BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8265
(630 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41738|AHR_RAT Aryl hydrocarbon receptor OS=Rattus norvegicus GN=Ahr PE=1 SV=2
Length = 853
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 114/164 (69%), Gaps = 6/164 (3%)
Query: 233 LDIRGRIKILHGQNRK-----LEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
++ +GR+K LHGQN+K L P LALFAI TP PPS+LEI K +F++KHKLD +
Sbjct: 235 MNFQGRLKYLHGQNKKGKDGALLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFT 294
Query: 288 LVSMDQRGKMLLGYSDTELANMG-GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
+ D +G+++LGY++ EL N G GY +H D+ + A +H ++KTG SGM +R
Sbjct: 295 PIGCDAKGQLILGYTEVELCNKGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAK 354
Query: 347 DGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRTM 390
W+W+Q+++RL+Y+N +PD++I+T RPL +EEGR+ L KR+M
Sbjct: 355 HSRWRWVQSNARLIYRNGRPDYIIATQRPLTDEEGREHLQKRSM 398
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 574 ESDIVHQSVYELVHSEDREELQRQLMW 600
+SD++HQSVYEL+H+EDR E QRQL W
Sbjct: 148 QSDVIHQSVYELIHTEDRAEFQRQLHW 174
>sp|O02747|AHR_RABIT Aryl hydrocarbon receptor OS=Oryctolagus cuniculus GN=AHR PE=2 SV=1
Length = 847
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 123/208 (59%), Gaps = 8/208 (3%)
Query: 233 LDIRGRIKILHGQNRK-----LEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
++ +GR+K LHGQN+K L P LALFAI TP PPS+LEI K +F++KHKLD +
Sbjct: 235 MNFQGRLKFLHGQNKKGKDGSLLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFT 294
Query: 288 LVSMDQRGKMLLGYSDTELANMG-GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
D +G+++LGY++ EL G GY +H D+ Y A +H ++KTG SG+ +R T
Sbjct: 295 PTGCDAKGQIVLGYTEAELCMRGSGYQFIHAADMLYCAESHIRMIKTGESGLAVFRLLTK 354
Query: 347 DGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRTMDFKVSYLDAGLNNSYF 406
D W W+Q+++R +YKN +PDF+I+T RPL +EEGR+ L KR K+ ++ +
Sbjct: 355 DNRWAWVQSNARFIYKNGRPDFIIATQRPLTDEEGREHLLKRNT--KLPFMFTTGEAVLY 412
Query: 407 SDSDQLTPSHQTLAPSPGSAQSGSSSTT 434
+ P L P S G S T
Sbjct: 413 EMTSPFPPIMDPLPIRPKSGTCGKDSAT 440
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 574 ESDIVHQSVYELVHSEDREELQRQLMW 600
+SD++HQSVYEL+H+EDR E QRQL W
Sbjct: 149 QSDVIHQSVYELIHTEDRAEFQRQLHW 175
>sp|Q8R4S4|AHR_MUSSI Aryl hydrocarbon receptor OS=Mus spicilegus GN=Ahr PE=2 SV=1
Length = 854
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 113/164 (68%), Gaps = 6/164 (3%)
Query: 233 LDIRGRIKILHGQNRK-----LEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
++ +GR+K LHGQN+K L P LALFAI TP PPS+LEI K +F++KHKLD +
Sbjct: 235 MNFQGRLKYLHGQNKKGKDGALLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFT 294
Query: 288 LVSMDQRGKMLLGYSDTELANMG-GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
+ D +G+++LGY++ EL G GY +H D+ + A +H ++KTG SGM +R
Sbjct: 295 PIGCDAKGQLILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAK 354
Query: 347 DGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRTM 390
W+W+Q+++RL+Y+N +PD++I+T RPL +EEGR+ L KR+M
Sbjct: 355 HSRWRWVQSNARLIYRNGRPDYIIATQRPLTDEEGREHLQKRSM 398
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Query: 574 ESDIVHQSVYELVHSEDREELQRQLMW---------------NSFLPPESAGISLQECFL 618
+SD++HQSVYEL+H+EDR E QRQL W + PP++A +
Sbjct: 148 QSDVIHQSVYELIHTEDRAEFQRQLHWALNPSQCTDSAQGVDEAHGPPQAAVYYTPDQLP 207
Query: 619 QENSYLLERSF 629
EN+ +ER F
Sbjct: 208 PENASFMERCF 218
>sp|Q8R4S2|AHR_MUSSP Aryl hydrocarbon receptor OS=Mus spretus GN=Ahr PE=2 SV=1
Length = 854
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 113/164 (68%), Gaps = 6/164 (3%)
Query: 233 LDIRGRIKILHGQNRK-----LEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
++ +GR+K LHGQN+K L P LALFAI TP PPS+LEI K +F++KHKLD +
Sbjct: 235 MNFQGRLKYLHGQNKKGKDGALLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFT 294
Query: 288 LVSMDQRGKMLLGYSDTELANMG-GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
+ D +G+++LGY++ EL G GY +H D+ + A +H ++KTG SGM +R
Sbjct: 295 PIGCDAKGQLILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAK 354
Query: 347 DGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRTM 390
W+W+Q+++RL+Y+N +PD++I+T RPL +EEGR+ L KR+M
Sbjct: 355 HSRWRWVQSNARLIYRNGRPDYIIATQRPLTDEEGREHLQKRSM 398
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Query: 574 ESDIVHQSVYELVHSEDREELQRQLMW---------------NSFLPPESAGISLQECFL 618
+SD++HQSVYEL+H+EDR E QRQL W + PP++A +
Sbjct: 148 QSDVIHQSVYELIHTEDRAEFQRQLHWALNPSQCTDSAQGVDEAHGPPQAAVYYTPDQLP 207
Query: 619 QENSYLLERSF 629
EN+ +ER F
Sbjct: 208 PENASFMERCF 218
>sp|Q95LD9|AHR_DELLE Aryl hydrocarbon receptor OS=Delphinapterus leucas GN=AHR PE=2 SV=1
Length = 845
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 112/164 (68%), Gaps = 6/164 (3%)
Query: 233 LDIRGRIKILHGQNRKLEE-----PPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
++ +GR+K LHGQN+K ++ P LALFAI TP PPS+LEI K +F++KHKLD +
Sbjct: 236 MNFQGRLKYLHGQNKKGKDGSILPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFT 295
Query: 288 LVSMDQRGKMLLGYSDTELANMG-GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
D +G+++LGY++ EL G GY +H D+ Y A H ++KTG SG+I +R T
Sbjct: 296 PTGCDAKGRIVLGYTEAELCMRGSGYQFIHAADMLYCAEYHIRMIKTGESGLIVFRLLTK 355
Query: 347 DGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRTM 390
D W W+Q+++RLVYKN +PD++I+T RPL +EEG + L KR +
Sbjct: 356 DNRWTWVQSNARLVYKNGRPDYIIATQRPLTDEEGTEHLRKRNL 399
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 574 ESDIVHQSVYELVHSEDREELQRQLMW 600
+SD++HQSVYEL+H+EDR E QRQL W
Sbjct: 149 QSDVIHQSVYELIHTEDRAEFQRQLHW 175
>sp|Q8R4S7|AHR_MUSCR Aryl hydrocarbon receptor OS=Mus caroli GN=Ahr PE=2 SV=1
Length = 854
Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 112/164 (68%), Gaps = 6/164 (3%)
Query: 233 LDIRGRIKILHGQNRK-----LEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
++ +GR+K LHGQN+K L P LALFAI TP PPS+LEI K +F++KHKLD +
Sbjct: 235 MNFQGRLKYLHGQNKKGKDGALLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFT 294
Query: 288 LVSMDQRGKMLLGYSDTELANMG-GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
D +G+++LGY++ EL G GY +H D+ + A +H ++KTG SGM +R
Sbjct: 295 PSGCDAKGQLILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAK 354
Query: 347 DGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRTM 390
W+W+Q+++RL+Y+N +PD++I+T RPL +EEGR+ L KR+M
Sbjct: 355 HSRWRWVQSNARLIYRNGRPDYIIATQRPLTDEEGREHLQKRSM 398
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Query: 574 ESDIVHQSVYELVHSEDREELQRQLMW---------------NSFLPPESAGISLQECFL 618
+SD++HQSVYEL+H+EDR E QRQL W + PP++A +
Sbjct: 148 QSDVIHQSVYELIHTEDRAEFQRQLHWALNPSQCTDSAQGVDEAHGPPQTAVYYTPDQLP 207
Query: 619 QENSYLLERSF 629
EN+ +ER F
Sbjct: 208 PENASFMERCF 218
>sp|Q8R4S5|AHR_MUSMM Aryl hydrocarbon receptor OS=Mus musculus molossinus GN=Ahr PE=2
SV=1
Length = 883
Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 112/163 (68%), Gaps = 6/163 (3%)
Query: 233 LDIRGRIKILHGQNRK-----LEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
++ +GR+K LHGQN+K L P LALFAI TP PPS+LEI K +F++KHKLD +
Sbjct: 231 MNFQGRLKYLHGQNKKGKDGALLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFT 290
Query: 288 LVSMDQRGKMLLGYSDTELANMG-GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
+ D +G+++LGY++ EL G GY +H D+ + A +H ++KTG SGM +R
Sbjct: 291 PIGCDAKGQLILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAK 350
Query: 347 DGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRT 389
W+W+Q+++RL+Y+N +PD++I+T RPL +EEGR+ L KR+
Sbjct: 351 HSRWRWVQSNARLIYRNGRPDYIIATQRPLTDEEGREHLQKRS 393
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 574 ESDIVHQSVYELVHSEDREELQRQLMW-----------NSFLPPESAGISLQECFLQENS 622
+SD++HQSVYEL+H+EDR E QRQL W + PP++A + EN+
Sbjct: 148 QSDVIHQSVYELIHTEDRAEFQRQLHWALNPDSAQGVDEAHGPPQAAVYYTPDQLPPENA 207
Query: 623 YLLERSF 629
+ER F
Sbjct: 208 SFMERCF 214
>sp|P30561|AHR_MOUSE Aryl hydrocarbon receptor OS=Mus musculus GN=Ahr PE=1 SV=3
Length = 848
Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 112/163 (68%), Gaps = 6/163 (3%)
Query: 233 LDIRGRIKILHGQNRK-----LEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
++ +GR+K LHGQN+K L P LALFAI TP PPS+LEI K +F++KHKLD +
Sbjct: 231 MNFQGRLKYLHGQNKKGKDGALLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFT 290
Query: 288 LVSMDQRGKMLLGYSDTELANMG-GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
+ D +G+++LGY++ EL G GY +H D+ + A +H ++KTG SGM +R
Sbjct: 291 PIGCDAKGQLILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLFAK 350
Query: 347 DGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRT 389
W+W+Q+++RL+Y+N +PD++I+T RPL +EEGR+ L KR+
Sbjct: 351 HSRWRWVQSNARLIYRNGRPDYIIATQRPLTDEEGREHLQKRS 393
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 574 ESDIVHQSVYELVHSEDREELQRQLMW-----------NSFLPPESAGISLQECFLQENS 622
+SD++HQSVYEL+H+EDR E QRQL W + PP++A + EN+
Sbjct: 148 QSDVIHQSVYELIHTEDRAEFQRQLHWALNPDSAQGVDEAHGPPQAAVYYTPDQLPPENA 207
Query: 623 YLLERSF 629
+ER F
Sbjct: 208 SFMERCF 214
>sp|Q8R4S6|AHR_MUSMC Aryl hydrocarbon receptor OS=Mus musculus castaneus GN=Ahr PE=2
SV=1
Length = 848
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 111/163 (68%), Gaps = 6/163 (3%)
Query: 233 LDIRGRIKILHGQNRK-----LEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
++ +GR+K LHGQN+K L P LALFAI TP PPS+LEI K +F++KHKLD +
Sbjct: 231 MNFQGRLKYLHGQNKKGKDGALLPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFT 290
Query: 288 LVSMDQRGKMLLGYSDTELANMG-GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
+ D +G+++LGY++ EL G GY +H D+ + A +H ++KTG SGM +R
Sbjct: 291 PIGCDAKGQLILGYTEVELCTRGSGYQFIHAADMLHCAESHIRMIKTGESGMTVFRLLAK 350
Query: 347 DGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRT 389
W+W+Q+++RL+Y+N +PD++I T RPL +EEGR+ L KR+
Sbjct: 351 HSRWRWVQSNARLIYRNGRPDYIIVTQRPLTDEEGREHLQKRS 393
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 574 ESDIVHQSVYELVHSEDREELQRQLMW-----------NSFLPPESAGISLQECFLQENS 622
+SD++HQSVYEL+H+EDR E QRQL W + PP++A + EN+
Sbjct: 148 QSDVIHQSVYELIHTEDRAEFQRQLHWALNPDSAQGVDEAHGPPQAAVYYTPDQLPPENA 207
Query: 623 YLLERSF 629
+ER F
Sbjct: 208 SFMERCF 214
>sp|P35869|AHR_HUMAN Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR PE=1 SV=2
Length = 848
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 111/162 (68%), Gaps = 6/162 (3%)
Query: 233 LDIRGRIKILHGQNRKLEE-----PPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
++ +G++K LHGQ +K ++ P LALFAI TP PPS+LEI K +F++KHKLD +
Sbjct: 237 MNFQGKLKYLHGQKKKGKDGSILPPQLALFAIATPLQPPSILEIRTKNFIFRTKHKLDFT 296
Query: 288 LVSMDQRGKMLLGYSDTELANMG-GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
+ D +G+++LGY++ EL G GY +H D+ Y A +H ++KTG SGMI +R T
Sbjct: 297 PIGCDAKGRIVLGYTEAELCTRGSGYQFIHAADMLYCAESHIRMIKTGESGMIVFRLLTK 356
Query: 347 DGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKR 388
+ W W+Q+++RL+YKN +PD++I T RPL +EEG + L KR
Sbjct: 357 NNRWTWVQSNARLLYKNGRPDYIIVTQRPLTDEEGTEHLRKR 398
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 574 ESDIVHQSVYELVHSEDREELQRQLMW 600
+SD++HQSVYEL+H+EDR E QRQL W
Sbjct: 150 QSDVIHQSVYELIHTEDRAEFQRQLHW 176
>sp|O44712|AHR_CAEEL Aryl hydrocarbon receptor protein 1 OS=Caenorhabditis elegans
GN=ahr-1 PE=1 SV=1
Length = 602
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 109/184 (59%), Gaps = 14/184 (7%)
Query: 232 RLDIRGRIKILHG------QNRKLEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLD 285
R+D+RG++ LHG R P L + +CTPF PPS ++ ++++ K+KH+LD
Sbjct: 235 RIDMRGKLMSLHGLPSSYVMGRTASGPVLGMICVCTPFVPPSTSDLASEDMILKTKHQLD 294
Query: 286 LSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRF-Q 344
+LVSMDQ+ +L +T+L M Y+LVH +D +A AH+E +K G+SG++ YR
Sbjct: 295 GALVSMDQKVYEMLEIDETDLP-MPLYNLVHVEDAVCMAEAHKEAIKNGSSGLLVYRLVS 353
Query: 345 TNDGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRT------MDFKVSYLD 398
T ++Q+S R+ YKNSKP+ + THR L E EG LL KR+ + F S+L
Sbjct: 354 TKTRRTYFVQSSCRMFYKNSKPESIGLTHRLLNEVEGTMLLEKRSTLKAKLLSFDDSFLQ 413
Query: 399 AGLN 402
+ N
Sbjct: 414 SPRN 417
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 562 ADQNSKGYSSPFESDIVHQSVYELVHSEDREELQRQLMWNSFLPPESAGISLQECFLQEN 621
A +N + Y +SD++HQ VY+L+HSEDR+++++QL N +P SA + F +N
Sbjct: 153 ASENVENYLGFHQSDVLHQPVYDLIHSEDRDDIRQQLDSNFHIPTSSASNQF-DVFAPQN 211
Query: 622 SYLLERS 628
S LER+
Sbjct: 212 SKYLERN 218
>sp|O61735|CLOCK_DROME Circadian locomoter output cycles protein kaput OS=Drosophila
melanogaster GN=Clk PE=2 SV=3
Length = 1027
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 278 FKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASG 337
F SKH ++ + +D R ++GY E+ GYD H+DDL + + H+EL +TG
Sbjct: 267 FTSKHSMEWKFLFLDHRAPPIIGYMPFEVLGTSGYDYYHFDDLDSIVACHEELRQTGEGK 326
Query: 338 MIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTHR 374
YRF T W WLQT + Y NSKPD+V+ TH+
Sbjct: 327 SCYYRFLTKGQQWIWLQTDYYVSYHQFNSKPDYVVCTHK 365
>sp|Q99743|NPAS2_HUMAN Neuronal PAS domain-containing protein 2 OS=Homo sapiens GN=NPAS2
PE=2 SV=3
Length = 824
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 278 FKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASG 337
F S+H L+ + +D R ++GY E+ GYD H DDL +A HQ L++ G
Sbjct: 251 FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCHQHLMQFGKGK 310
Query: 338 MIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTH 373
YRF T W WLQT + Y NSKP+F++ TH
Sbjct: 311 SCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTH 348
>sp|Q91YB2|CLOCK_SPACA Circadian locomoter output cycles protein kaput OS=Spalax carmeli
GN=Clock PE=2 SV=1
Length = 865
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Query: 269 LEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQ 328
+E P++E F S+H L+ + +D R ++GY E+ GYD H DDL +A H+
Sbjct: 269 VEEPNEE--FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHE 326
Query: 329 ELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGRDLLG 386
L++ G YRF T W WLQT + Y NS+P+F++ TH + E R
Sbjct: 327 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR-AER 385
Query: 387 KRTMDFKVSYLDAGLNNSYFSDSD 410
+R + + S DA + S S SD
Sbjct: 386 RRELGIEESLPDAAADKSQDSGSD 409
>sp|Q91YB0|CLOCK_NANGA Circadian locomoter output cycles protein kaput OS=Nannospalax
galili GN=Clock PE=1 SV=1
Length = 865
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Query: 269 LEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQ 328
+E P++E F S+H L+ + +D R ++GY E+ GYD H DDL +A H+
Sbjct: 269 VEEPNEE--FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHE 326
Query: 329 ELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGRDLLG 386
L++ G YRF T W WLQT + Y NS+P+F++ TH + E R
Sbjct: 327 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR-AER 385
Query: 387 KRTMDFKVSYLDAGLNNSYFSDSD 410
+R + + S DA + S S SD
Sbjct: 386 RRELGIEESLPDAAADKSQDSGSD 409
>sp|Q5ZQU2|NPAS2_CHICK Neuronal PAS domain-containing protein 2 OS=Gallus gallus GN=NPAS2
PE=2 SV=1
Length = 815
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 268 LLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAH 327
++E P +E F S+H L+ + +D R ++GY E+ GYD H DDL +A H
Sbjct: 243 IVEEPLEE--FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHIDDLELLARCH 300
Query: 328 QELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTH 373
+ L++ G YRF T W WLQT + Y NSKP+F++ TH
Sbjct: 301 EHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTH 348
>sp|P97460|NPAS2_MOUSE Neuronal PAS domain-containing protein 2 OS=Mus musculus GN=Npas2
PE=1 SV=1
Length = 816
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 278 FKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASG 337
F S+H L+ + +D R ++GY E+ GY+ H DDL +A HQ L++ G
Sbjct: 251 FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYNYYHIDDLELLARCHQHLMQFGKGK 310
Query: 338 MIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTH 373
YRF T W WLQT + Y NSKP+F++ TH
Sbjct: 311 SCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTH 348
>sp|P05709|SIM_DROME Protein single-minded OS=Drosophila melanogaster GN=sim PE=1 SV=3
Length = 697
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Query: 254 LALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYD 313
L L A+ ++ EI + MF + KLD+ L+ D R L GY +L Y
Sbjct: 256 LGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQLTGYEPQDLIEKTLYQ 315
Query: 314 LVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVIS 371
+H D+ + +HQ LL G YRF T GGW W+Q+ + LV+ ++S+ F++S
Sbjct: 316 YIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGGGWVWVQSYATLVHNSRSSREVFIVS 375
Query: 372 THRPLMEEEGRDLL 385
+ L E E +DL+
Sbjct: 376 VNYVLSEREVKDLV 389
>sp|Q91YA8|CLOCK_SPAJD Circadian locomoter output cycles protein kaput OS=Spalax judaei
GN=Clock PE=2 SV=1
Length = 865
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 269 LEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQ 328
+E P++E F S+H L+ + +D R ++GY E+ GYD H DDL +A H+
Sbjct: 269 VEEPNEE--FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHE 326
Query: 329 ELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGRDLLG 386
L++ G YRF T W WLQT + Y NS+P+F++ TH + E R
Sbjct: 327 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR-AER 385
Query: 387 KRTMDFKVSYLDAGLNNSYFSDSD 410
+R + + S DA + S SD
Sbjct: 386 RRELGIEESLPDATADKGQDSGSD 409
>sp|Q9WVS9|CLOCK_RAT Circadian locomoter output cycles protein kaput OS=Rattus
norvegicus GN=Clock PE=2 SV=1
Length = 862
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 269 LEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQ 328
+E P++E F S+H L+ + +D R ++GY E+ GYD H DDL +A H+
Sbjct: 269 VEEPNEE--FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLESLAKCHE 326
Query: 329 ELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGRDLLG 386
L++ G YRF T W WLQT + Y NS+P+F++ TH + E R
Sbjct: 327 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR-AER 385
Query: 387 KRTMDFKVSYLDAGLNNSYFSDSD 410
+R + + S + + S S SD
Sbjct: 386 RRELGVEESLPETAADKSQDSGSD 409
>sp|O08785|CLOCK_MOUSE Circadian locomoter output cycles protein kaput OS=Mus musculus
GN=Clock PE=1 SV=1
Length = 855
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 269 LEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQ 328
+E P++E F S+H L+ + +D R ++GY E+ GYD H DDL +A H+
Sbjct: 269 VEEPNEE--FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHE 326
Query: 329 ELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGRDLLG 386
L++ G YRF T W WLQT + Y NS+P+F++ TH + E R
Sbjct: 327 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR-AER 385
Query: 387 KRTMDFKVSYLDAGLNNSYFSDSD 410
+R + + S + + S S SD
Sbjct: 386 RRELGIEESLPETAADKSQDSGSD 409
>sp|Q5RAK8|CLOCK_PONAB Circadian locomoter output cycles protein kaput OS=Pongo abelii
GN=CLOCK PE=2 SV=1
Length = 846
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 269 LEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQ 328
+E P++E F S+H L+ + +D R ++GY E+ GYD H DDL +A H+
Sbjct: 269 VEEPNEE--FASRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHE 326
Query: 329 ELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGRDLLG 386
L++ G YRF T W WLQT + Y NS+P+F++ TH + E R
Sbjct: 327 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR-AER 385
Query: 387 KRTMDFKVSYLDAGLNNSYFSDSD 410
+R + + S + + S S SD
Sbjct: 386 RRELSIEESLPEIAADKSQDSGSD 409
>sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles protein kaput OS=Homo sapiens
GN=CLOCK PE=1 SV=1
Length = 846
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 269 LEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQ 328
+E P++E F S+H L+ + +D R ++GY E+ GYD H DDL +A H+
Sbjct: 269 VEEPNEE--FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHE 326
Query: 329 ELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGRDLLG 386
L++ G YRF T W WLQT + Y NS+P+F++ TH + E R
Sbjct: 327 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR-AER 385
Query: 387 KRTMDFKVSYLDAGLNNSYFSDSD 410
+R + + S + + S S SD
Sbjct: 386 RRELGIEESLPETAADKSQDSGSD 409
>sp|Q8QGQ6|CLOCK_CHICK Circadian locomoter output cycles protein kaput OS=Gallus gallus
GN=CLOCK PE=1 SV=2
Length = 875
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 269 LEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQ 328
+E P++E F S+H L+ + +D R ++GY E+ GYD H DDL +A H+
Sbjct: 269 VEEPNEE--FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLDNLAKCHE 326
Query: 329 ELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGR 382
L++ G YRF T W WLQT + Y NS+P+F++ TH + E R
Sbjct: 327 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR 382
>sp|Q6YGZ4|CLOCK_TYTAL Circadian locomoter output cycles protein kaput OS=Tyto alba
GN=CLOCK PE=2 SV=1
Length = 851
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 269 LEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQ 328
+E P++E F S+H L+ + +D R ++GY E+ GYD H DDL +A H+
Sbjct: 269 VEEPNEE--FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLDNLAKCHE 326
Query: 329 ELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGR 382
L++ G YRF T W WLQT + Y NS+P+F++ TH + E R
Sbjct: 327 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR 382
>sp|Q9JHS1|EPAS1_RAT Endothelial PAS domain-containing protein 1 OS=Rattus norvegicus
GN=Epas1 PE=2 SV=1
Length = 874
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 19/196 (9%)
Query: 250 EEPPLA-LFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELAN 308
+EP L+ L +C P PS ++IP F S+H +D+ D R L+GY EL
Sbjct: 215 KEPLLSCLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDMKFTYCDDRILELVGYHPEELLG 274
Query: 309 MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKP 366
Y+ H D + +HQ L G YR GG+ WL+T +VY +N +P
Sbjct: 275 RSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVVYNPRNLQP 334
Query: 367 DFVISTHRPLMEEEGRDLLGKRTMDFKVSYLDAGLNNSYFSDSDQLTPSHQT-------- 418
++ + L E E D++ S NS F SD + S ++
Sbjct: 335 QCIMCVNYVLSEIEKNDVVVSMDQTESCSSHTLMAMNSIFDTSDDVALSEKSNYLFTNLK 394
Query: 419 --------LAPSPGSA 426
LAP+PG A
Sbjct: 395 EEPEDLAQLAPTPGDA 410
>sp|P97481|EPAS1_MOUSE Endothelial PAS domain-containing protein 1 OS=Mus musculus
GN=Epas1 PE=1 SV=2
Length = 874
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 23/198 (11%)
Query: 250 EEPPLA-LFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELAN 308
+EP L+ L +C P PS ++IP F S+H +D+ D R L+GY EL
Sbjct: 215 KEPLLSCLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDMKFTYCDDRILELIGYHPEELLG 274
Query: 309 MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKP 366
Y+ H D + +HQ L G YR GG+ WL+T ++Y +N +P
Sbjct: 275 RSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQP 334
Query: 367 DFVISTHRPLMEEEGRDLLGKRTMDFKVSYLDAGL--NNSYFSDSDQLTPSHQT------ 418
++ + L E E D++ +MD S L NS F SD + + ++
Sbjct: 335 QCIMCVNYVLSEIEKNDVV--FSMDQTESLFKPHLMAMNSIFDSSDDVAVTEKSNYLFTK 392
Query: 419 ----------LAPSPGSA 426
LAP+PG A
Sbjct: 393 LKEEPEELAQLAPTPGDA 410
>sp|Q0PGG7|HIF1A_BOSMU Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens GN=HIF1A
PE=2 SV=1
Length = 823
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 250 EEPPL-ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELAN 308
++PP+ L IC P PS +EIP F S+H LD+ D+R L+GY EL
Sbjct: 213 KKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLG 272
Query: 309 MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKP 366
Y+ H D ++ H ++ G YR GG+ W++T + ++Y KNS+P
Sbjct: 273 RSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKKGGYVWIETQATVIYNTKNSQP 332
Query: 367 DFVISTH 373
++ +
Sbjct: 333 QCIVCVN 339
>sp|Q99814|EPAS1_HUMAN Endothelial PAS domain-containing protein 1 OS=Homo sapiens
GN=EPAS1 PE=1 SV=3
Length = 870
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 233 LDIRGRIKIL-----HGQNRKLEEPPLA-LFAICTPFGPPSLLEIPHKEVMFKSKHKLDL 286
L G++K+ H +EP L+ L +C P PS ++IP F S+H +D+
Sbjct: 193 LHCTGQVKVYNNCPPHNSLCGYKEPLLSCLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDM 252
Query: 287 SLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTN 346
D R L+GY EL Y+ H D + +HQ L G YR
Sbjct: 253 KFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAK 312
Query: 347 DGGWQWLQTSSRLVY--KNSKPDFVISTHRPLMEEEGRDLLGKRTMDFKVSYLDAGL--N 402
GG+ WL+T ++Y +N +P ++ + L E E D++ +MD S L
Sbjct: 313 HGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKNDVV--FSMDQTESLFKPHLMAM 370
Query: 403 NSYFSDSDQLTPSHQT----------------LAPSPGSA 426
NS F S + S ++ LAP+PG A
Sbjct: 371 NSIFDSSGKGAVSEKSNFLFTKLKEEPEELAQLAPTPGDA 410
>sp|Q9YIB9|HIF1A_CHICK Hypoxia-inducible factor 1-alpha OS=Gallus gallus GN=HIF1A PE=2
SV=2
Length = 811
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 233 LDIRGRIKILHGQNRKL----EEPPL-ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLS 287
L G I++ N + ++PP+ L IC P PS +E+P F S+H LD+
Sbjct: 192 LHCTGHIRVYDTCNNQTHCGYKKPPMTCLVLICEPIPHPSNIEVPLDSKTFLSRHSLDMK 251
Query: 288 LVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTND 347
D+R L+GY EL Y+ H D ++ H ++ G YR
Sbjct: 252 FSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKQ 311
Query: 348 GGWQWLQTSSRLVY--KNSKPDFVISTHRPLMEEEGRDLL 385
GG+ W++T + ++Y KNS+P ++ + L +DL+
Sbjct: 312 GGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLI 351
>sp|Q9XTA5|HIF1A_BOVIN Hypoxia-inducible factor 1-alpha OS=Bos taurus GN=HIF1A PE=2 SV=1
Length = 823
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 250 EEPPL-ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELAN 308
++PP+ L IC P PS +EIP F S+H LD+ D+R L+GY EL
Sbjct: 213 KKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLG 272
Query: 309 MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKP 366
Y+ H D ++ H ++ G YR GG+ W++T + ++Y KNS+P
Sbjct: 273 RSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWIETQATVIYNTKNSQP 332
Query: 367 DFVISTH 373
++ +
Sbjct: 333 QCIVCVN 339
>sp|Q98SW2|HIF1A_ONCMY Hypoxia-inducible factor 1-alpha OS=Oncorhynchus mykiss GN=hif1a
PE=2 SV=1
Length = 766
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 256 LFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLV 315
L +C P PS +E P F S+H LD+ D+R L+GY +L N Y+
Sbjct: 222 LVLVCDPIPHPSNIEAPLDTKTFLSRHTLDMKFTYCDERITELMGYDPEDLLNRSVYEYY 281
Query: 316 HYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVISTH 373
H D ++ H L G YR GG+ W++T + ++Y KNS+P V+ +
Sbjct: 282 HALDSDHLMKTHHNLFAKGQVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVN 341
Query: 374 RPL--MEEEGRDLLGKRTMDFK 393
L +EEE L ++T D +
Sbjct: 342 YVLSGIEEEKMMLSLEQTEDMR 363
>sp|Q16665|HIF1A_HUMAN Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1 SV=1
Length = 826
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 250 EEPPL-ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELAN 308
++PP+ L IC P PS +EIP F S+H LD+ D+R L+GY EL
Sbjct: 213 KKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLG 272
Query: 309 MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKP 366
Y+ H D ++ H ++ G YR GG+ W++T + ++Y KNS+P
Sbjct: 273 RSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQP 332
Query: 367 DFVISTH 373
++ +
Sbjct: 333 QCIVCVN 339
>sp|Q309Z6|HIF1A_EOSBA Hypoxia-inducible factor 1-alpha OS=Eospalax baileyi GN=HIF1A PE=2
SV=1
Length = 819
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 250 EEPPL-ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELAN 308
++PP+ L IC P PS +EIP F S+H LD+ D+R L+GY EL
Sbjct: 214 KKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLG 273
Query: 309 MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKP 366
Y+ H D ++ H ++ G YR GG+ W++T + ++Y KNS+P
Sbjct: 274 RSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQP 333
Query: 367 DFVISTH 373
++ +
Sbjct: 334 QCIVCVN 340
>sp|Q61221|HIF1A_MOUSE Hypoxia-inducible factor 1-alpha OS=Mus musculus GN=Hif1a PE=1 SV=3
Length = 836
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 250 EEPPL-ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELAN 308
++PP+ L IC P PS +EIP F S+H LD+ D+R L+GY EL
Sbjct: 213 KKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLG 272
Query: 309 MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKP 366
Y+ H D ++ H ++ G YR GG+ W++T + ++Y KNS+P
Sbjct: 273 RSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQP 332
Query: 367 DFVISTH 373
++ +
Sbjct: 333 QCIVCVN 339
>sp|Q9I8A9|HIF1A_XENLA Hypoxia-inducible factor 1-alpha OS=Xenopus laevis GN=hif1a PE=2
SV=1
Length = 805
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 250 EEPPL-ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELAN 308
++PP+ + IC P PS +E P F S+H LD+ D+R L+GY EL
Sbjct: 214 KKPPMTCMVVICEPIPHPSNIEFPLDSKTFLSRHSLDMKFSYCDERVTELVGYEPDELLG 273
Query: 309 MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKP 366
Y+ H D ++ + + G YR GG+ W++T + ++Y KNS+P
Sbjct: 274 RSVYEYYHALDSDHLTKPNYNMFTKGQVTTGQYRMLAKKGGYVWVETQATVIYNSKNSQP 333
Query: 367 DFVISTHRPLMEEEGRDLL 385
++ + L E +DL+
Sbjct: 334 QCIVCVNYVLSEVVEKDLI 352
>sp|O35800|HIF1A_RAT Hypoxia-inducible factor 1-alpha OS=Rattus norvegicus GN=Hif1a PE=2
SV=1
Length = 825
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 250 EEPPL-ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELAN 308
++PP+ L IC P PS +EIP F S+H LD+ D+R L+GY EL
Sbjct: 213 KKPPMTCLVLICEPIPHPSNIEIPLDSKTFLSRHSLDMKFSYCDERITELMGYEPEELLG 272
Query: 309 MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKP 366
Y+ H D ++ H ++ G YR GG+ W++T + ++Y K+S+P
Sbjct: 273 RSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKDSQP 332
Query: 367 DFVISTH 373
++ +
Sbjct: 333 QCIVCVN 339
>sp|Q98SJ5|SIM1A_DANRE Single-minded homolog 1-A OS=Danio rerio GN=sim1a PE=2 SV=1
Length = 745
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 254 LALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYD 313
+ L A+ P ++ EI MF + LD+ L+ +D R L GY +L Y
Sbjct: 208 VGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYH 267
Query: 314 LVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVIS 371
VH D ++ AH LL G YRF GGW W+Q+ + +V+ ++S+P ++S
Sbjct: 268 HVHSCDTFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRPHCIVS 327
Query: 372 THRPLMEEEGRDL 384
+ L + E + L
Sbjct: 328 VNYVLTDTEYKGL 340
>sp|Q61045|SIM1_MOUSE Single-minded homolog 1 OS=Mus musculus GN=Sim1 PE=1 SV=3
Length = 765
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 254 LALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYD 313
+ L A+ P ++ EI MF + LD+ L+ +D R L GY +L Y
Sbjct: 208 VGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYH 267
Query: 314 LVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVIS 371
VH D ++ AH LL G YRF GGW W+Q+ + +V+ ++S+P ++S
Sbjct: 268 HVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKQGGWVWVQSYATIVHNSRSSRPHCIVS 327
Query: 372 THRPLMEEEGRDL 384
+ L + E + L
Sbjct: 328 VNYVLTDTEYKGL 340
>sp|P81133|SIM1_HUMAN Single-minded homolog 1 OS=Homo sapiens GN=SIM1 PE=2 SV=2
Length = 766
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 254 LALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYD 313
+ L A+ P ++ EI MF + LD+ L+ +D R L GY +L Y
Sbjct: 208 VGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYH 267
Query: 314 LVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVIS 371
VH D ++ AH LL G YRF GGW W+Q+ + +V+ ++S+P ++S
Sbjct: 268 HVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVS 327
Query: 372 THRPLMEEEGRDL 384
+ L + E + L
Sbjct: 328 VNYVLTDTEYKGL 340
>sp|A2T6X9|SIM1_PANTR Single-minded homolog 1 OS=Pan troglodytes GN=SIM1 PE=3 SV=1
Length = 766
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 254 LALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYD 313
+ L A+ P ++ EI MF + LD+ L+ +D R L GY +L Y
Sbjct: 208 VGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYH 267
Query: 314 LVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVIS 371
VH D ++ AH LL G YRF GGW W+Q+ + +V+ ++S+P ++S
Sbjct: 268 HVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVS 327
Query: 372 THRPLMEEEGRDL 384
+ L + E + L
Sbjct: 328 VNYVLTDTEYKGL 340
>sp|Q24119|TRH_DROME Protein trachealess OS=Drosophila melanogaster GN=trh PE=1 SV=4
Length = 1022
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
Query: 246 NRKLEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTE 305
+RK + P L + A+ PPS+ EI + MF ++ DL + + R LL YS +
Sbjct: 373 SRKSQPPLLGMVALAIALPPPSVHEIRLECDMFVTRVNFDLRVAHCEPRVSDLLDYSPED 432
Query: 306 LANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLV--YKN 363
L N Y L H +D + +H +L++ G YR GG+ WLQT + +V KN
Sbjct: 433 LVNKSLYSLCHAEDANRLRKSHSDLIEKGQVLTGYYRLMNKSGGYTWLQTCATVVCSTKN 492
Query: 364 SKPDFVISTHRPLMEEEGRDLL 385
+ +I + + E +++
Sbjct: 493 ADEQNIICVNYVISNRENENMI 514
>sp|A1YFY6|SIM1_PANPA Single-minded homolog 1 OS=Pan paniscus GN=SIM1 PE=3 SV=1
Length = 766
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 254 LALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYD 313
+ L A+ P ++ EI MF + LD+ L+ +D R L GY +L Y
Sbjct: 208 VGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYH 267
Query: 314 LVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVIS 371
VH D ++ AH LL G YRF GGW W+Q+ + +V+ ++S+P ++S
Sbjct: 268 HVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVS 327
Query: 372 THRPLMEEEGRDL 384
+ L + E + L
Sbjct: 328 VNYVLTDTEYKGL 340
>sp|Q14190|SIM2_HUMAN Single-minded homolog 2 OS=Homo sapiens GN=SIM2 PE=1 SV=2
Length = 667
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 254 LALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYD 313
+ L A+ P ++ EI MF + LDL L+ +D R + GY +L Y
Sbjct: 208 VGLVAVGQSLPPSAITEIKLYSNMFMFRASLDLKLIFLDSRVTEVTGYEPQDLIEKTLYH 267
Query: 314 LVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVIS 371
VH D+ ++ AH LL G YR + GGW W+Q+ + +V+ ++S+P ++S
Sbjct: 268 HVHGCDVFHLRYAHHLLLVKGQVTTKYYRLLSKRGGWVWVQSYATVVHNSRSSRPHCIVS 327
Query: 372 THRPLMEEEGRDL 384
+ L E E ++L
Sbjct: 328 VNYVLTEIEYKEL 340
>sp|Q0VBL6|HIF3A_MOUSE Hypoxia-inducible factor 3-alpha OS=Mus musculus GN=Hif3a PE=1 SV=2
Length = 662
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 95/241 (39%), Gaps = 48/241 (19%)
Query: 176 NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKW--------KESPPVVSPKSYYQSYNEN 227
G + Y S+ + K+ G L+++ IG + + +E ++P+
Sbjct: 101 EGDMAYLSENVSKHLG-----LSQLELIGHSIFDFIHPCDQEELQDALTPRPNLSKKKLE 155
Query: 228 GPSER---------LDIRGRI--------KILH--GQNRKLE-------------EPPL- 254
P+ER L RGR K+LH G R + EPPL
Sbjct: 156 APTERHFSLRMKSTLTSRGRTLNLKAATWKVLHCSGHMRAYKPPAQTSPAGSPRSEPPLQ 215
Query: 255 ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDL 314
L IC P+ LE P F S+H LD+ D+R + GYS +L Y+
Sbjct: 216 CLVLICEAIPHPASLEPPLGRGAFLSRHSLDMKFTYCDERIAEVAGYSPDDLIGCSAYEY 275
Query: 315 VHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYKNSKP--DFVIST 372
+H D V+ + LL G + YRF GG+ W QT + +V P + +I
Sbjct: 276 IHALDSDAVSRSIHTLLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSESIICV 335
Query: 373 H 373
H
Sbjct: 336 H 336
>sp|Q9JHS2|HIF3A_RAT Hypoxia-inducible factor 3-alpha OS=Rattus norvegicus GN=Hif3a PE=1
SV=1
Length = 662
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 251 EPPL-ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANM 309
EPPL L IC P+ LE P F S+H LD+ D+R + GYS +L
Sbjct: 211 EPPLQCLVLICEAIPHPASLEPPLGRGAFLSRHSLDMKFTYCDERIAEVAGYSPDDLIGC 270
Query: 310 GGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYKNSKP--D 367
Y+ +H D V+ + LL G + YRF GG+ W QT + +V P +
Sbjct: 271 SAYEYIHALDSDAVSRSIHTLLSKGQAVTGQYRFLARTGGYLWTQTQATVVSGGRGPQSE 330
Query: 368 FVISTH 373
+I H
Sbjct: 331 SIICVH 336
>sp|Q61079|SIM2_MOUSE Single-minded homolog 2 OS=Mus musculus GN=Sim2 PE=1 SV=1
Length = 657
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 254 LALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYD 313
+ L A+ P ++ EI MF + LDL L+ +D R L GY +L Y
Sbjct: 208 VGLVAVGQSLPPSAITEIKLHSNMFMFRASLDLKLIFLDSRVTELTGYEPQDLIEKTLYH 267
Query: 314 LVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVIS 371
VH D ++ AH LL G YR + GGW W+Q+ + +V+ ++S+P ++S
Sbjct: 268 HVHGCDTFHLRYAHHLLLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVS 327
Query: 372 THRPLMEEEGRDL 384
+ L + E ++L
Sbjct: 328 VNYVLTDVEYKEL 340
>sp|Q9Y2N7|HIF3A_HUMAN Hypoxia-inducible factor 3-alpha OS=Homo sapiens GN=HIF3A PE=1 SV=2
Length = 669
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 251 EPPL-ALFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANM 309
EPPL L IC P LE P F S+H LD+ D R + GYS +L
Sbjct: 213 EPPLQCLVLICEAIPHPGSLEPPLGRGAFLSRHSLDMKFTYCDDRIAEVAGYSPDDLIGC 272
Query: 310 GGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYKNSKP--D 367
Y+ +H D V+ + LL G + YRF GG+ W QT + +V P +
Sbjct: 273 SAYEYIHALDSDAVSKSIHTLLSKGQAVTGQYRFLARSGGYLWTQTQATVVSGGRGPQSE 332
Query: 368 FVISTH 373
++ H
Sbjct: 333 SIVCVH 338
>sp|Q24167|SIMA_DROME Protein similar OS=Drosophila melanogaster GN=sima PE=2 SV=2
Length = 1507
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%)
Query: 256 LFAICTPFGPPSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLV 315
L AI P PS +EIP F +KH LD+ +D + LLGYS +L + +
Sbjct: 299 LMAIGRPIPHPSNIEIPLGTSTFLTKHSLDMRFTYVDDKMHDLLGYSPKDLLDTSLFSCQ 358
Query: 316 HYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYKNSKPDFVISTH 373
H D + + + +L G YRF GG+ W+ + + +VY KP V+ +
Sbjct: 359 HGADSERLMATFKSVLSKGQGETSRYRFLGKYGGYCWILSQATIVYDKLKPQSVVCVN 416
>sp|Q8CJH6|NPAS4_RAT Neuronal PAS domain-containing protein 4 OS=Rattus norvegicus
GN=Npas4 PE=2 SV=1
Length = 802
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 276 VMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGA 335
MF+S+H DL+L+ + + + LG+ +EL Y L+H +DLA+ +S H LL
Sbjct: 217 AMFQSRHAKDLALLDISESVLIYLGFERSELLCKSWYGLLHPEDLAHASSQHYRLLAENG 276
Query: 336 S--GMIAYRFQTNDGGWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDL 384
+ R Q GGW W+ ++Y + + + + P+ + E L
Sbjct: 277 DIQAEMVVRLQAKHGGWTWIYC---MLYSDGPEGPITANNYPISDTEAWSL 324
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 259,689,144
Number of Sequences: 539616
Number of extensions: 12023742
Number of successful extensions: 34240
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 33713
Number of HSP's gapped (non-prelim): 551
length of query: 630
length of database: 191,569,459
effective HSP length: 124
effective length of query: 506
effective length of database: 124,657,075
effective search space: 63076479950
effective search space used: 63076479950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)