNQFCVNTEGSYRCMQCDP 226
D+NEC D C SGN CVNT GSY C C P
Sbjct: 2 DVNECLDPTTCISGN--CVNTPGSYIC-DCPP 30
>pdb|1YY9|A Chain A, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 624
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 23/92 (25%)
Query: 163 CHASCES-GCSTGGPKGCTKCKSGWAADKDIGCYDINECSDE-NICSG--NQFCVNTEGS 218
CHA C GC P+ C C++ EC D+ + G +F N+E
Sbjct: 482 CHALCSPEGCWGPEPRDCVSCRNVSRG---------RECVDKCKLLEGEPREFVENSE-- 530
Query: 219 YRCMQCDPSCNG------CHGDGPDMCEACAE 244
C+QC P C C G GPD C CA
Sbjct: 531 --CIQCHPECLPQAMNITCTGRGPDNCIQCAH 560
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 196 DINECSDENIC-SGNQFCVNTEGSYRCMQCDP 226
D+NEC D C SGN CVNT GSY C C P
Sbjct: 2 DVNECLDPTTCISGN--CVNTPGSYIC-DCPP 30
>pdb|1NQL|A Chain A, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf
Length = 624
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 23/92 (25%)
Query: 163 CHASCES-GCSTGGPKGCTKCKSGWAADKDIGCYDINECSDE-NICSG--NQFCVNTEGS 218
CHA C GC P+ C C++ EC D+ + G +F N+E
Sbjct: 482 CHALCSPEGCWGPEPRDCVSCRNVSRG---------RECVDKCKLLEGEPREFVENSE-- 530
Query: 219 YRCMQCDPSCNG------CHGDGPDMCEACAE 244
C+QC P C C G GPD C CA
Sbjct: 531 --CIQCHPECLPQAMNITCTGRGPDNCIQCAH 560
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 181 KCKSGWAAD-KDIGCYDINECSDENICSGNQFCVNTEGSYRC 221
+C G+ + K C DI+ECS EN+C+ Q CVN G Y C
Sbjct: 28 ECPEGYRYNLKSKSCEDIDECS-ENMCA--QLCVNYPGGYTC 66
>pdb|3NJP|A Chain A, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|B Chain B, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 614
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 23/92 (25%)
Query: 163 CHASCES-GCSTGGPKGCTKCKSGWAADKDIGCYDINECSDE-NICSG--NQFCVNTEGS 218
CHA C GC P+ C C++ EC D+ + G +F N+E
Sbjct: 482 CHALCSPEGCWGPEPRDCVSCRNVSRG---------RECVDKCKLLEGEPREFVENSE-- 530
Query: 219 YRCMQCDPSCNG------CHGDGPDMCEACAE 244
C+QC P C C G GPD C CA
Sbjct: 531 --CIQCHPECLPQAMNITCTGRGPDNCIQCAH 560
>pdb|3G5C|A Chain A, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
pdb|3G5C|B Chain B, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
Length = 510
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 118 CKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKT 157
C GNG +CVCN+ + G CN YF D KT
Sbjct: 456 CSGNGVCSNELKCVCNRHWIGSDCNT----YFPHNDDAKT 491
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 110 NVCFGNG---KCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHAS 166
NV G+G C G+G R G CVC++++ G C+E T KD S +
Sbjct: 530 NVYIGDGCLDMCSGHG-RCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWL 588
Query: 167 CESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENI 205
SG C SG A GC + D N+
Sbjct: 589 TVSGGKLS--TVCGAVASGLALHFSGGCSRLLVTVDLNL 625
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,798,586
Number of Sequences: 62578
Number of extensions: 482980
Number of successful extensions: 1125
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 185
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)