Query psy8265
Match_columns 630
No_of_seqs 403 out of 1289
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 22:56:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8265.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8265hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oj5a_ d.110.3.8 (A:) PAS dom 99.9 3.6E-24 2.6E-28 188.1 7.1 103 276-378 2-109 (109)
2 d1p97a_ d.110.3.7 (A:) Hypoxia 99.8 1.9E-21 1.4E-25 167.6 10.7 109 273-381 3-113 (114)
3 d1n9la_ d.110.3.6 (A:) Putativ 99.5 2.9E-14 2.1E-18 122.1 11.9 94 284-377 14-108 (109)
4 d1bywa_ d.110.3.6 (A:) Erg pot 99.4 1.9E-13 1.4E-17 116.4 9.9 96 284-379 12-110 (110)
5 d1jnua_ d.110.3.6 (A:) Photore 99.4 3.4E-13 2.5E-17 113.6 9.6 93 284-376 11-104 (104)
6 d1xj3a1 d.110.3.2 (A:154-259) 99.3 1E-11 7.5E-16 102.3 10.1 98 280-378 4-105 (106)
7 d1ew0a_ d.110.3.2 (A:) Histidi 99.0 3.7E-10 2.7E-14 97.2 10.4 98 279-377 29-130 (130)
8 d1v9ya_ d.110.3.2 (A:) Direct 98.9 1.5E-09 1.1E-13 90.3 9.2 96 279-375 14-113 (113)
9 d1ll8a_ d.110.3.5 (A:) N-termi 98.7 3.2E-09 2.3E-13 90.6 4.0 102 274-377 8-113 (114)
10 d1nwza_ d.110.3.1 (A:) Photoac 98.5 6.9E-08 5E-12 84.2 7.8 81 279-359 30-111 (125)
11 d1mzua_ d.110.3.1 (A:) PYP dom 98.5 6.4E-08 4.6E-12 83.0 7.1 81 279-360 16-98 (110)
12 d2oola2 d.110.3.9 (A:26-139) S 97.7 4.6E-06 3.4E-10 71.6 1.3 48 156-215 13-61 (114)
13 d2oola2 d.110.3.9 (A:26-139) S 97.6 3.5E-05 2.6E-09 65.9 5.8 66 283-349 25-90 (114)
14 d1oj5a_ d.110.3.8 (A:) PAS dom 97.2 2.9E-05 2.1E-09 66.2 0.9 41 172-217 7-48 (109)
15 d1p97a_ d.110.3.7 (A:) Hypoxia 97.2 3.1E-05 2.3E-09 64.5 0.6 41 172-217 11-51 (114)
16 d1ll8a_ d.110.3.5 (A:) N-termi 96.5 0.0024 1.7E-07 53.1 6.8 40 172-216 13-53 (114)
17 d1jnua_ d.110.3.6 (A:) Photore 96.3 0.00097 7.1E-08 54.3 3.1 37 175-216 11-47 (104)
18 d1n9la_ d.110.3.6 (A:) Putativ 96.1 0.002 1.4E-07 53.2 4.4 37 175-216 14-50 (109)
19 d1mzua_ d.110.3.1 (A:) PYP dom 96.1 0.00057 4.2E-08 57.6 0.8 45 166-215 11-56 (110)
20 d1v9ya_ d.110.3.2 (A:) Direct 95.5 0.0024 1.7E-07 51.5 2.1 46 167-217 10-56 (113)
21 d1xj3a1 d.110.3.2 (A:154-259) 95.4 0.0023 1.7E-07 50.9 1.5 40 171-215 4-43 (106)
22 d1nwza_ d.110.3.1 (A:) Photoac 94.8 0.0038 2.8E-07 53.2 1.5 42 171-217 31-72 (125)
23 d1ew0a_ d.110.3.2 (A:) Histidi 94.7 0.0031 2.3E-07 52.6 0.5 47 166-217 24-71 (130)
24 d2o9ca2 d.110.3.9 (A:4-130) Ba 93.0 0.0091 6.6E-07 52.2 0.2 46 156-213 31-77 (127)
25 d2veaa3 d.110.3.9 (A:4-130) Ph 92.8 0.016 1.2E-06 50.6 1.6 46 157-214 23-69 (127)
26 d1bywa_ d.110.3.6 (A:) Erg pot 89.4 0.045 3.3E-06 44.4 0.9 30 175-209 12-41 (110)
27 d3c2wa3 d.110.3.9 (A:5-117) Ba 88.7 0.07 5.1E-06 45.3 1.7 33 157-196 19-51 (113)
28 d2o9ca2 d.110.3.9 (A:4-130) Ba 85.7 0.32 2.3E-05 42.0 4.2 68 284-355 44-112 (127)
29 d2veaa3 d.110.3.9 (A:4-130) Ph 82.4 0.18 1.3E-05 43.7 1.1 44 283-326 34-77 (127)
30 d3c2wa3 d.110.3.9 (A:5-117) Ba 25.9 71 0.0051 25.7 6.7 35 282-317 28-62 (113)
31 d1wi9a_ a.4.5.47 (A:) Hypothet 25.8 12 0.00086 29.2 1.4 16 171-186 53-68 (72)
No 1
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.89 E-value=3.6e-24 Score=188.15 Aligned_cols=103 Identities=22% Similarity=0.314 Sum_probs=93.5
Q ss_pred eeeEEeeccCceeeeeccccccccCCCh-hhhccCcccceeccccHH--HHHHHHHHHHhcCCceeeEEEEEecCCcEEE
Q psy8265 276 VMFKSKHKLDLSLVSMDQRGKMLLGYSD-TELANMGGYDLVHYDDLA--YVASAHQELLKTGASGMIAYRFQTNDGGWQW 352 (630)
Q Consensus 276 ~~FiTRhslDGkftyVDprv~~LLGYsp-EELlG~S~ydlIHPDDl~--~V~eah~~lLkkGqs~s~eYRfrtKdGswVW 352 (630)
++|++||++||+|++||+++..++||.+ |||+|+++++|+||||++ ..+..++.++.+|+..+.+||+++|||+|+|
T Consensus 2 e~F~trh~~~g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vW 81 (109)
T d1oj5a_ 2 ESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLS 81 (109)
T ss_dssp CEEEEEECTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEE
T ss_pred ceEEEEECCCceEEEECHHHhhHhhcCCHHHHcCCcHHHeECcccchHHHhhHHHHHHHhhcccchhhhhhhhccCcEEE
Confidence 5799999999999999999999999996 999999999999999975 5566778888999999999999999999999
Q ss_pred EEEEEEEEEe--CCCceEEEEEEEecCc
Q psy8265 353 LQTSSRLVYK--NSKPDFVISTHRPLME 378 (630)
Q Consensus 353 VeTsa~li~~--nGkpe~IVgt~rdISE 378 (630)
|+++++++++ ++++++|||+|+++.|
T Consensus 82 v~t~~~~~~~~~~~~~~~Ii~~h~i~~~ 109 (109)
T d1oj5a_ 82 AHTRCKLCYPQSPDMQPFIMGIHIIDRE 109 (109)
T ss_dssp EEEEEEEECC----CCCEEEEEEEEECC
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEecC
Confidence 9999999985 7889999999999875
No 2
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.84 E-value=1.9e-21 Score=167.64 Aligned_cols=109 Identities=28% Similarity=0.501 Sum_probs=101.9
Q ss_pred ccceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEE
Q psy8265 273 HKEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQW 352 (630)
Q Consensus 273 l~s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVW 352 (630)
++...|++||++||+|+|||+++..++||+++||+|+++++++||+|.+.+.+.++.+++.+.....++|+++|||+++|
T Consensus 3 ~d~~~fi~r~~~dG~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~w 82 (114)
T d1p97a_ 3 MDSKTFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVW 82 (114)
T ss_dssp CCCEEEEEEECTTTSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSSSHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEEE
T ss_pred cCcCEEEEEECCCCcEEEECHHHHHHcCCCccccccccccccccccccccceeeeeecccccceeecceeeeeecCcceE
Confidence 46789999999999999999999999999999999999999999999999999998888766677889999999999999
Q ss_pred EEEEEEEEEe--CCCceEEEEEEEecCchhh
Q psy8265 353 LQTSSRLVYK--NSKPDFVISTHRPLMEEEG 381 (630)
Q Consensus 353 VeTsa~li~~--nGkpe~IVgt~rdISErE~ 381 (630)
++++++++++ +|++.+|||+++||||+|.
T Consensus 83 v~~~~~~~~~~~~~~~~~ii~~~~dite~k~ 113 (114)
T d1p97a_ 83 LETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 113 (114)
T ss_dssp EEEEEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEEECChhhc
Confidence 9999999985 6899999999999999863
No 3
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.52 E-value=2.9e-14 Score=122.11 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=86.7
Q ss_pred cCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEEEEEe-
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK- 362 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~li~~- 362 (630)
.||+|+|||++++.++||+++||+|+++..+.|+++.+...+.+.+.+++|+....++++++|||+.+|++.+..++++
T Consensus 14 pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~~w~~~~~~pi~d~ 93 (109)
T d1n9la_ 14 PDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTP 93 (109)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECT
T ss_pred CCCeEEEEcHHHHHHHCcCHHHHcCCcceeeecccCCHHHhhhhhhHhhcCCceeeeEEEEecCCeEEEEEEEEEEEECC
Confidence 5899999999999999999999999999999999876777777788888888888999999999999999999999986
Q ss_pred CCCceEEEEEEEecC
Q psy8265 363 NSKPDFVISTHRPLM 377 (630)
Q Consensus 363 nGkpe~IVgt~rdIS 377 (630)
+|++.++|++.+|||
T Consensus 94 ~G~v~~~v~~~~DIT 108 (109)
T d1n9la_ 94 DGRVSKFVGVQVDVT 108 (109)
T ss_dssp TSCEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEECC
Confidence 899999999999998
No 4
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.43 E-value=1.9e-13 Score=116.44 Aligned_cols=96 Identities=15% Similarity=0.037 Sum_probs=85.6
Q ss_pred cCceeeeeccccccccCCChhhhccCcccce--eccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEEEEE
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTELANMGGYDL--VHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVY 361 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEELlG~S~ydl--IHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~li~ 361 (630)
.|+.|+|+|+++++++||.++|++|+++... .||++.......+.+.+++|+....++++++++|+.+|++.++.+++
T Consensus 12 ~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~w~~~~~~pi~ 91 (110)
T d1bywa_ 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVK 91 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCCEEEEEcHHHHHHhCCCHHHhcccCcccccceeeheecccccccchhhcccccccceeeeeecccceeeeeeeEEEEE
Confidence 5899999999999999999999999987553 36676667777778888888888899999999999999999999998
Q ss_pred e-CCCceEEEEEEEecCch
Q psy8265 362 K-NSKPDFVISTHRPLMEE 379 (630)
Q Consensus 362 ~-nGkpe~IVgt~rdISEr 379 (630)
+ +|++.++|++.+||||+
T Consensus 92 d~~G~v~~~i~~~~DITer 110 (110)
T d1bywa_ 92 NEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp CTTCCEEEEEEEEEEEEEC
T ss_pred CCCCCEEEEEEEEEECCCC
Confidence 7 89999999999999986
No 5
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.40 E-value=3.4e-13 Score=113.56 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=88.3
Q ss_pred cCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEEEEEEe-
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSSRLVYK- 362 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa~li~~- 362 (630)
.||+|+|||++++.++||+++|++|+++.+++++++.+...+.+...++.++....++++++++|+.+|++.+..++++
T Consensus 11 pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~pi~d~ 90 (104)
T d1jnua_ 11 PDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNLFHLQVMRDE 90 (104)
T ss_dssp TTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEECTT
T ss_pred CCCEEEEEcHHHHHHHCcCHHHHCCccceeccccccchHHHhhhhhhhhcCceeEeEEEEEecccceEEEEEEEEEEECC
Confidence 5899999999999999999999999999999999999999999999999898889999999999999999999999986
Q ss_pred CCCceEEEEEEEec
Q psy8265 363 NSKPDFVISTHRPL 376 (630)
Q Consensus 363 nGkpe~IVgt~rdI 376 (630)
+|++.+++++.+||
T Consensus 91 ~G~v~~~i~i~~DI 104 (104)
T d1jnua_ 91 NGDVQYFIGVQQEM 104 (104)
T ss_dssp TSSCCEEEEEEEEC
T ss_pred CCCEEEEEEEEEcC
Confidence 89999999999997
No 6
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.26 E-value=1e-11 Score=102.35 Aligned_cols=98 Identities=14% Similarity=-0.029 Sum_probs=83.3
Q ss_pred EeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCc----eeeEEEEEecCCcEEEEEE
Q psy8265 280 SKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGAS----GMIAYRFQTNDGGWQWLQT 355 (630)
Q Consensus 280 TRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs----~s~eYRfrtKdGswVWVeT 355 (630)
...+.+|+|+++|+++++++||+.+||+|+.+..++++.+.......+...+..+.. ...++++++|||..+|++.
T Consensus 4 ~~~D~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~v~~ 83 (106)
T d1xj3a1 4 IVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFPMHL 83 (106)
T ss_dssp EEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEEEEEE
T ss_pred EEECCCCcEEEEcHHHHHHhhhchHhhcCCCcccccccccccchhhhhhhhhhhcccccccccceeeeeeccceEEEEEE
Confidence 346889999999999999999999999999999999999888877777766655432 4578999999999999999
Q ss_pred EEEEEEeCCCceEEEEEEEecCc
Q psy8265 356 SSRLVYKNSKPDFVISTHRPLME 378 (630)
Q Consensus 356 sa~li~~nGkpe~IVgt~rdISE 378 (630)
+..++..+ +...++++.+||||
T Consensus 84 ~~~~~~~~-~~~~~~~~~~DITE 105 (106)
T d1xj3a1 84 SIGEMQSG-GEPYFTGFVRDLTE 105 (106)
T ss_dssp EEEEEEET-TEEEEEEEEEECHH
T ss_pred EEEEEEEC-CeEEEEEEEEeCCC
Confidence 99988654 44578899999986
No 7
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.04 E-value=3.7e-10 Score=97.22 Aligned_cols=98 Identities=16% Similarity=0.065 Sum_probs=82.6
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCc----eeeEEEEEecCCcEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGAS----GMIAYRFQTNDGGWQWLQ 354 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs----~s~eYRfrtKdGswVWVe 354 (630)
+...+.||+|+++|+++..++||.++|++|+++.+++++.+.......++..+..++. ...++++++|||..+||+
T Consensus 29 i~~~d~~g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~ 108 (130)
T d1ew0a_ 29 TVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMK 108 (130)
T ss_dssp EEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTGGGHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEE
T ss_pred EEEEeCCccEEEEHHHHHHhhcCCHHHhcCCccccccccchhHHHHHHHHHHHHhCCCccccceeeEEEEcCCCCEEEEE
Confidence 3445889999999999999999999999999999999888877777777777766543 467899999999999999
Q ss_pred EEEEEEEeCCCceEEEEEEEecC
Q psy8265 355 TSSRLVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 355 Tsa~li~~nGkpe~IVgt~rdIS 377 (630)
.....+..++. ..++++.+|||
T Consensus 109 ~~~~~i~~~~~-~~~~~i~rDIT 130 (130)
T d1ew0a_ 109 LAVGEMRSGGE-RFFTGFIRDLT 130 (130)
T ss_dssp EEEEEEEETTE-EEEEEEEEECC
T ss_pred EEEEEEEECCe-EEEEEEEEECC
Confidence 99988766544 45788889997
No 8
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=98.93 E-value=1.5e-09 Score=90.27 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=74.1
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCC----ceeeEEEEEecCCcEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGA----SGMIAYRFQTNDGGWQWLQ 354 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGq----s~s~eYRfrtKdGswVWVe 354 (630)
+...+.||+|+++|+++.+++||+++|++|+++..++++.+.......+...+..+. ....+.++++|||+.+|++
T Consensus 14 i~~~d~~g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~ 93 (113)
T d1v9ya_ 14 AVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTR 93 (113)
T ss_dssp EEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCEEEEchhHhhhhccchhhhcCcceecccccccccccccccccccccccccccccceeeeeccccceeEEEE
Confidence 344688999999999999999999999999999999887766555555555554332 2456789999999999999
Q ss_pred EEEEEEEeCCCceEEEEEEEe
Q psy8265 355 TSSRLVYKNSKPDFVISTHRP 375 (630)
Q Consensus 355 Tsa~li~~nGkpe~IVgt~rd 375 (630)
.+..++..++. .+++++.+|
T Consensus 94 ~~~~~i~~~~~-~~~~~v~rD 113 (113)
T d1v9ya_ 94 FALSKVSAEGK-VYYLALVRD 113 (113)
T ss_dssp EEEEEEEETTE-EEEEEEEEC
T ss_pred EEEEEEEECCe-EEEEEEEEC
Confidence 99999877654 457777765
No 9
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.70 E-value=3.2e-09 Score=90.63 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=80.8
Q ss_pred cceeeEEeeccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCc----eeeEEEEEecCCc
Q psy8265 274 KEVMFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGAS----GMIAYRFQTNDGG 349 (630)
Q Consensus 274 ~s~~FiTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs----~s~eYRfrtKdGs 349 (630)
+...|+.- ..+|+|++||+++.+++||+.+||+|+++.+++++++...+...++..++++.. ...+..+++|+|+
T Consensus 8 n~AI~~id-~~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~ 86 (114)
T d1ll8a_ 8 NKAIFTVD-AKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGE 86 (114)
T ss_dssp TCEEEEEE-TTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTCC
T ss_pred CcEEEEEE-CCCCEEEEECHHHHHhhcCCHHHHcCCCeeeecCcccHHHHHHHHHHHHhcCCCccceeeEEEEEEccCCc
Confidence 44444432 137999999999999999999999999999999999988877776676665542 2236788999999
Q ss_pred EEEEEEEEEEEEeCCCceEEEEEEEecC
Q psy8265 350 WQWLQTSSRLVYKNSKPDFVISTHRPLM 377 (630)
Q Consensus 350 wVWVeTsa~li~~nGkpe~IVgt~rdIS 377 (630)
.+||+.+++.+..+|++ .++++.+||+
T Consensus 87 ~~pvevs~~~i~~~~~~-~~l~vi~dV~ 113 (114)
T d1ll8a_ 87 KIPVSVWMKRMRQERRL-CCVVVLEPVE 113 (114)
T ss_dssp CEEEECCEECCBSSSSB-EEEEEEEECC
T ss_pred EEEEEEEEEEEEECCeE-EEEEEEEECc
Confidence 99999999876556665 4678889983
No 10
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=98.54 E-value=6.9e-08 Score=84.24 Aligned_cols=81 Identities=7% Similarity=-0.071 Sum_probs=65.8
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccc-cHHHHHHHHHHHHhcCCceeeEEEEEecCCcEEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYD-DLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPD-Dl~~V~eah~~lLkkGqs~s~eYRfrtKdGswVWVeTsa 357 (630)
+...+.||+|+++|+++..++||.++|++|++++++++|+ +...+...+.+++.+|......-..++++|+++||+.+.
T Consensus 30 i~~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~~~v~v~l 109 (125)
T d1nwza_ 30 AIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQMTPTKVKVHM 109 (125)
T ss_dssp EEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEECTTSCCEEEEEEE
T ss_pred EEEEeCCCCEEEEcHHHHHhhccchHhhcCCCHHHccCchhhhhheeeeceeeeecCCcceEEEEEeccCCcEEEEEEEE
Confidence 4446889999999999999999999999999999999886 445667777888888876443333468999999999875
Q ss_pred EE
Q psy8265 358 RL 359 (630)
Q Consensus 358 ~l 359 (630)
..
T Consensus 110 ~~ 111 (125)
T d1nwza_ 110 KK 111 (125)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 11
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=98.52 E-value=6.4e-08 Score=83.03 Aligned_cols=81 Identities=7% Similarity=-0.018 Sum_probs=67.5
Q ss_pred EEeeccCceeeeeccccccccCCChhhhccCcccceeccc-cHHHHHHHHHHHHhcCCc-eeeEEEEEecCCcEEEEEEE
Q psy8265 279 KSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYD-DLAYVASAHQELLKTGAS-GMIAYRFQTNDGGWQWLQTS 356 (630)
Q Consensus 279 iTRhslDGkftyVDprv~~LLGYspEELlG~S~ydlIHPD-Dl~~V~eah~~lLkkGqs-~s~eYRfrtKdGswVWVeTs 356 (630)
+...+.||+|+++|+++++++||+++|++|++++++++|+ ..+.+...+.+.+++|+. ...++.+ +++|.++||+.+
T Consensus 16 vi~~D~~G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~l-~~~G~~~~v~v~ 94 (110)
T d1mzua_ 16 AIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVF-DFQMAPVRVQIR 94 (110)
T ss_dssp EEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEE-ECSSCEEEEEEE
T ss_pred EEEEcCCCCEEEeHHHHHHHHcCCHHHHcCCCHHHhcCChhhhHHHHHHHHHHHhccccCcceEEEE-ecCCceEEEEEE
Confidence 4557889999999999999999999999999999988875 456777888888888876 4456664 789999999987
Q ss_pred EEEE
Q psy8265 357 SRLV 360 (630)
Q Consensus 357 a~li 360 (630)
....
T Consensus 95 ~~~~ 98 (110)
T d1mzua_ 95 MQNA 98 (110)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6543
No 12
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=97.66 E-value=4.6e-06 Score=71.62 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=41.3
Q ss_pred eeeeccCCCCCCCCCCccC-CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 156 TVLMWGSNPSRSPPASPIL-PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 156 ~~L~~gfll~~~~~~~Vls-~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
.+.-.|||+ |++ .+|+|+|||+|+..+||+++++ ++|+++.|++||.+
T Consensus 13 ~IQphG~Ll-------vld~~d~~I~~vS~N~~~lLG~~~~~-----llG~~l~dll~~~~ 61 (114)
T d2oola2 13 AIQPHGYLF-------VVSETDLRIASVSANVEDLLRQPPAS-----LLNVPIAHYLTAAS 61 (114)
T ss_dssp EECTTSEEE-------EECTTTCBEEEEETTHHHHHSSCGGG-----GTTCBGGGGBCHHH
T ss_pred ccCCCcEEE-------EEECCCCEEEEEcCCHHHHhCCChHH-----HcCCCHHHhCCHHH
Confidence 344468888 776 5799999999999999999999 58999999999963
No 13
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=97.58 E-value=3.5e-05 Score=65.88 Aligned_cols=66 Identities=21% Similarity=0.116 Sum_probs=49.4
Q ss_pred ccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCCceeeEEEEEecCCc
Q psy8265 283 KLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGG 349 (630)
Q Consensus 283 slDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGqs~s~eYRfrtKdGs 349 (630)
..||+|++|++.+..+||+.+++|+|+++.+++|++|.+.+++.+...-. .......+++..++|.
T Consensus 25 ~~d~~I~~vS~N~~~lLG~~~~~llG~~l~dll~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~ 90 (114)
T d2oola2 25 ETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHALHGGDP-AAINPIRLDVVTPDGE 90 (114)
T ss_dssp TTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHHHCC-----CCCSEEEEEEETTEE
T ss_pred CCCCEEEEEcCCHHHHhCCChHHHcCCCHHHhCCHHHHHHHHHHHhcCCc-ccCCCEEEEEecCCCC
Confidence 45899999999999999999999999999999999999888876532111 1112345666665543
No 14
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.24 E-value=2.9e-05 Score=66.21 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=36.3
Q ss_pred ccCCCCcEEeccccchhhcCCC-hhhhhhhccccCccccCCCCCCCC
Q psy8265 172 PILPNGHINYPSQEIKKYNGDP-LKSLAEMNTIGENKWKESPPVVSP 217 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGys-qeEL~q~~liGqSi~D~vHP~ls~ 217 (630)
..+.+|+|+||+.++..+|||. ++|| +|++++||+||.+.+
T Consensus 7 rh~~~g~~~~vd~~~~~~~gy~~~eel-----ig~s~~~f~HPeD~~ 48 (109)
T d1oj5a_ 7 KQDTTGKIISIDTSSLRAAGRTGWEDL-----VRKCIYAFFQPQGRE 48 (109)
T ss_dssp EECTTCCEEEEECHHHHTTCCSCHHHH-----HHHHHHHHTSCBTTB
T ss_pred EECCCceEEEECHHHhhHhhcCCHHHH-----cCCcHHHeECcccch
Confidence 4478999999999999999998 4884 899999999998754
No 15
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.19 E-value=3.1e-05 Score=64.55 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=36.9
Q ss_pred ccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCC
Q psy8265 172 PILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSP 217 (630)
Q Consensus 172 Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~ 217 (630)
..+.||+|+|||+++.++|||+++|| +|+++++++||.+..
T Consensus 11 r~~~dG~i~~~N~~~~~~~G~~~~el-----~g~~~~~~~~~ed~~ 51 (114)
T d1p97a_ 11 RHSMDMKFTYCDDRITELIGYHPEEL-----LGRSAYEFYHALDSE 51 (114)
T ss_dssp EECTTTSCSEECTTHHHHTSSCHHHH-----TTSCHHHHSCSSSHH
T ss_pred EECCCCcEEEECHHHHHHcCCCcccc-----ccccccccccccccc
Confidence 35889999999999999999999994 899999999997543
No 16
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.48 E-value=0.0024 Score=53.06 Aligned_cols=40 Identities=13% Similarity=-0.046 Sum_probs=35.2
Q ss_pred ccC-CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 172 PIL-PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 172 Vls-~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
+++ .+|+|+|+++.+.++|||+.+| ++|+++.+++++...
T Consensus 13 ~id~~~G~I~~~N~a~~~l~Gy~~~e-----l~g~~~~~l~~~~~~ 53 (114)
T d1ll8a_ 13 TVDAKTTEILVANDKACGLLGYSSQD-----LIGQKLTQFFLRSDS 53 (114)
T ss_dssp EEETTTCBEEEECTTHHHHHTCCTTT-----TTTSBGGGGSSCTTT
T ss_pred EEECCCCEEEEECHHHHHhhcCCHHH-----HcCCCeeeecCcccH
Confidence 445 5799999999999999999999 489999999988654
No 17
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=96.29 E-value=0.00097 Score=54.29 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=33.5
Q ss_pred CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 175 PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 175 ~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
.||+|+|+|++..+++||+.+|| +|+++.++.++...
T Consensus 11 pd~~I~y~N~a~~~~~G~s~~e~-----~G~~~~~~~~~~~~ 47 (104)
T d1jnua_ 11 PDNPIIFASDRFLELTEYTREEV-----LGNNCRFLQGRGTD 47 (104)
T ss_dssp TTCCEEEECHHHHHHHTCCHHHH-----TTSCGGGGCCTTSC
T ss_pred CCCEEEEEcHHHHHHHCcCHHHH-----CCccceeccccccc
Confidence 58999999999999999999994 89999999988754
No 18
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=96.15 E-value=0.002 Score=53.24 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=33.0
Q ss_pred CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCC
Q psy8265 175 PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVS 216 (630)
Q Consensus 175 ~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls 216 (630)
+||+|+|||+...+++||+.+|| +|+++..+.||...
T Consensus 14 pdg~Ii~vN~a~~~~~Gy~~~El-----~G~~~~~l~~~~~~ 50 (109)
T d1n9la_ 14 PDCPLVYASEGFYAMTGYGPDEV-----LGHNCRFLQGEGTD 50 (109)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHH-----TTSCGGGGCCTTCC
T ss_pred CCCeEEEEcHHHHHHHCcCHHHH-----cCCcceeeecccCC
Confidence 58999999999999999999995 89999888887644
No 19
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=96.12 E-value=0.00057 Score=57.61 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=38.3
Q ss_pred CCCCC-CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 166 RSPPA-SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 166 ~~~~~-~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
..|+. .+++.+|+|+|++....+++||+.+|+ +|+++++.++|..
T Consensus 11 ~~p~gvi~~D~~G~I~~~N~aa~~~~G~~~eel-----lG~~~~~~~~p~~ 56 (110)
T d1mzua_ 11 ALPVGAIQVDGSGVIHRYNRTESRLSGRIPERV-----IGRNFFTEVAPCT 56 (110)
T ss_dssp GCSSEEEEEETTCBEEEECHHHHHHHCCCHHHH-----TTSBCCCCCCGGG
T ss_pred CCCcEEEEEcCCCCEEEeHHHHHHHHcCCHHHH-----cCCCHHHhcCChh
Confidence 33444 467999999999999999999999994 8999999988864
No 20
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=95.50 E-value=0.0024 Score=51.53 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=38.3
Q ss_pred CCCC-CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCC
Q psy8265 167 SPPA-SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSP 217 (630)
Q Consensus 167 ~~~~-~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~ 217 (630)
++++ .+++.+|+|+|++....+++||+.+| ++|+++.++.++....
T Consensus 10 ~~d~i~~~d~~g~i~~~N~~~~~l~Gy~~~e-----~~g~~~~~~~~~~~~~ 56 (113)
T d1v9ya_ 10 NMMGAVLINENDEVMFFNPAAEKLWGYKREE-----VIGNNIDMLIPRDLRP 56 (113)
T ss_dssp CSSEEEEECTTSBEEEECHHHHHHHSCCGGG-----TTTSBGGGGSCGGGTT
T ss_pred CcCcEEEEeCCCCEEEEchhHhhhhccchhh-----hcCcceeccccccccc
Confidence 3443 46799999999999999999999999 4899999888776443
No 21
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=95.37 E-value=0.0023 Score=50.87 Aligned_cols=40 Identities=23% Similarity=0.055 Sum_probs=35.9
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVV 215 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~l 215 (630)
.+++.+|+|+|+|+...+++||+.+|| +|+.+..+.++..
T Consensus 4 ~~~D~~G~I~~~N~a~~~l~Gy~~~el-----~g~~~~~~~~~~~ 43 (106)
T d1xj3a1 4 IVIDGHGIIQLFSTAAERLFGWSELEA-----IGQNVNILMPEPD 43 (106)
T ss_dssp EEEETTSBEEEECHHHHHHHCCCHHHH-----TTSBGGGGSCTTH
T ss_pred EEECCCCcEEEEcHHHHHHhhhchHhh-----cCCCccccccccc
Confidence 367999999999999999999999995 8999999998853
No 22
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=94.85 E-value=0.0038 Score=53.20 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=37.5
Q ss_pred CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCC
Q psy8265 171 SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSP 217 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~ 217 (630)
.+++.+|+|+|++....+++|++.+| ++|++++++++|....
T Consensus 31 ~~lD~~G~i~~~N~a~~~l~G~~~~e-----~iG~~~~~~~~p~~~~ 72 (125)
T d1nwza_ 31 IQLDGDGNILQYNAAEGDITGRDPKQ-----VIGKNFFKDVAPCTDS 72 (125)
T ss_dssp EEEETTCBEEEECHHHHHHHCCCHHH-----HTTSBCCCCCCGGGCS
T ss_pred EEEeCCCCEEEEcHHHHHhhccchHh-----hcCCCHHHccCchhhh
Confidence 47799999999999999999999999 4899999999987543
No 23
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=94.69 E-value=0.0031 Score=52.60 Aligned_cols=47 Identities=19% Similarity=0.120 Sum_probs=38.7
Q ss_pred CCCCC-CccCCCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCCCCC
Q psy8265 166 RSPPA-SPILPNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPVVSP 217 (630)
Q Consensus 166 ~~~~~-~Vls~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ls~ 217 (630)
..+++ .+++.+|+|+|+|..+.+++||+.+|| +|+++.++.++....
T Consensus 24 ~~~~~i~~~d~~g~i~~~N~~~~~l~Gy~~~el-----~g~~~~~~~~~~~~~ 71 (130)
T d1ew0a_ 24 TVPDATVVSATDGTIVSFNAAAVRQFGYAEEEV-----IGQNLRILMPEPYRH 71 (130)
T ss_dssp TCSSEEEEEETTSBEEEECHHHHHHHCCCHHHH-----TTSBGGGGSCTTTGG
T ss_pred cCCCeEEEEeCCccEEEEHHHHHHhhcCCHHHh-----cCCccccccccchhH
Confidence 34444 467999999999999999999999995 899998888876543
No 24
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=92.99 E-value=0.0091 Score=52.21 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=38.4
Q ss_pred eeeeccCCCCCCCCCCccC-CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCC
Q psy8265 156 TVLMWGSNPSRSPPASPIL-PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPP 213 (630)
Q Consensus 156 ~~L~~gfll~~~~~~~Vls-~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP 213 (630)
.+.-.|+|+ |++ .+++|+++|+|+.++||++.++| +|+++.++...
T Consensus 31 ~IQphG~LL-------ald~~~~~I~~~S~N~~~~lG~~~~~l-----lG~~l~~ll~~ 77 (127)
T d2o9ca2 31 SIQPHGALL-------TADGHSGEVLQMSLNAATFLGQEPTVL-----RGQTLAALLPE 77 (127)
T ss_dssp EECTTSEEE-------EEETTTCBEEEEETTHHHHHSSCHHHH-----TTCBHHHHCTT
T ss_pred ccCCCeEEE-------EEECCCCEEEEECCCHHHHhCCChHHH-----cCCCHHHHCCH
Confidence 344478888 776 58999999999999999999994 89999888744
No 25
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=92.78 E-value=0.016 Score=50.63 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=38.2
Q ss_pred eeeccCCCCCCCCCCccC-CCCcEEeccccchhhcCCChhhhhhhccccCccccCCCCC
Q psy8265 157 VLMWGSNPSRSPPASPIL-PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKESPPV 214 (630)
Q Consensus 157 ~L~~gfll~~~~~~~Vls-~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D~vHP~ 214 (630)
+.-.|+|+ |++ .+++|+++|+|+.++||.+.++ ++|+++-++.-+.
T Consensus 23 IQphG~LL-------ald~~~~~I~~aS~N~~~~lG~~~~~-----lLG~~l~~ll~~~ 69 (127)
T d2veaa3 23 IQPHGLVV-------VLQEPDLTISQISANCTGILGRSPED-----LLGRTLGEVFDSF 69 (127)
T ss_dssp ECTTSEEE-------EEETTTTEEEEEETTHHHHTSCCTTT-----SSTTTTTTTSBCC
T ss_pred cCCCeEEE-------EEECCCCEEEEEcCCHHHHhCcChHH-----HcCCCHHHHCCHH
Confidence 33468888 776 5899999999999999999988 5899998887553
No 26
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.36 E-value=0.045 Score=44.42 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=27.1
Q ss_pred CCCcEEeccccchhhcCCChhhhhhhccccCcccc
Q psy8265 175 PNGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWK 209 (630)
Q Consensus 175 ~dGkIlYVSEnVs~~LGysqeEL~q~~liGqSi~D 209 (630)
.|+.|+|+|+...+++||+.+|+ +|+++++
T Consensus 12 ~d~~I~~~N~a~~~l~G~~~~ei-----iG~~~~~ 41 (110)
T d1bywa_ 12 ENCAVIYCNDGFCELCGYSRAEV-----MQRPCTC 41 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHH-----TTSBTTC
T ss_pred CCCEEEEEcHHHHHHhCCCHHHh-----cccCccc
Confidence 57889999999999999999995 8998866
No 27
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=88.73 E-value=0.07 Score=45.29 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=28.0
Q ss_pred eeeccCCCCCCCCCCccCCCCcEEeccccchhhcCCChhh
Q psy8265 157 VLMWGSNPSRSPPASPILPNGHINYPSQEIKKYNGDPLKS 196 (630)
Q Consensus 157 ~L~~gfll~~~~~~~Vls~dGkIlYVSEnVs~~LGysqeE 196 (630)
+.-.|||+ |++.+|+|+.+|+|+.++||++.+.
T Consensus 19 IQphG~LL-------ald~~~~I~~~S~N~~~~lg~~~~~ 51 (113)
T d3c2wa3 19 IQPHGALV-------TLRADGMVLAASENIQALLGFVASP 51 (113)
T ss_dssp ECTTEEEE-------EECTTSBEEEEETTHHHHTSSCCCT
T ss_pred cCCCeEEE-------EEcCCCeEEEEcCCHHHHhCCChhH
Confidence 33468889 8899999999999999999997543
No 28
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=85.68 E-value=0.32 Score=41.96 Aligned_cols=68 Identities=13% Similarity=0.021 Sum_probs=45.1
Q ss_pred cCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHHHHHHHhcCC-ceeeEEEEEecCCcEEEEEE
Q psy8265 284 LDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGA-SGMIAYRFQTNDGGWQWLQT 355 (630)
Q Consensus 284 lDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~eah~~lLkkGq-s~s~eYRfrtKdGswVWVeT 355 (630)
.|++|+.++..+..++|+.+++++|+++.+++ +++...+.... ...+. ......++...++.-.|+-.
T Consensus 44 ~~~~I~~~S~N~~~~lG~~~~~llG~~l~~ll-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~ 112 (127)
T d2o9ca2 44 HSGEVLQMSLNAATFLGQEPTVLRGQTLAALL-PEQWPALQAAL---PPGCPDALQYRATLDWPAAGHLSLTV 112 (127)
T ss_dssp TTCBEEEEETTHHHHHSSCHHHHTTCBHHHHC-TTTHHHHHHHS---CTTCCTTCCEEEEECCSSSSEEEEEE
T ss_pred CCCEEEEECCCHHHHhCCChHHHcCCCHHHHC-CHHHHHHHHHh---hhcCcccccceeeeecCCCceEEEEE
Confidence 47999999999999999999999999999988 45554433321 12222 23344444445555445443
No 29
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=82.40 E-value=0.18 Score=43.68 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=33.4
Q ss_pred ccCceeeeeccccccccCCChhhhccCcccceeccccHHHHHHH
Q psy8265 283 KLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASA 326 (630)
Q Consensus 283 slDGkftyVDprv~~LLGYspEELlG~S~ydlIHPDDl~~V~ea 326 (630)
..|++++.++..+..++|..+++++|+++-+++-++....++..
T Consensus 34 ~~~~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~~~~~~~l~~~ 77 (127)
T d2veaa3 34 EPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPIQSR 77 (127)
T ss_dssp TTTTEEEEEETTHHHHTSCCTTTSSTTTTTTTSBCC--------
T ss_pred CCCCEEEEEcCCHHHHhCcChHHHcCCCHHHHCCHHHHHHHHHH
Confidence 35799999999999999999999999999999977776666554
No 30
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.85 E-value=71 Score=25.67 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=27.2
Q ss_pred eccCceeeeeccccccccCCChhhhccCcccceecc
Q psy8265 282 HKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHY 317 (630)
Q Consensus 282 hslDGkftyVDprv~~LLGYspEELlG~S~ydlIHP 317 (630)
.+.|++|+.|+..+..++|..++ .+|+.+.+.+-+
T Consensus 28 ld~~~~I~~~S~N~~~~lg~~~~-~L~~~~~~~~~~ 62 (113)
T d3c2wa3 28 LRADGMVLAASENIQALLGFVAS-PGSYLTQEQVGP 62 (113)
T ss_dssp ECTTSBEEEEETTHHHHTSSCCC-TTCBCCHHHHHH
T ss_pred EcCCCeEEEEcCCHHHHhCCChh-HhcccHHHHhCH
Confidence 45689999999999999999865 567776655533
No 31
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.75 E-value=12 Score=29.18 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=14.0
Q ss_pred CccCCCCcEEeccccc
Q psy8265 171 SPILPNGHINYPSQEI 186 (630)
Q Consensus 171 ~Vls~dGkIlYVSEnV 186 (630)
-|++.+||++|||++-
T Consensus 53 GViDDRGKfIyIS~s~ 68 (72)
T d1wi9a_ 53 GVIDDRGKFIYITPSG 68 (72)
T ss_dssp EEECTTCCEEECCCSS
T ss_pred eEEcCCCCEEEEcCCC
Confidence 3899999999999873
Done!