RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8265
(630 letters)
>gnl|CDD|219844 pfam08447, PAS_3, PAS fold. The PAS fold corresponds to the
structural domain that has previously been defined as
PAS and PAC motifs. The PAS fold appears in archaea,
eubacteria and eukarya.
Length = 90
Score = 73.6 bits (181), Expect = 4e-16
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 289 VSMDQRGKMLLGYSDTELAN--MGGYDLVHYDDLAYVASAHQE-LLKTGASGMIAYRFQT 345
+ R + +LGY+ EL + G DLVH +D V A QE LK G YR +
Sbjct: 2 IYWSPRFEEILGYTPEELKSSYEGWLDLVHPEDRERVRRALQEFSLKKGEPYSGEYRIRR 61
Query: 346 NDGGWQWLQTSSRLVY-KNSKPDFVISTH 373
DG ++W++ R + +N KP VI
Sbjct: 62 KDGEYRWVEARGRPIRDENGKPVRVIGVA 90
>gnl|CDD|238075 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria
and eukarya. Probably the most surprising identification
of a PAS domain was that in EAG-like K+-channels. PAS
domains have been found to bind ligands, and to act as
sensors for light and oxygen in signal transduction.
Length = 103
Score = 56.5 bits (136), Expect = 6e-10
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 298 LLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357
LLGYS EL DL+H +D + + LL G + R + DG W+ S
Sbjct: 24 LLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTLEVRLRRKDGSVIWVLVSL 83
Query: 358 RLVY 361
+
Sbjct: 84 TPIR 87
Score = 33.8 bits (77), Expect = 0.045
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 568 GYSSPFESDIVHQSVYELVHSEDREELQRQL 598
GYS +++ +S+ +L+H EDREEL+ +L
Sbjct: 26 GYS---PEELIGKSLLDLIHPEDREELRERL 53
>gnl|CDD|232884 TIGR00229, sensory_box, PAS domain S-box. The PAS domain was
previously described. This sensory box, or S-box domain
occupies the central portion of the PAS domain but is
more widely distributed. It is often tandemly repeated.
Known prosthetic groups bound in the S-box domain
include heme in the oxygen sensor FixL, FAD in the redox
potential sensor NifL, and a 4-hydroxycinnamyl
chromophore in photoactive yellow protein. Proteins
containing the domain often contain other regulatory
domains such as response regulator or sensor histidine
kinase domains. Other S-box proteins include
phytochromes and the aryl hydrocarbon receptor nuclear
translocator [Regulatory functions, Small molecule
interactions].
Length = 124
Score = 43.8 bits (104), Expect = 2e-05
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 287 SLVSMDQRGKM---------LLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASG 337
+++ +D G + + GYS EL +L+ +D V + L+
Sbjct: 15 AIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERRLEGEREP 74
Query: 338 M-IAYRFQTNDGGWQWLQTSSRLVYKNSKPDFVISTHR 374
+ R + DG W++ S + N V+ R
Sbjct: 75 VSEERRVRRKDGSEIWVEVSVSPIRTNGGELGVVGIVR 112
>gnl|CDD|197509 smart00086, PAC, Motif C-terminal to PAS motifs (likely to
contribute to PAS structural domain). PAC motif occurs
C-terminal to a subset of all known PAS motifs. It is
proposed to contribute to the PAS domain fold.
Length = 43
Score = 38.7 bits (91), Expect = 2e-04
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 341 YRFQTNDGGWQWLQTSSRLVY-KNSKPDFVISTHRPLMEE 379
YR + DG + W+ S+ + ++ + + ++ R + E
Sbjct: 4 YRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVRDITER 43
>gnl|CDD|214512 smart00091, PAS, PAS domain. PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels.
Length = 67
Score = 32.0 bits (73), Expect = 0.094
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 292 DQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLK 332
+ + LLGYS EL +L+H +D V A Q LL
Sbjct: 27 NPAAEELLGYSPEELIGKSLLELIHPEDRERVQEALQRLLS 67
Score = 31.2 bits (71), Expect = 0.18
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 568 GYSSPFESDIVHQSVYELVHSEDREELQRQL 598
GYS +++ +S+ EL+H EDRE +Q L
Sbjct: 35 GYS---PEELIGKSLLELIHPEDRERVQEAL 62
>gnl|CDD|216228 pfam00989, PAS, PAS fold. The PAS fold corresponds to the
structural domain that has previously been defined as
PAS and PAC motifs. The PAS fold appears in archaea,
eubacteria and eukarya.
Length = 113
Score = 32.0 bits (73), Expect = 0.26
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 298 LLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIA-YRFQTNDGGWQWLQ-T 355
LLG S E+ DL+ DD A VA ++ L G F+ DG + ++
Sbjct: 33 LLGLSREEVIGKSLLDLIPEDDDAEVAELLRQALLQGEESRGFEVSFRVPDGRPRHVEVR 92
Query: 356 SSRLVYKNSKPDFVISTHRP 375
+S + + + R
Sbjct: 93 ASPVRDAGGEVRGFLGVLRD 112
Score = 29.7 bits (67), Expect = 1.8
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 568 GYSSPFESDIVHQSVYELVHSEDREELQRQLMWN 601
G S +++ +S+ +L+ +D E+ L
Sbjct: 35 GLS---REEVIGKSLLDLIPEDDDAEVAELLRQA 65
>gnl|CDD|222120 pfam13426, PAS_9, PAS domain.
Length = 101
Score = 31.6 bits (72), Expect = 0.27
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 298 LLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRFQTNDGGWQWLQTSS 357
LLGY+ EL DL D + +E L+ G + + DG + S+
Sbjct: 20 LLGYTREELLGKSIRDLFGPGDDEEAVARLREALRNGGEVEVELELRRKDGEPFPVLVSA 79
Query: 358 RLVY-KNSKPDFVISTHR 374
V ++ + ++ R
Sbjct: 80 SPVRDEDGEVVGIVGILR 97
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase
inhibitor.
Length = 553
Score = 34.0 bits (78), Expect = 0.28
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 405 YFSDSDQLTPSHQTLAPSPGSAQSGSSSTTPQRVNRRYKTQLRDFLSTCRTKRKMSAQHA 464
+ S S H PSP S ST PQ + T+ D TC + +S
Sbjct: 15 FHSPSSSSNRHHHHHTPSPSPPPPSSPSTPPQILLACNATRFPD---TCVS--SLSNAGR 69
Query: 465 APPPPTPAPPIEYLTPPDAVAAAYSNMYTTGYSATTPEYMSQSLYD 510
PP P P + +A S +A + M +S+ D
Sbjct: 70 VPPDP---------KPIQIIQSAISVSRENLKTAQS---MVKSILD 103
>gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional.
Length = 1092
Score = 33.9 bits (78), Expect = 0.35
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 286 LSLVSMDQRGKM-------LLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGASGM 338
++LV + + LGYS EL + L +DL + + ++ SG
Sbjct: 296 MALVGTEGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDL----NKDLQQVEKLLSGE 351
Query: 339 I-AY----RFQTNDGGWQWLQTSSRLV 360
I +Y R+ DG W + LV
Sbjct: 352 INSYSMEKRYYRRDGEVVWALLAVSLV 378
>gnl|CDD|232822 TIGR00094, tRNA_TruD_broad, tRNA pseudouridine synthase, TruD
family. an EGAD loading error caused one member to be
called surE, but that's an adjacent gene. MJ11364 is a
strong partial match from 50 to 230 aa [Protein
synthesis, tRNA and rRNA base modification].
Length = 387
Score = 31.3 bits (71), Expect = 1.7
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 221 YQSYNENGPSERLDIRGRIKILHGQNRKLEEPPLALFAICTPFGPPSLLEIPHKEVMFKS 280
YQSY N SER+++ G + G E AL P L++ +K+ ++
Sbjct: 264 YQSYLFNIKSERIELMGTAPLP-GDGLIDELEREALRFEKKEVAPEGALDVKYKKALYAR 322
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 31.0 bits (70), Expect = 1.9
Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 6/75 (8%)
Query: 467 PPPTPAPPIEYLTP-PDAVAAAYSNMYTTGYSATTP-----EYMSQSLYDNRLPYENLFH 520
P TP P + TP + M S TP Y S P
Sbjct: 267 PAQTPMPERSWQTPAQTPARRISTPMTEEIKSWQTPLQTPAMYSSDYQAPKPEPIYTWEE 326
Query: 521 QYRPYYPEYQPYTVS 535
R +P S
Sbjct: 327 LLRERFPSDLFAISS 341
>gnl|CDD|173857 cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 484
Score = 30.7 bits (70), Expect = 2.5
Identities = 11/94 (11%), Positives = 25/94 (26%), Gaps = 24/94 (25%)
Query: 475 IEYLTPPDAVAAAYSN---MYTTGYSATTPEYMSQSLYDNRLPYENLFHQYRP------- 524
++ L A S + + Y P+ + + + ++
Sbjct: 377 LKVLDAGTLTARRASGDYDLALSYYGRADPDILRTLFHSANRNPPGGYSRFADPELDDLL 436
Query: 525 --------------YYPEYQPYTVSNGFSLPTYE 544
Y + Q Y + + +P YE
Sbjct: 437 EKAAATTDPAERAALYADAQKYLIEQAYVVPLYE 470
>gnl|CDD|218235 pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal
ceramidase. This family represents a group of
neutral/alkaline ceramidases found in both bacteria and
eukaryotes.
Length = 672
Score = 30.7 bits (70), Expect = 2.6
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 476 EYLTPPDAVAAAYSNMYTTGYSATTPEYMSQ------SLYD-NRLP-YENLFHQYRPY 525
P V A +N Y Y T EY Q +L+ + L Y F + P
Sbjct: 461 AAGIKPHVVIAGLANAY-AHYVTTPEEYAIQRYEGASTLFGPHTLAAYIQEFLRLAPA 517
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is
synthesized from fructose-6-phosphate. In Mycobacterium
tuberculosis, the causative agent of tuberculosis, PMM
is involved in the biosynthesis of mannosylated
lipoglycans that participate in the association of
mycobacteria with host macrophage phagocytic receptors.
ManB belongs to the the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include the phosphoglucomutases (PGM1 and
PGM2), phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 459
Score = 30.6 bits (70), Expect = 2.6
Identities = 10/36 (27%), Positives = 11/36 (30%)
Query: 459 MSAQHAAPPPPTPAPPIEYLTPPDAVAAAYSNMYTT 494
+ A P P L P A AY YT
Sbjct: 121 ILAALVELPEALFDPAGALLPPDTDAADAYIARYTD 156
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 30.4 bits (69), Expect = 3.3
Identities = 21/86 (24%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 407 SDSDQLTPSHQTLAPSPGSAQ---SGSSSTTPQRVNRRYKTQLRD--FLSTCRTKRKMSA 461
S S T Q+ A S S+ S SST+P+ R+ K +
Sbjct: 1 SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60
Query: 462 QHAAPPPPTPAPPIEYLTPPDAVAAA 487
+ PP L P AAA
Sbjct: 61 PPSVTLPPAATTQTPQLNPLQRAAAA 86
>gnl|CDD|178421 PLN02826, PLN02826, dihydroorotate dehydrogenase.
Length = 409
Score = 30.1 bits (68), Expect = 3.5
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 430 SSSTTPQRVNRRYKTQLRDFLSTCRTKR-KMSAQHAAPPP 468
SS TP + + QL+D L R +M PPP
Sbjct: 225 SSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPP 264
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 29.6 bits (66), Expect = 5.5
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 458 KMSAQHAAPPPPTPAPPIEYLTPPDAVAAAYSNMYTTGYSATTP 501
A HAAP PP PAP P A A S TP
Sbjct: 230 AARAPHAAPDPPAPAPAPAKTAAPAAAAPVSS---GDSGPYVTP 270
>gnl|CDD|233927 TIGR02557, HpaP, type III secretion protein HpaP. This family of
genes is always found in type III secretion operons,
althought its function in the processes of secretion and
virulence is unclear. Hpa stands for Hrp-associated
gene, where Hrp stands for hypersensitivity response and
virulence.
Length = 201
Score = 29.1 bits (65), Expect = 5.7
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 421 PSPGSAQSGSSSTTPQRVNRRYKTQLRDFLSTCRTKRKMSAQHAAPPPPTPAPPIEYLTP 480
G+ + + P R RR + +R+ + +A PP P P PP + P
Sbjct: 1 IIQGARLARPAPADPARPARRR-------TPLAQLRRRDALAYAPPPRPEPPPPCDEDRP 53
Query: 481 PDA 483
Sbjct: 54 EPR 56
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 29.5 bits (66), Expect = 7.2
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 119 DGLSSNDSSPVPSNHLVTPKVEDIKSESFNYSEVPRQTVLMWGSNPSRSPPA---SPILP 175
+ S + SP PS+H P +KS N ++ RS A SP+ P
Sbjct: 14 ETSSGEEQSPNPSSHKSKPSSRKLKSSKENAPPPDLNSLTSDLKPDHRSASAKLKSPLPP 73
Query: 176 NGHINYPSQEIKKYNGDPLKSLAEMNTIGENKWKES 211
PS +PLK T EN +S
Sbjct: 74 RP----PSS-------NPLKRKLSAETAPENGVSDS 98
>gnl|CDD|183147 PRK11465, PRK11465, putative mechanosensitive channel protein;
Provisional.
Length = 741
Score = 29.4 bits (66), Expect = 7.3
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 413 TPSHQTLAPSPGSAQSGSSSTTPQRV-----NRRYKTQLRDFLSTCRTKRKMSAQ---HA 464
P+H P + S S+T P + L D L +++++ Q A
Sbjct: 14 APAHAVSIPGVTTTTSTDSTTEPAPEPDIEQKKAAYAALADVLDNDTSRKELIDQLRTAA 73
Query: 465 APPPPTPAPPIEYLTPPDAV 484
A PP P P I PP V
Sbjct: 74 ATPPAEPVPKI---VPPTLV 90
>gnl|CDD|145958 pfam03084, Sigma_1_2, Reoviral Sigma1/Sigma2 family. Reoviruses
are double-stranded RNA viruses. They lack a membrane
envelope and their capsid is organised in two concentric
icosahedral layers: an inner core and an outer capsid
layer. The sigma1 protein is found in the outer capsid,
and the sigma2 protein is found in the core. There are
four other kinds of protein (besides sigma2) in the
core, termed lambda 1-3, mu2. Interactions between
sigma2 and lambda 1 and lambda 3 are thought to initiate
core formation, followed by mu2 and lambda2. Sigma1 is a
trimeric protein, and is positioned at the 12 vertices
of the icosahedral outer capsid layer. Its N-terminal
fibrous tail, arranged as a triple coiled coil, anchors
it in the virion, and a C-terminal globular head
interacts with the cellular receptor. These two parts
form by separate trimerisation events. The N-terminal
fibrous tail forms on the polysome, without the
involvement of ATP or chaperones. The post-
translational assembly of the C-terminal globular head
involves the chaperone activity of Hsp90, which is
associated with phosphorylation of Hsp90 during the
process. Sigma1 protein acts as a cell attachment
protein, and determines viral virulence, pathways of
spread, and tropism. Junctional adhesion molecule has
been identified as a receptor for sigma1. In type 3
reoviruses, a small region, predicted to form a beta
sheet, in the N-terminal tail was found to bind target
cell surface sialic acid (i.e. sialic acid acts as a
co-receptor) and promote apoptosis. The sigma1 protein
also binds to the lambda2 core protein.
Length = 415
Score = 29.1 bits (65), Expect = 7.7
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 405 YFSDSDQLTPSHQT--LAPSPGSAQSGS----SSTTPQRVNRRYKTQLRDFLSTCRTKRK 458
SD+ L + P+ GS S+T P + + +FL T
Sbjct: 40 QSSDTISLGRGLVSTPEVPTAGSRYYQESMLLSATVPIVLRPNDAWRDFNFLRLVWTDPT 99
Query: 459 MSAQHAAPPPPTPAPPIEYLTPPDAVAAAYSNM 491
+S AAPPPP A P +A + ++
Sbjct: 100 LSGLVAAPPPP-LAQPY------QPQSARWYDL 125
>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 504
Score = 29.0 bits (65), Expect = 8.7
Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 420 APSPGSAQSGSSSTTPQRVNRRYKTQLRDFLSTCRTKRKMSAQHAAPPP---------PT 470
APS G A + P + +R ++ S + AP P P
Sbjct: 345 APSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPA 404
Query: 471 PAPPIEYLTPPDAVAAA 487
P P P VA A
Sbjct: 405 PEPARSA-EAPPLVAPA 420
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 27.9 bits (62), Expect = 10.0
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 450 LSTCRTKRKMSAQHAAPPPPTPAPPIEYLTPPDAVAAA 487
LS + RK+ A P PP P P +P AV
Sbjct: 69 LSMEQEARKILAPLTPPAPPEPVTPPTAQSPAPAVPTP 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.391
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,890,134
Number of extensions: 3032173
Number of successful extensions: 2499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2470
Number of HSP's successfully gapped: 49
Length of query: 630
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 527
Effective length of database: 6,369,140
Effective search space: 3356536780
Effective search space used: 3356536780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (27.7 bits)