Query psy8265
Match_columns 630
No_of_seqs 403 out of 1289
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:56:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dj3_A Period circadian protei 100.0 2.1E-38 7.1E-43 331.6 12.8 215 160-386 36-289 (317)
2 4dj2_A Period circadian protei 100.0 1.1E-38 3.6E-43 334.2 9.2 225 150-386 20-290 (320)
3 3gdi_A Period circadian protei 100.0 6.6E-38 2.2E-42 326.6 13.9 222 151-386 18-279 (309)
4 4f3l_B BMAL1B; BHLH, PAS, circ 100.0 3.7E-37 1.3E-41 328.1 11.3 258 110-381 46-386 (387)
5 4f3l_A Mclock, circadian locom 100.0 1.1E-34 3.7E-39 305.7 15.0 261 110-383 42-360 (361)
6 3rty_A Period circadian protei 100.0 4.1E-34 1.4E-38 301.5 11.6 216 159-386 2-271 (339)
7 1oj5_A Steroid receptor coacti 99.8 1.2E-21 4E-26 181.1 7.1 107 274-381 5-117 (132)
8 3f1p_A Endothelial PAS domain- 99.8 4.3E-19 1.5E-23 151.0 11.3 109 273-381 6-116 (117)
9 3f1p_B ARYL hydrocarbon recept 99.8 2.5E-18 8.7E-23 147.4 12.3 108 274-381 10-120 (121)
10 2kdk_A ARYL hydrocarbon recept 99.7 4.2E-16 1.4E-20 132.5 13.5 114 266-379 3-119 (121)
11 3h9w_A Diguanylate cyclase wit 99.6 8.1E-15 2.8E-19 124.4 11.0 100 284-383 12-113 (115)
12 3mr0_A Sensory box histidine k 99.6 1.4E-14 4.7E-19 128.9 11.8 115 279-393 22-140 (142)
13 3ewk_A Sensor protein; PAS dom 99.6 1.7E-14 6E-19 138.9 12.7 199 172-375 4-227 (227)
14 2vlg_A Sporulation kinase A; h 99.5 9.7E-14 3.3E-18 122.6 10.0 100 276-378 9-110 (111)
15 3nja_A Probable ggdef family p 99.4 9.7E-13 3.3E-17 109.7 10.4 102 279-380 20-124 (125)
16 3icy_A Sensor protein; sensory 99.4 1.7E-12 5.9E-17 108.0 11.5 99 279-377 17-118 (118)
17 2gj3_A Nitrogen fixation regul 99.4 3.1E-12 1.1E-16 109.7 11.7 103 278-380 17-120 (120)
18 2pr5_A Blue-light photorecepto 99.4 2.9E-12 9.8E-17 111.7 11.6 111 281-392 14-128 (132)
19 3ue6_A Aureochrome1; PAS/LOV d 99.4 3E-12 1E-16 113.5 11.6 113 281-393 50-166 (166)
20 1n9l_A PHOT-LOV1, putative blu 99.3 9.9E-12 3.4E-16 106.0 10.6 95 284-378 14-109 (109)
21 4eet_B Phototropin-2; LOV, blu 99.3 1.7E-11 5.7E-16 100.6 11.5 99 281-379 12-114 (115)
22 3t50_A Blue-light-activated hi 99.3 2.6E-11 8.9E-16 102.8 10.7 101 281-381 12-116 (128)
23 4hia_A LOV protein; PAS, HTH, 99.2 2.1E-11 7.3E-16 110.5 10.2 121 282-408 23-149 (176)
24 3mqq_A Transcriptional regulat 99.2 1.5E-11 5.1E-16 104.9 7.6 99 283-381 19-118 (120)
25 2v0u_A NPH1-1, LOV2; kinase, t 99.2 7.5E-11 2.6E-15 99.2 11.2 114 279-392 15-132 (146)
26 3ewk_A Sensor protein; PAS dom 99.2 7.1E-11 2.4E-15 113.6 12.1 108 279-386 2-111 (227)
27 2wkq_A NPH1-1, RAS-related C3 99.2 7.2E-11 2.5E-15 119.5 11.8 103 281-383 26-132 (332)
28 3eeh_A Putative light and redo 99.2 7.9E-11 2.7E-15 96.7 9.9 99 278-377 23-125 (125)
29 2vv6_A FIXL, sensor protein FI 99.2 1.3E-10 4.5E-15 99.1 11.3 103 279-382 6-112 (119)
30 3p7n_A Sensor histidine kinase 99.2 1.4E-10 4.7E-15 113.2 11.4 102 278-379 75-180 (258)
31 3lyx_A Sensory BOX/ggdef domai 99.1 4.1E-10 1.4E-14 91.7 12.3 103 279-381 20-123 (124)
32 1byw_A Protein (human ERG pota 99.1 4.6E-10 1.6E-14 89.4 10.3 96 284-379 12-110 (110)
33 3sw1_A Sensory box protein; li 99.1 3.7E-10 1.3E-14 99.8 10.7 114 279-392 38-156 (162)
34 3mjq_A Uncharacterized protein 99.1 5E-10 1.7E-14 93.8 10.8 101 279-381 12-112 (126)
35 2z6d_A Phototropin-2; PAS-fold 99.1 7.1E-10 2.4E-14 90.7 11.5 99 284-382 27-126 (130)
36 3luq_A Sensor protein; PAS, hi 99.1 6E-10 2.1E-14 91.4 10.2 98 279-377 16-114 (114)
37 1d06_A Nitrogen fixation regul 99.0 9.8E-10 3.4E-14 95.3 11.0 98 279-377 29-130 (130)
38 3d72_A Vivid PAS protein VVD; 99.0 9.2E-10 3.1E-14 96.4 9.4 92 284-375 46-149 (149)
39 2r78_A Sensor protein; sensory 99.0 1.1E-09 3.7E-14 94.2 8.4 95 278-377 23-117 (117)
40 2l0w_A Potassium voltage-gated 98.9 4.8E-09 1.6E-13 87.5 10.5 101 279-379 32-138 (138)
41 3olo_A Two-component sensor hi 98.9 4.9E-09 1.7E-13 86.9 8.2 93 279-377 26-118 (118)
42 3k3c_A Protein RV1364C/MT1410; 98.9 4.7E-09 1.6E-13 93.0 8.4 111 279-391 30-148 (158)
43 4dj3_A Period circadian protei 98.9 8.8E-10 3E-14 115.2 4.1 82 501-606 6-95 (317)
44 3bwl_A Sensor protein; structu 98.8 1.8E-08 6.3E-13 85.6 9.5 95 279-377 30-126 (126)
45 1v9y_A Heme PAS sensor protein 98.8 2.4E-08 8.2E-13 87.5 9.2 102 279-381 53-158 (167)
46 4eho_A Bacteriophytochrome, PA 98.7 2.9E-09 9.9E-14 120.3 2.2 102 279-381 531-633 (635)
47 3gdi_A Period circadian protei 98.7 1.1E-08 3.6E-13 106.7 6.2 64 514-600 15-79 (309)
48 3kx0_X Uncharacterized protein 98.7 9.1E-09 3.1E-13 95.6 4.7 116 279-396 50-177 (185)
49 3mfx_A Sensory BOX/ggdef famil 98.7 1.8E-08 6E-13 90.8 5.8 97 279-377 20-123 (129)
50 4dj2_A Period circadian protei 98.7 4E-09 1.4E-13 110.4 1.6 57 534-601 34-91 (320)
51 1ll8_A PAS kinase; PAS domain, 98.6 1.3E-08 4.3E-13 86.0 3.1 98 279-377 11-113 (114)
52 3fc7_A HTR-like protein, senso 98.6 6.8E-08 2.3E-12 81.0 6.2 94 278-377 31-125 (125)
53 2vlg_A Sporulation kinase A; h 98.5 2E-08 7E-13 88.3 1.5 46 166-216 7-53 (111)
54 3mxq_A Sensor protein; PSI2, M 98.5 1.5E-07 5E-12 88.0 7.3 103 278-381 34-149 (152)
55 3fg8_A Uncharacterized protein 98.5 1.5E-07 5.1E-12 80.8 5.7 94 279-379 25-118 (118)
56 3b33_A Sensor protein; structu 98.4 4.8E-07 1.6E-11 75.7 8.2 95 279-377 20-115 (115)
57 4f3l_B BMAL1B; BHLH, PAS, circ 98.4 4.9E-07 1.7E-11 96.2 9.0 54 274-327 94-148 (387)
58 4f3l_A Mclock, circadian locom 98.3 1.6E-06 5.5E-11 91.1 11.1 87 275-361 95-198 (361)
59 2qkp_A Uncharacterized protein 98.2 1.5E-05 5.2E-10 73.9 12.2 100 279-382 32-136 (151)
60 3rty_A Period circadian protei 98.1 3.5E-06 1.2E-10 88.8 8.1 54 276-329 3-57 (339)
61 3a0s_A Sensor protein; PAS-fol 98.1 1.3E-05 4.6E-10 62.0 8.1 89 280-375 6-96 (96)
62 3f1p_B ARYL hydrocarbon recept 97.8 2.1E-05 7.2E-10 66.5 5.5 100 161-265 5-117 (121)
63 4hi4_A Aerotaxis transducer AE 97.8 8.9E-05 3E-09 63.7 9.0 90 279-379 18-121 (121)
64 3vol_A Aerotaxis transducer AE 97.7 9.9E-05 3.4E-09 72.4 10.1 94 277-381 33-140 (233)
65 3cax_A Uncharacterized protein 97.5 0.00043 1.5E-08 73.0 11.8 97 279-381 252-349 (369)
66 2w0n_A Sensor protein DCUS; si 97.5 1.8E-05 6.1E-10 65.0 0.6 86 280-377 29-118 (118)
67 3a0r_A Sensor protein; four he 97.5 5.8E-05 2E-09 76.1 3.9 96 278-380 20-117 (349)
68 1mzu_A PPR; photoactive yellow 97.1 0.0014 4.8E-08 60.4 8.2 90 278-369 34-125 (129)
69 1nwz_A PYP, photoactive yellow 97.0 0.0014 4.7E-08 60.0 7.5 89 279-369 30-120 (125)
70 3f1p_A Endothelial PAS domain- 96.7 0.00047 1.6E-08 57.5 1.6 89 172-265 14-113 (117)
71 2jhe_A Transcription regulator 96.6 0.00066 2.2E-08 62.5 2.4 90 279-380 93-189 (190)
72 2kdk_A ARYL hydrocarbon recept 96.6 0.001 3.4E-08 55.5 2.8 40 172-216 18-57 (121)
73 1ll8_A PAS kinase; PAS domain, 95.7 0.0048 1.6E-07 51.3 2.8 40 171-215 12-52 (114)
74 2ykf_A Pdtas, probable sensor 94.3 0.0031 1E-07 65.0 0.0 106 279-390 183-298 (305)
75 1d06_A Nitrogen fixation regul 94.8 0.0088 3E-07 51.0 1.5 45 165-214 23-68 (130)
76 2vv6_A FIXL, sensor protein FI 94.6 0.0095 3.3E-07 49.9 1.3 39 171-214 7-45 (119)
77 3mfx_A Sensory BOX/ggdef famil 94.5 0.011 3.7E-07 52.7 1.4 45 167-216 16-61 (129)
78 2gj3_A Nitrogen fixation regul 93.9 0.022 7.5E-07 47.8 2.1 40 171-215 19-58 (120)
79 3t50_A Blue-light-activated hi 93.7 0.031 1.1E-06 46.3 2.7 46 165-215 4-53 (128)
80 3h9w_A Diguanylate cyclase wit 93.5 0.0098 3.3E-07 49.3 -0.8 90 175-269 12-112 (115)
81 1nwz_A PYP, photoactive yellow 93.4 0.027 9.3E-07 51.4 1.9 43 171-218 31-73 (125)
82 3fc7_A HTR-like protein, senso 93.4 0.021 7.2E-07 47.0 1.0 46 163-213 24-70 (125)
83 3olo_A Two-component sensor hi 93.3 0.028 9.7E-07 45.6 1.7 37 172-213 28-64 (118)
84 4eet_B Phototropin-2; LOV, blu 93.3 0.037 1.2E-06 44.3 2.3 41 171-216 11-54 (115)
85 3fg8_A Uncharacterized protein 93.2 0.017 5.7E-07 48.9 0.1 45 165-214 19-64 (118)
86 1mzu_A PPR; photoactive yellow 93.0 0.045 1.6E-06 50.3 2.7 43 171-218 36-78 (129)
87 2pr5_A Blue-light photorecepto 92.9 0.039 1.3E-06 47.1 2.0 44 166-214 7-54 (132)
88 2r78_A Sensor protein; sensory 92.9 0.041 1.4E-06 46.4 2.1 38 171-213 25-62 (117)
89 3mqq_A Transcriptional regulat 92.6 0.026 8.9E-07 47.1 0.5 41 168-213 13-53 (120)
90 3d72_A Vivid PAS protein VVD; 92.3 0.043 1.5E-06 47.2 1.4 35 175-214 46-80 (149)
91 3bwl_A Sensor protein; structu 92.2 0.058 2E-06 44.9 2.2 38 171-212 31-69 (126)
92 3mjq_A Uncharacterized protein 91.0 0.023 8E-07 46.5 -1.5 40 171-215 13-52 (126)
93 3a0s_A Sensor protein; PAS-fol 90.9 0.073 2.5E-06 40.4 1.3 34 172-210 7-40 (96)
94 1n9l_A PHOT-LOV1, putative blu 90.4 0.11 3.7E-06 43.3 2.0 35 175-214 14-48 (109)
95 1oj5_A Steroid receptor coacti 89.4 0.063 2.1E-06 49.7 -0.2 38 173-216 13-52 (132)
96 3b33_A Sensor protein; structu 89.3 0.071 2.4E-06 43.7 0.1 38 171-213 21-58 (115)
97 4hia_A LOV protein; PAS, HTH, 89.2 0.13 4.6E-06 45.5 1.8 41 171-216 21-64 (176)
98 2wkq_A NPH1-1, RAS-related C3 88.4 0.13 4.4E-06 51.4 1.2 46 166-216 19-68 (332)
99 2v0u_A NPH1-1, LOV2; kinase, t 88.1 0.17 5.9E-06 41.3 1.6 41 171-216 16-59 (146)
100 2w0n_A Sensor protein DCUS; si 87.7 0.17 5.8E-06 40.7 1.3 39 171-214 29-70 (118)
101 2ool_A Sensor protein; bacteri 87.7 0.16 5.6E-06 53.4 1.5 47 156-214 38-85 (337)
102 3luq_A Sensor protein; PAS, hi 87.5 0.14 4.6E-06 40.9 0.6 39 171-215 17-55 (114)
103 2ool_A Sensor protein; bacteri 87.0 0.49 1.7E-05 49.8 4.6 68 283-354 50-121 (337)
104 2z6d_A Phototropin-2; PAS-fold 86.8 0.23 7.8E-06 39.4 1.6 39 172-215 21-62 (130)
105 3ue6_A Aureochrome1; PAS/LOV d 86.6 0.23 7.8E-06 42.9 1.6 40 172-216 50-92 (166)
106 3lyx_A Sensory BOX/ggdef domai 86.4 0.18 6.1E-06 39.8 0.8 39 171-214 21-59 (124)
107 3p7n_A Sensor histidine kinase 85.7 0.33 1.1E-05 46.6 2.3 41 171-216 77-120 (258)
108 3icy_A Sensor protein; sensory 85.4 0.18 6.3E-06 40.6 0.3 40 172-216 19-60 (118)
109 1byw_A Protein (human ERG pota 84.1 0.39 1.3E-05 36.9 1.7 33 176-213 13-46 (110)
110 1v9y_A Heme PAS sensor protein 84.0 0.4 1.4E-05 41.0 1.9 40 171-215 54-93 (167)
111 4hi4_A Aerotaxis transducer AE 83.9 0.31 1.1E-05 41.2 1.1 37 171-212 19-67 (121)
112 3mxq_A Sensor protein; PSI2, M 82.6 0.23 7.8E-06 45.8 -0.3 38 171-213 36-73 (152)
113 3eeh_A Putative light and redo 82.3 0.28 9.5E-06 39.0 0.1 39 172-215 26-67 (125)
114 3nja_A Probable ggdef family p 82.1 0.23 7.8E-06 40.1 -0.4 40 172-216 22-63 (125)
115 2l0w_A Potassium voltage-gated 80.2 0.63 2.1E-05 37.6 1.6 37 172-213 34-74 (138)
116 2jhe_A Transcription regulator 79.6 0.69 2.4E-05 42.0 1.8 38 171-213 94-131 (190)
117 3s7o_A Bacteriophytochrome; bi 78.2 0.63 2.2E-05 49.2 1.3 46 156-213 48-94 (343)
118 2qkp_A Uncharacterized protein 78.0 1.2 4E-05 40.8 2.8 36 171-213 33-71 (151)
119 3vol_A Aerotaxis transducer AE 77.7 0.75 2.6E-05 44.6 1.5 37 171-212 36-84 (233)
120 3a0r_A Sensor protein; four he 77.5 0.42 1.4E-05 47.7 -0.3 42 167-213 17-59 (349)
121 4e04_A Bacteriophytochrome (li 75.9 0.81 2.8E-05 48.1 1.3 46 156-213 25-70 (327)
122 3sw1_A Sensory box protein; li 74.2 0.71 2.4E-05 39.7 0.3 41 171-216 39-82 (162)
123 3mr0_A Sensory box histidine k 72.6 1.5 5.3E-05 37.7 2.1 41 172-217 24-66 (142)
124 3k3c_A Protein RV1364C/MT1410; 71.0 0.72 2.4E-05 39.8 -0.5 38 171-215 31-69 (158)
125 3kx0_X Uncharacterized protein 68.8 1.1 3.8E-05 40.6 0.3 39 171-216 51-90 (185)
126 4eho_A Bacteriophytochrome, PA 67.8 2.7 9.4E-05 47.3 3.3 40 172-216 533-572 (635)
127 3clo_A Transcriptional regulat 63.4 33 0.0011 33.6 9.9 78 284-361 52-147 (258)
128 3zq5_A Phytochrome-like protei 63.2 1.4 4.8E-05 49.0 -0.3 46 156-213 25-71 (520)
129 3nhq_A Bacteriophytochrome; ph 53.0 4.4 0.00015 44.9 1.5 40 156-209 22-61 (505)
130 3cax_A Uncharacterized protein 45.9 9.9 0.00034 39.6 2.8 36 171-213 253-288 (369)
131 2ykf_A Pdtas, probable sensor 41.2 8.1 0.00028 39.4 0.0 41 167-213 179-223 (305)
132 4e04_A Bacteriophytochrome (li 27.2 34 0.0011 35.8 3.1 50 275-326 30-79 (327)
133 1wi9_A Protein C20ORF116 homol 24.4 28 0.00095 28.9 1.4 15 171-185 53-67 (72)
134 3s7o_A Bacteriophytochrome; bi 23.3 31 0.0011 36.4 1.9 42 284-326 61-102 (343)
No 1
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=100.00 E-value=2.1e-38 Score=331.58 Aligned_cols=215 Identities=17% Similarity=0.128 Sum_probs=176.4
Q ss_pred ccCCCCCCCCCCccCC-CCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCCC-------------C------
Q psy8265 160 WGSNPSRSPPASPILP-NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSPK-------------S------ 219 (630)
Q Consensus 160 ~gfll~~~~~~~Vls~-dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~k-------------~------ 219 (630)
+||++ |++. +|+|+||||+|+++|||+|+| |+|+|++||+||.+..+ .
T Consensus 36 dgF~~-------vvs~~~G~i~yvS~~~~~~Lg~~~~e-----l~g~s~~d~ihp~D~~~f~~ql~~~~lP~~~~~~~~~ 103 (317)
T 4dj3_A 36 DTFAA-------VFSFLSGRLVHISEQAALILNSKRGF-----LKSVHFVDLLAPQDVRAFYAHTAPTQLPFWNNWTQRA 103 (317)
T ss_dssp TEEEE-------EEETTTCBEEEECTTHHHHTTCCHHH-----HHTSBGGGGBCGGGHHHHHHHTCTTTCCCCC------
T ss_pred CCEEE-------EEEcCCcEEEEECCHHHHHcCCCHHH-----HcCCchhhhcChhhHHHHHHhhcccCCCCcCCCcccc
Confidence 89988 7766 599999999999999999999 48999999999974321 0
Q ss_pred -ccccCCCCCCeEEeeee-----eeEEEeeccccc--------CCCCCeEEEEEEeeCCCCCCccccccceeeEEeeccC
Q psy8265 220 -YYQSYNENGPSERLDIR-----GRIKILHGQNRK--------LEEPPLALFAICTPFGPPSLLEIPHKEVMFKSKHKLD 285 (630)
Q Consensus 220 -~~c~ld~rSfF~RMk~r-----GRlKvLhg~~rk--------se~p~lcLVAIarPL~~ps~~Ei~l~s~~FiTRhslD 285 (630)
..+...+++|||||+|. .+|+++|++++- .++...||||+++..++....++++...+|++||++|
T Consensus 104 ~~~~~~~~rsF~CRmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~~~~~~~~Fitrh~~d 183 (317)
T 4dj3_A 104 SQYECAPAKPFFCRICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPRIPVDKRIFTTTHTPG 183 (317)
T ss_dssp ----CCCCCCEEEEECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSCCCGGGCEEEEEECTT
T ss_pred cccCCCCCceEEEEEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCCcccCCCceEEEecCC
Confidence 01234578999999872 257788876531 1334568998866554433444556667999999999
Q ss_pred ceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCc---eeeEEEEEecCCcEEEEEEEEEEEEe
Q psy8265 286 LSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGAS---GMIAYRFQTNDGGWQWLQTSSRLVYK 362 (630)
Q Consensus 286 GkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs---~s~eYRfrtKdGswVWVeTsa~li~~ 362 (630)
|+|+|||+++..+|||.++||+|+++++++||||++.+.+.|+++++.|.. .+.+|||++|||+|+|++++++++++
T Consensus 184 G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwvet~~~~~~n 263 (317)
T 4dj3_A 184 CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILDSSWSSFVN 263 (317)
T ss_dssp SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEEEEEEEEEC
T ss_pred CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999987554 57899999999999999999999886
Q ss_pred --CCCceEEEEEEEecCchhhHHHHh
Q psy8265 363 --NSKPDFVISTHRPLMEEEGRDLLG 386 (630)
Q Consensus 363 --nGkpe~IVgt~rdISErE~~E~L~ 386 (630)
++++++|||+|+++++.+..+.++
T Consensus 264 p~s~~~e~II~~h~v~~~p~~~dvf~ 289 (317)
T 4dj3_A 264 PWSRKVSFIIGRHKVRTSPLNEDVFA 289 (317)
T ss_dssp SSSCCEEEEEEEEEECCCCSSSCTTC
T ss_pred CCCCcccEEEEEEEeccCCCCCCccc
Confidence 789999999999999887655444
No 2
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=100.00 E-value=1.1e-38 Score=334.16 Aligned_cols=225 Identities=17% Similarity=0.135 Sum_probs=181.7
Q ss_pred CCcccee----eee--ccCCCCCCCCCCccCC-CCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCCC----
Q psy8265 150 SEVPRQT----VLM--WGSNPSRSPPASPILP-NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSPK---- 218 (630)
Q Consensus 150 ~d~l~Q~----~L~--~gfll~~~~~~~Vls~-dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~k---- 218 (630)
+++|.|+ +|+ |||++ |++. +|+|+||||+|+++|||+|+| |+|+|++||+||.+..+
T Consensus 20 ~eel~~l~~e~lLqaldGF~~-------vvs~~~G~i~yvS~sv~~~Lg~~~~~-----l~g~s~~d~iHp~D~~~f~~q 87 (320)
T 4dj2_A 20 LEELEHITSEYTLRNQDTFSV-------AVSFLTGRIVYISEQAGVLLRCKRDV-----FRGARFSELLAPQDVGVFYGS 87 (320)
T ss_dssp HHHHHHHHHHHTTSCSSEEEE-------EEETTTCBEEEECTHHHHHHTSCSTT-----TTTSBGGGGBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEE-------EEECCCceEEEECcHHHHHhCcCHHH-----HcCCcHHHhcCHHHHHHHHHh
Confidence 4555555 333 88999 6665 699999999999999999999 59999999999963211
Q ss_pred ----C---c----------cccCCCCCCeEEeeee------eeEEEeeccccc-------CCCCCeEEEEEEeeCCCC-C
Q psy8265 219 ----S---Y----------YQSYNENGPSERLDIR------GRIKILHGQNRK-------LEEPPLALFAICTPFGPP-S 267 (630)
Q Consensus 219 ----~---~----------~c~ld~rSfF~RMk~r------GRlKvLhg~~rk-------se~p~lcLVAIarPL~~p-s 267 (630)
. + .....+++|||||+|. .+|+++|++++- ++.++.+||+++.|+.++ .
T Consensus 88 L~~~~lp~~~~~~~~~~~~~~~~~~rsF~CRmr~~l~k~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~ 167 (320)
T 4dj2_A 88 TTPSRLPTWGTGTSAGSGLKDFTQEKSVFCRIRGGPDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYE 167 (320)
T ss_dssp CCTTTCCBTTC-------------CCCEEEEECCC-------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSS
T ss_pred hcccCCCCcccCcccccccccCCCceeEEEEEEEeccCCCcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCccc
Confidence 0 0 0112468999999873 247777776531 223356777788898776 4
Q ss_pred CccccccceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhc-CCce-eeEEEEEe
Q psy8265 268 LLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKT-GASG-MIAYRFQT 345 (630)
Q Consensus 268 ~~Ei~l~s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkk-Gqs~-s~eYRfrt 345 (630)
+.+++.+..+|++||++||+|+|||+++..+|||.++||+|+++++|+||||++.+.+.|+++++. |+.. +.+|||++
T Consensus 168 ~~~i~~~~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~ 247 (320)
T 4dj2_A 168 APRIPPDKRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCA 247 (320)
T ss_dssp SSCCCGGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEEC
T ss_pred cccccCCCceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEc
Confidence 566778889999999999999999999999999999999999999999999999999999999984 5665 57999999
Q ss_pred cCCcEEEEEEEEEEEEe--CCCceEEEEEEEecCchhhHHHHh
Q psy8265 346 NDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGRDLLG 386 (630)
Q Consensus 346 KdGswVWVeTsa~li~~--nGkpe~IVgt~rdISErE~~E~L~ 386 (630)
|||+|+|++++++++++ ++++++|||+|++|++.+..+..+
T Consensus 248 kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~gp~~~dvf~ 290 (320)
T 4dj2_A 248 RNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLNEDVFT 290 (320)
T ss_dssp SSSCEEEEECEEEEEECTTTCSEEEEEEEEEESSCCSSCCCSS
T ss_pred cCCCEEEEEEEEEEEECCCCCCccEEEEEEEEccCCCCCCccc
Confidence 99999999999999875 789999999999999877654444
No 3
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=100.00 E-value=6.6e-38 Score=326.63 Aligned_cols=222 Identities=18% Similarity=0.168 Sum_probs=168.9
Q ss_pred CccceeeeeccCCCCCCCCCCccCCC-CcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCCC-----------
Q psy8265 151 EVPRQTVLMWGSNPSRSPPASPILPN-GHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSPK----------- 218 (630)
Q Consensus 151 d~l~Q~~L~~gfll~~~~~~~Vls~d-GkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~k----------- 218 (630)
+.+.|.+ +||++ |++.+ |+|+||||+|+++|||+|+| |+|+|++||+||.+..+
T Consensus 18 ~lll~a~--dgF~~-------vvs~~~G~i~yvS~s~~~~Lg~~~~e-----l~g~s~~d~iHp~D~~~~~~~L~~~~lp 83 (309)
T 3gdi_A 18 EYIVKNA--DMFAV-------AVSLVSGKILYISNQVASIFHCKKDA-----FSDAKFVEFLAPHDVSVFHSYTTPYKLP 83 (309)
T ss_dssp C----CT--TEEEE-------EECTTTCBEEEECTTTTTTC------------CCSBGGGGBCTTTHHHHHHHTCTTSSC
T ss_pred HHHHHhc--CCEEE-------EEECCCceEEEECCHHHHHcCCCHHH-----HcCCchhhccCHhHHHHHHHhccccCCC
Confidence 3444444 89999 77665 99999999999999999999 58999999999974321
Q ss_pred Cc-cc---------cCCCCCCeEEeeeee------eEEEeeccccc-------CCCCCeEEEEEEeeCCCCC-Ccccccc
Q psy8265 219 SY-YQ---------SYNENGPSERLDIRG------RIKILHGQNRK-------LEEPPLALFAICTPFGPPS-LLEIPHK 274 (630)
Q Consensus 219 ~~-~c---------~ld~rSfF~RMk~rG------RlKvLhg~~rk-------se~p~lcLVAIarPL~~ps-~~Ei~l~ 274 (630)
.. .| ...+++|||||+|.| +|+++|++++- +..++.|||++++|+.+.. ...++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~~~~p~~~~~ 163 (309)
T 3gdi_A 84 PWSVCSGLDSFTQECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSGYEAPRIPPE 163 (309)
T ss_dssp BCC--------------CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEEEEEEEECCCTTSSSCCCGG
T ss_pred CcccccCccccccccCCceeEEEEEEccccCCCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCCccCCCcCCC
Confidence 00 01 123689999999854 37888877641 2244789999999987542 2223344
Q ss_pred ceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcC-Ccee-eEEEEEecCCcEEE
Q psy8265 275 EVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTG-ASGM-IAYRFQTNDGGWQW 352 (630)
Q Consensus 275 s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkG-qs~s-~eYRfrtKdGswVW 352 (630)
..+|++||++||+|+|||+++..+|||.++||+|+++++|+||||++.+++.|+++++.| +..+ .+|||++|||+|+|
T Consensus 164 ~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 164 KRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp GCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred CceEEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 569999999999999999999999999999999999999999999999999999999854 4455 69999999999999
Q ss_pred EEEEEEEEEe--CCCceEEEEEEEecCchhhHHHHh
Q psy8265 353 LQTSSRLVYK--NSKPDFVISTHRPLMEEEGRDLLG 386 (630)
Q Consensus 353 VeTsa~li~~--nGkpe~IVgt~rdISErE~~E~L~ 386 (630)
++++|+++++ ++++++|||+|++|+..+..+..+
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~gp~~~dvf~ 279 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFA 279 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEECCSSSCTTS
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccCCCCCCccc
Confidence 9999999875 789999999999998877554433
No 4
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=100.00 E-value=3.7e-37 Score=328.13 Aligned_cols=258 Identities=21% Similarity=0.237 Sum_probs=191.3
Q ss_pred ccccCcccccCccCCCCCCcCCCCCCCcceecccccCCCCCCccceeeee--ccCCCCCCCCCCccCCC-CcEEeccccc
Q psy8265 110 SKSLNSKSLDGLSSNDSSPVPSNHLVTPKVEDIKSESFNYSEVPRQTVLM--WGSNPSRSPPASPILPN-GHINYPSQEI 186 (630)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~g~~s~~i~d~~~~~f~~~d~l~Q~~L~--~gfll~~~~~~~Vls~d-GkIlYVSEnV 186 (630)
..++++.+|....-+.-.. +.|..++..+...++++..++++.+++|+ +||++ |++.+ |+|+|||++|
T Consensus 46 ~~k~dk~~il~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~gfi~-------v~~~~~G~i~yvs~~~ 116 (387)
T 4f3l_B 46 SRKLDKLTVLRMAVQHMKT--LRGATNPYTEANYKPTFLSDDELKHLILRAADGFLF-------VVGCDRGKILFVSESV 116 (387)
T ss_dssp SSCCCHHHHHHHHHHHHHH--HHCC------CCSSCTTSCHHHHHHHHHHTCCSEEE-------EEETTTCBEEEECTTH
T ss_pred ccccCHHHHHHHHHHHHHH--hhcccccccccccCcccCCHHHHHHHHHhcCCCEEE-------EEecCCeEEEEEchhh
Confidence 3466677766544322111 11222222223333444435566666655 78888 77776 9999999999
Q ss_pred hhhcCCChhhhhhhccccCccccCCCCCCCCC-------C--------------------------ccccCCCCCCeEEe
Q psy8265 187 KKYNGDPLKSLAEMNTIGENKWKESPPVVSPK-------S--------------------------YYQSYNENGPSERL 233 (630)
Q Consensus 187 s~~LGysqeEL~q~~liGqSi~D~vHP~ls~k-------~--------------------------~~c~ld~rSfF~RM 233 (630)
+++|||+++|| +|++++||+||.+..+ . ..|...+++|||||
T Consensus 117 ~~~lG~~~~el-----~g~~~~~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~~~~~e~~~~~~~~~~g~~rsF~cRm 191 (387)
T 4f3l_B 117 FKILNYSQNDL-----IGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRM 191 (387)
T ss_dssp HHHHSCCHHHH-----TTSBGGGGBCGGGHHHHHHHHSCC--------------------------CCCGGGEEEEEEEE
T ss_pred HHHcCCCHHHH-----CCCcHHHhcCCCCHHHHHHHhcccccCccccccCcccCCccCCCCCCcccccccCCceeEEEee
Confidence 99999999995 8999999999974321 0 01223456888888
Q ss_pred eee----------------------eeEEEeecccccC-----------------C-CCCeEEEEEEeeCC----CCCCc
Q psy8265 234 DIR----------------------GRIKILHGQNRKL-----------------E-EPPLALFAICTPFG----PPSLL 269 (630)
Q Consensus 234 k~r----------------------GRlKvLhg~~rks-----------------e-~p~lcLVAIarPL~----~ps~~ 269 (630)
+|. ++|+++|++++.. + ....||||+|+++. ++...
T Consensus 192 r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~~~~~ 271 (387)
T 4f3l_B 192 KCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIGRLHSHMVPQPANG 271 (387)
T ss_dssp ECSCC-------------------CCSEEEEEEEEEEEC-------------------CCCEEEEEEEECCCSCCSCCCS
T ss_pred ecccCCcccccccccccccccccCCCceEEEEEEEEEecccccccccccccccccCCCcceEEEEEEecccCCCCCCccc
Confidence 762 2366777665310 1 12459999999954 34467
Q ss_pred cccccceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCC-ceeeEEEEEecCC
Q psy8265 270 EIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGA-SGMIAYRFQTNDG 348 (630)
Q Consensus 270 Ei~l~s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGq-s~s~eYRfrtKdG 348 (630)
|+..+..+|++||++||+|+|||+++..+|||.++||+|+++++++||||++.+.+.|+++++.+. ..+.+||+++|||
T Consensus 272 ei~~~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG 351 (387)
T 4f3l_B 272 EIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDG 351 (387)
T ss_dssp SSCBCCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTS
T ss_pred ccccCCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCC
Confidence 888889999999999999999999999999999999999999999999999999999999987654 4678999999999
Q ss_pred cEEEEEEEEEEEEe--CCCceEEEEEEEecCchhh
Q psy8265 349 GWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 349 swVWVeTsa~li~~--nGkpe~IVgt~rdISErE~ 381 (630)
+|+||+++++++++ +|++++|||+++|||+++.
T Consensus 352 ~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 352 SFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp CEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred CEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 99999999999986 6899999999999999874
No 5
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=100.00 E-value=1.1e-34 Score=305.70 Aligned_cols=261 Identities=24% Similarity=0.354 Sum_probs=195.6
Q ss_pred ccccCcccccCccCCCCCCc--CCCCCCCcce-ecccccCCCCCCccceeeee--ccCCCCCCCCCCccCCCCcEEeccc
Q psy8265 110 SKSLNSKSLDGLSSNDSSPV--PSNHLVTPKV-EDIKSESFNYSEVPRQTVLM--WGSNPSRSPPASPILPNGHINYPSQ 184 (630)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~--~~~g~~s~~i-~d~~~~~f~~~d~l~Q~~L~--~gfll~~~~~~~Vls~dGkIlYVSE 184 (630)
.+++++.+|....-+.-... ...+..+..+ .+++ ++|..++++.+++|+ +||++ |++.+|+|+|||+
T Consensus 42 ~~~~dk~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~a~~~~i~-------v~~~~G~i~yvs~ 113 (361)
T 4f3l_A 42 ARKMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWK-PTFLSNEEFTQLMLEALDGFFL-------AIMTDGSIIYVSE 113 (361)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHTSCSCGGGTSCCS-CTTSCHHHHHHHHHHHTTEEEE-------EEETTSBEEEECT
T ss_pred CCCcCHHHHHHHHHHHHHHHHhhcccccccccccccC-cccccHHHHHHHHHHhcCceEE-------EEcCCccEEEEec
Confidence 45777777776553332210 0001111222 2444 344435666766665 77887 8899999999999
Q ss_pred cchhhcCCChhhhhhhccccCccccCCCCCCCCC--------------------------CccccCC-------CCCCeE
Q psy8265 185 EIKKYNGDPLKSLAEMNTIGENKWKESPPVVSPK--------------------------SYYQSYN-------ENGPSE 231 (630)
Q Consensus 185 nVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~k--------------------------~~~c~ld-------~rSfF~ 231 (630)
++.++|||+++|| +|+++++++||.+..+ .|+|.+. ..+.|.
T Consensus 114 ~~~~~lGy~~~el-----~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~cr~~~~~~~~~~~~~y~ 188 (361)
T 4f3l_A 114 SVTSLLEHLPSDL-----VDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKNQLEFCCHMLRGTIDPKEPSTYE 188 (361)
T ss_dssp THHHHHCCCHHHH-----TTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGGGEEEEEEEEECCCSCSSSCCCEE
T ss_pred hhhhhcCCCHHHh-----cCCcHHHhcCHHHHHHHHHHhccCCCCCCCCCcccccccCceeEEEEEeccCCCCCCCCceE
Confidence 9999999999995 8999999999974321 1122210 123344
Q ss_pred EeeeeeeEEEeeccccc---------------CCCCCeEEEEEEeeCCCCCCcc---ccccceeeEEeeccCceeeeecc
Q psy8265 232 RLDIRGRIKILHGQNRK---------------LEEPPLALFAICTPFGPPSLLE---IPHKEVMFKSKHKLDLSLVSMDQ 293 (630)
Q Consensus 232 RMk~rGRlKvLhg~~rk---------------se~p~lcLVAIarPL~~ps~~E---i~l~s~~FiTRhslDGkftyVDp 293 (630)
.+++.|+++.++..... ......||||+++++.+....| +.....+|+++|++||+|+|||+
T Consensus 189 ~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~e~~~i~~~~~~f~~~~~~dg~~~~vn~ 268 (361)
T 4f3l_A 189 YVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDH 268 (361)
T ss_dssp EEEEEEEEEECC------------------------CEEEEEEEEESSCCSSEEECSCSSSCCEEEEEECTTSBEEEECT
T ss_pred EEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCcccccccccCCcceeEEEEcCCceEEEECC
Confidence 45566666665422110 1134689999999998876655 44567899999999999999999
Q ss_pred ccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEEEEEe--CCCceEEEE
Q psy8265 294 RGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK--NSKPDFVIS 371 (630)
Q Consensus 294 rv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~li~~--nGkpe~IVg 371 (630)
++..++||.++||+|+++++|+||||++.+.+.|++++++|+....+||+++|+|+|+|+++++.++++ +|++.+|||
T Consensus 269 ~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~ 348 (361)
T 4f3l_A 269 RAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVC 348 (361)
T ss_dssp TSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEE
T ss_pred hhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEE
Confidence 999999999999999999999999999999999999999998888899999999999999999999987 689999999
Q ss_pred EEEecCchhhHH
Q psy8265 372 THRPLMEEEGRD 383 (630)
Q Consensus 372 t~rdISErE~~E 383 (630)
+++|||+++..+
T Consensus 349 ~~~dITe~~~~~ 360 (361)
T 4f3l_A 349 THTVVSYAEVRA 360 (361)
T ss_dssp EEEECCHHHHHH
T ss_pred EEEECChhHhhc
Confidence 999999998654
No 6
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=100.00 E-value=4.1e-34 Score=301.53 Aligned_cols=216 Identities=19% Similarity=0.197 Sum_probs=172.1
Q ss_pred eccCCCCCCCCCCccC-CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCCC---------Cc-----ccc
Q psy8265 159 MWGSNPSRSPPASPIL-PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSPK---------SY-----YQS 223 (630)
Q Consensus 159 ~~gfll~~~~~~~Vls-~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~k---------~~-----~c~ 223 (630)
+|||++ |++ .+|+|+|||+++.++|||+++| |+|++++||+||.+..+ .. .+.
T Consensus 2 ~dgF~~-------vv~~~~G~i~yvS~~~~~~LGy~~~e-----l~G~s~~d~ihp~D~~~f~~~L~~gl~~~~~~~~~~ 69 (339)
T 3rty_A 2 EDSFCC-------VISMHDGIVLYTTPSITDVLGYPRDM-----WLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVP 69 (339)
T ss_dssp CSCEEE-------EEETTTCBEEEECTTHHHHHCCCTTS-----STTSBGGGGBCHHHHHHHHHHHHTTSCCC-------
T ss_pred CcEEEE-------EEECCCcEEEEEChHHHHHcCCCHHH-----HCCCcHHHhcCHHHHHHHHHHHhcCCCCCccccCCC
Confidence 478888 676 8999999999999999999999 59999999999974322 00 012
Q ss_pred CCCCCCeEEeeeeee---------------EEEeec--cccc---C---------CCCCeEEEEEEeeCCCCCCc--cc-
Q psy8265 224 YNENGPSERLDIRGR---------------IKILHG--QNRK---L---------EEPPLALFAICTPFGPPSLL--EI- 271 (630)
Q Consensus 224 ld~rSfF~RMk~rGR---------------lKvLhg--~~rk---s---------e~p~lcLVAIarPL~~ps~~--Ei- 271 (630)
..+++|||||.++.+ ++..+. ..+. . ....+|||++|+|++++... |+
T Consensus 70 ~~~rsffcR~~rr~~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e~~ 149 (339)
T 3rty_A 70 KDAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEIL 149 (339)
T ss_dssp ---CCEEEEEEECCC-------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTTBBC
T ss_pred CCCceEEEEEEeccCCCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccchhh
Confidence 335799999854211 221110 0010 0 12457899999999876433 32
Q ss_pred cccceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCc-----eeeEEEEEec
Q psy8265 272 PHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGAS-----GMIAYRFQTN 346 (630)
Q Consensus 272 ~l~s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs-----~s~eYRfrtK 346 (630)
..+..+|++||++||+|+|||+++..+|||.++||+|+++++|+||||++.+.+.|++++++|+. .+.+||+++|
T Consensus 150 ~~~~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~k 229 (339)
T 3rty_A 150 SQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQ 229 (339)
T ss_dssp CSSCCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECT
T ss_pred ccCCceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEcc
Confidence 34678999999999999999999999999999999999999999999999999999999988875 3679999999
Q ss_pred CCcEEEEEEEEEEEEe--CCCceEEEEEEEecCchhhHHHHh
Q psy8265 347 DGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEGRDLLG 386 (630)
Q Consensus 347 dGswVWVeTsa~li~~--nGkpe~IVgt~rdISErE~~E~L~ 386 (630)
||+|+|++++++++++ ++++++|||+|++|++.+..+..+
T Consensus 230 dG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~~dvf~ 271 (339)
T 3rty_A 230 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFE 271 (339)
T ss_dssp TSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSSSCSSS
T ss_pred CCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCCCCccc
Confidence 9999999999999986 688999999999999988766555
No 7
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=99.84 E-value=1.2e-21 Score=181.10 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=93.8
Q ss_pred cceeeEEeeccCceeeeeccccccccCCCh--hhhccCcccceeccccHH--HHHHHHHHHHhcCCceeeEEEEEecCCc
Q psy8265 274 KEVMFKSKHKLDLSLVSMDQRGKMLLGYSD--TELANMGGYDLVHYDDLA--YVASAHQELLKTGASGMIAYRFQTNDGG 349 (630)
Q Consensus 274 ~s~~FiTRhslDGkftyVDprv~~LLGYsp--EELlG~S~ydlIHPDDl~--~V~eah~~lLkkGqs~s~eYRfrtKdGs 349 (630)
...+|++||++||||++||.++. ..+|.+ +||+|+++|+|+|++|++ .+++.|++++.+|++.+..|||+.|+|+
T Consensus 5 ~~e~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~ 83 (132)
T 1oj5_A 5 GVESFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGT 83 (132)
T ss_dssp -CCEEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSC
T ss_pred CceeeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCc
Confidence 45799999999999999999865 356666 999999999999999977 9999999999999999999999999999
Q ss_pred EEEEEEEEEEEEe--CCCceEEEEEEEecCchhh
Q psy8265 350 WQWLQTSSRLVYK--NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 350 wVWVeTsa~li~~--nGkpe~IVgt~rdISErE~ 381 (630)
|||++++++++++ ++++++|||+|.++.+..+
T Consensus 84 ~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~~~~ 117 (132)
T 1oj5_A 84 MLSAHTRCKLCYPQSPDMQPFIMGIHIIDREHSG 117 (132)
T ss_dssp EEEEEEEEEEECC----CCCEEEEEEEEECC---
T ss_pred EEEEEEEEEEecCCCCCCCCEEEEEEEEEcCCCC
Confidence 9999999999875 5789999999999998654
No 8
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.79 E-value=4.3e-19 Score=150.98 Aligned_cols=109 Identities=28% Similarity=0.494 Sum_probs=101.9
Q ss_pred ccceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEE
Q psy8265 273 HKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQW 352 (630)
Q Consensus 273 l~s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVW 352 (630)
+....|+.++++||+++++|+++..++||.++|++|+++.+++||+|.+.+.+.+.+++..|+....+||+++|+|+++|
T Consensus 6 l~~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w 85 (117)
T 3f1p_A 6 LDSKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVW 85 (117)
T ss_dssp TGGGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEE
T ss_pred cCCccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEE
Confidence 45678999999999999999999999999999999999999999999999999999999888887889999999999999
Q ss_pred EEEEEEEEEe--CCCceEEEEEEEecCchhh
Q psy8265 353 LQTSSRLVYK--NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 353 VeTsa~li~~--nGkpe~IVgt~rdISErE~ 381 (630)
++.++.++.+ +|++.+++|+.+|||++|.
T Consensus 86 ~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 86 LETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 9999999885 5788999999999999874
No 9
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.77 E-value=2.5e-18 Score=147.39 Aligned_cols=108 Identities=21% Similarity=0.427 Sum_probs=97.5
Q ss_pred cceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHh-cCCceeeEEEEEecCCcEEE
Q psy8265 274 KEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLK-TGASGMIAYRFQTNDGGWQW 352 (630)
Q Consensus 274 ~s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLk-kGqs~s~eYRfrtKdGswVW 352 (630)
....++.+++.||+|+|+|+++..++||.++|++|+++.+++||+|.+.+.+.+.++++ .++....+||+++|||+++|
T Consensus 10 ~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w 89 (121)
T 3f1p_B 10 QPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLW 89 (121)
T ss_dssp CCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEECTTSCEEE
T ss_pred CCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCCEEE
Confidence 35678899999999999999999999999999999999999999999999999988885 45567889999999999999
Q ss_pred EEEEEEEEEe--CCCceEEEEEEEecCchhh
Q psy8265 353 LQTSSRLVYK--NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 353 VeTsa~li~~--nGkpe~IVgt~rdISErE~ 381 (630)
+++++.++.+ +|++.+|+|+.+|||+++.
T Consensus 90 ~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 90 MRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred EEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 9999999875 5788999999999999875
No 10
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.68 E-value=4.2e-16 Score=132.45 Aligned_cols=114 Identities=22% Similarity=0.356 Sum_probs=100.5
Q ss_pred CCCccccccceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcC-CceeeEEEEE
Q psy8265 266 PSLLEIPHKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTG-ASGMIAYRFQ 344 (630)
Q Consensus 266 ps~~Ei~l~s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkG-qs~s~eYRfr 344 (630)
++..|+......++..++.||+|+++|+++..++||.++|++|+++.+++||+|.+.+.+.+.+.+..+ .....++|++
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~ 82 (121)
T 2kdk_A 3 MNSGEINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFR 82 (121)
T ss_dssp -CTTCCCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEE
T ss_pred CcccccccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEE
Confidence 445566667788999999999999999999999999999999999999999999999988888877754 4467899999
Q ss_pred ecCCcEEEEEEEEEEEEe--CCCceEEEEEEEecCch
Q psy8265 345 TNDGGWQWLQTSSRLVYK--NSKPDFVISTHRPLMEE 379 (630)
Q Consensus 345 tKdGswVWVeTsa~li~~--nGkpe~IVgt~rdISEr 379 (630)
+|||+++|++.++.++.+ ++++.+++|+++||++.
T Consensus 83 ~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~ 119 (121)
T 2kdk_A 83 AKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGH 119 (121)
T ss_dssp CSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSC
T ss_pred EcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEecccc
Confidence 999999999999999875 35788999999999985
No 11
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.58 E-value=8.1e-15 Score=124.36 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=90.8
Q ss_pred cCceeeeeccccccccCCChhhhccC-cccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEEEEEe
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTELANM-GGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK 362 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEELlG~-S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~li~~ 362 (630)
.+|+++|+|+++..++||.++|+++. .|.+++||+|++.+.+.+.+.+..|.....+||+++++|+++|++.++.++++
T Consensus 12 ~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~d 91 (115)
T 3h9w_A 12 QTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYVWIRDVVHVVRD 91 (115)
T ss_dssp TTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred CCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCEEEEEEEEEEEEC
Confidence 57899999999999999999999985 36789999999999999999998888788999999999999999999999886
Q ss_pred -CCCceEEEEEEEecCchhhHH
Q psy8265 363 -NSKPDFVISTHRPLMEEEGRD 383 (630)
Q Consensus 363 -nGkpe~IVgt~rdISErE~~E 383 (630)
+|++..++|+..|||++|..|
T Consensus 92 ~~G~~~~~~G~~~Dit~~k~~~ 113 (115)
T 3h9w_A 92 DSGEVEALIGFMFDISLEHHHH 113 (115)
T ss_dssp TTSCEEEEEEEEEECGGGGC--
T ss_pred CCCCEEEEEEEEeccCcccccc
Confidence 799999999999999987543
No 12
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.57 E-value=1.4e-14 Score=128.90 Aligned_cols=115 Identities=20% Similarity=0.352 Sum_probs=98.8
Q ss_pred EEeeccCceeeeeccccccccCCChhhhcc--CcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELAN--MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTS 356 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG--~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTs 356 (630)
+...++++.++++|+++..++||.++++.+ ..+.+++||+|.+.+.+.+...+..+.....+||+++++|.++|+...
T Consensus 22 ~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~e~r~~~~~G~~~w~~~~ 101 (142)
T 3mr0_A 22 LWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWIQSR 101 (142)
T ss_dssp EEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEEEEEEECCCCCEEEEEEE
Confidence 344577888999999999999999999887 358899999999999999999998888888999999999999999999
Q ss_pred EEEEEe-CCCceEEEEEEEecCchh-hHHHHhhhccccc
Q psy8265 357 SRLVYK-NSKPDFVISTHRPLMEEE-GRDLLGKRTMDFK 393 (630)
Q Consensus 357 a~li~~-nGkpe~IVgt~rdISErE-~~E~L~~r~~elk 393 (630)
+.++++ +|++..++|+.+|||+++ .++.|++.+++|+
T Consensus 102 ~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~l~ 140 (142)
T 3mr0_A 102 GQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELR 140 (142)
T ss_dssp EEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHHHh
Confidence 999886 789999999999999976 5667877776653
No 13
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.56 E-value=1.7e-14 Score=138.89 Aligned_cols=199 Identities=11% Similarity=-0.039 Sum_probs=142.8
Q ss_pred ccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCCCC----ccccCCCCCC---eEEeeeeeeEEEeec
Q psy8265 172 PILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSPKS----YYQSYNENGP---SERLDIRGRIKILHG 244 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~k~----~~c~ld~rSf---F~RMk~rGRlKvLhg 244 (630)
+++.+|+|+|+++...+++||+.+|| +|+++.++.++...... +........+ +......|...++..
T Consensus 4 i~D~~g~i~~~N~a~~~l~Gy~~~el-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 78 (227)
T 3ewk_A 4 ITDLQGRILYANDNFCAVSRYGREEL-----VGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEETTCBEEEECHHHHHHTTCCHHHH-----TTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred EECCCCcEEehHHHHHHHHCcCHHHH-----cCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee
Confidence 66899999999999999999999995 89988776554322110 0111111111 111223455433322
Q ss_pred ccc--c-CCCCCeEEEEEEeeCCCCCCccccc--------cceeeEEeeccCceeeeeccccccccCCChhhhccCcccc
Q psy8265 245 QNR--K-LEEPPLALFAICTPFGPPSLLEIPH--------KEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYD 313 (630)
Q Consensus 245 ~~r--k-se~p~lcLVAIarPL~~ps~~Ei~l--------~s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~yd 313 (630)
... . ......+++++++.+......|..+ .....+...+.+|+|+++|++++.++||+++|++|+++..
T Consensus 79 ~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~ 158 (227)
T 3ewk_A 79 TIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSI 158 (227)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGG
T ss_pred EEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHHHHHHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChhh
Confidence 111 1 1123347889999998765433221 2233455568999999999999999999999999999999
Q ss_pred eeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCc------EEEEEEEEEEEEe-CCCceEEEEEEEe
Q psy8265 314 LVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGG------WQWLQTSSRLVYK-NSKPDFVISTHRP 375 (630)
Q Consensus 314 lIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGs------wVWVeTsa~li~~-nGkpe~IVgt~rd 375 (630)
+.++++.......+.+.+..|+....+++.++|+|. .+|++.+..++.+ +|++..+|++.+|
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 159 LDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp GBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred ccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCEEEEEEEecC
Confidence 999987777777778888888888888999999997 8999999999886 7888999998876
No 14
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.48 E-value=9.7e-14 Score=122.58 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=78.9
Q ss_pred eeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEE
Q psy8265 276 VMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQT 355 (630)
Q Consensus 276 ~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeT 355 (630)
..|+...+.||+|+|||+++..++||+++||+|+++++++||+|.+.+.+.+. ..+.....+||+++|||+++|++.
T Consensus 9 ~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~kdG~~~wve~ 85 (111)
T 2vlg_A 9 TDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKKDHTIVWVEA 85 (111)
T ss_dssp CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcCCCCEEEEEE
Confidence 45677788999999999999999999999999999999999999998876542 234445679999999999999999
Q ss_pred EEEEEEe--CCCceEEEEEEEecCc
Q psy8265 356 SSRLVYK--NSKPDFVISTHRPLME 378 (630)
Q Consensus 356 sa~li~~--nGkpe~IVgt~rdISE 378 (630)
++.++.+ .++...++|-.+.+.+
T Consensus 86 ~~~~v~~~~~~~~r~~~~~~~~~~~ 110 (111)
T 2vlg_A 86 AVEIVTTRAERTEREIILKMKVLEE 110 (111)
T ss_dssp EEEEC-------CCCEEEEEEEC--
T ss_pred EEEEEecccCCceEEEEEEEEEecc
Confidence 9998875 4555567776666543
No 15
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.41 E-value=9.7e-13 Score=109.67 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=91.9
Q ss_pred EEeeccCceeeeeccccccccCCChhhhcc--CcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELAN--MGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTS 356 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG--~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTs 356 (630)
+...+.++.++++|+++..++||.+++++| ..+.+++||+|...+.+.+..+++.+.....++|+++++|.++|+...
T Consensus 20 i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~ 99 (125)
T 3nja_A 20 SWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLER 99 (125)
T ss_dssp EEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEEe
Confidence 445678899999999999999999999999 678999999999999999999998888888999999999999999999
Q ss_pred EEEEEe-CCCceEEEEEEEecCchh
Q psy8265 357 SRLVYK-NSKPDFVISTHRPLMEEE 380 (630)
Q Consensus 357 a~li~~-nGkpe~IVgt~rdISErE 380 (630)
+.++.+ +|++..++++.+|||+++
T Consensus 100 ~~~~~~~~g~~~~~~g~~~DITe~k 124 (125)
T 3nja_A 100 NHIQRQASGQVDHLWGTVIDMTEHK 124 (125)
T ss_dssp EEEEECTTSCEEEEEEEEEECCC--
T ss_pred eEEEECCCCCEEEEEEEEEeccccc
Confidence 998876 788899999999999976
No 16
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.40 E-value=1.7e-12 Score=108.01 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=89.7
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCc--ccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMG--GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTS 356 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S--~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTs 356 (630)
+...+.++.++++|+++..++||.++|+++.. +.+++||+|.+.+.+.+.+++..|.....+||+++++|+++|+...
T Consensus 17 i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~~~w~~~~ 96 (118)
T 3icy_A 17 IYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVYRIVTPEGKLHWIEDH 96 (118)
T ss_dssp CEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEEEEEECTTCCEEEEEEE
T ss_pred EEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEEE
Confidence 34567889999999999999999999998874 6899999999999999999988888888999999999999999999
Q ss_pred EEEEEe-CCCceEEEEEEEecC
Q psy8265 357 SRLVYK-NSKPDFVISTHRPLM 377 (630)
Q Consensus 357 a~li~~-nGkpe~IVgt~rdIS 377 (630)
+.++++ +|++..++|+.+|||
T Consensus 97 ~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 97 MRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEECTTSCEEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEecC
Confidence 999886 688889999999997
No 17
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.37 E-value=3.1e-12 Score=109.69 Aligned_cols=103 Identities=14% Similarity=0.042 Sum_probs=88.7
Q ss_pred eEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEE
Q psy8265 278 FKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357 (630)
Q Consensus 278 FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa 357 (630)
.+...+.+|+|+++|+++..++||.++|++|+++..+.++++.......+...+..|.....++++++|||+.+|++...
T Consensus 17 ~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~ 96 (120)
T 2gj3_A 17 AISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTV 96 (120)
T ss_dssp EEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred eEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEEEEcCCCCEEEEEEEE
Confidence 34556889999999999999999999999999999998887765555566666777777778899999999999999999
Q ss_pred EEEEe-CCCceEEEEEEEecCchh
Q psy8265 358 RLVYK-NSKPDFVISTHRPLMEEE 380 (630)
Q Consensus 358 ~li~~-nGkpe~IVgt~rdISErE 380 (630)
.++.+ +|++.+++++.+|||+++
T Consensus 97 ~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 97 APVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEEECTTSCEEEEEEEEEECCSCC
T ss_pred EEEECCCCCEEEEEEEeccCcccC
Confidence 98876 788899999999999874
No 18
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.37 E-value=2.9e-12 Score=111.69 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=90.0
Q ss_pred eeccCc---eeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEE
Q psy8265 281 KHKLDL---SLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357 (630)
Q Consensus 281 RhslDG---kftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa 357 (630)
..+.+| +|+++|+++..++||+++|++|+++..+.++++.....+.+...+..|.....++++++|||+.+|++...
T Consensus 14 ~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~ 93 (132)
T 2pr5_A 14 ITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNI 93 (132)
T ss_dssp EECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEecCCCeeeeEEEE
Confidence 345544 99999999999999999999999998887877655555566666777777788899999999999999999
Q ss_pred EEEEeCCCceEEEEEEEecCchh-hHHHHhhhcccc
Q psy8265 358 RLVYKNSKPDFVISTHRPLMEEE-GRDLLGKRTMDF 392 (630)
Q Consensus 358 ~li~~nGkpe~IVgt~rdISErE-~~E~L~~r~~el 392 (630)
.++.+++ +.+++++.+|||+++ .++.|++.+.+|
T Consensus 94 ~~~~~~~-~~~~~~~~~DITe~k~~e~~l~~~~~~l 128 (132)
T 2pr5_A 94 DPMEIED-KTYFVGIQNDITKQKEYEKLLEDSLTEI 128 (132)
T ss_dssp EEEEETT-EEEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EeccCCC-eeEEEEEEEeCcHHHHHHHHHHHHHHHH
Confidence 9887655 788999999999976 455566655554
No 19
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.37 E-value=3e-12 Score=113.46 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=99.0
Q ss_pred eecc---CceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEE
Q psy8265 281 KHKL---DLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357 (630)
Q Consensus 281 Rhsl---DGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa 357 (630)
..+. ||+|+++|+++..++||.++|++|+++..++++++...+...+...+..|.....++++++++|..+|+...+
T Consensus 50 ~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~ 129 (166)
T 3ue6_A 50 ITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFV 129 (166)
T ss_dssp EEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEE
Confidence 3456 8999999999999999999999999999999999877777777888888888888999999999999999999
Q ss_pred EEEEe-CCCceEEEEEEEecCchhhHHHHhhhccccc
Q psy8265 358 RLVYK-NSKPDFVISTHRPLMEEEGRDLLGKRTMDFK 393 (630)
Q Consensus 358 ~li~~-nGkpe~IVgt~rdISErE~~E~L~~r~~elk 393 (630)
.++.+ +|++.+++++.+|||+++..+.+.+.+.+++
T Consensus 130 ~~i~~~~g~~~~~~~~~~DITe~k~~~~~~e~~~~y~ 166 (166)
T 3ue6_A 130 AGLRDSKGNIVNYVGVQSKVSEDYAKLLVNEQNIEYK 166 (166)
T ss_dssp EEEECTTSCEEEEEEECCBCCHHHHHHHHHHHGGGC-
T ss_pred EeeeCCCCCEEEEEEEEEechHHHHHHHHHhhhhccC
Confidence 99886 7888999999999999998777776666653
No 20
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.30 E-value=9.9e-12 Score=105.98 Aligned_cols=95 Identities=13% Similarity=0.081 Sum_probs=82.6
Q ss_pred cCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEEEEEe-
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK- 362 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~li~~- 362 (630)
.||+|+++|+++..++||.++|++|+++..+.++++.....+.+.+.++.|+....+++.++|||+.+|++....++.+
T Consensus 14 ~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~pi~d~ 93 (109)
T 1n9l_A 14 PDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTP 93 (109)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECT
T ss_pred CCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEEEEEEEEEEECC
Confidence 5799999999999999999999999998877777754444455666677788888899999999999999999999886
Q ss_pred CCCceEEEEEEEecCc
Q psy8265 363 NSKPDFVISTHRPLME 378 (630)
Q Consensus 363 nGkpe~IVgt~rdISE 378 (630)
+|++..++++.+|||+
T Consensus 94 ~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 94 DGRVSKFVGVQVDVTS 109 (109)
T ss_dssp TSCEEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEeCCC
Confidence 7889999999999996
No 21
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.30 E-value=1.7e-11 Score=100.63 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=89.1
Q ss_pred eecc---CceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEE
Q psy8265 281 KHKL---DLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357 (630)
Q Consensus 281 Rhsl---DGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa 357 (630)
..+. +|+++++|+++..++||.++|++|+++..++|+++...+...+.+.+..+.....++++++++|..+|++..+
T Consensus 12 ~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 91 (115)
T 4eet_B 12 ITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHL 91 (115)
T ss_dssp EECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEE
T ss_pred EEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCCEEEEEEEE
Confidence 3466 8999999999999999999999999999999998877777777888888887788999999999999999999
Q ss_pred EEEEe-CCCceEEEEEEEecCch
Q psy8265 358 RLVYK-NSKPDFVISTHRPLMEE 379 (630)
Q Consensus 358 ~li~~-nGkpe~IVgt~rdISEr 379 (630)
.++.+ +|++.+++++.+|||++
T Consensus 92 ~~~~~~~g~~~~~~~~~~DITer 114 (115)
T 4eet_B 92 QPVRDQKGELQYFIGVQLDGSDH 114 (115)
T ss_dssp EEEECTTSCEEEEEEEEEECSCC
T ss_pred EEEECCCCCEEEEEEEEEeeccc
Confidence 99876 78888999999999986
No 22
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.26 E-value=2.6e-11 Score=102.83 Aligned_cols=101 Identities=15% Similarity=0.018 Sum_probs=90.3
Q ss_pred eecc---CceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEE
Q psy8265 281 KHKL---DLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357 (630)
Q Consensus 281 Rhsl---DGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa 357 (630)
..+. ||+++++|+++..++||.++|++|+++.+++++++...+...+...+..+.....++++++++|..+|+...+
T Consensus 12 ~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~ 91 (128)
T 3t50_A 12 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHI 91 (128)
T ss_dssp EECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEE
T ss_pred EecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCCCEEEEEEEE
Confidence 3456 8999999999999999999999999999999998877777777888888887888999999999999999999
Q ss_pred EEEEe-CCCceEEEEEEEecCchhh
Q psy8265 358 RLVYK-NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 358 ~li~~-nGkpe~IVgt~rdISErE~ 381 (630)
.++.+ +|++.+++++.+|||+++.
T Consensus 92 ~~i~~~~g~~~~~~~~~~DITe~k~ 116 (128)
T 3t50_A 92 SPVHNANGRLQHFVSSQLDVTLELV 116 (128)
T ss_dssp EEEECTTSCEEEEEEEEEECHHHHC
T ss_pred EEEECCCCCEEEEEEEEEEcchhhh
Confidence 99876 7888899999999999764
No 23
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.25 E-value=2.1e-11 Score=110.45 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=100.5
Q ss_pred eccC---ceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEE
Q psy8265 282 HKLD---LSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSR 358 (630)
Q Consensus 282 hslD---GkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~ 358 (630)
.+.+ |+|+++|+++..++||.++|++|+++..++|+++...+...+...+..|.....++++++++|..+|+...+.
T Consensus 23 ~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~ 102 (176)
T 4hia_A 23 VDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLH 102 (176)
T ss_dssp EETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEE
T ss_pred EecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEEEEcCCCCEEEEEEEEE
Confidence 4556 9999999999999999999999999999999998888888888888888888889999999999999999999
Q ss_pred EEEe-CCCceEEEEEEEecCchhhHHHHhhhcccccccccc--cCcccccccC
Q psy8265 359 LVYK-NSKPDFVISTHRPLMEEEGRDLLGKRTMDFKVSYLD--AGLNNSYFSD 408 (630)
Q Consensus 359 li~~-nGkpe~IVgt~rdISErE~~E~L~~r~~elk~sf~d--~gl~~~~~~~ 408 (630)
++.+ +|++.+++++.+|||+++..+.-. .....| +||.|+.+..
T Consensus 103 pi~~~~g~~~~~~~~~~DITe~k~~e~~~------~~a~~d~LtgL~NR~~~~ 149 (176)
T 4hia_A 103 PVGGRPDAPDYFLGSQFELGRSGNSEEAA------AAGHAGALTGELARIGTV 149 (176)
T ss_dssp EESSBTTBCSEEEEEEEEESSSGGGHHHH------HHHHHHHHHHHHHHTTSS
T ss_pred EeeCCCCCeEEEEEEEEECcHhhHHHHHH------HHhhhhHHhhhhhhhhhH
Confidence 9875 788899999999999976432211 122233 3888887744
No 24
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.23 E-value=1.5e-11 Score=104.86 Aligned_cols=99 Identities=10% Similarity=0.060 Sum_probs=79.5
Q ss_pred ccCceeeeeccccccccCCChhhhccCcccceecccc-HHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEEEEE
Q psy8265 283 KLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDD-LAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY 361 (630)
Q Consensus 283 slDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDD-l~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~li~ 361 (630)
+.+|+|+++|+++..++||.++|++|+++..++++++ ...+...+...+..|.....+++++++||+.+|++..+.++.
T Consensus 19 ~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~ 98 (120)
T 3mqq_A 19 SRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRALD 98 (120)
T ss_dssp EETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEEECTTSCEEEEEEEEEESS
T ss_pred ecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEEEeCCCCEEEEEEEEEECC
Confidence 5689999999999999999999999999887665543 355666666666666667789999999999999999998873
Q ss_pred eCCCceEEEEEEEecCchhh
Q psy8265 362 KNSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 362 ~nGkpe~IVgt~rdISErE~ 381 (630)
.++...+++++.+|||+++.
T Consensus 99 ~~~~~~~~v~~~~DITerk~ 118 (120)
T 3mqq_A 99 RTAPLAAGVWTFEDLSATRR 118 (120)
T ss_dssp TTSTTSSEEEEEEESCC---
T ss_pred CCCCceeEEEEEEcccHhhc
Confidence 35556788999999999874
No 25
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.21 E-value=7.5e-11 Score=99.19 Aligned_cols=114 Identities=11% Similarity=-0.013 Sum_probs=97.0
Q ss_pred EEeecc---CceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEE
Q psy8265 279 KSKHKL---DLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQT 355 (630)
Q Consensus 279 iTRhsl---DGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeT 355 (630)
+...+. +|+++++|+++..++|+.+++++|+.+..++++++...+...+...+..|.....++++..++|..+|+..
T Consensus 15 i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 94 (146)
T 2v0u_A 15 FVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLF 94 (146)
T ss_dssp EEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEE
T ss_pred EEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCcEEEEEE
Confidence 334567 89999999999999999999999999999999998887777777778888878889999999999999999
Q ss_pred EEEEEEe-CCCceEEEEEEEecCchhhHHHHhhhcccc
Q psy8265 356 SSRLVYK-NSKPDFVISTHRPLMEEEGRDLLGKRTMDF 392 (630)
Q Consensus 356 sa~li~~-nGkpe~IVgt~rdISErE~~E~L~~r~~el 392 (630)
.+.++.+ +|++.+++++.+|||+++..+.+++...++
T Consensus 95 ~~~~~~~~~g~~~~~~~~~~Dit~~~~~~~~~~~~~~~ 132 (146)
T 2v0u_A 95 HLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLI 132 (146)
T ss_dssp EEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEEEeECCCCCEEEEEEEEeechHHHHHHHHHHHHHHH
Confidence 9998876 678889999999999987655555444443
No 26
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.21 E-value=7.1e-11 Score=113.59 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=90.2
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSR 358 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~ 358 (630)
+...+.+|+|+++|+++..++||.++||+|+++..+.++.+.......+.+.+..|.....++++++|||+.+|++....
T Consensus 2 i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~ 81 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDSTIV 81 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEEEEE
T ss_pred EEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeeeEEE
Confidence 34568899999999999999999999999999888776655444445555667778888889999999999999999999
Q ss_pred EEEe-CCCceEEEEEEEecCchhh-HHHHh
Q psy8265 359 LVYK-NSKPDFVISTHRPLMEEEG-RDLLG 386 (630)
Q Consensus 359 li~~-nGkpe~IVgt~rdISErE~-~E~L~ 386 (630)
++.+ +|++..++++.+|||+++. ++.|+
T Consensus 82 p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~ 111 (227)
T 3ewk_A 82 PLMDNAGKPRQYISIRRDITAQKEAEAQLA 111 (227)
T ss_dssp EEECSSSCEEEEEEEEEECTTTTHHHHHHH
T ss_pred EEEcCCCCEEEEEEEEEehhhHHHHHHHHH
Confidence 9886 7899999999999999864 34444
No 27
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.19 E-value=7.2e-11 Score=119.48 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=91.7
Q ss_pred eecc---CceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEE
Q psy8265 281 KHKL---DLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357 (630)
Q Consensus 281 Rhsl---DGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa 357 (630)
..+. ||+|+++|+++..++||.++|++|+++.+++||++.....+.+.+.+..|.....++|++++||+++|++..+
T Consensus 26 ~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~ 105 (332)
T 2wkq_A 26 ITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHL 105 (332)
T ss_dssp EECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEE
T ss_pred EecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCCCEEEEeeEE
Confidence 3467 9999999999999999999999999999999988877777777788888888888999999999999999999
Q ss_pred EEEEe-CCCceEEEEEEEecCchhhHH
Q psy8265 358 RLVYK-NSKPDFVISTHRPLMEEEGRD 383 (630)
Q Consensus 358 ~li~~-nGkpe~IVgt~rdISErE~~E 383 (630)
.++.+ +|++.+++++.+|||+++..+
T Consensus 106 ~pi~d~~g~~~~~v~~~~DITe~k~~e 132 (332)
T 2wkq_A 106 QPMRDQKGDVQYFIGVQLDGTEHVRDA 132 (332)
T ss_dssp EEEECTTSCEEEEEEEEEEESSCCCHH
T ss_pred EEeEcCCCCEEEEEEEeccCchhhhhh
Confidence 99886 788999999999999976433
No 28
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.19 E-value=7.9e-11 Score=96.73 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=88.0
Q ss_pred eEEeeccC-ceeeeeccccccccCCChhhhccCc--ccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEE
Q psy8265 278 FKSKHKLD-LSLVSMDQRGKMLLGYSDTELANMG--GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQ 354 (630)
Q Consensus 278 FiTRhslD-GkftyVDprv~~LLGYspEELlG~S--~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVe 354 (630)
.+...+.+ |+++++|+++..++|+.+++++|.. +.+++||+|...+...+.. +..|.....++|+++++|.++|+.
T Consensus 23 ~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~g~~~~~~ 101 (125)
T 3eeh_A 23 ILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESADVECRVNATEEYQRWVW 101 (125)
T ss_dssp EEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCEEEEEEECGGGTTCEEEE
T ss_pred eEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCccEEEEEEcCCCCEEEEE
Confidence 34556778 9999999999999999999999987 8899999999999888887 556777788999999999999999
Q ss_pred EEEEEEEe-CCCceEEEEEEEecC
Q psy8265 355 TSSRLVYK-NSKPDFVISTHRPLM 377 (630)
Q Consensus 355 Tsa~li~~-nGkpe~IVgt~rdIS 377 (630)
..+.++.+ +|++..++++.+|||
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 102 IQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECC
T ss_pred EecEEEECCCCCEEEEEEEEEecC
Confidence 99999876 788899999999997
No 29
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.18 E-value=1.3e-10 Score=99.06 Aligned_cols=103 Identities=14% Similarity=-0.029 Sum_probs=79.3
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCc----eeeEEEEEecCCcEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGAS----GMIAYRFQTNDGGWQWLQ 354 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs----~s~eYRfrtKdGswVWVe 354 (630)
+...+.+|+|+++|+++..++||+++|++|+++..++++++.......+...+..+.. ...++++++|||+.+|++
T Consensus 6 i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~ 85 (119)
T 2vv6_A 6 MIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFPMH 85 (119)
T ss_dssp EEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEEEEE
T ss_pred EEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCCCEEEEE
Confidence 3446789999999999999999999999999999998888776655555555555543 235788999999999999
Q ss_pred EEEEEEEeCCCceEEEEEEEecCchhhH
Q psy8265 355 TSSRLVYKNSKPDFVISTHRPLMEEEGR 382 (630)
Q Consensus 355 Tsa~li~~nGkpe~IVgt~rdISErE~~ 382 (630)
.+...+..+ ....++++.+|||+++..
T Consensus 86 ~~~~~~~~~-~~~~~~~~~~DITerk~~ 112 (119)
T 2vv6_A 86 LSIGEMQSG-GEPYFTGFVRDLTEHQQT 112 (119)
T ss_dssp EEEEEEEET-TEEEEEEEEEECC-----
T ss_pred EEEEEEEEC-CeEEEEEEEEEcHHHHHH
Confidence 998887553 445688999999998753
No 30
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.15 E-value=1.4e-10 Score=113.24 Aligned_cols=102 Identities=12% Similarity=0.104 Sum_probs=89.5
Q ss_pred eEEeecc---CceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEE
Q psy8265 278 FKSKHKL---DLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQ 354 (630)
Q Consensus 278 FiTRhsl---DGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVe 354 (630)
-+...+. ||+|+++|+++..++||.++|++|+++..++++++...+...+...+..+.....+++++++||..+|+.
T Consensus 75 ~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~ 154 (258)
T 3p7n_A 75 ASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNA 154 (258)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE
T ss_pred cEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEe
Confidence 3445677 8999999999999999999999999999999999888888788888888888888999999999999999
Q ss_pred EEEEEEEe-CCCceEEEEEEEecCch
Q psy8265 355 TSSRLVYK-NSKPDFVISTHRPLMEE 379 (630)
Q Consensus 355 Tsa~li~~-nGkpe~IVgt~rdISEr 379 (630)
..+.++.+ +|++.+++++.+|||++
T Consensus 155 ~~~~pi~d~~g~~~~~v~~~~DITer 180 (258)
T 3p7n_A 155 VLVAPIYDDDDELLYFLGSQVEVDDD 180 (258)
T ss_dssp EEEEEEECTTSCSEEEEEEEEEC---
T ss_pred eEEEEEEcCCCCEEEEEEEeeecchh
Confidence 99999886 78899999999999998
No 31
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.15 E-value=4.1e-10 Score=91.71 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=89.6
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSR 358 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~ 358 (630)
+...+.+|+++++|+++..++|+.+++++|+.+..+.++++...+...+...+..|.....++++..++|..+|+...+.
T Consensus 20 i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (124)
T 3lyx_A 20 IVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIRMLHKDGHIGWIESMCV 99 (124)
T ss_dssp EEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEEEEccCCCEEEEEEEEE
Confidence 44567899999999999999999999999999887777778777777788888888878889999999999999999999
Q ss_pred EEEe-CCCceEEEEEEEecCchhh
Q psy8265 359 LVYK-NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 359 li~~-nGkpe~IVgt~rdISErE~ 381 (630)
++.+ +|++.+++++.+|||+++.
T Consensus 100 ~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 100 PIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEECSTTCEEEEEEEEEECSCC--
T ss_pred EEECCCCCEEEEEEEEecchhhhc
Confidence 9875 7888899999999999753
No 32
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.10 E-value=4.6e-10 Score=89.44 Aligned_cols=96 Identities=16% Similarity=0.057 Sum_probs=79.5
Q ss_pred cCceeeeeccccccccCCChhhhccCc--ccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEEEEE
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTELANMG--GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY 361 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEELlG~S--~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~li~ 361 (630)
.||+++++|+++..++||.++|++|+. +..+.++++...+...+.+.+..+.....+++++.++|..+|+...+.++.
T Consensus 12 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 91 (110)
T 1byw_A 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVK 91 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEEEEEEEee
Confidence 479999999999999999999999998 344445555555556666667777777788999999999999999999887
Q ss_pred e-CCCceEEEEEEEecCch
Q psy8265 362 K-NSKPDFVISTHRPLMEE 379 (630)
Q Consensus 362 ~-nGkpe~IVgt~rdISEr 379 (630)
+ +|++.+++++.+|||++
T Consensus 92 ~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 92 NEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp CTTCCEEEEEEEEEEEEEC
T ss_pred cCCCCEEEEEEEEEeccCC
Confidence 6 67888999999999974
No 33
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.10 E-value=3.7e-10 Score=99.82 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=95.4
Q ss_pred EEeeccCc---eeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEE
Q psy8265 279 KSKHKLDL---SLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQT 355 (630)
Q Consensus 279 iTRhslDG---kftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeT 355 (630)
+...+.+| +++++|+++..++|+..++++|+.+.+++++++...+...+...+..|.....++++..++|..+|+..
T Consensus 38 i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 117 (162)
T 3sw1_A 38 IVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNEL 117 (162)
T ss_dssp EEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEE
T ss_pred EEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceEEEECCCCCEEEEEE
Confidence 44557788 999999999999999999999999999999887777777777778888888889999999999999999
Q ss_pred EEEEEEe-CCCceEEEEEEEecCchh-hHHHHhhhcccc
Q psy8265 356 SSRLVYK-NSKPDFVISTHRPLMEEE-GRDLLGKRTMDF 392 (630)
Q Consensus 356 sa~li~~-nGkpe~IVgt~rdISErE-~~E~L~~r~~el 392 (630)
.+.++.+ +|+..+++++.+|||+++ .++.|++...++
T Consensus 118 ~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l 156 (162)
T 3sw1_A 118 SITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARP 156 (162)
T ss_dssp EEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC--
T ss_pred EEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHH
Confidence 9998875 788889999999999976 444565555443
No 34
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.10 E-value=5e-10 Score=93.78 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=83.9
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSR 358 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~ 358 (630)
+...+.+|+|+++|+++..++|+.+++++|+++.+++++++...+...+..++..+.. ..++++.+++|..+|+...+.
T Consensus 12 i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ 90 (126)
T 3mjq_A 12 ILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKEGTSIPAKARIW 90 (126)
T ss_dssp EEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccCCCEEEEEEEEE
Confidence 4456789999999999999999999999999999999999999888888887765554 678999999999999999887
Q ss_pred EEEeCCCceEEEEEEEecCchhh
Q psy8265 359 LVYKNSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 359 li~~nGkpe~IVgt~rdISErE~ 381 (630)
++.. +...+++++.+|||+++.
T Consensus 91 ~~~~-~~~~~~~~~~~DITe~k~ 112 (126)
T 3mjq_A 91 QGKW-HNEPCLFAIIKDLSKEER 112 (126)
T ss_dssp EEES-SSSEEEEEEEEECC----
T ss_pred eeeE-CCceEEEEEEEechHHHH
Confidence 6544 446788999999999764
No 35
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.09 E-value=7.1e-10 Score=90.69 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=86.9
Q ss_pred cCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEEEEEe-
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK- 362 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~li~~- 362 (630)
.+|+++++|+++..++|+.+++++|+++.+++++++...+...+...+..|.....++++..++|+.+|+...+.++.+
T Consensus 27 ~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 106 (130)
T 2z6d_A 27 PHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD 106 (130)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECT
T ss_pred CCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECC
Confidence 7899999999999999999999999999999999887777777777777777777888999999999999999998876
Q ss_pred CCCceEEEEEEEecCchhhH
Q psy8265 363 NSKPDFVISTHRPLMEEEGR 382 (630)
Q Consensus 363 nGkpe~IVgt~rdISErE~~ 382 (630)
+|++.+++++.+|||+++..
T Consensus 107 ~g~~~~~~~~~~Dit~~~~~ 126 (130)
T 2z6d_A 107 QGNTIKFIGMQVEVSKYTEG 126 (130)
T ss_dssp TSCEEEEEEEEEECCTTC--
T ss_pred CCCeeEEEEEEecchHHHHh
Confidence 68888999999999998753
No 36
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.07 E-value=6e-10 Score=91.36 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=80.8
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSR 358 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~ 358 (630)
+...+.+|+++++|+++..++|+.+++++|+++.+++ |++...+...+..++..+.......++..++|..+|++....
T Consensus 16 i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 94 (114)
T 3luq_A 16 LAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDCFVRADGRTQWLRWEVR 94 (114)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEEEEC--CCEEEEEEEEE
T ss_pred EEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeEEEcCCCcEEEEEEEEE
Confidence 4456789999999999999999999999999999987 887777777777777533334445589999999999999999
Q ss_pred EEEe-CCCceEEEEEEEecC
Q psy8265 359 LVYK-NSKPDFVISTHRPLM 377 (630)
Q Consensus 359 li~~-nGkpe~IVgt~rdIS 377 (630)
++.+ +|++.+++++.+|||
T Consensus 95 p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 95 PWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEECTTSCEEEEEEEEEECC
T ss_pred EeECCCCCEEEEEEEEeeCC
Confidence 8876 788889999999997
No 37
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.05 E-value=9.8e-10 Score=95.26 Aligned_cols=98 Identities=16% Similarity=0.054 Sum_probs=79.5
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCc----eeeEEEEEecCCcEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGAS----GMIAYRFQTNDGGWQWLQ 354 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs----~s~eYRfrtKdGswVWVe 354 (630)
+...+.+|+|+++|+++..++||.++|++|+++..++++++.......+...+..+.. ...++++++|||+.+|++
T Consensus 29 i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~ 108 (130)
T 1d06_A 29 TVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMK 108 (130)
T ss_dssp EEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEE
T ss_pred EEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEE
Confidence 4456789999999999999999999999999999999888776666666665555542 235788999999999999
Q ss_pred EEEEEEEeCCCceEEEEEEEecC
Q psy8265 355 TSSRLVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 355 Tsa~li~~nGkpe~IVgt~rdIS 377 (630)
.+..++..+ ....++++.+|||
T Consensus 109 ~~~~~~~~~-~~~~~~~~~~DIT 130 (130)
T 1d06_A 109 LAVGEMRSG-GERFFTGFIRDLT 130 (130)
T ss_dssp EEEEEEEET-TEEEEEEEEEECC
T ss_pred EEEEEEEEC-CeEEEEEEEEECc
Confidence 999887554 4456889999997
No 38
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.01 E-value=9.2e-10 Score=96.43 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=77.9
Q ss_pred cCceeeeeccccccccCCChhhhccCcccceecccc-----------HHHHHHHHHHHHhcCCceeeEEEEEecCCcEEE
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDD-----------LAYVASAHQELLKTGASGMIAYRFQTNDGGWQW 352 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDD-----------l~~V~eah~~lLkkGqs~s~eYRfrtKdGswVW 352 (630)
.+|+|+++|+++..++||.++|++|+++..++++++ .......+.+.+..|.....++++++++|+.+|
T Consensus 46 ~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~ 125 (149)
T 3d72_A 46 KDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFV 125 (149)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEE
T ss_pred CCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCceEEEEEEECCCCCEEE
Confidence 689999999999999999999999999999998873 444444556666677777788999999999999
Q ss_pred EEEEEEEEEe-CCCceEEEEEEEe
Q psy8265 353 LQTSSRLVYK-NSKPDFVISTHRP 375 (630)
Q Consensus 353 VeTsa~li~~-nGkpe~IVgt~rd 375 (630)
++..+.++.+ +|++.+++++.+|
T Consensus 126 ~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 126 NFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp EEEEEEEEECTTSSEEEEEEECCC
T ss_pred EEEEEEEEEcCCCCEEEEEEEEeC
Confidence 9999999876 6888888887665
No 39
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=98.98 E-value=1.1e-09 Score=94.21 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=71.8
Q ss_pred eEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEE
Q psy8265 278 FKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357 (630)
Q Consensus 278 FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa 357 (630)
.+...+.+|+|++||++++.++||+++|++|+++..+.++.+.......+. .+..+.....++++++|||+.+|++.++
T Consensus 23 ~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~kdG~~~~v~~~~ 101 (117)
T 2r78_A 23 GIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLA-RIVGGEPLREERTVWTRNGDQLTVELSA 101 (117)
T ss_dssp EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHH-HHHTTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred eEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHH-HHHcCCcEEEEEEEEecCCCEEEEEEEE
Confidence 344568899999999999999999999999999877765544333333333 3445655667899999999999999998
Q ss_pred EEEEeCCCceEEEEEEEecC
Q psy8265 358 RLVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 358 ~li~~nGkpe~IVgt~rdIS 377 (630)
.++. +|+ ++++.+|||
T Consensus 102 ~~~~-~g~---~~~i~~DIT 117 (117)
T 2r78_A 102 HLLP-DGK---ILGIARDVS 117 (117)
T ss_dssp EECT-TSC---EEEEEEC--
T ss_pred EEec-CCe---EEEEEEeCC
Confidence 8764 555 788889986
No 40
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.93 E-value=4.8e-09 Score=87.47 Aligned_cols=101 Identities=15% Similarity=0.045 Sum_probs=82.8
Q ss_pred EEeecc---CceeeeeccccccccCCChhhhccCc--ccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEE
Q psy8265 279 KSKHKL---DLSLVSMDQRGKMLLGYSDTELANMG--GYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWL 353 (630)
Q Consensus 279 iTRhsl---DGkftyVDprv~~LLGYspEELlG~S--~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWV 353 (630)
+...+. +|+|+++|+++..++||..++++|++ +..+.++++...+...+...+..+.....++++++++|..+|+
T Consensus 32 i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 111 (138)
T 2l0w_A 32 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLC 111 (138)
T ss_dssp EEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEEEECCCCCEEEE
Confidence 334566 89999999999999999999999998 4555566665555666666666677777889999999999999
Q ss_pred EEEEEEEEe-CCCceEEEEEEEecCch
Q psy8265 354 QTSSRLVYK-NSKPDFVISTHRPLMEE 379 (630)
Q Consensus 354 eTsa~li~~-nGkpe~IVgt~rdISEr 379 (630)
...+.++.+ +|++.+++++.+|||++
T Consensus 112 ~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 112 LVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred EEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 999998876 67888899999999974
No 41
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.87 E-value=4.9e-09 Score=86.92 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=71.6
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSR 358 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~ 358 (630)
+...+.+|+|+++|+++..++||.++|++|+++.++++.++... +.. +..+.....++++++++|+.+|++....
T Consensus 26 i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~-~~~~~~~~~e~~~~~~~g~~~~~~~~~~ 100 (118)
T 3olo_A 26 SFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEE-IRQKNNYTFKTRYRSQSGRIFLVEMSLT 100 (118)
T ss_dssp EEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHH-HHHHSEEEEEEEEECTTCCEEEEEEEEE
T ss_pred EEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHH-HHhcCcEEEEEEEEccCCCEEEEEEEEE
Confidence 33457899999999999999999999999999988875433222 222 2334456678999999999999999988
Q ss_pred EEEeCCCceEEEEEEEecC
Q psy8265 359 LVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 359 li~~nGkpe~IVgt~rdIS 377 (630)
++..++. .+++++.+|||
T Consensus 101 ~~~~~~~-~~~~~~~~DIT 118 (118)
T 3olo_A 101 FLEDQER-RFSCVFVREKS 118 (118)
T ss_dssp EEEETTE-EEEEEEEEEC-
T ss_pred EEEECCc-cEEEEEEEeCC
Confidence 8765543 47788999986
No 42
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.86 E-value=4.7e-09 Score=93.01 Aligned_cols=111 Identities=6% Similarity=-0.019 Sum_probs=87.6
Q ss_pred EEeec-cCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCcee-eEE--EEEecC--CcEEE
Q psy8265 279 KSKHK-LDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGM-IAY--RFQTND--GGWQW 352 (630)
Q Consensus 279 iTRhs-lDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s-~eY--RfrtKd--GswVW 352 (630)
+...+ .||+|+++|+++..++|+. +++|+++.+++++++...+...+.+++.+|+... ..+ ++..++ |..+|
T Consensus 30 i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~ 107 (158)
T 3k3c_A 30 LVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERY 107 (158)
T ss_dssp EEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEEEEEEESSSSCEEEEE
T ss_pred EEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccceeEEeccCCCCcceEE
Confidence 44456 8999999999999999999 9999999999998887777778888888887633 223 334433 77899
Q ss_pred EEEEEEEEEe-CCCceEEEEEEEecCchh-hHHHHhhhccc
Q psy8265 353 LQTSSRLVYK-NSKPDFVISTHRPLMEEE-GRDLLGKRTMD 391 (630)
Q Consensus 353 VeTsa~li~~-nGkpe~IVgt~rdISErE-~~E~L~~r~~e 391 (630)
+.....++.+ +|++.+++++.+|||+++ .++.|+....+
T Consensus 108 ~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~~~ 148 (158)
T 3k3c_A 108 FDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEE 148 (158)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHHHH
Confidence 9999999876 789999999999999976 44555544443
No 43
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.86 E-value=8.8e-10 Score=115.25 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=63.8
Q ss_pred CCCCCCCCCCCCCCCCcc-------ccccccCCCCCCCccccCcccccccccccCCC-CCeEEEeeeecccCCCCccCCC
Q psy8265 501 PEYMSQSLYDNRLPYENL-------FHQYRPYYPEYQPYTVSNGFSLPTYEVNKSND-CDKLYCHQTLTADQNSKGYSSP 572 (630)
Q Consensus 501 ~~~~~~~~~~~~~~~~n~-------~~q~~~~~~~~~~~~~~nGF~l~~~~~~~~~~-~~~~y~~~~~~~~~~~~~ylg~ 572 (630)
|.|||+.+-.-.+..++| .+| +++||.+++ +.+ |.++|++ +++.++||+
T Consensus 6 ~~~~~~~~~~~~~s~~el~~~~~e~~L~------------aldgF~~vv-----s~~~G~i~yvS------~~~~~~Lg~ 62 (317)
T 4dj3_A 6 PEFPGRLEDVTVYSLEDLTALASEHTSK------------NTDTFAAVF-----SFLSGRLVHIS------EQAALILNS 62 (317)
T ss_dssp ----CCCCCCCBCCTTTTTSTTHHHHTS------------CTTEEEEEE-----ETTTCBEEEEC------TTHHHHTTC
T ss_pred cCCCCCccCccccCHHHHHhhhhHHHHh------------ccCCEEEEE-----EcCCcEEEEEC------CHHHHHcCC
Confidence 568887666555555544 678 999998886 565 9999999 668999999
Q ss_pred CCCccchhhhhhhccccCHHHHHHhhhccCCCCC
Q psy8265 573 FESDIVHQSVYELVHSEDREELQRQLMWNSFLPP 606 (630)
Q Consensus 573 hqsdv~hqsv~elih~edr~~f~~qlhw~~~~p~ 606 (630)
+|.|++.+|+||+||.+||++|++||. ...+|.
T Consensus 63 ~~~el~g~s~~d~ihp~D~~~f~~ql~-~~~lP~ 95 (317)
T 4dj3_A 63 KRGFLKSVHFVDLLAPQDVRAFYAHTA-PTQLPF 95 (317)
T ss_dssp CHHHHHTSBGGGGBCGGGHHHHHHHTC-TTTCCC
T ss_pred CHHHHcCCchhhhcChhhHHHHHHhhc-ccCCCC
Confidence 999999999999999999999999993 333444
No 44
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=98.79 E-value=1.8e-08 Score=85.58 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=69.0
Q ss_pred EEeeccCceeeeeccccccccCCChhhh--ccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTEL--ANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTS 356 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEEL--lG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTs 356 (630)
+...+.||+|+++|+++..++||.++|+ +|+++.+++| |...+...+.... .+.....++++++|||+.+|++.+
T Consensus 30 i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~e~~~~~~dG~~~~~~~~ 106 (126)
T 3bwl_A 30 IDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFS-VDERRKFEGLYERRDGSTMSVEVH 106 (126)
T ss_dssp EEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCC-TTCEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHh-cCCCcceEEEEEeCCCCEEEEEEE
Confidence 4456889999999999999999999999 5788888887 4444433322211 233345668889999999999987
Q ss_pred EEEEEeCCCceEEEEEEEecC
Q psy8265 357 SRLVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 357 a~li~~nGkpe~IVgt~rdIS 377 (630)
...+..+|.+ .++++.+|||
T Consensus 107 ~~~~~~~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 107 LLRFNLEGED-RFLAISRDIT 126 (126)
T ss_dssp EEEEEETTEE-EEEEEEEEC-
T ss_pred eEEEecCCcE-EEEEEEEeCC
Confidence 7665445554 5778889987
No 45
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.76 E-value=2.4e-08 Score=87.54 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=76.6
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCc----eeeEEEEEecCCcEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGAS----GMIAYRFQTNDGGWQWLQ 354 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs----~s~eYRfrtKdGswVWVe 354 (630)
+...+.+|+++++|+++..++|+.+++++|+.+.+++++++...+...+..+...+.. ...++++..++|..+|+.
T Consensus 53 i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 132 (167)
T 1v9y_A 53 AVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTR 132 (167)
T ss_dssp EEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CEEEEECTTSCEEEEE
T ss_pred EEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEE
Confidence 3446789999999999999999999999999999999988877666666666654433 345889999999999999
Q ss_pred EEEEEEEeCCCceEEEEEEEecCchhh
Q psy8265 355 TSSRLVYKNSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 355 Tsa~li~~nGkpe~IVgt~rdISErE~ 381 (630)
....++..+|+.. ++++.+|||+++.
T Consensus 133 ~~~~~~~~~g~~~-~~~~~~DiT~~~~ 158 (167)
T 1v9y_A 133 FALSKVSAEGKVY-YLALVRDASVEMA 158 (167)
T ss_dssp EEEEEEEETTEEE-EEEEEEC------
T ss_pred EEEEEEecCCCEE-EEEEEecCcHHHH
Confidence 9998875566654 8899999999764
No 46
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.71 E-value=2.9e-09 Score=120.34 Aligned_cols=102 Identities=6% Similarity=-0.012 Sum_probs=90.9
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSR 358 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~ 358 (630)
+...++||+|+++|+++..++||.++|++|+.+...+|++|.+.+....+ .+..|+....++|+++|||+.+|+..++.
T Consensus 531 i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~-~l~~g~~~~~E~~~~~~dG~~~~~~~~~~ 609 (635)
T 4eho_A 531 VLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAE-LIDHGRGWRGEVLLRGAGNRPLPLAVRAD 609 (635)
T ss_dssp CEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHH-HHHHCCCBCCCCEECCSSSSCEECCCCEE
T ss_pred EEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHH-HHHcCCcEEEEEEEEccCCcEEEEEEEEE
Confidence 34568899999999999999999999999999999999999988876654 45567777789999999999999999999
Q ss_pred EEEe-CCCceEEEEEEEecCchhh
Q psy8265 359 LVYK-NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 359 li~~-nGkpe~IVgt~rdISErE~ 381 (630)
++++ +|++.+++++.+|||++|.
T Consensus 610 pv~d~~G~v~g~v~i~~DITerK~ 633 (635)
T 4eho_A 610 PVTRTEDQSLGFVLIFSDATDRRT 633 (635)
T ss_dssp EECSTTSSCCEEEECCCCCSSSCC
T ss_pred EEECCCCCEEEEEEEEEeCchHhh
Confidence 9986 8999999999999999874
No 47
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.71 E-value=1.1e-08 Score=106.70 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=47.4
Q ss_pred CCCccccccccCCCCCCCccccCcccccccccccCCC-CCeEEEeeeecccCCCCccCCCCCCccchhhhhhhccccCHH
Q psy8265 514 PYENLFHQYRPYYPEYQPYTVSNGFSLPTYEVNKSND-CDKLYCHQTLTADQNSKGYSSPFESDIVHQSVYELVHSEDRE 592 (630)
Q Consensus 514 ~~~n~~~q~~~~~~~~~~~~~~nGF~l~~~~~~~~~~-~~~~y~~~~~~~~~~~~~ylg~hqsdv~hqsv~elih~edr~ 592 (630)
..+.+.+| +++||++++ +.+ |.++|++ +++.++||+.|.|+|.+|+||+||.|||+
T Consensus 15 ~~~~lll~------------a~dgF~~vv-----s~~~G~i~yvS------~s~~~~Lg~~~~el~g~s~~d~iHp~D~~ 71 (309)
T 3gdi_A 15 ITSEYIVK------------NADMFAVAV-----SLVSGKILYIS------NQVASIFHCKKDAFSDAKFVEFLAPHDVS 71 (309)
T ss_dssp CSCC----------------CTTEEEEEE-----CTTTCBEEEEC------TTTTTTC-------CCSBGGGGBCTTTHH
T ss_pred HHHHHHHH------------hcCCEEEEE-----ECCCceEEEEC------CHHHHHcCCCHHHHcCCchhhccCHhHHH
Confidence 34567788 999998886 565 9999999 67899999999999999999999999999
Q ss_pred HHHHhhhc
Q psy8265 593 ELQRQLMW 600 (630)
Q Consensus 593 ~f~~qlhw 600 (630)
+|++||+.
T Consensus 72 ~~~~~L~~ 79 (309)
T 3gdi_A 72 VFHSYTTP 79 (309)
T ss_dssp HHHHHTCT
T ss_pred HHHHhccc
Confidence 99999986
No 48
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.69 E-value=9.1e-09 Score=95.56 Aligned_cols=116 Identities=6% Similarity=0.001 Sum_probs=79.6
Q ss_pred EEeec-cCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCcee-eEEEE--EecC--CcEEE
Q psy8265 279 KSKHK-LDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGM-IAYRF--QTND--GGWQW 352 (630)
Q Consensus 279 iTRhs-lDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s-~eYRf--rtKd--GswVW 352 (630)
+...+ .||+|+++|+++..++|+. +++|+++.+++++++...+...+.++++.|+... ..+++ ..++ |..+|
T Consensus 50 i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gg~~~~ 127 (185)
T 3kx0_X 50 LVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERY 127 (185)
T ss_dssp EEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEEEEEC--------CCEE
T ss_pred EEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccceeEEeeccCCCCccEE
Confidence 44456 8999999999999999999 9999999999988776656667777887787643 22333 4333 78899
Q ss_pred EEEEEEEEEe-CCCceEEEEEEEecCchh-hHHH----Hhhhcccccccc
Q psy8265 353 LQTSSRLVYK-NSKPDFVISTHRPLMEEE-GRDL----LGKRTMDFKVSY 396 (630)
Q Consensus 353 VeTsa~li~~-nGkpe~IVgt~rdISErE-~~E~----L~~r~~elk~sf 396 (630)
+.....++.+ +|++.+++++.+|||+++ .++. |++.+.+++..+
T Consensus 128 ~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~~~~ll~~~~~~l~~~~ 177 (185)
T 3kx0_X 128 FDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVR 177 (185)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-----------------
T ss_pred EEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876 788999999999999975 3334 555555554433
No 49
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.67 E-value=1.8e-08 Score=90.76 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=71.2
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCC-------ceeeEEEEEecCCcEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGA-------SGMIAYRFQTNDGGWQ 351 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGq-------s~s~eYRfrtKdGswV 351 (630)
+...+.+|+|+++|+++..++||+++|++|+++.+++++++.......+......+. ....+.++++|||+.+
T Consensus 20 i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~rkdG~~~ 99 (129)
T 3mfx_A 20 MILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPAQETTLICASGKAK 99 (129)
T ss_dssp EEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEEEEEEEEECTTSCEE
T ss_pred EEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCCceEEEEEcCCCCEE
Confidence 344678999999999999999999999999999999999876543333333222222 1246899999999999
Q ss_pred EEEEEEEEEEeCCCceEEEEEEEecC
Q psy8265 352 WLQTSSRLVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 352 WVeTsa~li~~nGkpe~IVgt~rdIS 377 (630)
|++.+..++. ++++ .+|++.+|+.
T Consensus 100 ~velsis~i~-~~~~-~~v~~~~~~~ 123 (129)
T 3mfx_A 100 DVELSISYIP-GHEP-MFVMVMHDLE 123 (129)
T ss_dssp EEEEEEEEEC-SSSC-EEEEEEEEC-
T ss_pred EEEEEEEEec-CCCc-EEEEEEechh
Confidence 9999998875 4444 4556677763
No 50
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.67 E-value=4e-09 Score=110.42 Aligned_cols=57 Identities=12% Similarity=0.011 Sum_probs=52.7
Q ss_pred ccCcccccccccccCC-CCCeEEEeeeecccCCCCccCCCCCCccchhhhhhhccccCHHHHHHhhhcc
Q psy8265 534 VSNGFSLPTYEVNKSN-DCDKLYCHQTLTADQNSKGYSSPFESDIVHQSVYELVHSEDREELQRQLMWN 601 (630)
Q Consensus 534 ~~nGF~l~~~~~~~~~-~~~~~y~~~~~~~~~~~~~ylg~hqsdv~hqsv~elih~edr~~f~~qlhw~ 601 (630)
+++||++++ +. +|.++|++ +++.++||++|.|+|.||+||+||.+||++|++||+..
T Consensus 34 aldGF~~vv-----s~~~G~i~yvS------~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~qL~~~ 91 (320)
T 4dj2_A 34 NQDTFSVAV-----SFLTGRIVYIS------EQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTTPS 91 (320)
T ss_dssp CSSEEEEEE-----ETTTCBEEEEC------THHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHHCCTT
T ss_pred ccCCEEEEE-----ECCCceEEEEC------cHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHhhccc
Confidence 999998886 55 49999999 55789999999999999999999999999999999976
No 51
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.62 E-value=1.3e-08 Score=86.01 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=71.5
Q ss_pred EEeeccC-ceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhc-CCce---eeEEEEEecCCcEEEE
Q psy8265 279 KSKHKLD-LSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKT-GASG---MIAYRFQTNDGGWQWL 353 (630)
Q Consensus 279 iTRhslD-GkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkk-Gqs~---s~eYRfrtKdGswVWV 353 (630)
+...+.+ |+|+++|++++.++||+++||+|+++.+++++++...........+.. |... ..+.++++|||+.+|+
T Consensus 11 i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v 90 (114)
T 1ll8_A 11 IFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIPV 90 (114)
T ss_dssp EEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTCCCEEE
T ss_pred EEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEecCCCEEEE
Confidence 4456788 999999999999999999999999999999988754322211111111 2211 3457889999999999
Q ss_pred EEEEEEEEeCCCceEEEEEEEecC
Q psy8265 354 QTSSRLVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 354 eTsa~li~~nGkpe~IVgt~rdIS 377 (630)
+.+..++..+++ ..++++.+|+.
T Consensus 91 ~~~~~~~~~~~~-~~~v~~~~~~~ 113 (114)
T 1ll8_A 91 SVWMKRMRQERR-LCCVVVLEPVE 113 (114)
T ss_dssp ECCEECCBSSSS-BEEEEEEEECC
T ss_pred EEEEEeeccCCc-cEEEEEEeecC
Confidence 999887654443 46777777765
No 52
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.57 E-value=6.8e-08 Score=80.98 Aligned_cols=94 Identities=13% Similarity=0.038 Sum_probs=72.0
Q ss_pred eEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCc-EEEEEEE
Q psy8265 278 FKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGG-WQWLQTS 356 (630)
Q Consensus 278 FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGs-wVWVeTs 356 (630)
.+...+.+|+|+++|+++..++||.+++++|+++.++++++....+......++..|+.. ++ ++|. .+|+...
T Consensus 31 ~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~ 104 (125)
T 3fc7_A 31 GIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT----RS--EDAVGGRHYHNQ 104 (125)
T ss_dssp EEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE----EE--EEEETTEEEEEE
T ss_pred eEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE----Ee--EcCCCcEEEEEE
Confidence 344568899999999999999999999999999999995555555555556666666543 33 3444 6788888
Q ss_pred EEEEEeCCCceEEEEEEEecC
Q psy8265 357 SRLVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 357 a~li~~nGkpe~IVgt~rdIS 377 (630)
+.++..+|+..+++++.+|||
T Consensus 105 ~~p~~~~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 105 YIPVDSHRKSDTFQLVSRDIT 125 (125)
T ss_dssp EEESSTTTTTTEEEEEEEECC
T ss_pred EEeEecCCCeEEEEEEEecCC
Confidence 888655677788999999997
No 53
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.51 E-value=2e-08 Score=88.34 Aligned_cols=46 Identities=20% Similarity=0.046 Sum_probs=38.7
Q ss_pred CCCCC-CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 166 RSPPA-SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 166 ~~~~~-~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
..+++ .|++.+|+|+|||+++.++|||+++|| +|+++++++||.+.
T Consensus 7 ~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el-----~G~~~~~~ihp~D~ 53 (111)
T 2vlg_A 7 TKTDIHAVLASNGRIIYISANSKLHLGYLQGEM-----IGSFLKTFLHEEDQ 53 (111)
T ss_dssp --CCEEEEECTTSBEEEECTTHHHHHSCCHHHH-----TTSBGGGGBCGGGH
T ss_pred cCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHH-----cCCcHHHeECHhHH
Confidence 33443 377899999999999999999999995 89999999999754
No 54
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.51 E-value=1.5e-07 Score=87.97 Aligned_cols=103 Identities=8% Similarity=0.015 Sum_probs=80.0
Q ss_pred eEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceee------------EEEEEe
Q psy8265 278 FKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMI------------AYRFQT 345 (630)
Q Consensus 278 FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~------------eYRfrt 345 (630)
-+...+.||+|+++|+++..++|+.++|++|+++.+++.. +...+.+.++.++..|..... ..|-..
T Consensus 34 gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~~~~~~~~~~~~~~~~ 112 (152)
T 3mxq_A 34 ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSRPVS 112 (152)
T ss_dssp EEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECCSSSCSSCC-------
T ss_pred CEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeecccccccccccccCCCC
Confidence 3455689999999999999999999999999999998876 888888889999988864211 122234
Q ss_pred cCCcEEEEEEEEEEEEe-CCCceEEEEEEEecCchhh
Q psy8265 346 NDGGWQWLQTSSRLVYK-NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 346 KdGswVWVeTsa~li~~-nGkpe~IVgt~rdISErE~ 381 (630)
++|.++|...+..++.+ +|++.+++++.+|||++..
T Consensus 113 ~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~ 149 (152)
T 3mxq_A 113 GEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQAS 149 (152)
T ss_dssp ---CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC--
T ss_pred CCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHh
Confidence 67888999988888876 7999999999999999753
No 55
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.47 E-value=1.5e-07 Score=80.83 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=72.4
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSR 358 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~ 358 (630)
+...+.||+|+++|+++..++|+.++|++|+++.+++++++...+...+.+++++|+....+++....+|. |+.....
T Consensus 25 i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~ 102 (118)
T 3fg8_A 25 FMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRVDSLYSPGM--TIEVTAA 102 (118)
T ss_dssp EEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEECSSSTTC--EEEEEEE
T ss_pred EEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEEEEEcCCCe--EEEEEEE
Confidence 44568899999999999999999999999999999988777667777788888888776554444444675 5555555
Q ss_pred EEEeCCCceEEEEEEEecCch
Q psy8265 359 LVYKNSKPDFVISTHRPLMEE 379 (630)
Q Consensus 359 li~~nGkpe~IVgt~rdISEr 379 (630)
++ .+ .++++.+|||++
T Consensus 103 p~-~~----g~v~~~~DITer 118 (118)
T 3fg8_A 103 AD-SG----ALVVHFRDVTAE 118 (118)
T ss_dssp EE-TT----EEEEEEEECSCC
T ss_pred Ec-CC----cEEEEEEeccCC
Confidence 43 22 388899999985
No 56
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.45 E-value=4.8e-07 Score=75.72 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=72.0
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCc-eeeEEEEEecCCcEEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGAS-GMIAYRFQTNDGGWQWLQTSS 357 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs-~s~eYRfrtKdGswVWVeTsa 357 (630)
+...+.+|+|+++|+++..++|+.+++++|+++.+++++++. +...+.+.++.+.. ...+++++ ++|+.+|++..+
T Consensus 20 i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 96 (115)
T 3b33_A 20 TLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTFV-VDGRPLMLEVTV 96 (115)
T ss_dssp EEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEEE-ETTEEEEEEEEE
T ss_pred EEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEEe-cCCCEEEEEEEE
Confidence 345678999999999999999999999999999988876431 12233445555654 34567777 889999999999
Q ss_pred EEEEeCCCceEEEEEEEecC
Q psy8265 358 RLVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 358 ~li~~nGkpe~IVgt~rdIS 377 (630)
.++.++|. .+++.+.+||+
T Consensus 97 ~pi~~~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 97 SPITWQRQ-LMLLVEMRKID 115 (115)
T ss_dssp EEEEETTE-EEEEEEEEEC-
T ss_pred EEeecCCc-eEEEEEEEeCC
Confidence 88866444 67888888874
No 57
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.40 E-value=4.9e-07 Score=96.18 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=49.3
Q ss_pred cceeeEEeeccC-ceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHH
Q psy8265 274 KEVMFKSKHKLD-LSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAH 327 (630)
Q Consensus 274 ~s~~FiTRhslD-GkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah 327 (630)
....|+...+.| |+|+|||+++..+|||.++||+|+++++|+||+|++.+.+.+
T Consensus 94 ~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L 148 (387)
T 4f3l_B 94 AADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQL 148 (387)
T ss_dssp TCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH
T ss_pred cCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHh
Confidence 345688888888 999999999999999999999999999999999999888765
No 58
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.34 E-value=1.6e-06 Score=91.07 Aligned_cols=87 Identities=9% Similarity=0.038 Sum_probs=66.1
Q ss_pred ceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCC-----------ceeeEEEE
Q psy8265 275 EVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGA-----------SGMIAYRF 343 (630)
Q Consensus 275 s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGq-----------s~s~eYRf 343 (630)
...|+...+.||+|+|||+++..+|||.++||+|+++++++||+|++.+.+.+......+. ......|+
T Consensus 95 ~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~cr~ 174 (361)
T 4f3l_A 95 LDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKNQLEFCCHM 174 (361)
T ss_dssp TTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGGGEEEEEEEE
T ss_pred cCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCCCCcccccccCceeEEEEE
Confidence 3556777789999999999999999999999999999999999999999888765332111 12234565
Q ss_pred Eec------CCcEEEEEEEEEEEE
Q psy8265 344 QTN------DGGWQWLQTSSRLVY 361 (630)
Q Consensus 344 rtK------dGswVWVeTsa~li~ 361 (630)
+.+ .+.|.|+...+.+..
T Consensus 175 ~~~~~~~~~~~~y~~i~~~G~~~~ 198 (361)
T 4f3l_A 175 LRGTIDPKEPSTYEYVRFIGNFKS 198 (361)
T ss_dssp ECCCSCSSSCCCEEEEEEEEEEEE
T ss_pred eccCCCCCCCCceEEEEEEEEEEe
Confidence 543 356888887776653
No 59
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.16 E-value=1.5e-05 Score=73.85 Aligned_cols=100 Identities=12% Similarity=0.042 Sum_probs=73.3
Q ss_pred EEeeccCceeeeeccc---cccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecC-CcEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQR---GKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTND-GGWQWLQ 354 (630)
Q Consensus 279 iTRhslDGkftyVDpr---v~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKd-GswVWVe 354 (630)
++-.+.+|+|+|+|++ +.+++| .+++++|+++.++ ||.........+.+.+++|+....++.+..++ | .++.
T Consensus 32 I~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~-~~~~~~~~v~~i~~~l~~g~~~~~~~~~~~~~~~--~~v~ 107 (151)
T 2qkp_A 32 ITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELC-HPPKVLDKVKKVFELLRNGQRDKVNMWFQSERLG--KFVY 107 (151)
T ss_dssp EEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGS-SCHHHHHHHHHHHHHHHTTSBSEEEEEEEETTTT--EEEE
T ss_pred eEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHh-CCHHHHHHHHHHHHHHHcCCccEEEEEEecCCCC--eEEE
Confidence 4456889999999999 999999 6689999999885 55444333333455566787655555553333 4 4567
Q ss_pred EEEEEEEe-CCCceEEEEEEEecCchhhH
Q psy8265 355 TSSRLVYK-NSKPDFVISTHRPLMEEEGR 382 (630)
Q Consensus 355 Tsa~li~~-nGkpe~IVgt~rdISErE~~ 382 (630)
.+..++++ +|+..++|.+.+|||+.+..
T Consensus 108 v~~~Pi~d~~G~~~G~vev~~Dit~l~~l 136 (151)
T 2qkp_A 108 VTYAAVRDQAGDFQGVLEYVQDIKPFFEL 136 (151)
T ss_dssp EEEEEEECTTCCEEEEEEEEEECGGGGGG
T ss_pred EEEEEEECCCCCEEEEEEEEEECHHHHhh
Confidence 77778887 79999999999999986643
No 60
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.14 E-value=3.5e-06 Score=88.81 Aligned_cols=54 Identities=22% Similarity=0.110 Sum_probs=48.5
Q ss_pred eeeEEeec-cCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHH
Q psy8265 276 VMFKSKHK-LDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQE 329 (630)
Q Consensus 276 ~~FiTRhs-lDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~ 329 (630)
..|....+ .||+|+|||+++..+|||.++||+|+++++|+||+|++.+.+.+..
T Consensus 3 dgF~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L~~ 57 (339)
T 3rty_A 3 DSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITT 57 (339)
T ss_dssp SCEEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHHHT
T ss_pred cEEEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHHhc
Confidence 56888888 5999999999999999999999999999999999999987766543
No 61
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.06 E-value=1.3e-05 Score=62.02 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=61.1
Q ss_pred EeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEEE
Q psy8265 280 SKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRL 359 (630)
Q Consensus 280 TRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~l 359 (630)
...+.+|+++++|+++..++|+.+++++|+++.++ +++.. +...+.+.+..+... .++.. +|+..|+..++.+
T Consensus 6 ~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~~~-~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~p 78 (96)
T 3a0s_A 6 ITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDFEE-IGSVAESVFENKEPV--FLNFY--KFGERYFNIRFSP 78 (96)
T ss_dssp EEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTCHH-HHHHHHHHHHHTCCE--EEEEE--EETTEEEEEEEEE
T ss_pred EEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cchHH-HHHHHHHHhccCCeE--EEEEE--cCCcEEEEEEEEE
Confidence 44578999999999999999999999999999888 44433 333444555545432 33333 3444678888888
Q ss_pred EEeC-CC-ceEEEEEEEe
Q psy8265 360 VYKN-SK-PDFVISTHRP 375 (630)
Q Consensus 360 i~~n-Gk-pe~IVgt~rd 375 (630)
+.+. ++ ..+++++.+|
T Consensus 79 ~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 79 FRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EECTTTCCEEEEEEEEEC
T ss_pred eEcCCCCeeeEEEEEecC
Confidence 7753 44 4677777654
No 62
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=97.81 E-value=2.1e-05 Score=66.50 Aligned_cols=100 Identities=13% Similarity=0.026 Sum_probs=62.7
Q ss_pred cCCCCCCCCC-CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCCC---CccccC--CCCCC--eEE
Q psy8265 161 GSNPSRSPPA-SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSPK---SYYQSY--NENGP--SER 232 (630)
Q Consensus 161 gfll~~~~~~-~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~k---~~~c~l--d~rSf--F~R 232 (630)
++++..++++ .+.+.+|+|+|+|+++.++|||+++|| +|+++++++||.+... .+...+ ....+ -+|
T Consensus 5 ~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el-----~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r 79 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQEL-----LGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFR 79 (121)
T ss_dssp ---CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGT-----TTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEE
T ss_pred cceecCCCceEEEECCCceEEEECcchhhhhCCChHHH-----cCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 3455556665 467999999999999999999999994 8999999999985432 111111 11111 223
Q ss_pred e-eeeeeEEEeeccccc---C-CCCCeEEEEEEeeCCC
Q psy8265 233 L-DIRGRIKILHGQNRK---L-EEPPLALFAICTPFGP 265 (630)
Q Consensus 233 M-k~rGRlKvLhg~~rk---s-e~p~lcLVAIarPL~~ 265 (630)
+ ...|.+.++...... . .....+++++++.|..
T Consensus 80 ~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~ 117 (121)
T 3f1p_B 80 FRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKN 117 (121)
T ss_dssp EECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCC
T ss_pred EEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEccc
Confidence 3 335666655433221 1 2234578888888864
No 63
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=97.77 E-value=8.9e-05 Score=63.71 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=61.7
Q ss_pred EEeeccCceeeeeccccccccC------------CChhhhccCcccceeccccHHHHHHHHHHHHhcCC-ceeeEEEEEe
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLG------------YSDTELANMGGYDLVHYDDLAYVASAHQELLKTGA-SGMIAYRFQT 345 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLG------------YspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGq-s~s~eYRfrt 345 (630)
+...+.+|+|+++|+++..++| |.+++++|+++.+++...+ .. ..+++... ....++++
T Consensus 18 viv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~-- 89 (121)
T 4hi4_A 18 VMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPA--HQ----RHLLANLTGVHKAELNL-- 89 (121)
T ss_dssp EEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSHH--HH----HHHHHHCSSCEEEEEEE--
T ss_pred EEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCHH--HH----HHHHhCcCCCcEEEEEE--
Confidence 4446789999999999999996 8999999999888764321 11 22333322 22333332
Q ss_pred cCCcEEEEEEEEEEEEe-CCCceEEEEEEEecCch
Q psy8265 346 NDGGWQWLQTSSRLVYK-NSKPDFVISTHRPLMEE 379 (630)
Q Consensus 346 KdGswVWVeTsa~li~~-nGkpe~IVgt~rdISEr 379 (630)
+|. |+.....++++ +|+..++|++.+||||+
T Consensus 90 -~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 90 -GGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp -TTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred -CCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 555 44567777776 78899999999999984
No 64
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=97.75 E-value=9.9e-05 Score=72.40 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=67.0
Q ss_pred eeEEeeccCceeeeecccccccc------------CCChhhhccCcccceeccccHHHHHHHHHHHHhcCC-ceeeEEEE
Q psy8265 277 MFKSKHKLDLSLVSMDQRGKMLL------------GYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGA-SGMIAYRF 343 (630)
Q Consensus 277 ~FiTRhslDGkftyVDprv~~LL------------GYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGq-s~s~eYRf 343 (630)
.-+...+.||+|+|+|+++..++ ||.++|++|+++.+++...+ . .+.+++... ....+++
T Consensus 33 ~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~- 105 (233)
T 3vol_A 33 ANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPA--H----QRHLLANLTGVHKAELN- 105 (233)
T ss_dssp SEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSSHH--H----HHHHHHTCCSCEEEEEE-
T ss_pred CcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCCHH--H----HHHHHHhcccceeEEEE-
Confidence 33455688999999999999988 89999999999888764321 1 122233222 2233333
Q ss_pred EecCCcEEEEEEEEEEEEe-CCCceEEEEEEEecCchhh
Q psy8265 344 QTNDGGWQWLQTSSRLVYK-NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 344 rtKdGswVWVeTsa~li~~-nGkpe~IVgt~rdISErE~ 381 (630)
.+|. |+.....++++ +|++.++|++.+|||+++.
T Consensus 106 --~~g~--~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~ 140 (233)
T 3vol_A 106 --LGGR--RFSLDVVPVFNDANERLGSAVQWTDRTEEHR 140 (233)
T ss_dssp --ETTE--EEEEEEEEEECTTCCEEEEEEEEEECHHHHH
T ss_pred --ECCE--EEEEEEEEEECCCCCEEEEEEEEehhhHHHH
Confidence 3564 66778888886 7899999999999999764
No 65
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=97.53 E-value=0.00043 Score=73.03 Aligned_cols=97 Identities=4% Similarity=-0.064 Sum_probs=72.4
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSR 358 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~ 358 (630)
+.-.+.+|+|+++|++ ..++ +.+++++|+++.+++.+.....+ ..+.+.+++|+.....+.+. ++| .|+..+..
T Consensus 252 IivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~~~-~~l~~~l~~g~~~~~~~~~~-~~g--~~v~v~~~ 325 (369)
T 3cax_A 252 VTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVYVV-NKILKAFKEGRKKEATFWLR-LRE--KYVYIKYV 325 (369)
T ss_dssp EEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHHHH-HHHHHHHHHTSCSCEEEEEE-ETT--EEEEEEEE
T ss_pred EEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHHHH-HHHHHHHHcCCceEEEEEEe-eCC--EEEEEEEE
Confidence 4456889999999999 9999 99999999999987554444333 34455566777655555443 456 46677777
Q ss_pred EEEe-CCCceEEEEEEEecCchhh
Q psy8265 359 LVYK-NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 359 li~~-nGkpe~IVgt~rdISErE~ 381 (630)
++++ +|+..++|++.+|||+.+.
T Consensus 326 PI~d~~G~~~G~v~v~~DITe~~~ 349 (369)
T 3cax_A 326 PLFNEKGEYIGTLEMTMDIAPYKK 349 (369)
T ss_dssp EEECTTSCEEEEEEEEEECHHHHT
T ss_pred EEECCCCCEEEEEEEEEcCHHHHH
Confidence 8876 7899999999999998653
No 66
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=97.50 E-value=1.8e-05 Score=64.96 Aligned_cols=86 Identities=20% Similarity=0.084 Sum_probs=61.9
Q ss_pred EeeccCceeeeeccccccccCC---ChhhhccCcccceeccccHHHHHHHHHHHHhcCCce-eeEEEEEecCCcEEEEEE
Q psy8265 280 SKHKLDLSLVSMDQRGKMLLGY---SDTELANMGGYDLVHYDDLAYVASAHQELLKTGASG-MIAYRFQTNDGGWQWLQT 355 (630)
Q Consensus 280 TRhslDGkftyVDprv~~LLGY---spEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~-s~eYRfrtKdGswVWVeT 355 (630)
...+.+|+++++|+++..++|| .+++++|+++.+++++++ +.+.++.+... ...+ ..+|. |+..
T Consensus 29 ~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~--~~~~ 96 (118)
T 2w0n_A 29 VAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPRRDEEI---TIKDR--LLLI 96 (118)
T ss_dssp EEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCCCCCCE---ESSSC--EECC
T ss_pred EEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCceeccEEE---EECCE--EEEE
Confidence 3457899999999999999998 789999999999887764 23344555432 1122 24564 5555
Q ss_pred EEEEEEeCCCceEEEEEEEecC
Q psy8265 356 SSRLVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 356 sa~li~~nGkpe~IVgt~rdIS 377 (630)
...++.++|+..+++++.+|||
T Consensus 97 ~~~p~~~~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 97 NTVPVRSNGVIIGAISTFRDKT 118 (118)
T ss_dssp CEECCCCSSCCCCEEECCCCCC
T ss_pred eeceeeeCCEEEEEEEEEEeCC
Confidence 6666656777778888888886
No 67
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.46 E-value=5.8e-05 Score=76.10 Aligned_cols=96 Identities=11% Similarity=0.139 Sum_probs=67.4
Q ss_pred eEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEE
Q psy8265 278 FKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357 (630)
Q Consensus 278 FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa 357 (630)
-+...+.||+|+++|+++..++||.++|++|+++.++.++++... ....++..+..... +. ..++..|+...+
T Consensus 20 ~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~ 92 (349)
T 3a0r_A 20 AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGS---VAESVFENKEPVFL--NF--YKFGERYFNIRF 92 (349)
T ss_dssp EEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTHHHH---HHHHHHHHCCCCEE--EC--CCBTTBCCEEEE
T ss_pred eEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhHHHH---HHHHHHhcCCceee--cc--cccCceEEEEEE
Confidence 345568899999999999999999999999999999866665433 33444555543222 11 222334666667
Q ss_pred EEEEe-CCC-ceEEEEEEEecCchh
Q psy8265 358 RLVYK-NSK-PDFVISTHRPLMEEE 380 (630)
Q Consensus 358 ~li~~-nGk-pe~IVgt~rdISErE 380 (630)
.++.+ ++. ..+++++.+|||+++
T Consensus 93 ~~~~~~~~~~~~g~~~~~~DiTe~~ 117 (349)
T 3a0r_A 93 SPFRNAKTQLLEGVIITIDDVTELY 117 (349)
T ss_dssp EEECCTTTTSSCEEEEEEECCSTTT
T ss_pred EEEEcCCCceeeEEEEEEEechHHH
Confidence 77665 344 368999999999975
No 68
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=97.08 E-value=0.0014 Score=60.38 Aligned_cols=90 Identities=7% Similarity=-0.034 Sum_probs=66.1
Q ss_pred eEEeeccCceeeeeccccccccCCChhhhccCcccceeccc-cHHHHHHHHHHHHhcCCce-eeEEEEEecCCcEEEEEE
Q psy8265 278 FKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYD-DLAYVASAHQELLKTGASG-MIAYRFQTNDGGWQWLQT 355 (630)
Q Consensus 278 FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPD-Dl~~V~eah~~lLkkGqs~-s~eYRfrtKdGswVWVeT 355 (630)
=+...+.||+|+++|..+..+.||+++|++|+++++.+.|. ....+...+++.+++|... ...|.+ +++|..++|..
T Consensus 34 GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~l~~~~~yv~-~~~~~p~~v~i 112 (129)
T 1mzu_A 34 GAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVF-DFQMAPVRVQI 112 (129)
T ss_dssp EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEE-ECSSCEEEEEE
T ss_pred eEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEE-cCCCCEEEEEE
Confidence 35567899999999999999999999999999999977775 4556677778878878742 334443 77888777776
Q ss_pred EEEEEEeCCCceEE
Q psy8265 356 SSRLVYKNSKPDFV 369 (630)
Q Consensus 356 sa~li~~nGkpe~I 369 (630)
+.... .++...+|
T Consensus 113 ~l~~~-~~~~~~~i 125 (129)
T 1mzu_A 113 RMQNA-GVPDRYWI 125 (129)
T ss_dssp EEEEC-SSTTEEEE
T ss_pred EEEEc-CCCCEEEE
Confidence 65431 14444444
No 69
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=97.01 E-value=0.0014 Score=60.01 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=65.7
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccc-cHHHHHHHHHHHHhcCCce-eeEEEEEecCCcEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYD-DLAYVASAHQELLKTGASG-MIAYRFQTNDGGWQWLQTS 356 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPD-Dl~~V~eah~~lLkkGqs~-s~eYRfrtKdGswVWVeTs 356 (630)
+...+.||+|+++|..+..+.||+++|++|+++++.+.|. ....+...+.+.+++|... ...|.+ +++|+.++|..+
T Consensus 30 ii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v~-~~~~~p~~v~i~ 108 (125)
T 1nwz_A 30 AIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTF-DYQMTPTKVKVH 108 (125)
T ss_dssp EEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEE-CTTSCCEEEEEE
T ss_pred EEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEE-cCCCCEEEEEEE
Confidence 5567899999999999999999999999999999977775 4556677777777778742 333433 888887777766
Q ss_pred EEEEEeCCCceEE
Q psy8265 357 SRLVYKNSKPDFV 369 (630)
Q Consensus 357 a~li~~nGkpe~I 369 (630)
.... .++...+|
T Consensus 109 l~~~-~~~~~~~i 120 (125)
T 1nwz_A 109 MKKA-LSGDSYWV 120 (125)
T ss_dssp EEEC-SSSSEEEE
T ss_pred EEEc-CCCCEEEE
Confidence 5431 14444444
No 70
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=96.69 E-value=0.00047 Score=57.54 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=56.0
Q ss_pred ccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCCCC---ccccCC---CCCCeEEe-eeeeeEEEeec
Q psy8265 172 PILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSPKS---YYQSYN---ENGPSERL-DIRGRIKILHG 244 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~k~---~~c~ld---~rSfF~RM-k~rGRlKvLhg 244 (630)
+.+.+|+|+|+|+++.++|||+++|| +|+++++++||.+.... +...+. ...+-+|+ ...|.+.++..
T Consensus 14 ~~d~~g~i~~~n~~~~~~~Gy~~~el-----~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~ 88 (117)
T 3f1p_A 14 EHSMDMKFTYCDDRITELIGYHPEEL-----LGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLET 88 (117)
T ss_dssp EECTTCBEEEECTHHHHHHCCCHHHH-----TTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEEEEE
T ss_pred EECCCceEEEECcChhhhhCCCHHHH-----cCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEEEEE
Confidence 66899999999999999999999995 89999999999754320 000000 01122333 33455554443
Q ss_pred cccc---C-CCCCeEEEEEEeeCCC
Q psy8265 245 QNRK---L-EEPPLALFAICTPFGP 265 (630)
Q Consensus 245 ~~rk---s-e~p~lcLVAIarPL~~ 265 (630)
.... . .....+++++.+.|..
T Consensus 89 ~~~~~~d~~~g~~~~iv~~~~DITe 113 (117)
T 3f1p_A 89 QGTVIYNPRNLQPQCIMCVNYVLSE 113 (117)
T ss_dssp EEEEEEETTTTEEEEEEEEEEECSC
T ss_pred eeEEEECCCCCCceEEEEEeeeccc
Confidence 2211 1 1223478888888864
No 71
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=96.65 E-value=0.00066 Score=62.55 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=61.8
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCC-c-eeeEEEEEecCCcEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGA-S-GMIAYRFQTNDGGWQWLQTS 356 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGq-s-~s~eYRfrtKdGswVWVeTs 356 (630)
+.-.+.+|+++++|+++..++|+..++++|+++.+++++.+... .+..+. . ....+++ +|.++++ +
T Consensus 93 vi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~g~~~~~--~ 160 (190)
T 2jhe_A 93 VLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLR-------WLESEPQDSHNEHVVI---NGQNFLM--E 160 (190)
T ss_dssp EEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCHHH-------HHHTCCCSCEEEEEEE---TTEEEEE--E
T ss_pred EEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCHHH-------HHhcCCCCCcceEEEE---CCeEEEE--E
Confidence 44568899999999999999999999999999999988766432 334443 2 2233333 6765544 4
Q ss_pred EEEEEe-CCC----ceEEEEEEEecCchh
Q psy8265 357 SRLVYK-NSK----PDFVISTHRPLMEEE 380 (630)
Q Consensus 357 a~li~~-nGk----pe~IVgt~rdISErE 380 (630)
..++.. +++ ..++|++.+|||+.+
T Consensus 161 ~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 161 ITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp EEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred EEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 555543 333 456677778888753
No 72
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=96.56 E-value=0.001 Score=55.52 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=36.3
Q ss_pred ccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 172 PILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
+.+.+|+|+|+|+++.++|||+++| ++|+++.+++||.+.
T Consensus 18 ~~d~~g~i~~~N~~~~~~~G~~~~e-----l~g~~~~~~~~p~d~ 57 (121)
T 2kdk_A 18 RFAVNGKFVYVDQRATAILGYLPQE-----LLGTSCYEYFHQDDH 57 (121)
T ss_dssp EECTTSBEEEECTHHHHHTCCCTTT-----SBTSBTTTTBCSSSH
T ss_pred EECCCeeEEEEChhHHHHHCCCHHH-----HcCCcHHHeeCHHHH
Confidence 6688999999999999999999999 489999999999754
No 73
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=95.72 E-value=0.0048 Score=51.32 Aligned_cols=40 Identities=10% Similarity=-0.078 Sum_probs=35.6
Q ss_pred CccCCC-CcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 171 SPILPN-GHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 171 ~Vls~d-GkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
.+++.+ |+|+|+++...++|||+.+| ++|+++.+++++..
T Consensus 12 ~~~d~~~g~I~~~N~aa~~l~G~~~~e-----l~g~~~~~l~~~~~ 52 (114)
T 1ll8_A 12 FTVDAKTTEILVANDKACGLLGYSSQD-----LIGQKLTQFFLRSD 52 (114)
T ss_dssp EEEETTTCBEEEECTTHHHHHTCCTTT-----TTTSBGGGGSSCTT
T ss_pred EEEECCCCeEEEehHHHHHHhCCCHHH-----HcCCCHHHhcCcch
Confidence 356888 99999999999999999999 48999999998863
No 74
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=94.27 E-value=0.0031 Score=65.03 Aligned_cols=106 Identities=13% Similarity=0.009 Sum_probs=66.6
Q ss_pred EEeeccCceeeeeccccccccC---CChhhhccCcccceeccc---cHH--HHHHHHHHHHhc-CCceeeEEEEEecCCc
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLG---YSDTELANMGGYDLVHYD---DLA--YVASAHQELLKT-GASGMIAYRFQTNDGG 349 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLG---YspEELlG~S~ydlIHPD---Dl~--~V~eah~~lLkk-Gqs~s~eYRfrtKdGs 349 (630)
+...+.+|+|+++|+++..++| +. ++++|+++.+++... ... .+.+.+..++.+ +.....+.. .+|
T Consensus 183 IivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ei~---~~~- 257 (305)
T 2ykf_A 183 FIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRMEVD---AGG- 257 (305)
Confidence 4556888999999999999975 54 789999999887543 111 233333334433 322222222 123
Q ss_pred EEEEEEEEEEEEeCCCceEEEEEEEecCchhh-HHHHhhhcc
Q psy8265 350 WQWLQTSSRLVYKNSKPDFVISTHRPLMEEEG-RDLLGKRTM 390 (630)
Q Consensus 350 wVWVeTsa~li~~nGkpe~IVgt~rdISErE~-~E~L~~r~~ 390 (630)
.|+..+..++.++|+..++|.+.+||||.+. ++.|+..+.
T Consensus 258 -~~l~v~~~Pi~~~g~~~G~Vvv~rDITE~~~lE~eL~~K~~ 298 (305)
T 2ykf_A 258 -ATVLLRTLPLVVAGRNVGAAILIRDVTEVKRRDRALISKDA 298 (305)
Confidence 4556666666666777788999999999653 444544333
No 75
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=94.77 E-value=0.0088 Score=51.04 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=37.9
Q ss_pred CCCCCC-CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCC
Q psy8265 165 SRSPPA-SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPV 214 (630)
Q Consensus 165 ~~~~~~-~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ 214 (630)
...+++ .+++.+|+|+|+++...+++||+.+|| +|+++.+++++.
T Consensus 23 ~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~el-----iG~~~~~l~~~~ 68 (130)
T 1d06_A 23 DTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEV-----IGQNLRILMPEP 68 (130)
T ss_dssp TTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHH-----TTSBGGGGSCTT
T ss_pred hhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHH-----cCCcHHHHCCch
Confidence 345554 467899999999999999999999994 899999988775
No 76
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=94.63 E-value=0.0095 Score=49.86 Aligned_cols=39 Identities=23% Similarity=0.081 Sum_probs=34.7
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPV 214 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ 214 (630)
.+++.+|+|+|+|+...+++||+.+|| +|+++.+++++.
T Consensus 7 ~~~d~~g~i~~~N~a~~~l~G~~~~el-----~G~~~~~l~~~~ 45 (119)
T 2vv6_A 7 IVIDGHGIIQLFSTAAERLFGWSELEA-----IGQNVNILMPEP 45 (119)
T ss_dssp EEEETTSBEEEECHHHHHHHCCCHHHH-----TTSBGGGGSCTT
T ss_pred EEECCCCeEEEEhHHHHHHhCCCHHHH-----cCCCHHHhCCch
Confidence 467899999999999999999999994 899998888764
No 77
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=94.48 E-value=0.011 Score=52.69 Aligned_cols=45 Identities=20% Similarity=0.055 Sum_probs=38.3
Q ss_pred CCCC-CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 167 SPPA-SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 167 ~~~~-~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
.+++ .+++.+|+|+|+++...++|||+.+|| +|+++.+++++...
T Consensus 16 ~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el-----~G~~~~~l~~~~~~ 61 (129)
T 3mfx_A 16 LTEAMILVNANGFIRSCNQRSAELLDCPQVSL-----KGQDWRNFLTEHHQ 61 (129)
T ss_dssp CSSEEEEEETTSBEEEECHHHHHHTTSCHHHH-----TTSBGGGGBCTTCC
T ss_pred CCceEEEECCCCEEEeEhHHHHHHHCcCHHHH-----cCCcHHHHcChHhH
Confidence 3443 467999999999999999999999994 89999999988654
No 78
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=93.92 E-value=0.022 Score=47.81 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=35.0
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
.+++.+|+|+|+++...+++||+.+|| +|+++.++.++..
T Consensus 19 ~~~d~~g~i~~~N~a~~~~~G~~~~el-----ig~~~~~l~~~~~ 58 (120)
T 2gj3_A 19 SITDLKANILYANRAFRTITGYGSEEV-----LGKNESILSNGTT 58 (120)
T ss_dssp EEECTTCBEEEECHHHHHHHCCCTTGG-----GGCBGGGGCCTTS
T ss_pred EEECCCCCEEeehHHHHHHHCcCHHHH-----cCCCHHHcCCCCC
Confidence 467899999999999999999999994 8999988877654
No 79
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=93.75 E-value=0.031 Score=46.35 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=37.2
Q ss_pred CCCCCC-CccCC---CCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 165 SRSPPA-SPILP---NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 165 ~~~~~~-~Vls~---dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
...++. .+++. +|+|+|+|+...+++|++.+|+ +|+++.++.++..
T Consensus 4 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~-----~g~~~~~~~~~~~ 53 (128)
T 3t50_A 4 EFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEV-----MGRNCRFLQGHGT 53 (128)
T ss_dssp CCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHH-----TTSCGGGGCCTTS
T ss_pred ccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHH-----cCCCHhhhcCCcc
Confidence 344444 35677 8999999999999999999884 8999988888764
No 80
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=93.50 E-value=0.0098 Score=49.35 Aligned_cols=90 Identities=13% Similarity=-0.027 Sum_probs=53.4
Q ss_pred CCCcEEeccccchhhcCCChhhhhhhccccC-ccccCCCCCCCCCC---cc-ccCCCCCC--eEEe-eeeeeEEEeeccc
Q psy8265 175 PNGHINYPSQEIKKYNGDPLKSLAEMNTIGE-NKWKESPPVVSPKS---YY-QSYNENGP--SERL-DIRGRIKILHGQN 246 (630)
Q Consensus 175 ~dGkIlYVSEnVs~~LGysqeEL~q~~liGq-Si~D~vHP~ls~k~---~~-c~ld~rSf--F~RM-k~rGRlKvLhg~~ 246 (630)
.+|+|+|+|+.+.++|||+++|+ +|. .+.+++||.+..+- +. +......+ -.|+ ...|.+++++..+
T Consensus 12 ~~~~~~~~n~~~~~l~G~~~~e~-----~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~ 86 (115)
T 3h9w_A 12 QTMAFEYIGPQIEALLGWPQGSW-----KSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYVWIRDVV 86 (115)
T ss_dssp TTTEEEEECTHHHHHHCSCGGGC-----CBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCcEEEEChhHHHHhCCChHHc-----cCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCEEEEEEEE
Confidence 68999999999999999999995 553 35688999754320 11 11111111 1233 2346666554332
Q ss_pred c--cC-CCCCeEEEEEEeeCCCCCCc
Q psy8265 247 R--KL-EEPPLALFAICTPFGPPSLL 269 (630)
Q Consensus 247 r--ks-e~p~lcLVAIarPL~~ps~~ 269 (630)
. .. ......+++++..+..+...
T Consensus 87 ~~~~d~~G~~~~~~G~~~Dit~~k~~ 112 (115)
T 3h9w_A 87 HVVRDDSGEVEALIGFMFDISLEHHH 112 (115)
T ss_dssp EEEECTTSCEEEEEEEEEECGGGGC-
T ss_pred EEEECCCCCEEEEEEEEeccCccccc
Confidence 2 12 23344788999988765443
No 81
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=93.43 E-value=0.027 Score=51.43 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=38.7
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSPK 218 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~k 218 (630)
.|++.+|+|+|.+....++.|++.+| ++|+++|+.+.|+....
T Consensus 31 i~lD~~g~I~~~N~~~e~~sG~~~~e-----viGk~~f~~~~~~~~~~ 73 (125)
T 1nwz_A 31 IQLDGDGNILQYNAAEGDITGRDPKQ-----VIGKNFFKDVAPCTDSP 73 (125)
T ss_dssp EEEETTCBEEEECHHHHHHHCCCHHH-----HTTSBCCCCCCGGGCST
T ss_pred EEECCCCEEEEEHHHHHHHhCCCHHH-----HcCCchhhhccchhccc
Confidence 47899999999999999999999999 59999999999986544
No 82
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=93.36 E-value=0.021 Score=47.03 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=36.7
Q ss_pred CCCCCCCC-CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 163 NPSRSPPA-SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 163 ll~~~~~~-~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
++...++. .+++.+|+|+|+++...+++|++.+| ++|+++.++.++
T Consensus 24 i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~-----~~g~~~~~~~~~ 70 (125)
T 3fc7_A 24 LVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDT-----LVGQQLSAVMDS 70 (125)
T ss_dssp --CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHH-----HTTSBGGGSSCH
T ss_pred HHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHH-----HcCccHHHhCCH
Confidence 33444554 46799999999999999999999988 489999998844
No 83
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=93.31 E-value=0.028 Score=45.59 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=32.8
Q ss_pred ccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 172 PILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
+++.+|+|+|+++...+++||+.+|| +|.++.++.++
T Consensus 28 ~~d~~g~i~~~N~~~~~l~G~~~~el-----~g~~~~~~~~~ 64 (118)
T 3olo_A 28 CLGDNWQFLYVNDATCRMTEYSREQL-----LSMNLQDIDVD 64 (118)
T ss_dssp EECTTSBEEEECHHHHHHHCCCHHHH-----TTCBGGGTBTT
T ss_pred EECCCCcEEEEHHHHHHHHCCCHHHH-----hCCChhhcccc
Confidence 56899999999999999999999995 89998887644
No 84
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=93.27 E-value=0.037 Score=44.26 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=35.2
Q ss_pred CccCC---CCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 171 SPILP---NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 171 ~Vls~---dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
.+++. +|+|+|+|+...+++|++.+|+ +|+++.++.|+...
T Consensus 11 ~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~-----~g~~~~~~~~~~~~ 54 (115)
T 4eet_B 11 VITDPRLPDNPIIFASDGFLELTEYSREEI-----LGRNARFLQGPETD 54 (115)
T ss_dssp EEECTTSTTCCEEEECHHHHHHHCCCHHHH-----TTSCGGGGCCTTSC
T ss_pred EEEcCCCCCCcEEEEcHHHHHHHCcCHHHH-----hCCCHHHhcCCCCC
Confidence 35677 9999999999999999999884 89998888887643
No 85
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=93.15 E-value=0.017 Score=48.91 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=37.0
Q ss_pred CCCCCC-CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCC
Q psy8265 165 SRSPPA-SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPV 214 (630)
Q Consensus 165 ~~~~~~-~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ 214 (630)
...++. .+++.+|+|+|+++...+++|++.+|+ +|+++.++.++.
T Consensus 19 ~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~-----~G~~~~~~~~~~ 64 (118)
T 3fg8_A 19 FQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDEL-----LGRVVTEVLPET 64 (118)
T ss_dssp SCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHH-----TTSBHHHHCGGG
T ss_pred hhCCceEEEECCCCeEEEECHHHHHHhCCCHHHH-----cCCcHHHHcCcc
Confidence 334444 467999999999999999999999884 899999887654
No 86
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=92.97 E-value=0.045 Score=50.30 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=38.7
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSPK 218 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~k 218 (630)
.|++.+|+|+|.+....++.|++.+| ++|+++|+.+.|+....
T Consensus 36 ivlD~dg~I~~~N~~~e~isG~s~ee-----viGk~~f~~~~p~~~~~ 78 (129)
T 1mzu_A 36 IQVDGSGVIHRYNRTESRLSGRIPER-----VIGRNFFTEVAPCTNIP 78 (129)
T ss_dssp EEEETTCBEEEECHHHHHHHCCCHHH-----HTTSBCCCCCCGGGCST
T ss_pred EEECCCCeEEEEHHHHHHHhCCCHHH-----HcCCchhhhccchhccc
Confidence 47899999999999999999999999 59999999999986544
No 87
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=92.86 E-value=0.039 Score=47.08 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=34.3
Q ss_pred CCCCC-CccCCCC---cEEeccccchhhcCCChhhhhhhccccCccccCCCCC
Q psy8265 166 RSPPA-SPILPNG---HINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPV 214 (630)
Q Consensus 166 ~~~~~-~Vls~dG---kIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ 214 (630)
..++. .+++.+| +|+|+|+...+++||+.+|+ +|+++..+.||.
T Consensus 7 ~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el-----~g~~~~~l~~~~ 54 (132)
T 2pr5_A 7 HVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEI-----LGKNCRFLQGKH 54 (132)
T ss_dssp CCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHH-----TTSCGGGGCCTT
T ss_pred cCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHH-----cCCChhhhCCCC
Confidence 34444 3556655 99999999999999999995 899887776664
No 88
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=92.85 E-value=0.041 Score=46.38 Aligned_cols=38 Identities=13% Similarity=-0.081 Sum_probs=32.3
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.+++.+|+|+||++...+++||+.+|| +|+++.++.++
T Consensus 25 ~~~d~~g~i~~vN~a~~~l~Gy~~~el-----~g~~~~~~~~~ 62 (117)
T 2r78_A 25 FIMDAEGHYLDVNPAICSAIGYTRDEF-----LALDWGVLSRG 62 (117)
T ss_dssp EEECTTSBEEEECHHHHHHHCCCHHHH-----TTCBTTTTTTC
T ss_pred EEECCCCCEEEecHHHHHHHCcCHHHH-----cCCCHHHhCCc
Confidence 356889999999999999999999995 79987766544
No 89
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=92.63 E-value=0.026 Score=47.09 Aligned_cols=41 Identities=17% Similarity=0.060 Sum_probs=33.6
Q ss_pred CCCCccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 168 PPASPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 168 ~~~~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
++..+++.+|+|+|+|+...+++||+.+|| +|+++.++.++
T Consensus 13 ~~~i~~~~~g~i~~~N~a~~~l~G~~~~el-----~g~~~~~~~~~ 53 (120)
T 3mqq_A 13 PIGLVLSRDRVIEDCNDELAAIFRCARADL-----IGRSFEVLYPS 53 (120)
T ss_dssp SSEEEEEETTEEEEECHHHHHHTTSCHHHH-----TTCBGGGGSSS
T ss_pred CceEEEecCCEEHHHHHHHHHHhCcCHHHh-----CCCchhhccCC
Confidence 333455789999999999999999999994 89988776554
No 90
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=92.26 E-value=0.043 Score=47.17 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=31.9
Q ss_pred CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCC
Q psy8265 175 PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPV 214 (630)
Q Consensus 175 ~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ 214 (630)
.+|+|+|+|+...+++||+.+|+ +|+++.++.+|.
T Consensus 46 ~~g~i~~~N~a~~~l~G~~~~el-----~g~~~~~l~~~~ 80 (149)
T 3d72_A 46 KDTPIVYASEAFLYMTGYSNAEV-----LGRNCRFLQSPD 80 (149)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHH-----TTSCGGGGGSTT
T ss_pred CCCcEEEECHHHHHHHCcCHHHH-----cCCChhHhCCcc
Confidence 69999999999999999999994 899998888775
No 91
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=92.21 E-value=0.058 Score=44.92 Aligned_cols=38 Identities=11% Similarity=-0.083 Sum_probs=32.6
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhcc-ccCccccCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNT-IGENKWKESP 212 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~l-iGqSi~D~vH 212 (630)
.+++.+|+|+|+++...+++||+.+|| + +|+++++++|
T Consensus 31 ~~~d~~g~i~~~N~a~~~~~G~~~~el----~g~g~~~~~~~~ 69 (126)
T 3bwl_A 31 DVLDADGTICEVNQRFCAELGYDESEV----LGRSIWEFDLMF 69 (126)
T ss_dssp EEECTTCBEEEECHHHHHHHTCCGGGT----TTSBGGGTBTTC
T ss_pred EEEcCCCCEEEEcHHHHHHhCCCHHHH----hhCCCchhhccC
Confidence 367889999999999999999999994 2 5788888877
No 92
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=91.04 E-value=0.023 Score=46.52 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=35.0
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
.+++.+|+|+|+++...+++|++.+++ +|.++.++.++..
T Consensus 13 ~~~d~~g~i~~~N~~~~~~~g~~~~~~-----~g~~~~~~~~~~~ 52 (126)
T 3mjq_A 13 LIINREGRLLYANTAVPKKLGYTHEEL-----MSMHILTITSAGK 52 (126)
T ss_dssp EEEETTSBEEEECTHHHHHHSCCHHHH-----HHSBHHHHHCTTC
T ss_pred EEEeCCCcEEEEcHHHHHHHCCCHHHH-----cCCCHHHHcCchh
Confidence 366899999999999999999999884 7999999888753
No 93
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=90.90 E-value=0.073 Score=40.37 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=31.0
Q ss_pred ccCCCCcEEeccccchhhcCCChhhhhhhccccCccccC
Q psy8265 172 PILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKE 210 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~ 210 (630)
+++.+|+|+|+++...+++|++.+|+ +|+++.++
T Consensus 7 ~~d~~g~i~~~N~~~~~l~g~~~~~~-----~g~~~~~~ 40 (96)
T 3a0s_A 7 TLSKDGRITEWNKKAEQLFGLKKENV-----LGRRLKDL 40 (96)
T ss_dssp EEETTSBEEEECHHHHHHHCCCHHHH-----TTSBGGGS
T ss_pred EEcCCCCEeehhHHHHHHhCCCHHHh-----cCCCHHHC
Confidence 67899999999999999999998884 89998887
No 94
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=90.41 E-value=0.11 Score=43.26 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=30.2
Q ss_pred CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCC
Q psy8265 175 PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPV 214 (630)
Q Consensus 175 ~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ 214 (630)
.+|+|+|+|+...+++||+.+|+ +|++...+.+|.
T Consensus 14 ~~g~i~~~N~a~~~l~Gy~~~e~-----~G~~~~~l~~~~ 48 (109)
T 1n9l_A 14 PDCPLVYASEGFYAMTGYGPDEV-----LGHNCRFLQGEG 48 (109)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHH-----TTSCGGGGCCTT
T ss_pred CCCeEEEEchHHHHHHCcCHHHH-----cCCCchhcCCCC
Confidence 47999999999999999999994 899876666664
No 95
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=89.44 E-value=0.063 Score=49.66 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=32.2
Q ss_pred cCCCCcEEeccccchhhcCCCh--hhhhhhccccCccccCCCCCCC
Q psy8265 173 ILPNGHINYPSQEIKKYNGDPL--KSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 173 ls~dGkIlYVSEnVs~~LGysq--eEL~q~~liGqSi~D~vHP~ls 216 (630)
.+.||||+||=.++. ..++.+ +|| +|+|++||+|+.+.
T Consensus 13 h~~dGKf~~vDq~~~-r~~~~~g~qdL-----lGrsiy~f~H~~D~ 52 (132)
T 1oj5_A 13 QDTTGKIISIDTSSL-RAAGRTGWEDL-----VRKCIYAFFQPQGR 52 (132)
T ss_dssp ECTTCCEEEEECHHH-HTTCCSCHHHH-----HHHHHHHHTSCBTT
T ss_pred ecCCCcEEEEecccc-cccccccHHHH-----HHHHHHHHhCcccc
Confidence 378999999999876 477777 884 89999999999974
No 96
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.35 E-value=0.071 Score=43.73 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=33.4
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.+++.+|+|+|+++...+++|++.+|+ +|+++.++.++
T Consensus 21 ~~~D~~g~I~~~N~aa~~l~g~~~~~~-----~g~~~~~~~~~ 58 (115)
T 3b33_A 21 LILDDGLAIRYANPAAELLFSQSAKRI-----VEQSLSQLIQH 58 (115)
T ss_dssp EEECTTCBEEEECHHHHHHTTSCHHHH-----TTCBHHHHCSE
T ss_pred EEECCCCcEEEECHHHHHHhCCCHHHH-----hCCCHHHHhCc
Confidence 367999999999999999999998884 89999888764
No 97
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=89.17 E-value=0.13 Score=45.52 Aligned_cols=41 Identities=7% Similarity=-0.049 Sum_probs=35.3
Q ss_pred CccCCC---CcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 171 SPILPN---GHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 171 ~Vls~d---GkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
.+++.+ |+|+|+|+...+++||+.+|+ +|+++.++.||...
T Consensus 21 ~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~-----~g~~~~~~~~~~~~ 64 (176)
T 4hia_A 21 TLVDMSLPEQPVVLANPPFLRMTGYTEGQI-----LGFNCRFLQRGDEN 64 (176)
T ss_dssp EEEETTSTTCCEEEECHHHHHHHTCCHHHH-----TTSCGGGGCCTTCC
T ss_pred EEEecCCCCCcEEEECHHHHHHHCcCHHHH-----cCCCcceeeCCCCC
Confidence 356777 999999999999999999994 89999888888643
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=88.42 E-value=0.13 Score=51.44 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=38.1
Q ss_pred CCCCC-CccCC---CCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 166 RSPPA-SPILP---NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 166 ~~~~~-~Vls~---dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
..+++ .+++. +|+|+|+++...+++||+.+|+ +|+++.++.||...
T Consensus 19 ~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el-----~G~~~~~l~~~~~~ 68 (332)
T 2wkq_A 19 RIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEI-----LGRNARFLQGPETD 68 (332)
T ss_dssp GCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHH-----TTSCGGGGCCTTCC
T ss_pred cCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHH-----cCCCchhhcCCCCC
Confidence 34444 35677 9999999999999999999994 89999999987643
No 99
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=88.06 E-value=0.17 Score=41.32 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=35.2
Q ss_pred CccCC---CCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 171 SPILP---NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 171 ~Vls~---dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
.+++. +|+|+|+++...+++|++.+++ +|+++.++.++...
T Consensus 16 ~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~-----~g~~~~~~~~~~~~ 59 (146)
T 2v0u_A 16 VITDPRLPDNPIIFASDSFLQLTEYSREEI-----LGRNCRFLQGPETD 59 (146)
T ss_dssp EEECTTSTTCCEEEECHHHHHHHCCCHHHH-----TTSCGGGGCCTTSC
T ss_pred EEEcCCCCCceEEEEcHHHHHHHCcCHHHH-----cCCCHHHhcCCcCC
Confidence 35677 9999999999999999998884 89999998888643
No 100
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=87.73 E-value=0.17 Score=40.70 Aligned_cols=39 Identities=8% Similarity=0.000 Sum_probs=33.5
Q ss_pred CccCCCCcEEeccccchhhcCC---ChhhhhhhccccCccccCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGD---PLKSLAEMNTIGENKWKESPPV 214 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGy---sqeEL~q~~liGqSi~D~vHP~ 214 (630)
.+++.+|+|+|+++...+++|+ +.++ ++|+++.++.++.
T Consensus 29 ~~~d~~g~i~~~N~~~~~~~g~~~~~~~~-----~~g~~~~~~~~~~ 70 (118)
T 2w0n_A 29 VAVDDRGEVTLINDAAQELLNYRKSQDDE-----KLSTLSHSWSQVV 70 (118)
T ss_dssp EEEBTTTBCCCBCHHHHHHHCSCTTTTTS-----SCCCTTCCCSCTH
T ss_pred EEECCCCcEeehhHHHHHHhCCCccChhh-----hhccCcccccCch
Confidence 4779999999999999999997 6666 5899998887664
No 101
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=87.67 E-value=0.16 Score=53.43 Aligned_cols=47 Identities=13% Similarity=0.007 Sum_probs=38.7
Q ss_pred eeeeccCCCCCCCCCCccCC-CCcEEeccccchhhcCCChhhhhhhccccCccccCCCCC
Q psy8265 156 TVLMWGSNPSRSPPASPILP-NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPV 214 (630)
Q Consensus 156 ~~L~~gfll~~~~~~~Vls~-dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ 214 (630)
.+.-.|+|+ |++. +|+|+++|+|+.++||++.++| +|+++.++.+|.
T Consensus 38 ~IQp~G~Ll-------~~~~~~~~i~~~S~N~~~~lg~~~~~l-----lG~~l~~ll~~~ 85 (337)
T 2ool_A 38 AIQPHGYLF-------VVSETDLRIASVSANVEDLLRQPPASL-----LNVPIAHYLTAA 85 (337)
T ss_dssp EECTTSEEE-------EECTTTCBEEEEETTHHHHHSSCGGGG-----TTCBGGGGBCHH
T ss_pred ccCCCEEEE-------EEECCCCEEEEEehhHHHHHCcCHHHH-----cCCCHHHHcCHH
Confidence 333468888 6655 5899999999999999999994 899999988874
No 102
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=87.51 E-value=0.14 Score=40.90 Aligned_cols=39 Identities=10% Similarity=-0.000 Sum_probs=33.8
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
.+++.+|+|+|+|+...+++|++.+| ++|+++.++. |.+
T Consensus 17 ~~~d~~g~i~~~N~~~~~~~g~~~~~-----~~g~~~~~~~-~~~ 55 (114)
T 3luq_A 17 AMFDREMRYLAVSRRWREDYGLGDGD-----ILGMSHYDIF-PEI 55 (114)
T ss_dssp EEEETTCBEEEECHHHHHHTTCCSSC-----CTTCBHHHHC-TTC
T ss_pred EEEcCCcEEEEECHHHHHHHCCCHHH-----HcCCcHHHHC-Ccc
Confidence 36789999999999999999999888 5899998887 543
No 103
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=86.96 E-value=0.49 Score=49.82 Aligned_cols=68 Identities=18% Similarity=0.031 Sum_probs=49.3
Q ss_pred ccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCC---ceeeEEEEEec-CCcEEEEE
Q psy8265 283 KLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGA---SGMIAYRFQTN-DGGWQWLQ 354 (630)
Q Consensus 283 slDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGq---s~s~eYRfrtK-dGswVWVe 354 (630)
..+++++.++..+..++|+.+++++|+++.+++++++...+.+.+ ..+. .....+++... +|...|+.
T Consensus 50 ~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~l----~~~~~~~~~p~~~~~~~~~~~~~f~~~ 121 (337)
T 2ool_A 50 ETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHAL----HGGDPAAINPIRLDVVTPDGERAFNGI 121 (337)
T ss_dssp TTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHHH----CC----CCCSEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHHHH----hcCCccccCcEEEEEeccCCCeEEEEE
Confidence 346899999999999999999999999999999998887766543 2222 23345666654 24445543
No 104
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=86.77 E-value=0.23 Score=39.42 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=34.0
Q ss_pred ccC---CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 172 PIL---PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 172 Vls---~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
+++ .+|+|+|+++...+++|++.++ ++|+++.++.++..
T Consensus 21 ~~d~~d~~~~i~~~N~~~~~~~g~~~~~-----~~g~~~~~~~~~~~ 62 (130)
T 2z6d_A 21 VSDATQPHCPIVYASSGFFTMTGYSSKE-----IVGRNCRFLQGPDT 62 (130)
T ss_dssp EEETTSTTCCEEEECHHHHHHHCCCHHH-----HTTSCGGGGCCTTS
T ss_pred eeeccCCCCcEEEecHHHHHHhCcCHHH-----HcCCChhhccCCCC
Confidence 456 8999999999999999999888 48999998888754
No 105
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=86.59 E-value=0.23 Score=42.95 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=34.2
Q ss_pred ccCC---CCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 172 PILP---NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 172 Vls~---dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
+++. +|+|+|+|+...+++|++.+| ++|+++.++.|+...
T Consensus 50 ~~d~~~~~g~i~~~N~~~~~l~G~~~~e-----~~g~~~~~l~~~~~~ 92 (166)
T 3ue6_A 50 ITDASLPDNPIVYASRGFLTLTGYSLDQ-----ILGRNCRFLQGPETD 92 (166)
T ss_dssp EEETTSTTCCEEEECHHHHHHHCCCHHH-----HTTSCGGGGCCTTSC
T ss_pred EEEccCCCCcEEEECHHHHHHhCcCHHH-----HcCCCHhheeCCCCC
Confidence 5566 799999999999999999988 489998888887643
No 106
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=86.45 E-value=0.18 Score=39.82 Aligned_cols=39 Identities=15% Similarity=-0.022 Sum_probs=32.6
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPV 214 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ 214 (630)
.+++.+|+|+|+++...+++|++.+++ +|.++..+.++.
T Consensus 21 ~~~d~~~~i~~~N~~~~~~~g~~~~~~-----~g~~~~~~~~~~ 59 (124)
T 3lyx_A 21 VVTDLQGFIIDWNKGSETLYGYSKEQA-----IGQPVNMLHVPG 59 (124)
T ss_dssp EEEETTCBEEEECHHHHHHHCCCHHHH-----TTSBGGGGSCTT
T ss_pred EEECCCCcEeehhhHHHHHhCCCHHHH-----cCCCHHHhcCcc
Confidence 367899999999999999999998884 899888555543
No 107
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=85.70 E-value=0.33 Score=46.61 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=35.6
Q ss_pred CccCC---CCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 171 SPILP---NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 171 ~Vls~---dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
.+++. +|+|+|+|+...+++||+.+| ++|+++.++.||...
T Consensus 77 ~~~d~~~~~g~i~~~N~a~~~l~G~~~~e-----l~g~~~~~l~~~~~~ 120 (258)
T 3p7n_A 77 VVSDPRLADNPLIAINQAFTDLTGYSEEE-----CVGRNCRFLAGSGTE 120 (258)
T ss_dssp EEECTTSTTCCEEEECHHHHHHHCCCGGG-----TTTSCGGGGCCTTCC
T ss_pred EEEcCCCCCCcEEEEhHHHHHHcCCCHHH-----HCCCChhhccCCCCc
Confidence 46688 889999999999999999999 489999888888643
No 108
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=85.41 E-value=0.18 Score=40.64 Aligned_cols=40 Identities=3% Similarity=-0.261 Sum_probs=33.3
Q ss_pred ccCCCCcEEeccccchhhcCCChhhhhhhccccCc--cccCCCCCCC
Q psy8265 172 PILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGEN--KWKESPPVVS 216 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqS--i~D~vHP~ls 216 (630)
+.+.+|+++|+|++..+++||+.+|+ +|.. +.+++||.+.
T Consensus 19 ~~d~~~~~~~~n~~~~~~~G~~~~~~-----~~~~~~~~~~i~p~d~ 60 (118)
T 3icy_A 19 HLDVSGQATIRFRPPAFLKTLVSEHA-----GTTRLNTLSMIHHDDR 60 (118)
T ss_dssp EECTTSCEEECCCCCGGGGGGEEEET-----TEEEEGGGGGBCGGGH
T ss_pred EEEcCCCceEEechhHhhcCCCHHHc-----cCChhHHHHHcCHHHH
Confidence 56889999999999999999998884 5553 4789999754
No 109
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=84.07 E-value=0.39 Score=36.91 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=27.6
Q ss_pred CCcEEeccccchhhcCCChhhhhhhccccCc-cccCCCC
Q psy8265 176 NGHINYPSQEIKKYNGDPLKSLAEMNTIGEN-KWKESPP 213 (630)
Q Consensus 176 dGkIlYVSEnVs~~LGysqeEL~q~~liGqS-i~D~vHP 213 (630)
+|+|+|+++...+++|++.+|+ +|++ +.+++++
T Consensus 13 ~g~i~~~N~~~~~~~g~~~~~~-----~g~~~~~~~~~~ 46 (110)
T 1byw_A 13 NCAVIYCNDGFCELCGYSRAEV-----MQRPCTCDFLHG 46 (110)
T ss_dssp SCBEEEECHHHHHHHTCCHHHH-----TTSBTTCGGGCC
T ss_pred CCcEEEECHHHHHHhCCCHHHH-----ccCCCccccccC
Confidence 6999999999999999999884 8988 3555544
No 110
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=84.04 E-value=0.4 Score=41.01 Aligned_cols=40 Identities=20% Similarity=0.122 Sum_probs=34.9
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
.+++.+|+|+|+++...+++|++.++ ++|+.+.++.++..
T Consensus 54 ~~~d~~g~i~~~N~~~~~l~g~~~~~-----~~g~~~~~~~~~~~ 93 (167)
T 1v9y_A 54 VLINENDEVMFFNPAAEKLWGYKREE-----VIGNNIDMLIPRDL 93 (167)
T ss_dssp EEECTTSBEEEECHHHHHHHSCCGGG-----TTTSBGGGGSCGGG
T ss_pred EEECCCCcEEEECHHHHHHhCCCHHH-----HcCCChhhccCccc
Confidence 46789999999999999999999888 48999998887754
No 111
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=83.87 E-value=0.31 Score=41.18 Aligned_cols=37 Identities=14% Similarity=-0.032 Sum_probs=31.3
Q ss_pred CccCCCCcEEeccccchhhcC------------CChhhhhhhccccCccccCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNG------------DPLKSLAEMNTIGENKWKESP 212 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LG------------ysqeEL~q~~liGqSi~D~vH 212 (630)
.+++.+|+|+|+++...++|| ++.+| ++|+++.++.+
T Consensus 19 iv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~-----~~G~~~~~~~~ 67 (121)
T 4hi4_A 19 MIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGR-----LMGANIDVFHK 67 (121)
T ss_dssp EEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGG-----CTTCBGGGGCS
T ss_pred EEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHH-----hcCCCHHHhcC
Confidence 467999999999999999996 67667 58999887764
No 112
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=82.55 E-value=0.23 Score=45.82 Aligned_cols=38 Identities=11% Similarity=-0.108 Sum_probs=34.2
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.|++.+|+|+++++...+++|++.+| ++|++++++...
T Consensus 36 ~v~D~~g~I~~~N~a~~~~~G~~~~e-----viG~~~~~~~p~ 73 (152)
T 3mxq_A 36 CIVRNDYVIVKVNEYFESRVIFDGET-----MQGKNILELFPE 73 (152)
T ss_dssp EEEETTSBEEEECHHHHHTSSSCHHH-----HTTSBHHHHSGG
T ss_pred EEEcCCCEEEEECHHHHHHHCcCHHH-----HCCCCHHHhcCC
Confidence 47899999999999999999999988 489999988755
No 113
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=82.33 E-value=0.28 Score=39.04 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=32.7
Q ss_pred ccCCC-CcEEeccccchhhcCCChhhhhhhccccCc--cccCCCCCC
Q psy8265 172 PILPN-GHINYPSQEIKKYNGDPLKSLAEMNTIGEN--KWKESPPVV 215 (630)
Q Consensus 172 Vls~d-GkIlYVSEnVs~~LGysqeEL~q~~liGqS--i~D~vHP~l 215 (630)
+++.+ |+|+|+|+...+++|++.+++ +|.. +.+++||.+
T Consensus 26 ~~d~~~~~i~~~n~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~ 67 (125)
T 3eeh_A 26 EFTADLSEVLVINSAYEDIWGRSVAKL-----RENPHDFLNGIHPED 67 (125)
T ss_dssp EEETTSSCEEEECTHHHHHHSSCHHHH-----HHCGGGGGGGBCHHH
T ss_pred EEEcCCCcEEEecHHHHHHHCCCHHHH-----ccCcHHHHHhcCHHH
Confidence 56788 999999999999999999885 5665 678888863
No 114
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=82.12 E-value=0.23 Score=40.09 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=34.3
Q ss_pred ccCCCCcEEeccccchhhcCCChhhhhhhcccc--CccccCCCCCCC
Q psy8265 172 PILPNGHINYPSQEIKKYNGDPLKSLAEMNTIG--ENKWKESPPVVS 216 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liG--qSi~D~vHP~ls 216 (630)
+.+.+|.++|+|+...+++|++.+++ +| ..+.+++||.+.
T Consensus 22 ~~d~~~~~~~~n~~~~~~~G~~~~~~-----~~~~~~~~~~~~~~d~ 63 (125)
T 3nja_A 22 VLHMESGRLEWSQAVHDIFGTDSATF-----DATEDAYFQRVHPDDR 63 (125)
T ss_dssp EEETTTTEEEECHHHHHHHTCCTTTC-----CCBHHHHHHHBCTTTH
T ss_pred EEEcCCCcEEECHHHHHHhCCCcccc-----cccHHHHHhhcChhHH
Confidence 56899999999999999999998884 67 677888999754
No 115
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=80.17 E-value=0.63 Score=37.61 Aligned_cols=37 Identities=8% Similarity=-0.077 Sum_probs=30.1
Q ss_pred ccCC---CCcEEeccccchhhcCCChhhhhhhccccCcc-ccCCCC
Q psy8265 172 PILP---NGHINYPSQEIKKYNGDPLKSLAEMNTIGENK-WKESPP 213 (630)
Q Consensus 172 Vls~---dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi-~D~vHP 213 (630)
+++. +|+|+|+++...+++|++.+|+ +|+++ ++++++
T Consensus 34 ~~d~~~~~g~i~~~N~~~~~l~g~~~~~~-----~g~~~~~~~~~~ 74 (138)
T 2l0w_A 34 IANARVENCAVIYCNDGFCELCGYSRAEV-----MQRPCTCDFLHG 74 (138)
T ss_dssp EEESSSTTCBEEEECSHHHHHHSCCHHHH-----TTSBTTCGGGCC
T ss_pred EEecCCCCCEEEEeCHHHHHHhCCCHHHH-----cCCCCcccccCC
Confidence 5677 8999999999999999999884 89884 554443
No 116
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=79.60 E-value=0.69 Score=42.03 Aligned_cols=38 Identities=5% Similarity=-0.033 Sum_probs=33.5
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.+++.+|+|+|+++.+.++||++.++ ++|+++.++.++
T Consensus 94 i~~D~~g~I~~~N~aa~~llg~~~~~-----~~g~~~~~~~~~ 131 (190)
T 2jhe_A 94 LSVDMKSKVDMANPASCQLFGQKLDR-----LRNHTAAQLING 131 (190)
T ss_dssp EEECTTCBEEEECHHHHHHHTSCHHH-----HTTSBGGGTSTT
T ss_pred EEEcCCCCEEEEcHHHHHHhCCCHHH-----hcCccHHHHhCC
Confidence 46799999999999999999998888 489999888765
No 117
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=78.19 E-value=0.63 Score=49.21 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=37.6
Q ss_pred eeeeccCCCCCCCCCCccCC-CCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 156 TVLMWGSNPSRSPPASPILP-NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 156 ~~L~~gfll~~~~~~~Vls~-dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.+.-.|+|+ |++. +++|+.+|+|+.++||.+.++ ++|+++-++.-+
T Consensus 48 ~IQphG~LL-------~l~~~~~~I~~~S~N~~~~lg~~~~~-----llG~~l~~ll~~ 94 (343)
T 3s7o_A 48 SIQPHGALL-------TADGHSGEVLQMSLNAATFLGQEPTV-----LRGQTLAALLPE 94 (343)
T ss_dssp EECTTSEEE-------EEETTTCBEEEEETTHHHHHSSCHHH-----HTTCBHHHHSTT
T ss_pred ccCCCeEEE-------EEECCCCEEEEEcccHHHHhCcChHH-----HcCCCHHHHHhH
Confidence 444478888 7765 899999999999999999888 489988777655
No 118
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=77.97 E-value=1.2 Score=40.77 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=30.6
Q ss_pred CccCCCCcEEecccc---chhhcCCChhhhhhhccccCccccCCCC
Q psy8265 171 SPILPNGHINYPSQE---IKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 171 ~Vls~dGkIlYVSEn---Vs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.+++.+|+|+|+|+. ..+++| ..+| ++|+++.++ ||
T Consensus 33 ~~vD~~g~I~~~N~a~~~~~~i~g-~~~~-----~iGr~v~~~-~~ 71 (151)
T 2qkp_A 33 TFVNKDDIFQYYNDSVPAAEMVFK-RTPS-----QVGRNVELC-HP 71 (151)
T ss_dssp EEEETTSBEEEECCCSCGGGCSSC-CCGG-----GTTSBGGGS-SC
T ss_pred EEEcCCCeEEEEeCCCchhhhhcC-CCHH-----HcCCCHHHh-CC
Confidence 478999999999999 999999 4566 599999885 44
No 119
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=77.70 E-value=0.75 Score=44.61 Aligned_cols=37 Identities=11% Similarity=-0.087 Sum_probs=31.9
Q ss_pred CccCCCCcEEeccccchhhc------------CCChhhhhhhccccCccccCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYN------------GDPLKSLAEMNTIGENKWKESP 212 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~L------------GysqeEL~q~~liGqSi~D~vH 212 (630)
.+++.+|+|+|++++..++| ||+.+| ++|+++.++..
T Consensus 36 ii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~e-----liG~~~~~~~~ 84 (233)
T 3vol_A 36 MIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGR-----LMGANIDVFHK 84 (233)
T ss_dssp EEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTS-----CTTCBGGGGSS
T ss_pred EEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHH-----HcCCCHHHHcC
Confidence 47799999999999999999 788878 58999887764
No 120
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=77.51 E-value=0.42 Score=47.69 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=35.2
Q ss_pred CCCC-CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 167 SPPA-SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 167 ~~~~-~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.++. .+++.+|+|+|+++...+++|++.+| ++|+++.++.++
T Consensus 17 ~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e-----~~G~~~~~~~~~ 59 (349)
T 3a0r_A 17 LETAIITLSKDGRITEWNKKAEQLFGLKKEN-----VLGRRLKDLPDF 59 (349)
T ss_dssp SSSEEEEEESSSBCSCBCHHHHHHHSCCSTT-----TTTCBSTTSTTT
T ss_pred hcCeEEEECCCCCEEeeHHHHHHHhCCCHHH-----HcCcCHHHCcCh
Confidence 3443 46799999999999999999999988 489999988554
No 121
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=75.93 E-value=0.81 Score=48.07 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=37.3
Q ss_pred eeeeccCCCCCCCCCCccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 156 TVLMWGSNPSRSPPASPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 156 ~~L~~gfll~~~~~~~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.+.-.|+|+ |++.+++|+.+|+|+.++||.+.++ ++|+++-++.-+
T Consensus 25 ~IQphG~Ll-------~~~~~~~I~~~S~N~~~~lg~~~~~-----~lG~~l~~ll~~ 70 (327)
T 4e04_A 25 AIQPHGLLL-------ALAADMTIVAGSDNLPELTGLAIGA-----LIGRSAADVFDS 70 (327)
T ss_dssp EECTTSEEE-------EECTTCBEEEEETTHHHHHSCCHHH-----HTTCBHHHHBCH
T ss_pred ccCCCeEEE-------EEcCCCeEEEEcccHHHHhCCChHh-----hcCCCHHHHcCH
Confidence 444478888 7778899999999999999999888 489877666543
No 122
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=74.19 E-value=0.71 Score=39.69 Aligned_cols=41 Identities=7% Similarity=-0.051 Sum_probs=35.1
Q ss_pred CccCCCC---cEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 171 SPILPNG---HINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 171 ~Vls~dG---kIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
.+++.+| +|+|+++...+++|++.+| ++|+++.++.++...
T Consensus 39 ~~~d~~~~~~~i~~~N~~~~~~~g~~~~~-----~~g~~~~~~~~~~~~ 82 (162)
T 3sw1_A 39 VVAEKEGDDTILIYVNAAFEYLTGYSRDE-----ILYQDCRFLQGDDRD 82 (162)
T ss_dssp EEEEEETTEEEEEEECHHHHHHHTCCHHH-----HTTSBGGGGTTTCCC
T ss_pred EEEeCCCCccEEEEECHHHHHHHCCCHHH-----HcCCCcceecCCCcC
Confidence 3678899 9999999999999999888 489999888877543
No 123
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=72.61 E-value=1.5 Score=37.68 Aligned_cols=41 Identities=20% Similarity=0.093 Sum_probs=31.1
Q ss_pred ccCCCCcEEeccccchhhcCCChhhhhhhcccc--CccccCCCCCCCC
Q psy8265 172 PILPNGHINYPSQEIKKYNGDPLKSLAEMNTIG--ENKWKESPPVVSP 217 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liG--qSi~D~vHP~ls~ 217 (630)
..+.+|.++|+|+...+++||+.+++ .| ..+.+.+||.+..
T Consensus 24 ~~d~~~~~~~~s~~~~~~~G~~~~~~-----~~~~~~~~~~ihpdD~~ 66 (142)
T 3mr0_A 24 DWNPKTGAMYLSPHFKKIMGYEDHEL-----PDEITGHRESIHPDDRA 66 (142)
T ss_dssp EECTTTCCEEECHHHHHHTTCCGGGS-----CSEEC---CCBCTTTHH
T ss_pred EEEcCCCeEEECHHHHHHhCCCcccc-----CCCHHHHHhhcCHHHHH
Confidence 34778999999999999999998885 33 3567899998653
No 124
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=71.03 E-value=0.72 Score=39.84 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=32.7
Q ss_pred CccC-CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 171 SPIL-PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 171 ~Vls-~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
.+++ .+|+|+|+|+...+++|++ + ++|+++.++.++..
T Consensus 31 ~~~d~~~~~i~~~N~~~~~~~g~~--~-----~~G~~~~~~~~~~~ 69 (158)
T 3k3c_A 31 VGLEGPDHRFVAVNAAYRGFSPLL--D-----TVGQPAREVYPELE 69 (158)
T ss_dssp EEEETTTTEEEEECHHHHHHCTTC--C-----STTSBHHHHSGGGG
T ss_pred EEEECCCcEeHHHHHHHHHHcCCc--h-----hcCCcHHHhCCchh
Confidence 3567 9999999999999999998 6 58999999887753
No 125
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=68.75 E-value=1.1 Score=40.65 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=33.3
Q ss_pred CccC-CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 171 SPIL-PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 171 ~Vls-~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
.+++ .+|+|+|+|+...+++|++ | ++|+++.++.++...
T Consensus 51 ~~~d~~~g~i~~~N~a~~~l~G~~--~-----~~G~~~~~~~~~~~~ 90 (185)
T 3kx0_X 51 VGLEGPDHRFVAVNAAYRGFSPLL--D-----TVGQPAREVYPELEG 90 (185)
T ss_dssp EEEETTTTEEEEECHHHHHHCCCC--S-----CTTSBHHHHCTTSCS
T ss_pred EEEECCCcEEEEEcHHHHHHcCCc--c-----ccCCcHHHHCCchhh
Confidence 3667 9999999999999999998 6 589999999877543
No 126
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=67.81 E-value=2.7 Score=47.27 Aligned_cols=40 Identities=8% Similarity=-0.091 Sum_probs=35.8
Q ss_pred ccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 172 PILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
+.+.+|+|+|+|+.+.+++||+.+| ++|+..++.+|+...
T Consensus 533 ~~D~~grI~~~N~a~~~l~G~s~~e-----~~g~~~l~~~~~~~~ 572 (635)
T 4eho_A 533 ITDAEGRILLMNDSFRDMLPAGSPS-----AVHLDDLAGFFVESN 572 (635)
T ss_dssp EEETTCCEEEECHHHHTTSCSSCCC-----CCSSGGGTTSSSSCT
T ss_pred EECCCCeEeeHHHHHHHHHCcChHH-----HcCcchhhccCCCCH
Confidence 5689999999999999999999988 589999999998754
No 127
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=63.40 E-value=33 Score=33.58 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=50.4
Q ss_pred cCceeeeeccccccccCCChhhh----ccC----cccceeccccHHHHHH---HHHHHHhc-----CCc--eeeEEEEEe
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTEL----ANM----GGYDLVHYDDLAYVAS---AHQELLKT-----GAS--GMIAYRFQT 345 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEEL----lG~----S~ydlIHPDDl~~V~e---ah~~lLkk-----Gqs--~s~eYRfrt 345 (630)
-++.+.+++..+..++||.++++ +.. -+.+.+||+|...... .....+.. +.. ....+|++.
T Consensus 52 ~~~~~~~~s~~~~~llG~~~~~~~~~~~~~~~~~~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~ 131 (258)
T 3clo_A 52 SNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMN 131 (258)
T ss_dssp TTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEEC
T ss_pred CCCeEEEEeCCHHHHhCCCcccchHHHHhhhHHHHHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCC
Confidence 35889999999999999999987 422 2455789998774443 33333321 112 234567777
Q ss_pred cCCcEEEEEEEEEEEE
Q psy8265 346 NDGGWQWLQTSSRLVY 361 (630)
Q Consensus 346 KdGswVWVeTsa~li~ 361 (630)
..+.++.+..+...+.
T Consensus 132 ~qe~fl~~~~~~~~~~ 147 (258)
T 3clo_A 132 EKGVYQYIDNLVQIMQ 147 (258)
T ss_dssp TTSCEEEEEEEEEEEE
T ss_pred cCHHHHHHHHhHHhcC
Confidence 7888887666555443
No 128
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=63.18 E-value=1.4 Score=49.01 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=37.4
Q ss_pred eeeeccCCCCCCCCCCccCC-CCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 156 TVLMWGSNPSRSPPASPILP-NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 156 ~~L~~gfll~~~~~~~Vls~-dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.+.-.|+|+ |++. +++|+.+|+|+.++||.+.+++ +|+++-++.-+
T Consensus 25 ~IQphG~LL-------al~~~~~~I~~~S~N~~~~lg~~~~~l-----lG~~l~~ll~~ 71 (520)
T 3zq5_A 25 LIQPHGLVV-------VLQEPDLTISQISANCTGILGRSPEDL-----LGRTLGEVFDS 71 (520)
T ss_dssp EECTTSEEE-------EEETTTTEEEEEETTHHHHHSCCHHHH-----TTSBHHHHCEE
T ss_pred ccCCCeEEE-------EEECCCCEEEEEcccHHHHhCcChHHH-----cCCCHHHHcCH
Confidence 444478888 7764 8999999999999999998884 89988776644
No 129
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=53.04 E-value=4.4 Score=44.90 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=33.4
Q ss_pred eeeeccCCCCCCCCCCccCCCCcEEeccccchhhcCCChhhhhhhccccCcccc
Q psy8265 156 TVLMWGSNPSRSPPASPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWK 209 (630)
Q Consensus 156 ~~L~~gfll~~~~~~~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D 209 (630)
.+.-.|+|+ |++.+++|+.+|+|+.++||.+. ++|+++-+
T Consensus 22 ~IQphG~Ll-------~l~~~~~I~~~S~N~~~~lg~~~-------~lG~~l~~ 61 (505)
T 3nhq_A 22 AIQPHGALV-------TLRADGMVLAASENIQALLGFVA-------SPGSYLTQ 61 (505)
T ss_dssp EECTTEEEE-------EECTTSBEEEEETTHHHHHSSCC-------CTTCBCCH
T ss_pred ccCCCeEEE-------EEcCCCeEEEEcccHHHHhCccc-------ccCCchhh
Confidence 444478888 88789999999999999999865 48988877
No 130
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=45.89 E-value=9.9 Score=39.63 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=30.7
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.+++.+|+|+|+|+. .+++ ++.++ ++|+++.++..+
T Consensus 253 ivvD~~g~I~~~N~a-e~i~-~~~~e-----~iGr~v~~~~p~ 288 (369)
T 3cax_A 253 TFIDKDDRVRFFSPG-ERIF-TRTPS-----VLGRPVQLCHPP 288 (369)
T ss_dssp EEECTTSBEEEECCS-SCSS-CCCGG-----GTTCBTTTSSCG
T ss_pred EEECCCCcEEEEcCH-HHcc-CChHH-----HcCCcHHHHCCh
Confidence 478999999999999 9999 77777 589999886544
No 131
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=41.18 E-value=8.1 Score=39.37 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=32.0
Q ss_pred CCCC-CccCCCCcEEeccccchhhcC---CChhhhhhhccccCccccCCCC
Q psy8265 167 SPPA-SPILPNGHINYPSQEIKKYNG---DPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 167 ~~~~-~Vls~dGkIlYVSEnVs~~LG---ysqeEL~q~~liGqSi~D~vHP 213 (630)
.++. .+++.+|+|+|+|++..++|| +. ++ ++|+++.++...
T Consensus 179 ~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~-----~iGk~l~el~~~ 223 (305)
T 2ykf_A 179 AGDGFIRLDVDGVVSYASPNALSAYHRMGLT-TE-----LEGVNLIDATRP 223 (305)
Confidence 3444 578999999999999999975 43 44 589999888754
No 132
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=27.23 E-value=34 Score=35.83 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=39.7
Q ss_pred ceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHH
Q psy8265 275 EVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASA 326 (630)
Q Consensus 275 s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~ea 326 (630)
+..+... .|++|+.++..+..+||..+++++|+++-+++-++....++..
T Consensus 30 G~Ll~~~--~~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~~~~~l~~~ 79 (327)
T 4e04_A 30 GLLLALA--ADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLTIA 79 (327)
T ss_dssp SEEEEEC--TTCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHHHHHHHHHH
T ss_pred eEEEEEc--CCCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHHHHHHHHHH
Confidence 3444433 7899999999999999999999999999998876655555543
No 133
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=24.37 E-value=28 Score=28.95 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=13.3
Q ss_pred CccCCCCcEEecccc
Q psy8265 171 SPILPNGHINYPSQE 185 (630)
Q Consensus 171 ~Vls~dGkIlYVSEn 185 (630)
-|++.+||++|||+.
T Consensus 53 GViDDRGKfIyIs~e 67 (72)
T 1wi9_A 53 GVIDDRGKFIYITPS 67 (72)
T ss_dssp EEECTTCCEEECCCS
T ss_pred EEEeCCCCEEEecHH
Confidence 388999999999985
No 134
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=23.34 E-value=31 Score=36.39 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=35.7
Q ss_pred cCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHH
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASA 326 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~ea 326 (630)
.|++|+.++..+..+||..+++++|+++-+++-+ ....+++.
T Consensus 61 ~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~-~~~~l~~~ 102 (343)
T 3s7o_A 61 HSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE-QWPALQAA 102 (343)
T ss_dssp TTCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT-THHHHHHH
T ss_pred CCCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH-HHHHHHHH
Confidence 4789999999999999999999999999988876 66655543
Done!