BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8266
(68 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41738|AHR_RAT Aryl hydrocarbon receptor OS=Rattus norvegicus GN=Ahr PE=1 SV=2
Length = 853
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPVPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79
Query: 63 SYF 65
S+F
Sbjct: 80 SFF 82
>sp|Q8R4S5|AHR_MUSMM Aryl hydrocarbon receptor OS=Mus musculus molossinus GN=Ahr PE=2
SV=1
Length = 883
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79
Query: 63 SYF 65
S+F
Sbjct: 80 SFF 82
>sp|Q8R4S4|AHR_MUSSI Aryl hydrocarbon receptor OS=Mus spicilegus GN=Ahr PE=2 SV=1
Length = 854
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79
Query: 63 SYF 65
S+F
Sbjct: 80 SFF 82
>sp|Q8R4S6|AHR_MUSMC Aryl hydrocarbon receptor OS=Mus musculus castaneus GN=Ahr PE=2
SV=1
Length = 848
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79
Query: 63 SYF 65
S+F
Sbjct: 80 SFF 82
>sp|Q8R4S2|AHR_MUSSP Aryl hydrocarbon receptor OS=Mus spretus GN=Ahr PE=2 SV=1
Length = 854
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79
Query: 63 SYF 65
S+F
Sbjct: 80 SFF 82
>sp|P30561|AHR_MOUSE Aryl hydrocarbon receptor OS=Mus musculus GN=Ahr PE=1 SV=3
Length = 848
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79
Query: 63 SYF 65
S+F
Sbjct: 80 SFF 82
>sp|Q8R4S7|AHR_MUSCR Aryl hydrocarbon receptor OS=Mus caroli GN=Ahr PE=2 SV=1
Length = 854
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 21 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 79
Query: 63 SYF 65
S+F
Sbjct: 80 SFF 82
>sp|P35869|AHR_HUMAN Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR PE=1 SV=2
Length = 848
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 22 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 80
Query: 63 SYF 65
S+F
Sbjct: 81 SFF 83
>sp|Q95LD9|AHR_DELLE Aryl hydrocarbon receptor OS=Delphinapterus leucas GN=AHR PE=2
SV=1
Length = 845
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 22 TVKPVPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVVNKLDKLSVLRLSVSYLRAK 80
Query: 63 SYF 65
S+F
Sbjct: 81 SFF 83
>sp|O02747|AHR_RABIT Aryl hydrocarbon receptor OS=Oryctolagus cuniculus GN=AHR PE=2
SV=1
Length = 847
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
Query: 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
++KP P +G+ KSNPSKRHR+RLN ELD LA+LLPF Q++++KLD+LS+LRLSVSYLR K
Sbjct: 22 TVKPIPAEGI-KSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAK 80
Query: 63 SYF 65
S+F
Sbjct: 81 SFF 83
>sp|Q3U1U7|AHRR_MOUSE Aryl hydrocarbon receptor repressor OS=Mus musculus GN=Ahrr PE=1
SV=1
Length = 701
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 50/58 (86%)
Query: 11 GVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQEM 68
G KSNPSKRHR+RLN ELD LA+LLPF +I+SKLD+LS+LRLSVSYLR KS+FQ +
Sbjct: 27 GAEKSNPSKRHRDRLNTELDHLASLLPFSPDIISKLDKLSVLRLSVSYLRVKSFFQAL 84
>sp|Q75NT5|AHRR_RAT Aryl hydrocarbon receptor repressor OS=Rattus norvegicus GN=Ahrr
PE=2 SV=1
Length = 701
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 50/58 (86%)
Query: 11 GVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQEM 68
G KSNPSKRHR+RLN ELD LA+LLPF +I+SKLD+LS+LRLSVSYLR KS+FQ +
Sbjct: 27 GTEKSNPSKRHRDRLNTELDHLASLLPFSPDIISKLDKLSVLRLSVSYLRVKSFFQAL 84
>sp|A9YTQ3|AHRR_HUMAN Aryl hydrocarbon receptor repressor OS=Homo sapiens GN=AHRR PE=2
SV=3
Length = 701
Score = 89.0 bits (219), Expect = 8e-18, Method: Composition-based stats.
Identities = 45/62 (72%), Positives = 52/62 (83%)
Query: 5 KPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSY 64
K P G KSNPSKRHR+RLNAELD LA+LLPF +I+SKLD+LS+LRLSVSYLR KS+
Sbjct: 24 KQRPAVGAEKSNPSKRHRDRLNAELDHLASLLPFPPDIISKLDKLSVLRLSVSYLRVKSF 83
Query: 65 FQ 66
FQ
Sbjct: 84 FQ 85
>sp|O44712|AHR_CAEEL Aryl hydrocarbon receptor protein 1 OS=Caenorhabditis elegans
GN=ahr-1 PE=1 SV=1
Length = 602
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 54/63 (85%), Gaps = 1/63 (1%)
Query: 4 LKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS 63
++ PPK +T +NPSKRHRERLN EL+T+A LLP++ + +S+LD+LS+LRL+VS+L+ K+
Sbjct: 14 VRDPPKQ-LTNTNPSKRHRERLNGELETVAMLLPYDSSTISRLDKLSVLRLAVSFLQCKA 72
Query: 64 YFQ 66
+FQ
Sbjct: 73 HFQ 75
>sp|Q14190|SIM2_HUMAN Single-minded homolog 2 OS=Homo sapiens GN=SIM2 PE=1 SV=2
Length = 667
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
N +K RE+ N E LA LLP I S+LD+ SI+RL+ SYL+ ++ F E
Sbjct: 7 NAAKTRREKENGEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRAVFPE 58
>sp|Q61079|SIM2_MOUSE Single-minded homolog 2 OS=Mus musculus GN=Sim2 PE=1 SV=1
Length = 657
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
N +K RE+ N E LA LLP I S+LD+ SI+RL+ SYL+ ++ F E
Sbjct: 7 NAAKTRREKENGEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRAVFPE 58
>sp|A1YFY6|SIM1_PANPA Single-minded homolog 1 OS=Pan paniscus GN=SIM1 PE=3 SV=1
Length = 766
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
N ++ RE+ N+E LA LLP I S+LD+ SI+RL+ SYL+ + F E
Sbjct: 7 NAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPE 58
>sp|A2T6X9|SIM1_PANTR Single-minded homolog 1 OS=Pan troglodytes GN=SIM1 PE=3 SV=1
Length = 766
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
N ++ RE+ N+E LA LLP I S+LD+ SI+RL+ SYL+ + F E
Sbjct: 7 NAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPE 58
>sp|P81133|SIM1_HUMAN Single-minded homolog 1 OS=Homo sapiens GN=SIM1 PE=2 SV=2
Length = 766
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
N ++ RE+ N+E LA LLP I S+LD+ SI+RL+ SYL+ + F E
Sbjct: 7 NAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPE 58
>sp|Q61045|SIM1_MOUSE Single-minded homolog 1 OS=Mus musculus GN=Sim1 PE=1 SV=3
Length = 765
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
N ++ RE+ N+E LA LLP I S+LD+ SI+RL+ SYL+ + F E
Sbjct: 7 NAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPE 58
>sp|P05709|SIM_DROME Protein single-minded OS=Drosophila melanogaster GN=sim PE=1 SV=3
Length = 697
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYF 65
N ++ RE+ N E LA LLP I S+LD+ S++RL+ SYL+ + F
Sbjct: 31 NAARTRREKENTEFCELAKLLPLPAAITSQLDKASVIRLTTSYLKMRQVF 80
>sp|Q99742|NPAS1_HUMAN Neuronal PAS domain-containing protein 1 OS=Homo sapiens GN=NPAS1
PE=2 SV=2
Length = 590
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSY 64
N ++ R + N E LA LLP I S+LD+ SI+RLSV+YLR + +
Sbjct: 52 NAARSRRGKENLEFFELAKLLPLPGAISSQLDKASIVRLSVTYLRLRRF 100
>sp|Q98SJ5|SIM1A_DANRE Single-minded homolog 1-A OS=Danio rerio GN=sim1a PE=2 SV=1
Length = 745
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
N + RE+ N+E LA LLP I S+ D+ SI+RL+ SYL+ + F E
Sbjct: 7 NAGRTRREKENSEFYELAKLLPLPSAITSQSDKASIIRLTTSYLKMRIVFPE 58
>sp|P97459|NPAS1_MOUSE Neuronal PAS domain-containing protein 1 OS=Mus musculus GN=Npas1
PE=1 SV=1
Length = 594
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSY 64
N ++ R + N E LA LLP I S+LD+ SI+RLSV+YLR + +
Sbjct: 52 NAARWRRGKENLEFFELAKLLPLPGAISSQLDKASIVRLSVTYLRLRRF 100
>sp|Q91YA9|BMAL1_NANGA Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Nannospalax galili GN=Arntl PE=1 SV=1
Length = 626
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
KR R+++N+ +D LA+L+P + KLD+L++LR++V +++T
Sbjct: 82 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 124
>sp|Q9EPW1|BMAL1_RAT Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Rattus norvegicus GN=Arntl PE=2 SV=4
Length = 626
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
KR R+++N+ +D LA+L+P + KLD+L++LR++V +++T
Sbjct: 82 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 124
>sp|O88529|BMAL1_MESAU Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mesocricetus auratus GN=ARNTL PE=2 SV=1
Length = 626
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
KR R+++N+ +D LA+L+P + KLD+L++LR++V +++T
Sbjct: 82 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 124
>sp|O00327|BMAL1_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Homo sapiens GN=ARNTL PE=1 SV=2
Length = 626
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
KR R+++N+ +D LA+L+P + KLD+L++LR++V +++T
Sbjct: 82 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 124
>sp|A0MLS5|BMAL1_HORSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Equus caballus GN=ARNTL PE=2 SV=1
Length = 626
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
KR R+++N+ +D LA+L+P + KLD+L++LR++V +++T
Sbjct: 82 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 124
>sp|Q5R4T2|BMAL1_PONAB Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Pongo abelii GN=ARNTL PE=2 SV=1
Length = 625
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
KR R+++N+ +D LA+L+P + KLD+L++LR++V +++T
Sbjct: 82 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 124
>sp|Q6YGZ5|BMAL1_TYTAL Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Tyto alba GN=ARNTL PE=2 SV=1
Length = 633
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
KR R+++N+ +D LA+L+P + KLD+L++LR++V +++T
Sbjct: 89 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 131
>sp|Q9WTL8|BMAL1_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mus musculus GN=Arntl PE=1 SV=2
Length = 632
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
KR R+++N+ +D LA+L+P + KLD+L++LR++V +++T
Sbjct: 89 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 131
>sp|Q9I8T7|BMAL1_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Gallus gallus GN=ARNTL PE=1 SV=1
Length = 633
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
KR R+++N+ +D LA+L+P + KLD+L++LR++V +++T
Sbjct: 89 KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKT 131
>sp|Q9QZQ0|NPAS3_MOUSE Neuronal PAS domain-containing protein 3 OS=Mus musculus GN=Npas3
PE=2 SV=1
Length = 925
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 18 SKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
++ R + N E LA LLP I S+LD+ SI+RL++SYL+ + + +
Sbjct: 67 ARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQ 116
>sp|Q8IXF0|NPAS3_HUMAN Neuronal PAS domain-containing protein 3 OS=Homo sapiens GN=NPAS3
PE=2 SV=1
Length = 933
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 18 SKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
++ R + N E LA LLP I S+LD+ SI+RL++SYL+ + + +
Sbjct: 60 ARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQ 109
>sp|Q24119|TRH_DROME Protein trachealess OS=Drosophila melanogaster GN=trh PE=1 SV=4
Length = 1022
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSY 64
+ ++ R + N E LA +LP I S+LD+ SI+RL++SYL+ + +
Sbjct: 93 DAARSRRGKENYEFYELAKMLPLPAAITSQLDKASIIRLTISYLKLRDF 141
>sp|Q9Y2N7|HIF3A_HUMAN Hypoxia-inducible factor 3-alpha OS=Homo sapiens GN=HIF3A PE=1
SV=2
Length = 669
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 14 KSNPSKRHRERLNAE-LDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
KS + R R E L LA+ LPF + + + LD+ SI+RL++SYLR
Sbjct: 18 KSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLR 65
>sp|Q0VBL6|HIF3A_MOUSE Hypoxia-inducible factor 3-alpha OS=Mus musculus GN=Hif3a PE=1
SV=2
Length = 662
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 14 KSNPSKRHRERLNAE-LDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
KS + R R E L LA+ LPF + + + LD+ SI+RL++SYLR
Sbjct: 16 KSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLR 63
>sp|Q9JHS2|HIF3A_RAT Hypoxia-inducible factor 3-alpha OS=Rattus norvegicus GN=Hif3a
PE=1 SV=1
Length = 662
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 14 KSNPSKRHRERLNAE-LDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
KS + R R E L LA+ LPF + + + LD+ SI+RL++SYLR
Sbjct: 16 KSRDAARSRRSQETEVLYQLAHTLPFARGVSAHLDKASIMRLTISYLR 63
>sp|O61734|CYCL_DROME Protein cycle OS=Drosophila melanogaster GN=cyc PE=2 SV=2
Length = 413
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 32/46 (69%)
Query: 15 SNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
S KR R+++N ++ L++++P + KLD+L++LR++V +LR
Sbjct: 36 SEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLR 81
>sp|O35800|HIF1A_RAT Hypoxia-inducible factor 1-alpha OS=Rattus norvegicus GN=Hif1a
PE=2 SV=1
Length = 825
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 14 KSNPSKRHRERLNAEL-DTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
KS + R R +E+ LA+ LP N+ S LD+ S++RL++SYLR +
Sbjct: 21 KSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVMRLTISYLRVR 70
>sp|Q309Z6|HIF1A_EOSBA Hypoxia-inducible factor 1-alpha OS=Eospalax baileyi GN=HIF1A
PE=2 SV=1
Length = 819
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 14 KSNPSKRHRERLNAEL-DTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
KS + R R +E+ LA+ LP N+ S LD+ S++RL++SYLR +
Sbjct: 22 KSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVMRLTISYLRVR 71
>sp|Q16665|HIF1A_HUMAN Hypoxia-inducible factor 1-alpha OS=Homo sapiens GN=HIF1A PE=1
SV=1
Length = 826
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 14 KSNPSKRHRERLNAEL-DTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
KS + R R +E+ LA+ LP N+ S LD+ S++RL++SYLR +
Sbjct: 21 KSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVMRLTISYLRVR 70
>sp|Q0PGG7|HIF1A_BOSMU Hypoxia-inducible factor 1-alpha OS=Bos mutus grunniens GN=HIF1A
PE=2 SV=1
Length = 823
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 14 KSNPSKRHRERLNAEL-DTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
KS + R R +E+ LA+ LP N+ S LD+ S++RL++SYLR +
Sbjct: 21 KSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVMRLTISYLRVR 70
>sp|Q61221|HIF1A_MOUSE Hypoxia-inducible factor 1-alpha OS=Mus musculus GN=Hif1a PE=1
SV=3
Length = 836
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 14 KSNPSKRHRERLNAEL-DTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
KS + R R +E+ LA+ LP N+ S LD+ S++RL++SYLR +
Sbjct: 21 KSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVMRLTISYLRVR 70
>sp|Q9XTA5|HIF1A_BOVIN Hypoxia-inducible factor 1-alpha OS=Bos taurus GN=HIF1A PE=2 SV=1
Length = 823
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 14 KSNPSKRHRERLNAEL-DTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62
KS + R R +E+ LA+ LP N+ S LD+ S++RL++SYLR +
Sbjct: 21 KSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVMRLTISYLRVR 70
>sp|Q2VPD4|BMAL2_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Mus musculus GN=Arntl2 PE=2 SV=2
Length = 579
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
KR R+++N + L++++P KLD+LS+LR +V YLR+
Sbjct: 58 KRRRDKMNHLIQKLSSMIPPHIPTAHKLDKLSVLRRAVQYLRS 100
>sp|Q8WYA1|BMAL2_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Homo sapiens GN=ARNTL2 PE=1 SV=2
Length = 636
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 15 SNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
S KR R+++N ++ L+ ++P + KLD+L++LR++V +LR+
Sbjct: 113 SQTEKRRRDKMNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLRS 159
>sp|Q1ECW2|NPAS4_DANRE Neuronal PAS domain-containing protein 4 OS=Danio rerio GN=npas4
PE=2 SV=1
Length = 933
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 18 SKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQE 67
SK R+++NAE+ L +LLP S+L L I+ L+ Y R +F +
Sbjct: 9 SKARRDQINAEIRNLKDLLPISDADKSRLSYLHIMSLACMYTRKSVFFSQ 58
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2
Length = 518
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
Query: 8 PKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYL 59
P++ ++ +R RE+LN + TL +++PF ++K+D++SIL +++Y+
Sbjct: 358 PREDLSHVVAERRRREKLNEKFITLRSMVPF----VTKMDKVSILGDTIAYV 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,192,693
Number of Sequences: 539616
Number of extensions: 640885
Number of successful extensions: 2470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 2378
Number of HSP's gapped (non-prelim): 124
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)