RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8265
         (630 letters)



>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator
           1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 109

 Score = 75.1 bits (184), Expect = 4e-17
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 278 FKSKHKLDLSLVSMDQRGKMLLGYSDTE-LANMGGYDLVHYDD--LAYVASAHQELLKTG 334
           F +K      ++S+D       G +  E L     Y          +Y     QE++  G
Sbjct: 4   FMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRG 63

Query: 335 ASGMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVISTHR 374
            +   +YRF  NDG      T  +L Y        F++  H 
Sbjct: 64  TASSPSYRFILNDGTMLSAHTRCKLCYPQSPDMQPFIMGIHI 105



 Score = 28.8 bits (64), Expect = 0.59
 Identities = 8/49 (16%), Positives = 19/49 (38%)

Query: 576 DIVHQSVYELVHSEDREELQRQLMWNSFLPPESAGISLQECFLQENSYL 624
           D+V + +Y     + RE    + ++   +   +A        L + + L
Sbjct: 32  DLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 80


>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 277 MFKSKHKLDLSLVSMDQRGKMLLGYSDTELANMGGYDLVHYDDLAYVASAHQELLKTGAS 336
            F S+H +D+     D R   L+GY   EL     Y+  H  D   +  +HQ L   G  
Sbjct: 7   TFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQV 66

Query: 337 GMIAYRFQTNDGGWQWLQTSSRLVY--KNSKPDFVISTHRPLMEEE 380
               YR     GG+ WL+T   ++Y  +N +P  ++  +  L E E
Sbjct: 67  VSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIE 112


>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 195

 Score = 31.5 bits (70), Expect = 0.19
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 510 DNRLPYENLFHQYRPYYPEYQPYTVSNGFSLPTYEVNKSNDCDKLYCHQT 559
           + ++    L   Y  Y         +        ++NK  D  ++Y H T
Sbjct: 123 EEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,333,939
Number of extensions: 109537
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 6
Length of query: 630
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 539
Effective length of database: 1,158,166
Effective search space: 624251474
Effective search space used: 624251474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.1 bits)