RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy826
         (329 letters)



>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 44

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDGPDM 238
           DI+EC       G   CVNT G + C +CD    G       M
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFEC-KCDE---GYESGFMMM 40


>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 42

 Score = 35.2 bits (81), Expect = 4e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDP 226
           DI+EC  + +      C NTEGSYRC +C P
Sbjct: 1   DIDECQRDPLLCRGGVCHNTEGSYRC-ECPP 30


>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 194 CYDINECSDENICSGNQFCVNTEGSYRC 221
             D++EC + ++C  +  C+NT+GSYRC
Sbjct: 2   AVDMDECKEPDVCK-HGQCINTDGSYRC 28


>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 196 DINECSDENICSGNQFCVNTEGSYRC 221
           DI+EC +         C+NT GS++C
Sbjct: 2   DIDECQELPGLCQGGKCINTFGSFQC 27


>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
           domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 40

 Score = 34.7 bits (80), Expect = 7e-04
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDP 226
           DI+EC +   CS    C N  G++ C  C P
Sbjct: 1   DIDECENGGFCS--GVCHNLPGTFEC-ICGP 28


>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 196 DINECSDENICSGNQFCVNTEGSYRCM 222
           D+NEC D   C  +  CVNT GSY C 
Sbjct: 2   DVNECLDPTTCI-SGNCVNTPGSYICD 27


>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
           different EGF domains {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 41

 Score = 32.0 bits (73), Expect = 0.005
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)

Query: 197 INECSDENICSGNQFCVNTEGSYRC 221
           I+EC D + CS  Q CVN EG Y+C
Sbjct: 1   IDECQDPDTCS--QLCVNLEGGYKC 23


>d1nqla4 g.3.9.1 (A:481-614) EGF receptor Cys-rich domains {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 33.4 bits (75), Expect = 0.011
 Identities = 20/108 (18%), Positives = 30/108 (27%), Gaps = 7/108 (6%)

Query: 80  LYTWLCINKLKRCCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGE 139
                C++K K          +   C+     C           R  +    C     G 
Sbjct: 26  SRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGP 85

Query: 140 LC-NECNTGYF------QSYKDEKTILCSKCHASCESGCSTGGPKGCT 180
            C   C  G             +   +C  CH +C  GC+  G +GC 
Sbjct: 86  HCVKTCPAGVMGENNTLVWKYADAGHVCHLCHPNCTYGCTGPGLEGCP 133



 Score = 30.7 bits (68), Expect = 0.10
 Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 4/118 (3%)

Query: 126 GNGQCV-CNKEYTGELCNE-CNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCK 183
               CV C     G  C + C     +  +  +   C +CH  C          G     
Sbjct: 15  EPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDN 74

Query: 184 SGWAADKDIGCYDINECSDENICSGN-QFCVNTEGSYRCMQCDPSC-NGCHGDGPDMC 239
               A    G + +  C    +   N       +  + C  C P+C  GC G G + C
Sbjct: 75  CIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYADAGHVCHLCHPNCTYGCTGPGLEGC 132



 Score = 28.4 bits (62), Expect = 0.56
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 15/99 (15%)

Query: 163 CHASCES-GCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC 221
           CHA C   GC    P+ C  C++     + +    + E         ++          C
Sbjct: 2   CHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSE----------C 51

Query: 222 MQCDPSCNGCHG----DGPDMCEACAEGYKLQQNICINT 256
           +QC P C          G          + +    C+ T
Sbjct: 52  IQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKT 90


>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 53

 Score = 31.1 bits (70), Expect = 0.018
 Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 7/33 (21%)

Query: 196 DINECSDEN-------ICSGNQFCVNTEGSYRC 221
           D++EC+  +              C N  G Y C
Sbjct: 3   DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFC 35


>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 42

 Score = 30.2 bits (68), Expect = 0.029
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 198 NECSDENICSGNQFCVNTEGSYRCM 222
           NEC+D      + FC N  G Y C 
Sbjct: 1   NECTDFVDVPCSHFCNNFIGGYFCS 25


>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular
           domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 120

 Score = 31.4 bits (70), Expect = 0.054
 Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 19/118 (16%)

Query: 163 CHASC-ESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC 221
           C++ C    C   GP  C  C       + +    + +       S            RC
Sbjct: 2   CNSLCAHGHCWGPGPTQCVNCSHFLRGQECVEECRVWKGLPREYVSDK----------RC 51

Query: 222 MQCDPSC------NGCHGDGPDMCEACAEGYKLQQNICINTQAKSQNTNENLYRYGVY 273
           + C P C        C G   D C ACA  +    + C+         + +      Y
Sbjct: 52  LPCHPECQPQNSSETCFGSEADQCAACA--HYKDSSSCVARCPSGVKPDLSYMPIWKY 107


>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
           serine protease 2, MASP2 {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 45

 Score = 29.1 bits (65), Expect = 0.081
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)

Query: 197 INECSDEN--ICSGNQFCVNTEGSYRCM 222
           ++EC          + +C N  G Y C 
Sbjct: 1   VDECRTSLGDSVPCDHYCHNYLGGYYCS 28


>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
           1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 42

 Score = 28.5 bits (64), Expect = 0.091
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 196 DINECSDE-NICSGNQFCVNTEGSYRCMQCDPSCNG 230
           D++ECS   N C     C+NT GS+ C QC     G
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFEC-QCLQGYTG 36



 Score = 23.2 bits (50), Expect = 8.3
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 101 DCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELC 141
           D   C    N C   GKC       G+ +C C + YTG  C
Sbjct: 2   DVDECSLGANPCEHAGKCINTL---GSFECQCLQGYTGPRC 39


>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
           serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 45

 Score = 28.7 bits (64), Expect = 0.098
 Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)

Query: 197 INECSDENICSG--NQFCVNTEGSYRC 221
           I+EC      +   +  C N  G + C
Sbjct: 1   IDECQVAPGEAPTCDHHCHNHLGGFYC 27


>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase Erbb-3
           Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 30.1 bits (67), Expect = 0.11
 Identities = 23/101 (22%), Positives = 31/101 (30%), Gaps = 19/101 (18%)

Query: 163 CHASCES-GCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC 221
           C   C S GC   GP  C  C++          Y        +    N           C
Sbjct: 2   CDPLCSSGGCWGPGPGQCLSCRN----------YSRGGVCVTHCNFLNGEPREFAHEAEC 51

Query: 222 MQCDPSC------NGCHGDGPDMCEACAEGYKLQQNICINT 256
             C P C        C+G G D C  CA  +      C+++
Sbjct: 52  FSCHPECQPMEGTATCNGSGSDTCAQCA--HFRDGPHCVSS 90


>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 51

 Score = 26.8 bits (59), Expect = 0.54
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 127 NGQCVCNKEYTGELCNECNTGYF 149
            GQC C    +G  C  C+ GY+
Sbjct: 19  TGQCQCLPHVSGRDCGTCDPGYY 41


>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
           receptor, different EGF domains {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 40

 Score = 25.9 bits (57), Expect = 1.0
 Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 198 NECSDENICSGNQFCVNTEGSYRC 221
           NEC D N    +  C + +  Y C
Sbjct: 3   NECLDNN-GGCSHVCNDLKIGYEC 25


>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 37

 Score = 25.4 bits (56), Expect = 1.1
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCH 232
           D ++C+  + C     C +   SY C  C P+  G +
Sbjct: 1   DGDQCAS-SPCQNGGSCKDQLQSYIC-FCLPAFEGRN 35


>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 155

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 19/122 (15%), Positives = 26/122 (21%), Gaps = 6/122 (4%)

Query: 141 CNECNTGYFQSYKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINEC 200
              C          E+    S C   C + C + G      C             D  +C
Sbjct: 10  KTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKC 69

Query: 201 SDENICSGNQFCVNT------EGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQNICI 254
                   +  CV T                  C   H    +        Y +  N CI
Sbjct: 70  VACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCI 129

Query: 255 NT 256
             
Sbjct: 130 PE 131


>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 25.2 bits (55), Expect = 1.4
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 201 SDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGDG 235
           ++ + CS +  C +    + C +C        G+G
Sbjct: 4   NNRHQCSVHAECRDYATGFCC-RCVA---NYTGNG 34


>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 53

 Score = 25.2 bits (55), Expect = 1.9
 Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 3/41 (7%)

Query: 101 DCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELC 141
            C     +   C   G C    +      C C   Y+G+ C
Sbjct: 5   GCPSS--YDGYCLNGGVCMHIESLDSY-TCNCVIGYSGDRC 42


>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 39

 Score = 25.0 bits (55), Expect = 2.0
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 196 DINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCH 232
           D ++C   N C     C +   SY C  C     G +
Sbjct: 2   DGDQCES-NPCLNGGSCKDDINSYEC-WCPFGFEGKN 36


>d1s78a4 g.3.9.1 (A:489-564) Protooncoprotein Her2 extracellular
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 25.9 bits (56), Expect = 2.1
 Identities = 20/86 (23%), Positives = 23/86 (26%), Gaps = 17/86 (19%)

Query: 163 CHASCES-GCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRC 221
           CH  C    C   GP  C  C                EC +E              +  C
Sbjct: 1   CHQLCARGHCWGPGPTQCVNCSQFLRG---------QECVEEC-RVLQGLPREYVNARHC 50

Query: 222 MQCDPSC------NGCHGDGPDMCEA 241
           + C P C        C G   D C A
Sbjct: 51  LPCHPECQPQNGSVTCFGPEADQCVA 76


>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 95

 Score = 26.0 bits (56), Expect = 2.8
 Identities = 5/65 (7%), Positives = 19/65 (29%)

Query: 19 WEEEKQKIYAKSEVRLIEIQEKMCSEVSGFLDQCHNFAADIESEIEEWWFKVQHSKAKDS 78
             E    + ++   L  I   +  +    L    +      +    +   +++   + +
Sbjct: 28 GFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVN 87

Query: 79 DLYTW 83
            + W
Sbjct: 88 QTFNW 92


>d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio
           desulfuricans, ATCC 27774 [TaxId: 876]}
          Length = 293

 Score = 27.2 bits (58), Expect = 3.3
 Identities = 20/160 (12%), Positives = 29/160 (18%), Gaps = 9/160 (5%)

Query: 92  CCPVDHYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQS 151
           C  +     D   C    N+       +      G      N+    E      T    S
Sbjct: 114 CHAIVTPKRDEAWCATCHNITPSMTPEQMQKGINGTLLPGDNEALAAETVLAQKTVEPVS 173

Query: 152 YKDEKTILCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQF 211
                  +     A      +    +  T        DK    +          C     
Sbjct: 174 PMLAPYKVVIDALADKYEPSNFTHRRHLTSLMERIKDDKLAQAFHNKPEILCATCHHRSP 233

Query: 212 CVNTEGSYRCMQCDPSCNGCHGDGPDMCEACAEGYKLQQN 251
              T          P C  CH    D             +
Sbjct: 234 LSLTP---------PKCGSCHTKEIDKANPGRPNLMAAYH 264



 Score = 25.6 bits (54), Expect = 8.8
 Identities = 16/151 (10%), Positives = 29/151 (19%), Gaps = 12/151 (7%)

Query: 97  HYGADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTGYFQSYKDEK 156
             G +     G                   +      K     L ++     F   +   
Sbjct: 143 QKGINGTLLPGDNEALAAETVLAQKTVEPVSPMLAPYKVVIDALADKYEPSNFTHRRHLT 202

Query: 157 TILCSKCHASCESGCSTGGPKGCTKCKSGW-AADKDIGCYDINECSDENICSGNQFCVNT 215
           +++                   C  C      +     C   +    +    G    +  
Sbjct: 203 SLMERIKDDKLAQAFHNKPEILCATCHHRSPLSLTPPKCGSCHTKEIDKANPGRPNLMAA 262

Query: 216 EGSYRCMQCDPS----------CNGCHGDGP 236
               +CM C             C  CH   P
Sbjct: 263 YHL-QCMGCHKGMDVARPRDTDCTTCHKAAP 292


>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
           1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 23.5 bits (51), Expect = 5.7
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 197 INECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCH 232
           +NEC   N C  +  C++  G ++C  C P   G H
Sbjct: 1   VNECVS-NPCQNDATCLDQIGEFQC-ICMPGYEGVH 34


>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase
           (aspartylglucosaminidase, AGA) {Flavobacterium
           meningosepticum [TaxId: 238]}
          Length = 275

 Score = 26.1 bits (57), Expect = 5.9
 Identities = 9/66 (13%), Positives = 21/66 (31%)

Query: 159 LCSKCHASCESGCSTGGPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGS 218
           +      +    C+T G       + G +     G +  NE          +  + T G+
Sbjct: 141 IALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTVGT 200

Query: 219 YRCMQC 224
           +  ++ 
Sbjct: 201 HLVVEL 206


>d2cy3a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans,
           different strains [TaxId: 876]}
          Length = 118

 Score = 25.2 bits (54), Expect = 5.9
 Identities = 11/77 (14%), Positives = 17/77 (22%), Gaps = 9/77 (11%)

Query: 97  HYGADCKPCLGFPN---------VCFGNGKCKGNGTRKGNGQCVCNKEYTGELCNECNTG 147
           H   +C  C                 G         +         +      C +C+  
Sbjct: 39  HATVECVQCHHTLEADGGAVKKCTTSGCHDSLEFRDKANAKDIKLVENAFHTQCIDCHKA 98

Query: 148 YFQSYKDEKTILCSKCH 164
             +  K      C KCH
Sbjct: 99  LKKDKKPTGPTACGKCH 115


>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 194

 Score = 25.7 bits (56), Expect = 6.1
 Identities = 13/108 (12%), Positives = 26/108 (24%), Gaps = 13/108 (12%)

Query: 177 KGCTKCKSGWAADKDIGCYDIN--ECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGD 234
                   G+         D    E  DE +   +    +    +          G   +
Sbjct: 44  TAMQFFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPN 103

Query: 235 G--------PDMCEACAEGYKLQQNICINTQAKSQNTNENLYRYGVYV 274
                      + E  +   ++Q+ +       +    E L   GV V
Sbjct: 104 KQVLGLSKLARIVEIYSRRLQVQERLTKQI---AVAITEALQPAGVGV 148


>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 48

 Score = 23.7 bits (51), Expect = 6.2
 Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 3/42 (7%)

Query: 100 ADCKPCLGFPNVCFGNGKCKGNGTRKGNGQCVCNKEYTGELC 141
           ++C         C  +G C           C C   Y GE C
Sbjct: 2   SECPLS--HDGYCLHDGVCM-YIEALDKYACNCVVGYIGERC 40


>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
           {Thermotoga maritima [TaxId: 2336]}
          Length = 238

 Score = 25.3 bits (54), Expect = 9.3
 Identities = 11/92 (11%), Positives = 26/92 (28%)

Query: 175 GPKGCTKCKSGWAADKDIGCYDINECSDENICSGNQFCVNTEGSYRCMQCDPSCNGCHGD 234
           GP G  K         ++            +  G+   + T      +      +  +  
Sbjct: 42  GPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKA 101

Query: 235 GPDMCEACAEGYKLQQNICINTQAKSQNTNEN 266
             ++  +  E +++   I     AKS   +  
Sbjct: 102 VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.450 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,317,505
Number of extensions: 69688
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 156
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)