Query psy8266
Match_columns 68
No_of_seqs 107 out of 305
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 22:57:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3558|consensus 99.7 1.2E-18 2.5E-23 140.5 4.0 54 13-66 49-102 (768)
2 KOG3560|consensus 99.7 4.6E-18 1E-22 135.3 4.6 63 3-66 19-81 (712)
3 KOG3559|consensus 99.5 2.7E-14 5.9E-19 111.8 3.4 54 13-66 4-57 (598)
4 PF00010 HLH: Helix-loop-helix 99.3 1.5E-12 3.2E-17 73.7 4.1 48 14-61 5-53 (55)
5 KOG3561|consensus 99.3 2E-12 4.2E-17 105.7 5.2 53 13-65 23-75 (803)
6 cd00083 HLH Helix-loop-helix d 99.3 5.5E-12 1.2E-16 71.1 5.5 50 13-63 7-56 (60)
7 smart00353 HLH helix loop heli 99.3 7.5E-12 1.6E-16 69.6 5.5 46 16-62 2-47 (53)
8 KOG4304|consensus 99.2 1.3E-11 2.9E-16 89.5 4.1 51 14-64 36-90 (250)
9 KOG1318|consensus 98.3 6.7E-07 1.5E-11 69.3 4.1 48 14-61 237-284 (411)
10 KOG1319|consensus 97.4 0.0003 6.4E-09 51.0 4.7 48 14-61 66-116 (229)
11 KOG4029|consensus 97.4 0.00015 3.3E-09 51.0 2.8 49 17-65 116-164 (228)
12 KOG2483|consensus 96.1 0.016 3.5E-07 42.1 5.5 47 14-61 63-109 (232)
13 KOG0561|consensus 96.0 0.013 2.7E-07 45.2 4.6 42 18-61 68-109 (373)
14 KOG2588|consensus 95.9 0.0079 1.7E-07 51.1 3.5 46 13-61 279-324 (953)
15 KOG3960|consensus 95.8 0.021 4.5E-07 42.9 4.9 43 17-61 125-167 (284)
16 PLN03217 transcription factor 95.3 0.026 5.7E-07 36.4 3.5 41 21-61 18-60 (93)
17 KOG4395|consensus 75.4 6.1 0.00013 29.9 4.3 43 18-61 182-224 (285)
18 KOG3898|consensus 71.7 3.1 6.8E-05 30.3 2.1 47 16-63 78-124 (254)
19 KOG4447|consensus 53.0 8 0.00017 27.4 1.2 42 17-60 85-126 (173)
20 KOG3910|consensus 35.8 30 0.00066 28.7 2.2 37 23-59 539-575 (632)
21 KOG3197|consensus 27.9 1.4E+02 0.0031 21.8 4.3 52 7-62 98-169 (210)
22 PF13309 HTH_22: HTH domain 27.7 90 0.0019 17.9 2.8 38 24-65 2-39 (64)
23 PF02344 Myc-LZ: Myc leucine z 26.1 82 0.0018 16.7 2.2 17 18-34 13-29 (32)
No 1
>KOG3558|consensus
Probab=99.74 E-value=1.2e-18 Score=140.49 Aligned_cols=54 Identities=37% Similarity=0.624 Sum_probs=52.7
Q ss_pred CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhhh
Q psy8266 13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQ 66 (68)
Q Consensus 13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~~ 66 (68)
+||+|+|+||.|||++|+||+.+||++++++++||||||||+||+|||+++|+.
T Consensus 49 kSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlrk~a~ 102 (768)
T KOG3558|consen 49 KSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLRKFAG 102 (768)
T ss_pred hhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999999999999999999999999999999999975
No 2
>KOG3560|consensus
Probab=99.72 E-value=4.6e-18 Score=135.32 Aligned_cols=63 Identities=76% Similarity=1.177 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhhh
Q psy8266 3 SLKPPPKDGVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQ 66 (68)
Q Consensus 3 ~~k~~p~~~~~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~~ 66 (68)
+.+|+|+. +.++|.+||+|||+|.+++.|++|||++.++++||||+|||||+|+|||++.||+
T Consensus 19 k~rpp~~a-~tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFq 81 (712)
T KOG3560|consen 19 KQRPPPKA-LTKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQ 81 (712)
T ss_pred ccCCCccc-cccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence 45666666 6799999999999999999999999999999999999999999999999999997
No 3
>KOG3559|consensus
Probab=99.47 E-value=2.7e-14 Score=111.79 Aligned_cols=54 Identities=41% Similarity=0.661 Sum_probs=51.9
Q ss_pred CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhhh
Q psy8266 13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQ 66 (68)
Q Consensus 13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~~ 66 (68)
++.++++.||+++|.+|.+|+.+||++.++.++|||+||+|||.+|||++++|.
T Consensus 4 kSKnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vFP 57 (598)
T KOG3559|consen 4 KSKNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVFP 57 (598)
T ss_pred cchhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhcc
Confidence 577899999999999999999999999999999999999999999999999994
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.34 E-value=1.5e-12 Score=73.71 Aligned_cols=48 Identities=31% Similarity=0.547 Sum_probs=42.6
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCC-CccccchHHHHHHHHHHHHHHh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFE-QNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~-~~~~~kLDKaSILrlti~yLk~ 61 (68)
+...||+||+++|+.|.+|..+||.+ .....++||++||+.||+|++.
T Consensus 5 h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~ 53 (55)
T PF00010_consen 5 HNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQ 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999974 2456889999999999999975
No 5
>KOG3561|consensus
Probab=99.32 E-value=2e-12 Score=105.72 Aligned_cols=53 Identities=28% Similarity=0.501 Sum_probs=49.4
Q ss_pred CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhh
Q psy8266 13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYF 65 (68)
Q Consensus 13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~ 65 (68)
.++.+|||||||+|..|+||+.|||-+.+..+|+||..|||+||+|||.++.+
T Consensus 23 ~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 23 NRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 46779999999999999999999998888889999999999999999998765
No 6
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.31 E-value=5.5e-12 Score=71.07 Aligned_cols=50 Identities=34% Similarity=0.536 Sum_probs=44.4
Q ss_pred CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266 13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS 63 (68)
Q Consensus 13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~ 63 (68)
.+..+||.||+++|+.|.+|..+||... ...++||++||..||+|++...
T Consensus 7 ~~~~~Er~RR~~~n~~~~~L~~llp~~~-~~~k~~k~~iL~~a~~yI~~L~ 56 (60)
T cd00083 7 AHNLRERRRRERINDAFDELRSLLPTLP-PSKKLSKAEILRKAVDYIKSLQ 56 (60)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Confidence 4667999999999999999999999644 4689999999999999998754
No 7
>smart00353 HLH helix loop helix domain.
Probab=99.30 E-value=7.5e-12 Score=69.61 Aligned_cols=46 Identities=33% Similarity=0.582 Sum_probs=41.3
Q ss_pred hhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62 (68)
Q Consensus 16 ~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~ 62 (68)
.+||+||+++|+.|.+|+.+||... ...++||++||..||+|++..
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~-~~~k~~k~~iL~~ai~yi~~L 47 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLP-NNKKLSKAEILRLAIEYIKSL 47 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999544 678999999999999999753
No 8
>KOG4304|consensus
Probab=99.20 E-value=1.3e-11 Score=89.48 Aligned_cols=51 Identities=37% Similarity=0.501 Sum_probs=43.6
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCC--CC--ccccchHHHHHHHHHHHHHHhhhh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPF--EQ--NILSKLDRLSILRLSVSYLRTKSY 64 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~--~~--~~~~kLDKaSILrlti~yLk~~~~ 64 (68)
+.-.||+||||||+.+++|+.|||- .. ...+|||||.||++||.||+..+-
T Consensus 36 Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~ 90 (250)
T KOG4304|consen 36 KPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQR 90 (250)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhc
Confidence 4458999999999999999999992 22 355899999999999999998653
No 9
>KOG1318|consensus
Probab=98.31 E-value=6.7e-07 Score=69.31 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=43.9
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~ 61 (68)
|-..|||||++||+-|.+|..|||-+.....++.|..||.-+++|++.
T Consensus 237 HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~ 284 (411)
T KOG1318|consen 237 HNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRE 284 (411)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHH
Confidence 345899999999999999999999887777899999999999999985
No 10
>KOG1319|consensus
Probab=97.40 E-value=0.0003 Score=51.02 Aligned_cols=48 Identities=23% Similarity=0.430 Sum_probs=41.2
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCCCccc---cchHHHHHHHHHHHHHHh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFEQNIL---SKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~---~kLDKaSILrlti~yLk~ 61 (68)
+..+|++|||-+|.-.+.|..|+|.+.... -||.||-||.-||+|+..
T Consensus 66 HtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~ 116 (229)
T KOG1319|consen 66 HTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQF 116 (229)
T ss_pred HHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 445889999999999999999999766433 399999999999999754
No 11
>KOG4029|consensus
Probab=97.37 E-value=0.00015 Score=51.01 Aligned_cols=49 Identities=29% Similarity=0.460 Sum_probs=41.9
Q ss_pred hHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhh
Q psy8266 17 PSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYF 65 (68)
Q Consensus 17 aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~ 65 (68)
.||.|=...|.-|.+|+.+||......++|-|.++||+||+|++....+
T Consensus 116 RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~l 164 (228)
T KOG4029|consen 116 RERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKL 164 (228)
T ss_pred hhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHH
Confidence 5777778999999999999996554489999999999999999986543
No 12
>KOG2483|consensus
Probab=96.13 E-value=0.016 Score=42.13 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=37.5
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~ 61 (68)
+-.-||+||+.+.+.|+.|+.+||.-.+..++- -++||.-|..|+..
T Consensus 63 HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t-~lsiL~kA~~~i~~ 109 (232)
T KOG2483|consen 63 HNALEKRRRAHLKDCFESLKDSVPLLNGETRST-TLSILDKALEHIQS 109 (232)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhh-hhHhhhhHHHHHHH
Confidence 344799999999999999999999755443332 78899888888764
No 13
>KOG0561|consensus
Probab=96.00 E-value=0.013 Score=45.20 Aligned_cols=42 Identities=29% Similarity=0.489 Sum_probs=34.2
Q ss_pred HHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266 18 SKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 18 eK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~ 61 (68)
||||=.-+|.=|..|+.|||. .-..||.||.||+-|.+|+--
T Consensus 68 ERRRMQSINAGFqsLr~LlPr--~eGEKLSKAAILQQTa~yI~~ 109 (373)
T KOG0561|consen 68 ERRRMQSINAGFQSLRALLPR--KEGEKLSKAAILQQTADYIHQ 109 (373)
T ss_pred HHHHHHhhhHHHHHHHHhcCc--ccchhhHHHHHHHHHHHHHHH
Confidence 344446789999999999994 345799999999999999753
No 14
>KOG2588|consensus
Probab=95.93 E-value=0.0079 Score=51.05 Aligned_cols=46 Identities=26% Similarity=0.490 Sum_probs=41.3
Q ss_pred CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266 13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~ 61 (68)
.|--.|||.|.-+|+.|.+|++++| ....++-|.++||-||+|++-
T Consensus 279 AHN~IEKRYRsSINDKI~eLk~lV~---g~~aKl~kSavLr~ai~~i~d 324 (953)
T KOG2588|consen 279 AHNIIEKRYRSSINDKIIELKDLVP---GTEAKLNKSAVLRKAIDYIED 324 (953)
T ss_pred hhhHHHHHhhcchhHHHHHHHHhcC---ccHhhhhhhhhHHHHHHHHHH
Confidence 3455899999999999999999999 466899999999999999875
No 15
>KOG3960|consensus
Probab=95.81 E-value=0.021 Score=42.89 Aligned_cols=43 Identities=23% Similarity=0.445 Sum_probs=35.1
Q ss_pred hHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266 17 PSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 17 aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~ 61 (68)
-||||=.|.||.|+.|++--- .+...+|=|..|||-||.|+.-
T Consensus 125 RERRRLkKVNEAFE~LKRrT~--~NPNQRLPKVEILRsAI~YIE~ 167 (284)
T KOG3960|consen 125 RERRRLKKVNEAFETLKRRTS--SNPNQRLPKVEILRSAIRYIER 167 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--CCccccccHHHHHHHHHHHHHH
Confidence 577777999999999997542 1335799999999999999864
No 16
>PLN03217 transcription factor ATBS1; Provisional
Probab=95.32 E-value=0.026 Score=36.37 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=33.3
Q ss_pred hHHHhHHHHHHHHhcCCCCCc--cccchHHHHHHHHHHHHHHh
Q psy8266 21 HRERLNAELDTLANLLPFEQN--ILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 21 RRdk~N~~~~~L~~lLP~~~~--~~~kLDKaSILrlti~yLk~ 61 (68)
=-|++|+.+..|..+||-... ...+..-+-||+.|++|+|-
T Consensus 18 sddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrs 60 (93)
T PLN03217 18 SEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60 (93)
T ss_pred CHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHH
Confidence 359999999999999994332 33577778899999999985
No 17
>KOG4395|consensus
Probab=75.40 E-value=6.1 Score=29.92 Aligned_cols=43 Identities=23% Similarity=0.458 Sum_probs=35.7
Q ss_pred HHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266 18 SKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 18 eK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~ 61 (68)
|++|=.-+|..|+.|...+| +.+..++|.|-.-|.++-.|+-.
T Consensus 182 Errrm~gLN~AfD~Lr~v~p-~~~~d~~LSkyetLqmaq~yi~~ 224 (285)
T KOG4395|consen 182 ERRRMNGLNSAFDRLRLVVP-DGDSDKKLSKYETLQMAQGYILA 224 (285)
T ss_pred HHHHhhhHHHHHHHHHHhcC-CCCccchhhhhhHHHHHHHHHhh
Confidence 44444678999999999999 45567899999999999999765
No 18
>KOG3898|consensus
Probab=71.73 E-value=3.1 Score=30.26 Aligned_cols=47 Identities=28% Similarity=0.454 Sum_probs=38.0
Q ss_pred hhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS 63 (68)
Q Consensus 16 ~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~ 63 (68)
.-||+|=--+|+.|+.|..++|. ..-..+|-|+..|+++-+|+-...
T Consensus 78 aRER~RMH~LNdAld~LReviP~-~~~~~klskIetl~~a~~yi~als 124 (254)
T KOG3898|consen 78 ARERTRMHDLNDALDALREVIPH-GLHPPKLSKIETLRLAANYIAALS 124 (254)
T ss_pred chhhccccchhHHHHHhHhhccC-cCCCCCCCcchhHHhhhcchhhhc
Confidence 35666667789999999999995 445689999999999999976543
No 19
>KOG4447|consensus
Probab=53.02 E-value=8 Score=27.41 Aligned_cols=42 Identities=21% Similarity=0.464 Sum_probs=34.6
Q ss_pred hHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHH
Q psy8266 17 PSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60 (68)
Q Consensus 17 aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk 60 (68)
-|+.|=.-+|+.|..|...+|- ..+.+|.|+.-|.+|.-|+-
T Consensus 85 rerqRtqsLn~AF~~lr~iipt--lPsdklSkiqtLklA~ryid 126 (173)
T KOG4447|consen 85 RERQRTQSLNEAFAALRKIIPT--LPSDKLSKIQTLKLAARYID 126 (173)
T ss_pred HHHHhhhhHHHHHHHHHhhcCC--CCccccccccchhhcccCCc
Confidence 5778888899999999999992 33578888889999988754
No 20
>KOG3910|consensus
Probab=35.76 E-value=30 Score=28.69 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=29.1
Q ss_pred HHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHH
Q psy8266 23 ERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYL 59 (68)
Q Consensus 23 dk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yL 59 (68)
.-|||.|.||-+|.=+.-.+-.-=-|+-||-.||+-+
T Consensus 539 RDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVI 575 (632)
T KOG3910|consen 539 RDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVI 575 (632)
T ss_pred hhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHH
Confidence 4589999999999865555555556889999999875
No 21
>KOG3197|consensus
Probab=27.93 E-value=1.4e+02 Score=21.82 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=35.8
Q ss_pred CCCCCCCCchhHHHhHHHhHHHHHHHHhcCCC--------------CC------ccccchHHHHHHHHHHHHHHhh
Q psy8266 7 PPKDGVTKSNPSKRHRERLNAELDTLANLLPF--------------EQ------NILSKLDRLSILRLSVSYLRTK 62 (68)
Q Consensus 7 ~p~~~~~~~~aeK~RRdk~N~~~~~L~~lLP~--------------~~------~~~~kLDKaSILrlti~yLk~~ 62 (68)
.|..++ +.-||.|| +-+.+..++++||- .+ .....|||...+=-+..|=+..
T Consensus 98 tP~~~v--sKeeK~rr--e~eamk~ic~~l~~~~~akEi~elw~eYE~~ss~Eak~VKdlDK~eMi~QafEYE~~~ 169 (210)
T KOG3197|consen 98 TPSDGV--SKEEKHRR--EFEAMKYICQLLIGELRAKEITELWLEYEEASSLEAKFVKDLDKFEMIVQAFEYEKKH 169 (210)
T ss_pred CCCCCc--cHHHHHHH--HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCchhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 455555 23677776 57788899999982 11 1225899999998888887553
No 22
>PF13309 HTH_22: HTH domain
Probab=27.74 E-value=90 Score=17.90 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=26.0
Q ss_pred HhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhh
Q psy8266 24 RLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYF 65 (68)
Q Consensus 24 k~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~ 65 (68)
.+++.|.+...-+..+....++-||..|++ +|.-+.+|
T Consensus 2 ~i~~~i~~~~~~~~~~~~~l~~~~k~~iV~----~L~~~G~F 39 (64)
T PF13309_consen 2 LIESIIEEVIAEVGKPPSRLSKEEKKEIVR----QLYEKGIF 39 (64)
T ss_pred hHHHHHHHHHHHhCCChhhCCHHHHHHHHH----HHHHCCCc
Confidence 456677777777776667778888888854 55555555
No 23
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=26.08 E-value=82 Score=16.69 Aligned_cols=17 Identities=41% Similarity=0.683 Sum_probs=12.1
Q ss_pred HHHhHHHhHHHHHHHHh
Q psy8266 18 SKRHRERLNAELDTLAN 34 (68)
Q Consensus 18 eK~RRdk~N~~~~~L~~ 34 (68)
=|+||+++...+.+|.+
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 36788888888888764
Done!