RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy826
(329 letters)
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 56.2 bits (136), Expect = 3e-10
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 143 ECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSD 202
C G+ + +C + C C C G+ D C DI+EC +
Sbjct: 27 VCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCE-CPEGYILDDGFICTDIDECEN 85
Query: 203 ENICSGNQFCVNTEGSYRCMQCDP 226
CS C N G++ C C P
Sbjct: 86 GGFCS--GVCHNLPGTFEC-ICGP 106
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 48.9 bits (117), Expect = 2e-07
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 15/112 (13%)
Query: 129 QCVCNKEYTGELC-------NECN-TGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCT 180
C C+ E T + + + E I + + C S CT
Sbjct: 25 ICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCT 84
Query: 181 ------KCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDP 226
C G++ K C DI+EC N CVNT GS++C QC
Sbjct: 85 LCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKC-QCPS 135
Score = 34.6 bits (80), Expect = 0.014
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 18/86 (20%)
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDP---------------SCNGCHGDGPDMCE 240
DI+EC N C N+ GS+ C +C CE
Sbjct: 3 DIDECESSPCI--NGVCKNSPGSFIC-ECSSESTLDPTKTICIETIKGTCWQTVIDGRCE 59
Query: 241 ACAEGYKLQQNICINTQAKSQNTNEN 266
G L+ C + A +
Sbjct: 60 ININGATLKSQCCSSLGAAWGSPCTL 85
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 46.5 bits (111), Expect = 3e-07
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 181 KCKSGWAADKDIG--CYDINECSDENICSGNQFCVNTEGSYRCMQCDP 226
KC G+ + + C DI+EC + + C NTEGSYRC +C P
Sbjct: 28 KCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRC-ECPP 74
Score = 40.4 bits (95), Expect = 5e-05
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDM--CEA---CAEGYKLQQ 250
DI+EC G CVNT G + C +CD G M C C L +
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFEC-KCDE---GYESGFMMMKNCMDIDECQRDPLLCR 57
Query: 251 N-ICINTQ 257
+C NT+
Sbjct: 58 GGVCHNTE 65
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 45.7 bits (109), Expect = 7e-07
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCE 240
C G+ + C D +ECS N C GN C N G + C C+ G CE
Sbjct: 30 CPFGYILAGN-ECVDTDECSVGNPC-GNGTCKNVIGGFEC-TCEE---GFEPGPMMTCE 82
Score = 44.9 bits (107), Expect = 1e-06
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 194 CYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCE---ACAEGYKLQQ 250
D++EC + ++C + C+NT+GSYRC +C G G + C C+ G
Sbjct: 2 AVDMDECKEPDVCK-HGQCINTDGSYRC-ECPF---GYILAG-NECVDTDECSVGNPCGN 55
Query: 251 NICINT 256
C N
Sbjct: 56 GTCKNV 61
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 49.6 bits (118), Expect = 8e-07
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 179 CTKCKSGWAADKDIGCYDINECSDEN----ICSGNQFCVNTEGSYRCMQCDPSCNGCHGD 234
C C G+ + C D++EC+ S CVNT+ + C+ C P G+
Sbjct: 27 CGFCPVGFLGN-GTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPP---RYRGN 82
Query: 235 GPDMCEACAEGYKLQQNICIN 255
P A + Q N
Sbjct: 83 QPVGVGLEAAKTEKQVCEPEN 103
Score = 34.6 bits (79), Expect = 0.041
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 196 DINECSDENICSGNQFCVNTE-GSYRCMQCDP--SCNGCHGDGPDMCEACAEGYKLQQNI 252
D + C N C C + GS+ C C NG H + D C + +
Sbjct: 2 DPDGCLS-NPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKV 60
Query: 253 --CINTQ 257
C+NTQ
Sbjct: 61 PRCVNTQ 67
Score = 30.4 bits (68), Expect = 0.90
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 12/153 (7%)
Query: 105 CLGFPNVCFGNGKCKGNGTRKGNGQC-VCNKEYTGELCNECNTGYFQSYK------DEKT 157
C P++CF K + C C Y G ++ K +
Sbjct: 47 CALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCK 106
Query: 158 ILCSKCH--ASCESGCSTGGPKGCTKCKSGWAADKDIGCY--DINECSDEN-ICSGNQFC 212
CH A C P +C++G+A D I D++ + N +C+ N
Sbjct: 107 DKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATY 166
Query: 213 VNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEG 245
+ + + + D C+ +
Sbjct: 167 HCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDN 199
Score = 27.7 bits (61), Expect = 6.6
Identities = 22/152 (14%), Positives = 38/152 (25%), Gaps = 11/152 (7%)
Query: 104 PCLGFPNVCFGNGKCKGNGT-RKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSK 162
PC + C + +C G +C C Y G + D
Sbjct: 104 PCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG------DGLICGEDSDLDGWPNLN 157
Query: 163 CHASCESGCSTGGPKGCTKCKSGWA-ADKDIGCYDINECSDENICSGNQFCVNTEGSYRC 221
+ + SG DKD ++ D + + + + R
Sbjct: 158 LVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQ 217
Query: 222 MQCDPSCNGCHGDGPDMCEACAEGYKLQQNIC 253
D GD D C ++ +
Sbjct: 218 ADYDKDEV---GDRCDNCPYVHNPAQIDTDNN 246
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 45.8 bits (109), Expect = 1e-06
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDP 226
C G+ C DI+EC D + CS Q CVN EG Y+C QC+
Sbjct: 54 CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGGYKC-QCEE 95
Score = 29.6 bits (67), Expect = 0.40
Identities = 5/49 (10%), Positives = 11/49 (22%), Gaps = 6/49 (12%)
Query: 209 NQFCVNTEGSYRCMQC-DPSCNGCHGDGPDMCEACAEGYKLQQNICINT 256
+ + Y + G E C + +C +
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQGAM----GTNE-CLDNNGGCSYVCNDL 46
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 44.7 bits (106), Expect = 7e-06
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 6/88 (6%)
Query: 143 ECNTGYFQSYKDEKTILCSKCHASCESGC---STGGPKGCTKCKSGWAADKD-IGCYDIN 198
G S L CE ++ C G+ + + DI+
Sbjct: 65 SNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCP-GGEGFRPNPITVILEDID 123
Query: 199 ECSDENICSGNQFCVNTEGSYRCMQCDP 226
EC + C+NT GS++C +C
Sbjct: 124 ECQELPGLCQGGKCINTFGSFQC-RCPT 150
Score = 38.1 bits (89), Expect = 0.001
Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPD-MCEACAEGYKLQQNICI 254
D+NEC D C + CVNT GSY C C P + C G
Sbjct: 2 DVNECLDPTTC-ISGNCVNTPGSYIC-DCPP---DFELNPTRVGCVDTRSGNCYLDIRPR 56
Query: 255 NTQ 257
Sbjct: 57 GDN 59
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 46.2 bits (108), Expect = 9e-06
Identities = 30/192 (15%), Positives = 51/192 (26%), Gaps = 13/192 (6%)
Query: 68 FKVQHSKAKDSDLYTWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGN 127
+ ++ W + C VC +G +
Sbjct: 438 IISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPR 497
Query: 128 GQCVCNKEYTGELC-NECNTGYFQSYKDEKTILCSKCHASCE-----SGCSTGGPKGCTK 181
C G C ++C + + + C +CH C C+ GP C +
Sbjct: 498 DCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQ 557
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQF-CVNTEGSYRCMQCDPSC-NGCHGDGPDMC 239
C C + C + N + + C C P+C GC G G C
Sbjct: 558 CAHYIDGPH---C--VKTCPAGVMGENNTLVWKYADAGHVCHLCHPNCTYGCTGPGLRGC 612
Query: 240 EACAEGYKLQQN 251
+ +
Sbjct: 613 PTNGPKHHHHHH 624
Score = 32.7 bits (73), Expect = 0.16
Identities = 35/199 (17%), Positives = 58/199 (29%), Gaps = 19/199 (9%)
Query: 65 EWWFKVQHSKAKDSDLYTWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTR 124
+ W + + +L K + + +G +G +
Sbjct: 384 QAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNK 443
Query: 125 KGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCES-GCSTGGPKGCTKCK 183
N + + +++ CHA C GC P+ C C+
Sbjct: 444 NLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCR 503
Query: 184 SGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSC------NGCHGDGPD 237
+ EC D+ + E S C+QC P C C G GPD
Sbjct: 504 N---------VSRGRECVDKCKLLEGEPREFVENS-ECIQCHPECLPQAMNITCTGRGPD 553
Query: 238 MCEACAEGYKLQQNICINT 256
C CA + + C+ T
Sbjct: 554 NCIQCA--HYIDGPHCVKT 570
Score = 32.7 bits (73), Expect = 0.16
Identities = 19/169 (11%), Positives = 37/169 (21%), Gaps = 17/169 (10%)
Query: 91 RCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCV-CNKEYTGELC-NECNTGY 148
+ + C G + +C T C+ C K C + C
Sbjct: 185 KLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLM 244
Query: 149 FQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSG 208
+ + G + G KC + S C
Sbjct: 245 LYNPT-------TYQMDVNPEGKYSFGATCVKKCPRN--------YVVTDHGSCVRACGA 289
Query: 209 NQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINTQ 257
+ + + +G +C +C+ C +
Sbjct: 290 DSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNC 338
Score = 30.0 bits (66), Expect = 1.2
Identities = 25/137 (18%), Positives = 37/137 (27%), Gaps = 16/137 (11%)
Query: 115 NGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTG 174
G C+ NG C E + + S + CH C +GC+
Sbjct: 160 LGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGP 219
Query: 175 GPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGD 234
C C+ D C D C T Q D + G +
Sbjct: 220 RESDCLVCR---------KFRDEATCKDT--CPPLMLYNPT-----TYQMDVNPEGKYSF 263
Query: 235 GPDMCEACAEGYKLQQN 251
G + C Y + +
Sbjct: 264 GATCVKKCPRNYVVTDH 280
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 46.4 bits (109), Expect = 9e-06
Identities = 27/181 (14%), Positives = 42/181 (23%), Gaps = 34/181 (18%)
Query: 87 NKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNT 146
+ + C + NG+ + Q VC C
Sbjct: 150 DDNEECGDICP---GTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAE-- 204
Query: 147 GYFQSYKDEKTILCSKCHASCESGCST-GGPKGCTKCKSGWAADKDIGCYDINECSDENI 205
CH+ C CS P C C++ Y C +
Sbjct: 205 -------------GLCCHSECLGNCSQPDDPTKCVACRNF---------YLDGRCVET-- 240
Query: 206 CSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINTQAKSQNTNE 265
C + +RC+ C H + Y + N CI N
Sbjct: 241 CPPPYYHFQD---WRCVNFSF-CQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNS 296
Query: 266 N 266
+
Sbjct: 297 S 297
Score = 44.1 bits (103), Expect = 4e-05
Identities = 34/219 (15%), Positives = 50/219 (22%), Gaps = 35/219 (15%)
Query: 79 DLYTWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTG 138
W I + D + C ++C G K K N + +T
Sbjct: 129 ATIDWSRILDSVEDNHIVLNKDDNEEC---GDICPGTAKGKTNCPATVINGQFVERCWTH 185
Query: 139 ELC-NECNTGYFQSYKDEKTILCSKCHASCESGCST-GGPKGCTKCK------------- 183
C C T + CH+ C CS P C C+
Sbjct: 186 SHCQKVCPTICKSHGCTAE---GLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCP 242
Query: 184 ------SGWAADKDIGCYDINECSDENICSGNQFCVNTEGS--------YRCMQCDPSCN 229
W C D++ + G V Y + C
Sbjct: 243 PPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCT 302
Query: 230 GCHGDGPDMCEACAEGYKLQQNICINTQAKSQNTNENLY 268
C G P +C + N +L
Sbjct: 303 PCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLI 341
Score = 27.6 bits (60), Expect = 8.4
Identities = 22/138 (15%), Positives = 36/138 (26%), Gaps = 28/138 (20%)
Query: 101 DCKPCLGFPNVCFGNGKC-----------KGNGTRKGNGQCVCNKEYTGELCNECNTGYF 149
C C F + +G+C + + + + C+
Sbjct: 224 KCVACRNF----YLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVI 279
Query: 150 QS-----------YKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDIN 198
+ + +LC+ C C C T +A + GC IN
Sbjct: 280 HNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVC-HLLEGEKTIDSVT-SAQELRGCTVIN 337
Query: 199 ECSDENICSGNQFCVNTE 216
NI GN E
Sbjct: 338 GSLIINIRGGNNLAAELE 355
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 44.4 bits (104), Expect = 3e-05
Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 4/119 (3%)
Query: 160 CSKCHASCESGCS-TGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGS 218
C + C C+ C C G+ C DI+EC D + CS Q CVN EG
Sbjct: 3 CLDNNGGCSHVCNDLKIGYECL-CPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEGG 59
Query: 219 YRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINTQAKSQNTNENLYRYGVYVGLC 277
Y+C + H + A + ++ + V L
Sbjct: 60 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Score = 28.3 bits (62), Expect = 3.6
Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 7/122 (5%)
Query: 126 GNGQC--VCNKEYTGELCNECNTGYFQSYKDEKTILCSKC--HASCESGCSTGGPKGCTK 181
NG C VCN G C C G+ Q + +C +C C +
Sbjct: 6 NNGGCSHVCNDLKIGYEC-LCPDGF-QLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ 63
Query: 182 CKSGWAADKD-IGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCE 240
C+ G+ D C + + + ++ T P+ ++
Sbjct: 64 CEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVAS 123
Query: 241 AC 242
Sbjct: 124 NR 125
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 40.7 bits (96), Expect = 4e-05
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 182 CKSGWAADKD-IGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHG 233
C G+ + C DI+ECS EN+C+ Q CVN G Y C C+G G
Sbjct: 29 CPEGYRYNLKSKSCEDIDECS-ENMCA--QLCVNYPGGYTC-----YCDGKKG 73
Score = 39.6 bits (93), Expect = 8e-05
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDP 226
D++ECS + G C N G + C +C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFEC-ECPE 31
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 43.7 bits (102), Expect = 5e-05
Identities = 25/177 (14%), Positives = 35/177 (19%), Gaps = 21/177 (11%)
Query: 81 YTWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGEL 140
W I + D + C G C
Sbjct: 131 IDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSH--C 188
Query: 141 CNECNTGYFQSYKDEKTILCSKCHASCESGCSTG-GPKGCTKCKSGWAADKDIGCYDINE 199
C T + CH+ C CS P C C++ Y
Sbjct: 189 QKVCPTICKSHGCTAE---GLCCHSECLGNCSQPDDPTKCVACRNF---------YLDGR 236
Query: 200 CSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINT 256
C + C + C + C Y + N CI
Sbjct: 237 CVET--CPPPYYHFQDWRCVNFSFCQDLHHKCKNS----RRQGCHQYVIHNNKCIPE 287
Score = 32.5 bits (73), Expect = 0.17
Identities = 19/129 (14%), Positives = 34/129 (26%), Gaps = 8/129 (6%)
Query: 128 GQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWA 187
+ + ++ +C C G + G +G
Sbjct: 120 EKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDIC-PGTAKGKTNCPATVINGQF 178
Query: 188 ADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYK 247
++ C+ + C EG +C +C+ D P C AC Y
Sbjct: 179 VER---CWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQP--DDPTKCVACRNFY- 232
Query: 248 LQQNICINT 256
C+ T
Sbjct: 233 -LDGRCVET 240
Score = 31.0 bits (69), Expect = 0.65
Identities = 28/175 (16%), Positives = 45/175 (25%), Gaps = 24/175 (13%)
Query: 81 YTWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCV-CNKEYTGE 139
W + K C + L + C GN + +CV C Y
Sbjct: 181 RCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDD-----PTKCVACRNFYLDG 235
Query: 140 LC-NECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDIN 198
C C Y+ ++D + + S C C +GC + N
Sbjct: 236 RCVETCPPPYYH-FQDWRCVNFSFCQDLHHK-CKNSRRQGCHQY-----------VIHNN 282
Query: 199 ECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNIC 253
+C E C ++ C C C + + C
Sbjct: 283 KCIPE--CPSGYTMNSSNLL--CTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC 333
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 43.3 bits (101), Expect = 7e-05
Identities = 24/181 (13%), Positives = 43/181 (23%), Gaps = 23/181 (12%)
Query: 87 NKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNT 146
+ + ++ + P + N + T C +
Sbjct: 128 SLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPS 187
Query: 147 GYFQSYKDEKTILCSKCHASCESGCSTG-GPKGCTKCKSGWAADKDIGCYDINECSDENI 205
+ E CH C CS C C+ Y C
Sbjct: 188 TCGKRACTEN---NECCHPECLGSCSAPDNDTACVACRHY---------YYAGVCVPA-- 233
Query: 206 CSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINTQAKSQNTNE 265
C N + +RC+ D N + +EG+ + C+ N
Sbjct: 234 CPPNTYRFE---GWRCVDRDFCANILSA-----ESSDSEGFVIHDGECMQECPSGFIRNG 285
Query: 266 N 266
+
Sbjct: 286 S 286
Score = 28.3 bits (62), Expect = 3.8
Identities = 25/165 (15%), Positives = 39/165 (23%), Gaps = 12/165 (7%)
Query: 82 TWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKC-----KGNGTRKGNGQCV-CNKE 135
T + RC + C G N C + CV C
Sbjct: 165 TTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHY 224
Query: 136 YTGELC-NECNTGYFQS-----YKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAAD 189
Y +C C ++ + +S G + +C SG+ +
Sbjct: 225 YYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRN 284
Query: 190 KDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGD 234
Y I + T S Q C G+
Sbjct: 285 GSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGN 329
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 41.3 bits (97), Expect = 8e-05
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 194 CYDINECS-DENICSGNQFCVNTEGSYRCMQCDP--SCNGCHGDGPDMCE 240
C D++ECS ++ C + C NT GSY C +C P +
Sbjct: 93 CQDVDECSSGQHQCDSSTVCFNTVGSYSC-RCRPGWKPRHGIPNNQKDTV 141
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 42.8 bits (100), Expect = 1e-04
Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 35/163 (21%)
Query: 91 RCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQ 150
+ C D + +C G+G+C G C+C+ ++TG CN
Sbjct: 519 KYCECDDFSCVRYK----GEMCSGHGQCS-------CGDCLCDSDWTGYYCNCTTR--TD 565
Query: 151 SYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQ 210
+ +LCS CE G C + G G + + C+ +
Sbjct: 566 TCMSSNGLLCS-GRGKCECGS-------CVCIQPGS-----YGDTCEKCPTCPDACTFKK 612
Query: 211 FCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNIC 253
CV +C G D C + + + +
Sbjct: 613 ECV---------ECKKFDRGALHDENTCNRYCRDEIESVKELK 646
Score = 39.3 bits (91), Expect = 0.001
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 11/119 (9%)
Query: 93 CPVDHYGADC-KPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKE-YTGELCNECNTGYFQ 150
C D G C + C G G + G CVC + G+ C +C T
Sbjct: 549 CDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCE-CGSCVCIQPGSYGDTCEKCPTCPDA 607
Query: 151 SYKDEKTILCSKCHA-------SCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSD 202
++ + C K +C C +G A + + ++C
Sbjct: 608 CTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAV-NCTYKNEDDCVV 665
Score = 33.9 bits (77), Expect = 0.077
Identities = 26/162 (16%), Positives = 41/162 (25%), Gaps = 25/162 (15%)
Query: 93 CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSY 152
+ DC C + +C G C C + G C EC+ ++
Sbjct: 424 SLIVQVTFDC-DCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQC-ECSEEDYRP- 480
Query: 153 KDEKTILCSKCHASCESG--CSTGGPKGCTKCKSGWAADK-----DIGCYDINECSDENI 205
+ + C C G C C S + + +
Sbjct: 481 SQQDECSPREGQPVCSQRGECLCG---QCV-CHSSDFGKITGKYCECDDFSCV-RYKGEM 535
Query: 206 CSGNQFCVNTEGSYRCM--------QCDPSCNGCHGDGPDMC 239
CSG+ C G C C + C +C
Sbjct: 536 CSGHGQCSC--GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLC 575
Score = 33.1 bits (75), Expect = 0.14
Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 24/150 (16%)
Query: 115 NGKCKGNGTRKGNGQCVCNKEYTGE------LCNECNTGYFQSYKDE----KTILCSKCH 164
N C N G C+ K C +S+ + K L +
Sbjct: 371 NATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVT 430
Query: 165 ASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECS-------DENICSGNQFCVNTEG 217
C+ C +C +G G ++ C + CS + + +
Sbjct: 431 FDCDCACQAQAEPNSHRCNNGN------GTFECGVCRCGPGWLGSQCECSEEDYRPSQQD 484
Query: 218 SYRCMQCDPSCNGCHGDGPDMCEACAEGYK 247
+ P C+ G+ C
Sbjct: 485 ECSPREGQPVCSQ-RGECLCGQCVCHSSDF 513
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 42.7 bits (99), Expect = 1e-04
Identities = 35/172 (20%), Positives = 51/172 (29%), Gaps = 13/172 (7%)
Query: 83 WLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCN 142
W + V + C VC G + C + G +C
Sbjct: 450 WTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICI 509
Query: 143 E-CNTGYFQSYKDEKTILCSKCHASCE------SGCSTGGPKGCTKCKSGWAADKDIGCY 195
E CN + + E +C +C CE C GP CTKC G
Sbjct: 510 ESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFK-----DGPN 564
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDPSC-NGCHGDGPDMCEACAEGY 246
+ +C D + + + C C P+C GC+G C
Sbjct: 565 CVEKCPDGLQGANSFIFKYADPDRECHPCHPNCTQGCNGPTSHDCIYYPWTG 616
Score = 34.6 bits (78), Expect = 0.044
Identities = 30/193 (15%), Positives = 48/193 (24%), Gaps = 6/193 (3%)
Query: 65 EWWFKVQHSKAKDSDLYTWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTR 124
+ W + S+L T + G
Sbjct: 381 QSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNS 440
Query: 125 KGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCES-GCSTGGPKGCTKCK 183
N N+ + T C+ C S GC GP C C+
Sbjct: 441 NLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCR 500
Query: 184 SGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACA 243
I ++ + + CV + C + + CHG GPD C C+
Sbjct: 501 RFSRGRICIESCNLY-DGEFREFENDSICVECDPQ--CEKMEDGLLTCHGPGPDNCTKCS 557
Query: 244 EGYKLQQNICINT 256
+ C+
Sbjct: 558 --HFKDGPNCVEK 568
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 16/130 (12%)
Query: 127 NGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGW 186
G+C E + + + CH C GCS C C +
Sbjct: 170 TGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDCCHRECAGGCSGPKDTDCFACMNFN 229
Query: 187 AADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGY 246
+ + + Q + + N + G + C +
Sbjct: 230 DSGACVTQCPQTFVYNPTTF----------------QLEHNFNAKYTYGAFCVKKCPHNF 273
Query: 247 KLQQNICINT 256
+ + C+
Sbjct: 274 VVDSSSCVRA 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 42.9 bits (100), Expect = 1e-04
Identities = 35/180 (19%), Positives = 58/180 (32%), Gaps = 7/180 (3%)
Query: 85 CINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNEC 144
CI+ ++C DCK N + +G+C+ + + +C
Sbjct: 245 CIHGSRQC----DREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECIT-LDKVCNMARDC 299
Query: 145 NTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDEN 204
+ K+ T C + C C+ C G+ C DI+EC D +
Sbjct: 300 RDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPD 359
Query: 205 ICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINTQAKSQNTN 264
CS Q CVN EG Y+C + H + A + ++
Sbjct: 360 TCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYT 417
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 42.4 bits (99), Expect = 1e-04
Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 10/101 (9%)
Query: 92 CCPVDHYGADCKPCLG-FPNVCFGNGKCKGNGT-RKGNGQCVCNKEYTGELCNECNTGYF 149
C Y + G C G G G C C + TG+ C++C ++
Sbjct: 422 VCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHW 481
Query: 150 QSYKDEKTILCSKCHASCESGCSTGGP----KGCTKCKSGW 186
D C C C+ G + G C
Sbjct: 482 GLSNDLDG--CRPC--DCDLGGALNNSCSEDSGQCSCLPHM 518
Score = 40.8 bits (95), Expect = 5e-04
Identities = 27/173 (15%), Positives = 39/173 (22%), Gaps = 30/173 (17%)
Query: 104 PCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILC--- 160
C G + C +G C+C G C C Y
Sbjct: 255 FCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNA 314
Query: 161 ----------SKCHASCESGCSTGGPKG--CTKCKSGWAADKDIGCYDI----------- 197
S CH +TG G C C+ C
Sbjct: 315 CKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRD 374
Query: 198 ----NECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGY 246
C+ + S N + + C + C+ C EG+
Sbjct: 375 PNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGF 427
Score = 37.0 bits (85), Expect = 0.008
Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 85 CINKLKRCCPVDHYGAD-CKPCLGFPNVCFGNGKCKGNGTR---KGNGQCVCNKEYTGEL 140
C + D + C+PC P G C G GQC C GE
Sbjct: 360 CKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGER 419
Query: 141 CNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGC 179
C+ C G++ E C C +C + G C
Sbjct: 420 CDVCKEGFYD-LSAEDPYGCKSC--ACNPLGTIPGGNPC 455
Score = 28.9 bits (64), Expect = 2.8
Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 93 CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNE 143
C H+G P C G N + +GQC C G CNE
Sbjct: 476 CLPQHWGLSNDLDGCRPCDCDLGG-ALNNSCSEDSGQCSCLPHMIGRQCNE 525
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 41.5 bits (96), Expect = 3e-04
Identities = 21/177 (11%), Positives = 41/177 (23%), Gaps = 18/177 (10%)
Query: 83 WLCINKLKRCCPVDHYGADCKP-CLGFPNVCFGNGKCKGNGTRKGNGQCV-CNKEYTGEL 140
W + + C C G + +C T C+ C K
Sbjct: 176 WGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEAT 235
Query: 141 C-NECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINE 199
C + C + + + + S + C KC + C
Sbjct: 236 CKDTCPPLMLYNPTTYQMDVNPEGKYSFGATC-------VKKCPRNYVVTDHGSCVRA-- 286
Query: 200 CSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINT 256
C + + + +G +C +C+ C +
Sbjct: 287 ------CGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKN 337
Score = 39.9 bits (92), Expect = 0.001
Identities = 25/137 (18%), Positives = 37/137 (27%), Gaps = 16/137 (11%)
Query: 115 NGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTG 174
G C+ NG C E + + S + CH C +GC+
Sbjct: 160 LGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGP 219
Query: 175 GPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGD 234
C C+ D C D C T Q D + G +
Sbjct: 220 RESDCLVCR---------KFRDEATCKDT--CPPLMLYNPT-----TYQMDVNPEGKYSF 263
Query: 235 GPDMCEACAEGYKLQQN 251
G + C Y + +
Sbjct: 264 GATCVKKCPRNYVVTDH 280
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 41.2 bits (96), Expect = 4e-04
Identities = 27/153 (17%), Positives = 36/153 (23%), Gaps = 27/153 (17%)
Query: 93 CPVDHYGADC-KPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQS 151
C G+ C + +C G G + C C+ Y LC EC
Sbjct: 542 CHPGFEGSACQCERTTEGCLNPRRVECSGRGRCR-CNVCECHSGYQLPLCQECPG----- 595
Query: 152 YKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADK-DIGCYDI---NECSDENICS 207
C + C S C K + G C + N C
Sbjct: 596 -----------CPSPCGKYISCA---ECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCK 641
Query: 208 GNQFCVNTEGSYRCMQCD-PSCNGCHGDGPDMC 239
Y Q D + D C
Sbjct: 642 ERDSEGCWVA-YTLEQQDGMDRYLIYVDESREC 673
Score = 39.3 bits (91), Expect = 0.001
Identities = 27/171 (15%), Positives = 41/171 (23%), Gaps = 22/171 (12%)
Query: 85 CINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKG-NGQCVCNKEYTGELCNE 143
C+ YG C C + C G G G+C C+ + G C +
Sbjct: 495 CLCHTSDVPGKLIYGQYC-ECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC-Q 552
Query: 144 CNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADK-DIGCYDINECSD 202
C + + + CS C C C SG+ + C
Sbjct: 553 CERTTE-GCLNPRRVECS-GRGRCRCNV-------CE-CHSGYQLPLCQECPGCPSPCGK 602
Query: 203 ENICSGNQFCVN-------TEGSYRCMQCDPSCNGCHGDGPDMCEACAEGY 246
C+ + + G D C Y
Sbjct: 603 YISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEG-CWVAY 652
Score = 34.7 bits (79), Expect = 0.040
Identities = 37/190 (19%), Positives = 54/190 (28%), Gaps = 36/190 (18%)
Query: 67 WFKVQHSKAKDSDLYTWLCINKLKRC-CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRK 125
+ Q + + + L +C C D ++C G G +
Sbjct: 398 CIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDR-------SLCHGKGFLE------ 444
Query: 126 GNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKC--- 182
G C C+ Y G+ C G + S + CS G C +C
Sbjct: 445 -CGICRCDTGYIGKNCECQTQGRSSQELE-----GSCRKDNNSIICSGLGDCVCGQCLCH 498
Query: 183 KSGWAADKDIGCY---DINECSDEN--ICSGNQFCVNTEGSYRCM--------QCDPSCN 229
S G Y D C N +C G + G RC QC+ +
Sbjct: 499 TSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTE 558
Query: 230 GCHGDGPDMC 239
GC C
Sbjct: 559 GCLNPRRVEC 568
Score = 27.4 bits (60), Expect = 9.4
Identities = 18/157 (11%), Positives = 31/157 (19%), Gaps = 21/157 (13%)
Query: 105 CLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNE-----------CNTGYFQSYK 153
+ + + C + +G + G+
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVT 416
Query: 154 DEKTILCS---KCHASCESGCSTGGPKGCTKCK-----SGWAADKDIGCYDINECSDENI 205
+ C + + S C G C C+ G + E
Sbjct: 417 VQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCR 476
Query: 206 CSGNQFCVNTEGSYRC--MQCDPSCNGCHGDGPDMCE 240
N + G C C S CE
Sbjct: 477 KDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCE 513
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 40.1 bits (93), Expect = 7e-04
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 163 CHASCESGCSTGGPKGCTKCKSGWAADKD-IGCYDINECSDENICSGNQFCVNTEGSYRC 221
C C+ G + CT C +G+ +D C D+NEC++E CS Q C N+EG+++C
Sbjct: 13 CAQKCQ--MIRGAVQ-CT-CHTGYRLTEDGRTCQDVNECAEEGYCS--QGCTNSEGAFQC 66
Query: 222 MQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINTQAKSQNTNENLYRYGVY 273
C + PD A G + + + + Y +
Sbjct: 67 -----WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN 113
Score = 31.3 bits (70), Expect = 0.38
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDP 226
C+ N Q C G+ +C C
Sbjct: 2 GEENCNVNN-GGCAQKCQMIRGAVQC-TCHT 30
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 40/284 (14%), Positives = 73/284 (25%), Gaps = 103/284 (36%)
Query: 29 KSEVRLIEIQEKMCSEVSGFLDQCHNFAADIESEIEEWWFKVQHSKAKDSDLYTWLCINK 88
S ++E+ +K+ ++ + +++I+ I +A+ L L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-------QAELRRL---LKSKP 242
Query: 89 LKRCCPV-DHYGADCKPCLGFPNVC-------FGNGKCKGNG----TR-KGNGQCVCNKE 135
+ C V NV F N CK TR K +
Sbjct: 243 YENCLLVLL-------------NVQNAKAWNAF-NLSCK---ILLTTRFKQVTDFLSAAT 285
Query: 136 YTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCY 195
T + + DE L K + C
Sbjct: 286 TTHISLDHHSMTL---TPDEVKSLLLKY----------------------------LDC- 313
Query: 196 DINECSD--ENICSGNQFCVNTEG-SYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNI 252
D + + N ++ S R DG + +K
Sbjct: 314 ---RPQDLPREVLTTNPRRLSIIAESIR-------------DGLAT----WDNWKHVNCD 353
Query: 253 CINTQAKS--QNTNENLYRYGVYVGLCVATYIIFQKNVFIASIV 294
+ T +S YR ++ L +F + I +I+
Sbjct: 354 KLTTIIESSLNVLEPAEYR-KMFDRL-----SVFPPSAHIPTIL 391
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 38.8 bits (89), Expect = 0.002
Identities = 27/166 (16%), Positives = 42/166 (25%), Gaps = 25/166 (15%)
Query: 91 RCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQ 150
+Y D C + G N Q +C G
Sbjct: 147 SNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQKFSKLTC----SPQCAGGRCY 202
Query: 151 SYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQ 210
K CH C GC+ K C CK+ +D C +E C +
Sbjct: 203 GPKP-----RECCHLFCAGGCTGPTQKDCIACKNF---------FDEGVCKEE--CPPMR 246
Query: 211 FCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINT 256
T ++ +P + G + C C+ +
Sbjct: 247 KYNPT---TYVLETNPEGKYAY--GATCVKECPGHLLRDNGACVRS 287
Score = 35.4 bits (80), Expect = 0.023
Identities = 20/113 (17%), Positives = 28/113 (24%), Gaps = 12/113 (10%)
Query: 131 VCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADK 190
+ E + + E GC G C CK+
Sbjct: 449 IRWPAIQKEPEQKVWVNENLRADLCEKNGTICSDQCNEDGCWGAGTDQCLNCKNFNFN-- 506
Query: 191 DIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACA 243
C + C + C C P C C+G G D C+ C
Sbjct: 507 -------GTCIAD--CGYISNAYKFDNRT-CKICHPECRTCNGAGADHCQECV 549
Score = 30.0 bits (66), Expect = 1.2
Identities = 25/132 (18%), Positives = 37/132 (28%), Gaps = 20/132 (15%)
Query: 138 GELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDI 197
E+ + Y+ C KCH SC GC GP C
Sbjct: 143 SEIVSNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGP---------------KNCQKF 187
Query: 198 NECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINTQ 257
++ + C+G + + C GC G C AC + +C
Sbjct: 188 SKLTCSPQCAGGRCYGPKPRECCHLFC---AGGCTGPTQKDCIAC--KNFFDEGVCKEEC 242
Query: 258 AKSQNTNENLYR 269
+ N Y
Sbjct: 243 PPMRKYNPTTYV 254
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 34.0 bits (78), Expect = 0.004
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 26/63 (41%)
Query: 196 DINECSDENICSGN-------QFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKL 248
D++EC+ + C N G Y C +C GY+L
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFC-------------------SCRPGYEL 43
Query: 249 QQN 251
Q++
Sbjct: 44 QED 46
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 37.1 bits (85), Expect = 0.008
Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 9/160 (5%)
Query: 85 CINKLKRCCPVDHY--GADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCN 142
CI+ ++C +D C+ G K K + +G+C+ + +
Sbjct: 227 CIHGSRQCDREYDCKDMSDEVGCVNVTLCE-GPNKFKCH-----SGECIT-LDKVCNMAR 279
Query: 143 ECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSD 202
+C + K+ T C + C C+ C G+ C DI+EC D
Sbjct: 280 DCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD 339
Query: 203 ENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEAC 242
+ CS + +C + A
Sbjct: 340 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY 379
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 36.6 bits (83), Expect = 0.010
Identities = 25/170 (14%), Positives = 38/170 (22%), Gaps = 3/170 (1%)
Query: 77 DSDLYTWLCINKLKRCCPVD--HYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNK 134
W + + +D H G G N
Sbjct: 445 YHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNY 504
Query: 135 EYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGC 194
G CN + + C CH C+ T G A G
Sbjct: 505 SRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGP 564
Query: 195 YDINECSDENICSGNQFCVNTEGSYRCMQCDPSC-NGCHGDGPDMCEACA 243
+ ++ C + + + C C +C GC G C
Sbjct: 565 HCVSSCPHGVLGAKGPIYKYPDVQNECRPCHENCTQGCKGPELQDCLGQT 614
Score = 36.6 bits (83), Expect = 0.011
Identities = 23/131 (17%), Positives = 34/131 (25%), Gaps = 22/131 (16%)
Query: 126 GNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSG 185
G G C +CN F CH C GCS C C+
Sbjct: 177 GPGSEDCQTLTKTICAPQCNGHCFGPNP------NQCCHDECAGGCSGPQDTDCFACRHF 230
Query: 186 WAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEG 245
D C C + Q +P+ + + G +C
Sbjct: 231 ---------NDSGACVPR--CPQPLVY-----NKLTFQLEPNPHTKYQYGGVCVASCPHN 274
Query: 246 YKLQQNICINT 256
+ + Q C+
Sbjct: 275 FVVDQTSCVRA 285
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 34.3 bits (79), Expect = 0.011
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 182 CKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC--------MQCDPSCNGC 231
C+SGW CS +N +C+ G RC C+
Sbjct: 39 CRSGWEGRFCQREVSFLNCSLDN-GGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPA 95
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 36.0 bits (82), Expect = 0.015
Identities = 24/154 (15%), Positives = 36/154 (23%), Gaps = 21/154 (13%)
Query: 84 LCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTR----KGNGQCVCNKEYTGE 139
L + + + A + V G KC + T C C TG
Sbjct: 266 LLRPAVGEIFVDELHLARYFYAISDIKVR-GRCKCNLHATVCVYDNSKLTCECEHNTTGP 324
Query: 140 LCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINE 199
C +C Y G C S + ++
Sbjct: 325 DCGKCKKNYQG----------RPWSPGSYLPIPKGAANACIPSISSIGTNVCD--NELLH 372
Query: 200 CSDENICSGNQFCV---NTEGSYRCMQCDPSCNG 230
C + C N C+ G C + G
Sbjct: 373 CQNGGTCHNNVRCLCPAAYTG-ILCEKLRCEEAG 405
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 35.5 bits (81), Expect = 0.019
Identities = 18/158 (11%), Positives = 33/158 (20%), Gaps = 15/158 (9%)
Query: 101 DCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILC 160
C P P+ C C C+C+ + G C
Sbjct: 279 ACHPGFYGPD-CKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRM----------T 327
Query: 161 SKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYR 220
K + G SGW + + + N +
Sbjct: 328 PKIVDLPDHIEVNSGKFNPICKASGWPLP----TNEEMTLVKPDGTVLHPKDFNHTDHFS 383
Query: 221 CMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINTQA 258
G +C +++ I+ +
Sbjct: 384 VAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKV 421
Score = 28.9 bits (64), Expect = 2.6
Identities = 27/174 (15%), Positives = 39/174 (22%), Gaps = 35/174 (20%)
Query: 85 CINKLKRCCPVDHYGAD---CKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELC 141
I+ + R D +P G C + G C
Sbjct: 139 FIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPEC 198
Query: 142 NECNTGYFQSYKDEKTILCSKCHASCESG-----CSTG--GPKGCTKCKSGWAADKDIGC 194
+ C C G G C+ G
Sbjct: 199 -------------NHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHT-----FGR 240
Query: 195 YDINECSDENICSGNQFCVNTEGSYRC------MQCDPSCNGCHGDGPDMCEAC 242
CS + C FC+ C +QC+ +C+ GPD C
Sbjct: 241 TCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGF-YGPDCKLRC 293
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 35.2 bits (80), Expect = 0.022
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 197 INECSDENICSGNQFCVNTEGSYRC-----MQCDPSCNGCHGDGPDMC 239
+NEC++E CS Q C N+EG+++C + P C GP+
Sbjct: 1 VNECAEEGYCS--QGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPV 46
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 35.4 bits (80), Expect = 0.024
Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 19/152 (12%)
Query: 112 CFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGC 171
G+G + + ++ +++ + C++ C G
Sbjct: 439 ELGSGLALIHRNAHLCFVHTVPWDQLFRNPHQALLHSGNRPEEDCGLEGLVCNSLCAHGH 498
Query: 172 STG-GPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSC-- 228
G GP C C + + + + S + C+ C P C
Sbjct: 499 CWGPGPTQCVNCSHFLRGQECVEECRVWKGLPREYVSDKR----------CLPCHPECQP 548
Query: 229 ----NGCHGDGPDMCEACAEGYKLQQNICINT 256
C G D C ACA + + C+
Sbjct: 549 QNSSETCFGSEADQCAACA--HYKDSSSCVAR 578
Score = 31.9 bits (71), Expect = 0.28
Identities = 23/157 (14%), Positives = 38/157 (24%), Gaps = 18/157 (11%)
Query: 83 WLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCN 142
W + + + + C VC C+ G+ C
Sbjct: 461 WDQLFRNPHQALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECV 520
Query: 143 E-CNTGYFQSYKDEKTILCSKCHASCE-----SGCSTGGPKGCTKCKSGWAADKDIGCYD 196
E C + C CH C+ C C C D
Sbjct: 521 EECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCFGSEADQCAACAHY---------KD 571
Query: 197 INECSDENIC-SGNQFCVNTEGSYRCMQCDPSCNGCH 232
+ C C SG + ++ ++ + C C
Sbjct: 572 SSSCVAR--CPSGVKPDLSYMPIWKYPDEEGICQPCP 606
Score = 30.7 bits (68), Expect = 0.77
Identities = 20/191 (10%), Positives = 48/191 (25%), Gaps = 4/191 (2%)
Query: 78 SDLYTWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYT 137
D + W + + + C C G + +C T + C+ +
Sbjct: 179 KDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFN 238
Query: 138 --GELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCY 195
G C + +++ + + + C T P + G
Sbjct: 239 HSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNN 298
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICIN 255
E + E+ + C G D + K+ ++
Sbjct: 299 Q--EVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCKKIFGSLAFL 356
Query: 256 TQAKSQNTNEN 266
++ + +
Sbjct: 357 PESFDGDPSSG 367
Score = 30.4 bits (67), Expect = 0.99
Identities = 24/205 (11%), Positives = 40/205 (19%), Gaps = 17/205 (8%)
Query: 90 KRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYF 149
K ++ A C + G C + C
Sbjct: 149 KDVFRKNNQLAPVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKG 208
Query: 150 QSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGN 209
+ CH C +GC+ C C C C + +
Sbjct: 209 RLP-------TDCCHEQCAAGCTGPKHSDCLACLHFN---HSGICEL--HCPALVTYNTD 256
Query: 210 QFCVNTEGSYRCMQCDPSCNGCHGDGPDM-----CEACAEGYKLQQNICINTQAKSQNTN 264
F R C + C + + + +
Sbjct: 257 TFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKP 316
Query: 265 ENLYRYGVYVGLCVATYIIFQKNVF 289
YG+ + I NV
Sbjct: 317 CARVCYGLGMEHLRGARAITSDNVQ 341
Score = 27.3 bits (59), Expect = 9.8
Identities = 11/118 (9%), Positives = 23/118 (19%)
Query: 115 NGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTG 174
G+ + G C + ++ T C KC C C
Sbjct: 265 EGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGL 324
Query: 175 GPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCH 232
G + ++ + + + + G
Sbjct: 325 GMEHLRGARAITSDNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFETL 382
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 35.3 bits (80), Expect = 0.028
Identities = 24/145 (16%), Positives = 38/145 (26%), Gaps = 16/145 (11%)
Query: 90 KRCCPVDHYGADCKP-CLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGY 148
+ A C CL ++ + C C++C
Sbjct: 14 ESLSAGSVQRARCASRCL---SLQITRISAFFQHFQNNGSLVWCQNHKQ---CSKCLEPC 67
Query: 149 FQSYKDEKTILCSKC-------HASCESGCSTGGPKGCTKCKSGWAADKDIGCYD--INE 199
+S K S C C + C K A +K G +
Sbjct: 68 KESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVES 127
Query: 200 CSDENICSGNQFCVNTEGSYRCMQC 224
C +N CSG + C + + C
Sbjct: 128 CEVDNECSGVKKCCSNGCGHTCQVP 152
Score = 28.0 bits (61), Expect = 5.0
Identities = 14/104 (13%), Positives = 24/104 (23%), Gaps = 9/104 (8%)
Query: 141 CNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINEC 200
++ ++C + C S T ++ + + C
Sbjct: 4 PGAAAARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGS---------LVWC 54
Query: 201 SDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAE 244
+ CS G R QC C C E
Sbjct: 55 QNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCE 98
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 34.9 bits (79), Expect = 0.031
Identities = 27/147 (18%), Positives = 35/147 (23%), Gaps = 33/147 (22%)
Query: 102 CKPCLGFPNVCFGNGKC--KGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTIL 159
C VC G+ + QC C G C+ C G+ Q
Sbjct: 263 GGRC-----VCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPW------ 311
Query: 160 CSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSY 219
+T C C A CY E G
Sbjct: 312 ---------KPATTDSANECQSCNCHGHAY---DCYYDPEVDRREASQNQDNVYQGGG-- 357
Query: 220 RCMQCDPSCNGCHGDGPDMCEACAEGY 246
C+ C G + CE C G+
Sbjct: 358 VCLDCQHHTTGIN------CERCLPGF 378
Score = 33.3 bits (75), Expect = 0.10
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Query: 93 CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCV-CNKEYTGELCNECNTGYFQS 151
C + C P V + +G G C+ C TG C C G+F++
Sbjct: 322 CQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRA 381
Query: 152 YKDEKTI--LCSKC 163
+C
Sbjct: 382 PDQPLDSPHVCRPA 395
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 35.0 bits (80), Expect = 0.032
Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 10/134 (7%)
Query: 93 CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNT----GY 148
CP D + + +PCL C+ NG C + + + C E N
Sbjct: 289 CPADVFHKNGQPCLDNYGYCY-NGNCP-IMYHQCYDLFGADVYEAEDSCFERNQKGNYYG 346
Query: 149 FQSYKDEKTILCSKCHASCESG-CSTGGPKGCTKCKSGWAA-DKDIGC-YDINECSDENI 205
+ ++ I C+ C C P CK ++ D+ G +C+D +
Sbjct: 347 YCRKENGNKIPCAPEDVKCGRLYCKDNSPGQNNPCKMFYSNEDEHKGMVLPGTKCADGKV 406
Query: 206 CSGNQFCVNTEGSY 219
CS N CV+ +Y
Sbjct: 407 CS-NGHCVDVATAY 419
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.035
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 25/49 (51%)
Query: 22 EKQKIYAKSEVRLIEIQEKMCSEVSGFLDQCHNFAAD------IESEIE 64
EKQ + K + L K+ +A D I++ +E
Sbjct: 18 EKQAL-KKLQASL-----KL-------------YADDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.051
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 24/67 (35%)
Query: 19 W-EEEKQKIY---AKSEVRLIEIQEKMCSEVSGFLDQCHNFAADIESEIEEWW--FKVQH 72
W EE+++++ A S+V E +EK A + ++EEW Q
Sbjct: 90 WREEQRKRLQELDAASKVMEQEWREK----------------A--KKDLEEWNQRQSEQV 131
Query: 73 SKAKDSD 79
K K ++
Sbjct: 132 EKNKINN 138
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 33.8 bits (77), Expect = 0.070
Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 17/140 (12%)
Query: 93 CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCV----CNKEYTGELCNECNTGY 148
CP D + KPC C+ NG C QC+ + C + N
Sbjct: 291 CPRDQLQQNGKPCQNNRGYCY-NGDC-----PIMRNQCISLFGSRANVAKDSCFQENLKG 344
Query: 149 FQ----SYKDEKTILCSKCHASCESG-CSTGGPKGCTKCKSGWAA-DKDIGC-YDINECS 201
++ + I C+ C C P+ C ++ D+ G +C
Sbjct: 345 SYYGYCRKENGRKIPCAPQDVKCGRLFCLNNSPRNKNPCNMHYSCMDQHKGMVDPGTKCE 404
Query: 202 DENICSGNQFCVNTEGSYRC 221
D +C+ + CV+ +Y+
Sbjct: 405 DGKVCNNKRQCVDVNTAYQS 424
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 32.1 bits (73), Expect = 0.11
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 183 KSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGC 231
+ DINEC+D + FC N G Y C C P
Sbjct: 103 ERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFC-SCPPEYFLH 150
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 32.7 bits (73), Expect = 0.18
Identities = 22/135 (16%), Positives = 38/135 (28%), Gaps = 9/135 (6%)
Query: 93 CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSY 152
+ G ++C G+G+C G CVC++++ G C+E T
Sbjct: 522 KQQTWAIDNVYIGDGCLDMCSGHGRCV-------QGSCVCDEQWGGLYCDEPETSLPTQL 574
Query: 153 KDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFC 212
KD S + SG G C + D N+ +
Sbjct: 575 KDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGG--CSRLLVTVDLNLTNAEFIQ 632
Query: 213 VNTEGSYRCMQCDPS 227
+ +
Sbjct: 633 FYFMYGCLITPSNRN 647
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 31.6 bits (72), Expect = 0.21
Identities = 32/157 (20%), Positives = 42/157 (26%), Gaps = 40/157 (25%)
Query: 93 CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNE--------- 143
C +YG C C G+ NG C + + G CN
Sbjct: 21 CDDYYYGFGCN------KFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSP 74
Query: 144 ------------CNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKD 191
C G+ Y D+ H C C C++ W
Sbjct: 75 KHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQ------CL-CETNWGGQL- 126
Query: 192 IGC-YDINECSDENICSGNQFCVNTE-GSYRCMQCDP 226
C D+N C C C NT Y+C C
Sbjct: 127 --CDKDLNYCGTHQPCLNGGTCSNTGPDKYQC-SCPE 160
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 30.9 bits (70), Expect = 0.27
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 101 DCKPCLGFPNVCFGNGKCKGNGT-RKGNGQCVCNKEYTGELCNECNTGYFQS 151
CK C C G + + GQC C +G C C+ GY+
Sbjct: 108 KCKAC-----ACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNL 154
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 31.9 bits (71), Expect = 0.28
Identities = 19/141 (13%), Positives = 34/141 (24%), Gaps = 14/141 (9%)
Query: 92 CCPVDHYGADCKPC-LGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQ 150
V +G D P+ C G+G C +G C C+ YT +
Sbjct: 177 QKNVPPFGLDGVYISEPCPSYCSGHGDCI-------SGVCFCDLGYTAAQGTCVSNTPNH 229
Query: 151 SYKDEKTILCSKCHASCESGCSTG-GPKGCTKCKSGWAADKDIGCYDINECSDENICSGN 209
S + + + G GC G + + + +
Sbjct: 230 SEMFD---RFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVPLDTRNIR 286
Query: 210 QFCVNTEGSYRCMQCDPSCNG 230
+ +C
Sbjct: 287 LVQFYIQ--IGSKTSGITCIK 305
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 31.7 bits (71), Expect = 0.28
Identities = 26/179 (14%), Positives = 43/179 (24%), Gaps = 26/179 (14%)
Query: 67 WFKVQHSKAKDSDLYTWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKG 126
W + + L T+ + +Y A +G C G+
Sbjct: 212 WVTATDIRVTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASE-CVKNEFD 270
Query: 127 NGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGW 186
C C G C +C + + C C
Sbjct: 271 KLMCNCKHNTYGVDCEKCLPFFND---------------RPWRRATAESASECLPCDCNG 315
Query: 187 AADKDIGCYDINECSDENICSGNQFC--VNTEGSYRCMQCDPSCNGCHGDG-PDMCEAC 242
+ + CY E G+ NT+G +C +C G + C
Sbjct: 316 RSQE---CYFDPELYRSTGHGGHCTNCRDNTDG-AKCERCRE---NFFRLGNTEACSPA 367
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 31.7 bits (71), Expect = 0.30
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 196 DINECS-DENICSGNQFCVNTEGSYRCMQCDP----SCNGCHGDGPDMCEACAEGYKLQQ 250
C+ + + CS + C + + C +C + C +G G +
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCC-RCVANYTGNGRQCVAEGSPQ---RVNGKVKGR 59
Query: 251 NICINTQAKSQNTNENLYRYGV 272
++Q N +L+ Y V
Sbjct: 60 IFVGSSQVPVVFENTDLHSYVV 81
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor;
electron transport; HET: HEM; 2.00A {Desulfovibrio
vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Length = 545
Score = 32.1 bits (70), Expect = 0.30
Identities = 19/155 (12%), Positives = 34/155 (21%), Gaps = 10/155 (6%)
Query: 115 NGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCH---ASCESGC 171
C+ K + C C+ ++ + + C+ CH A +
Sbjct: 199 EDSCRACHGEKPVDKRPALDTAAHTACISCHMDVAKTKAETGPVNCAGCHAPEAQAKFKV 258
Query: 172 STGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGC 231
P+ G E F + C C
Sbjct: 259 VREVPRLDRGQPDAALILPVPGKDAPREMKGT--MKPVAFDHKAHEAKA-----NDCRTC 311
Query: 232 HGDGPDMCEACAEGYKLQQNICINTQAKSQNTNEN 266
H D C AC + + + +
Sbjct: 312 HHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSM 346
Score = 27.8 bits (59), Expect = 5.2
Identities = 17/131 (12%), Positives = 33/131 (25%), Gaps = 4/131 (3%)
Query: 51 QCHNFAADIESEIEEWWFKVQHSKAKDSDLYTWLCINKLKRCCPVDHYGADCKPCLGFPN 110
CH A +++ E + + S + + + + D K +G
Sbjct: 380 VCHVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIPEKVVIGSIA 439
Query: 111 VCFG----NGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHAS 166
+ + G G+ + E C + S C+ CH
Sbjct: 440 KEYQPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTPPKCASCHGK 499
Query: 167 CESGCSTGGPK 177
P
Sbjct: 500 PFDADRGDRPG 510
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 30.7 bits (69), Expect = 0.35
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 183 KSGWAADKDIGCYDINECSDEN--ICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCE 240
K + DI+EC + + C N G + C C H + E
Sbjct: 110 KPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYC-SCRAGYVL-HRNKRTCSE 167
Query: 241 AC 242
Sbjct: 168 QS 169
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 31.2 bits (71), Expect = 0.46
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 104 PCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKC 163
PC+ P C NG C+ + C C+ Y G C K +
Sbjct: 7 PCISQP--CLHNGSCQDSI---WGYTCTCSPGYEGSNCEL-----------AKNECHPER 50
Query: 164 HASCESGCSTGGPKGCTKCKSGWAADKDIG-CYDINECSDENICSGNQFCV 213
C+ C G C G+ +D C ++C+ + S +
Sbjct: 51 TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 101
Score = 28.9 bits (65), Expect = 2.1
Identities = 13/50 (26%), Positives = 16/50 (32%)
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEG 245
NEC E FC+ + SY C G + CA G
Sbjct: 42 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG 91
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron
transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Length = 556
Score = 31.3 bits (68), Expect = 0.50
Identities = 20/174 (11%), Positives = 34/174 (19%), Gaps = 2/174 (1%)
Query: 94 PVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVC-NKEYTGELCNECNTGYFQSY 152
C G + F + + C N++ C C+
Sbjct: 322 VKIDNCTTCHTLEGVKDGNFVQIEKAMHQPDSMKSCVGCHNQKVQAPACAGCHGFMKTGA 381
Query: 153 KDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFC 212
K + C CHA + G K+ D+ +
Sbjct: 382 KPQPEAACGVCHADPVGMDAKTVADG-GLLKATKEQRADVAAATLAARRTTKGTLPADDI 440
Query: 213 VNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICINTQAKSQNTNEN 266
H + A KL + + N
Sbjct: 441 PEFVTIGVLSDKYEPSKLPHRKIVNTLMAAIGDDKLAGTFHTDKATVCAGCHHN 494
Score = 28.2 bits (60), Expect = 4.7
Identities = 19/138 (13%), Positives = 30/138 (21%), Gaps = 5/138 (3%)
Query: 96 DHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDE 155
D C C +G G + G + K
Sbjct: 243 DSGPVSCAGCHDPAMQAKFKVVRDVPRLERGQPDAAMVLPVVGPGAKDTPKGMKGAMKPV 302
Query: 156 KTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNT 215
K H + + C C + + + + + CV
Sbjct: 303 A--FNHKVHEAASNTCRACHHVKIDNCTTCHTLEGVKDGNFVQIEKAMHQPDSMKSCVGC 360
Query: 216 EGSYRCMQCDPSCNGCHG 233
P+C GCHG
Sbjct: 361 HNQ---KVQAPACAGCHG 375
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 31.1 bits (69), Expect = 0.59
Identities = 13/65 (20%), Positives = 15/65 (23%), Gaps = 15/65 (23%)
Query: 84 LCINKLKRC-CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCN 142
L + C C C G G + G C C G LC
Sbjct: 447 LIVELHTLCDCNCSDTQPQAPHC------SDGQGHLQ-------CGVCSCAPGRLGRLC- 492
Query: 143 ECNTG 147
E
Sbjct: 493 ESRGL 497
>2bq4_A Cytochrome C3, basic cytochrome C3; electron transfer, sulfate
reducing bacteria, SAD, heme, iron, electron transport;
HET: HEC; 1.68A {Desulfovibrio africanus}
Length = 116
Score = 29.2 bits (64), Expect = 0.87
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 146 TGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKC 182
++ + + C CH ++ T GP C +C
Sbjct: 76 KFLMTAFHSKSPMSCQGCHKEMKTAKKTTGPTACAQC 112
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 30.0 bits (67), Expect = 0.94
Identities = 30/129 (23%), Positives = 42/129 (32%), Gaps = 20/129 (15%)
Query: 101 DCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILC 160
C+ ++C G G + G C C+ Y G+ C EC T S + E +
Sbjct: 87 RCRDQSRDRSLCHGKGFLE-------CGICRCDTGYIGKNC-ECQTQGRSSQELEGSCRK 138
Query: 161 SKCHASCESG--CSTGGPKGCTKCKSGWAADKDIG-----CYDIN-ECSDENICSGNQFC 212
C C G C + K I C IN E + +C G
Sbjct: 139 DNNSIICSGLGDCVCGQ----CLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRG 194
Query: 213 VNTEGSYRC 221
+ G RC
Sbjct: 195 LCFCGKCRC 203
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 29.9 bits (66), Expect = 1.0
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 91 RCCPVDHYGADCKPCLGFPNVCFGNGKCKGNG------TRKGNGQCVCNKEYTGELCNEC 144
+ + G+CK N R+G+ QC C TG C +C
Sbjct: 243 ALGGTYVQRENLYKYFYAISNIEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGKC 302
Query: 145 NTGYFQ 150
+
Sbjct: 303 KKNFRT 308
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 29.1 bits (64), Expect = 1.5
Identities = 15/153 (9%), Positives = 31/153 (20%), Gaps = 24/153 (15%)
Query: 81 YTWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGEL 140
+TW + + + + P V + C G
Sbjct: 58 FTWQAAGQAEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVA 117
Query: 141 CNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINEC 200
E + S G ++ C
Sbjct: 118 AFEVD---------------------VIVMNSEGNT-ILXTPQNAIFFKTCQQAECPGGC 155
Query: 201 SDENICSGNQFCVNTEGSYRCMQCD-PSCNGCH 232
+ C+ + C +G + C+ + H
Sbjct: 156 RNGGFCNERRICECPDG-FHGPHCEGTKHHHHH 187
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 28.4 bits (64), Expect = 1.6
Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 8/44 (18%)
Query: 196 DINECSDENICSGNQFCVNTEGSYRC--------MQCDPSCNGC 231
+ + +QFC + S C +C
Sbjct: 79 FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPT 122
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 29.6 bits (66), Expect = 1.7
Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 15/135 (11%)
Query: 93 CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCV----CNKEYTGELCNECNT-G 147
CP D + + PC C+ NGKC QC+ + + + C N
Sbjct: 295 CPTDVFQRNGLPCQNNQGYCY-NGKC-----PIMTNQCIALRGPGVKVSRDSCFTLNQRT 348
Query: 148 YFQSY---KDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDEN 204
+ + I C+ C C +C D
Sbjct: 349 RGCGLCRMEYGRKIPCAAKDVKCGRLFCKRRNSMICNCSISPRDPNYGMVEPGTKCGDGM 408
Query: 205 ICSGNQFCVNTEGSY 219
+CS N+ CV+ + +Y
Sbjct: 409 VCS-NRQCVDVKTAY 422
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 28.5 bits (64), Expect = 1.8
Identities = 30/147 (20%), Positives = 40/147 (27%), Gaps = 25/147 (17%)
Query: 104 PCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCS-- 161
C P C G C G G+ C C +T C+ + C+
Sbjct: 2 ICDPNP--CENGGICL-PGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPN 58
Query: 162 ------KCHASCESGCSTGGPKGCTKCKSGWAADKDIGC-YDINECSDENICSGNQFCVN 214
C S T C C G+ C ++INEC C C +
Sbjct: 59 PCHNGGTCEISEAYRGDTFIGYVCK-CPRGFNGIH---CQHNINECEV-EPCKNGGICTD 113
Query: 215 TEGSYRCM--------QCDPSCNGCHG 233
+Y C C G H
Sbjct: 114 LVANYSCECPGEFMGRNCQYKGGGHHH 140
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 29.1 bits (64), Expect = 1.8
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 101 DCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILC 160
C+ ++C G G + G C C+ Y G+ C EC T S + E +
Sbjct: 187 RCRDQSRDRSLCHGKGFLE-------CGICRCDTGYIGKNC-ECQTQGRSSQELEGSCRK 238
Query: 161 SKCHASC 167
C
Sbjct: 239 DNNSIIC 245
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 29.2 bits (65), Expect = 1.9
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 85 CINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNE 143
C K CC G C+ P C+ G +C+C K Y G C +
Sbjct: 404 CTPTGKCCCSPGWEGDFCRTAKCEPA-------CRHGGVCVRPNKCLCKKGYLGPQCEQ 455
Score = 29.2 bits (65), Expect = 2.0
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 18/67 (26%)
Query: 120 GNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGC 179
NG G+C C+ + G+ C KC +C G P C
Sbjct: 400 RNGYCTPTGKCCCSPGWEGDFCRTA-----------------KCEPACRHGGVCVRPNKC 442
Query: 180 TKCKSGW 186
CK G+
Sbjct: 443 L-CKKGY 448
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 29.4 bits (66), Expect = 1.9
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 2/108 (1%)
Query: 141 CNECNTGYFQSYKD--EKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDIN 198
F Y + +K I K ++ + K A KD+ +
Sbjct: 871 LMGKKLPNFGPYLEQRKKIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQ 930
Query: 199 ECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGY 246
S + V C+ C C+ G + E +
Sbjct: 931 YLGTFGELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETH 978
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth
factor, NGF, neurotrophin, common neurotrophin receptor;
2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1
g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Length = 161
Score = 28.6 bits (63), Expect = 2.0
Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 4/116 (3%)
Query: 135 EYTGELCNECNTGYFQSYK-DEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIG 193
++GE C CN G + +C C + + C C
Sbjct: 10 THSGECCKACNLGEGVAQPCGANQTVCEPCLDNVTFSDVVSATEPCKPCTECLGLQSMSA 69
Query: 194 CYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCN---GCHGDGPDMCEACAEGY 246
+ + G T C C+ C +CE C EG
Sbjct: 70 PCVEADDAVCRCAYGYYQDEETGHCEACSVCEVGSGLVFSCQDKQNTVCEECPEGT 125
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 29.4 bits (66), Expect = 2.1
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 141 CNE-CNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSG-WAADKDIGCYDIN 198
C++ C ++ + + C C CE C C G W GCY++
Sbjct: 485 CSDPCAPNEMKNMQ-PGDVCCWIC-IPCEPYEYLVDEFTCMDCGPGQWPTADLSGCYNLP 542
Query: 199 E 199
E
Sbjct: 543 E 543
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 28.9 bits (64), Expect = 2.2
Identities = 16/132 (12%), Positives = 29/132 (21%), Gaps = 20/132 (15%)
Query: 102 CKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEK----- 156
C VC GT G G+ + + + +
Sbjct: 258 CAVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGKCVDKTKKKYYSTSSHGNWGSWGSWGQ 317
Query: 157 -TILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNT 215
+ C C+ P+ + +G + + CS C
Sbjct: 318 CSRSCGGGVQFAYRHCNNPAPRNNGRYCTG-------------KRAIYRSCS-LMPCPPN 363
Query: 216 EGSYRCMQCDPS 227
S+ P
Sbjct: 364 GKSFGSAWSHPQ 375
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 29.0 bits (64), Expect = 2.3
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 90 KRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNE 143
RC PV + +C GNG C +CVCN+ + G CN
Sbjct: 434 HRCLPVASFNFSTCLSSKEGTICSGNGVCSNEL------KCVCNRHWIGSDCNT 481
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism, structural
genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 26.5 bits (58), Expect = 2.6
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 196 DINECSD-ENICSGNQFCVNTEGSYRCM-QCDPSCNGCHGDGP-------DMCEACAEGY 246
D+NEC C G C+N G Y C+ + N HG+GP C GY
Sbjct: 2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGPPPPVPPAQHPNPCPPGY 61
Query: 247 KLQ-QNICIN 255
+ Q+ C++
Sbjct: 62 EPDDQDSCVD 71
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 28.7 bits (64), Expect = 2.7
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 85 CINKLKRCCPVDHYGADC--KPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCN 142
CI K K C + G C C C +G C C C + + G CN
Sbjct: 257 CIGKSKCKCSKGYQGDLCSKPVC---EPGCGAHGTCHEPNK------CQCQEGWHGRHCN 307
Query: 143 E 143
+
Sbjct: 308 K 308
Score = 27.9 bits (62), Expect = 5.3
Identities = 27/144 (18%), Positives = 35/144 (24%), Gaps = 43/144 (29%)
Query: 87 NKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNT 146
N + + + C+ P C G C C C + G C +
Sbjct: 131 NTILKTPQNAIFFKTCQQAEC-PGGCRNGGFCNERRI------CECPDGFHGPHCEKA-- 181
Query: 147 GYFQSYKDEKTILCSKCHASCESGCSTGG----PKGCTKCKSGWAADKDIGCYDINECSD 202
C C GG P C C G+ C D CS
Sbjct: 182 -------------------LCTPRCMNGGLCVTPGFCI-CPPGFYGVN---C-DKANCS- 216
Query: 203 ENICSGNQFCVNTEGSYRCMQCDP 226
C C +C C P
Sbjct: 217 -TTCFNGGTCFYP---GKC-ICPP 235
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 28.8 bits (63), Expect = 2.8
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 16/86 (18%)
Query: 156 KTILCSKCHASCESGCSTGGPKG----CTKCKSGWAADKDIGCYDINECS--------DE 203
+ +C+ C G C+ C SG + + +C+ D
Sbjct: 69 EGGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDS 124
Query: 204 NICSGNQFCVNTEGSYRCMQCDPSCN 229
+ G V+ ++ C C PS
Sbjct: 125 LVGPGTSGKVHAMSNWVCYLCLPSSR 150
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 28.3 bits (62), Expect = 3.5
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 118 CKGNGTRKGNGQCVCNKEYTGELC 141
GNGT + G C C + G C
Sbjct: 449 NNGNGTFEC-GVCRCGPGWLGSQC 471
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 27.2 bits (61), Expect = 4.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 194 CYDINECSDE-NICSGNQFCVNTEGSYRCMQCDP 226
D++ECS N C C+NT GS+ C QC
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFEC-QCLQ 34
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 28.3 bits (63), Expect = 4.0
Identities = 13/106 (12%), Positives = 21/106 (19%), Gaps = 17/106 (16%)
Query: 141 CNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINEC 200
N C +S I SK +G C+ Y +
Sbjct: 252 RNLCLLKTSESGLPSTRIKKSKA--------LSGFS--LQSCRHSIPVFCHSSFYHDTDF 301
Query: 201 SDENICSGNQFCVNT-----EGSYRCMQCDPSCN--GCHGDGPDMC 239
E + + RC + C+
Sbjct: 302 LGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCY 347
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 25.8 bits (57), Expect = 4.1
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 22/55 (40%)
Query: 198 NECSDEN-ICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQN 251
CS +N C QFC + S C +CA GY L N
Sbjct: 2 KLCSLDNGDCD--QFCHEEQNSVVC-------------------SCARGYTLADN 35
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 27.3 bits (60), Expect = 4.5
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Query: 133 NKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDI 192
+ + C +C+ G + + C CESG T C S K++
Sbjct: 12 HPQNNSICCTKCHKGTYLYNDCPGPGQDTDC-RECESGSFTASENHLRHCLSCSKCRKEM 70
Query: 193 GCYDINECSDEN----ICSGNQFCVNTEGSYRCMQCDP--SCNGCHGDGP-----DMCEA 241
G +I+ C+ + C NQ+ + QC C +
Sbjct: 71 GQVEISSCTVDRDTVCGCRKNQYRHYWSEN--LFQCFNCSLCLNGTVHLSCQEKQNTVCT 128
Query: 242 CAEGYKLQQNICINTQ 257
C G+ L++N C++
Sbjct: 129 CHAGFFLRENECVSCS 144
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 27.4 bits (61), Expect = 4.8
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDP 226
+ + +QFC + S C C
Sbjct: 79 FTRKLCSLDNGDCDQFCHEEQNSVVC-SCAR 108
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 27.7 bits (60), Expect = 4.8
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 6/87 (6%)
Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICIN 255
+ + + + IC N V + C C+ G + CE E
Sbjct: 3 EASAVTVDTICX-NGQLVQMSNHFXC-MCNE---GLVHLSENTCEEXNECXXETLGXACG 57
Query: 256 TQAKSQNTNENLYRYGVYVGLCVATYI 282
+ + + +Y C+ Y
Sbjct: 58 EFGQCIENPDP-AQVNMYXCGCIEGYT 83
Score = 26.9 bits (58), Expect = 7.8
Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 12/104 (11%)
Query: 126 GNGQCVCNKEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSG 185
C C + YT D C + C G
Sbjct: 72 NMYXCGCIEGYTLXEDTCVL--------DVCQYXNCGESGECIVEYLSEIQSAGCSCAIG 123
Query: 186 WAADKDIG--CYDINECSDENICSG-NQFCVNTEGSYRCMQCDP 226
+ + C E + + C+ N+ C N EG Y C QC
Sbjct: 124 XVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXC-QCME 166
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 27.6 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 155 EKTILCSKCHASCESGCSTGGPKGCTKCK 183
K ILC +C G G K CT C
Sbjct: 36 NKQILCKECEG---RGGKKGAVKKCTSCN 61
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 28.0 bits (62), Expect = 5.0
Identities = 16/72 (22%), Positives = 18/72 (25%), Gaps = 11/72 (15%)
Query: 185 GWAADKDIGCYDINECSD--ENICSGNQFCVNTEGSYRCMQCDPSC--NGCH------GD 234
G C D + C + CV R C NG D
Sbjct: 6 GVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGRDTDLD 65
Query: 235 G-PDMCEACAEG 245
G PD C E
Sbjct: 66 GFPDEKLRCPER 77
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 27.9 bits (62), Expect = 5.1
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 141 CNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTK 181
C C + + + C+ C + CS P C
Sbjct: 223 CEYCANFMWG--LIAQGVKCADCGLNVHKQCSKMVPNDCKP 261
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 28.1 bits (60), Expect = 5.5
Identities = 15/151 (9%), Positives = 34/151 (22%), Gaps = 4/151 (2%)
Query: 92 CCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQS 151
G + N G + + + ++
Sbjct: 514 VSLTAFNGTEYTMGPRPSNGTLGRSENRISVNLAKVETNANLTAVPNGSKVTYTLTGIKA 573
Query: 152 YKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQF 211
++ + + + + D I C + E I N+
Sbjct: 574 VIGTSSVPYKQIVSIGKGFMDGKLLICANSAELDPTMDAAIDCSNTEAPIYEVIVGSNKA 633
Query: 212 CVNTEGSY----RCMQCDPSCNGCHGDGPDM 238
+ + S + + C CHG+ D
Sbjct: 634 SFSADASNVTARSIVISEAKCANCHGEKADF 664
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 25.0 bits (55), Expect = 6.2
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 19/42 (45%)
Query: 210 QFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQN 251
QFC RC +CA GY L +
Sbjct: 10 QFCREERSEVRC-------------------SCAHGYVLGDD 32
>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR,
immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB:
3b2u_A* 3c09_A*
Length = 214
Score = 27.1 bits (59), Expect = 7.3
Identities = 11/50 (22%), Positives = 13/50 (26%), Gaps = 9/50 (18%)
Query: 194 CYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACA 243
I EN C + S GC G P C +C
Sbjct: 154 KTKIISNRGENSCKATGQVCHAL---------CSPEGCWGPEPRDCVSCR 194
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 27.2 bits (59), Expect = 7.6
Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 5/103 (4%)
Query: 141 CNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINE- 199
C+ C G F +++ C C C P + G + N
Sbjct: 47 CSSCPVGTFTRHENGIEK-CHDCSQPCPWPMIEKLPCAALTDRECTCPP---GMFQSNAT 102
Query: 200 CSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEAC 242
C+ +C ++C G D P C
Sbjct: 103 CAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKC 145
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 27.0 bits (60), Expect = 8.5
Identities = 13/48 (27%), Positives = 16/48 (33%)
Query: 198 NECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEG 245
NEC E FC+ + SY C G + CA G
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG 50
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 27.2 bits (61), Expect = 9.4
Identities = 2/52 (3%), Positives = 10/52 (19%)
Query: 134 KEYTGELCNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSG 185
+L ++ + ++ ++ K
Sbjct: 596 VGTLYQLIDQAKRTPVRQFRGIVAPGSGGSADKKKAAPRKRSAKKSPPADEV 647
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 26.9 bits (59), Expect = 9.7
Identities = 29/137 (21%), Positives = 45/137 (32%), Gaps = 22/137 (16%)
Query: 93 CPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVC----NKEYTGELCNECNT-- 146
CP D + PC + C+ NG C QC+ + + + C N
Sbjct: 273 CPTDSLQRNGHPCQNNQSYCY-NGTC-----PTLTNQCITLLGPHFTVSPKGCFNLNMRG 326
Query: 147 --GYFQSYKDEKTILCSKCHASCES-GCSTGGPKGCTKCKSGWAADKDIGCY-DINECSD 202
G F +D I C+ C C+ C + D +C D
Sbjct: 327 DDGSFCRMEDGTKIPCAAKDVKCGRLYCTEKNTMSCLI-----PPNPDGIMAEPGTKCGD 381
Query: 203 ENICSGNQFCVNTEGSY 219
+CS CV+ + +Y
Sbjct: 382 GMVCS-KGQCVDVQTAY 397
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 27.1 bits (59), Expect = 10.0
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 193 GCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNG--CHGDGPDMCEACAEGY 246
GC + E+ CS C+ + C S +G C+ G + G
Sbjct: 1012 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQ 1067
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.450
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,036,972
Number of extensions: 303179
Number of successful extensions: 1901
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1267
Number of HSP's successfully gapped: 420
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)