Query psy8266
Match_columns 68
No_of_seqs 107 out of 305
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 22:57:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h10_A ARYL hydrocarbon recept 99.7 1.7E-17 5.9E-22 100.6 1.8 53 14-66 13-65 (73)
2 4f3l_A Mclock, circadian locom 99.6 2.5E-15 8.5E-20 107.7 5.5 53 11-66 13-65 (361)
3 4f3l_B BMAL1B; BHLH, PAS, circ 99.5 4E-15 1.4E-19 108.1 2.0 50 14-63 17-66 (387)
4 4h10_B Circadian locomoter out 99.5 3.2E-14 1.1E-18 86.1 5.4 47 14-63 12-58 (71)
5 1a0a_A BHLH, protein (phosphat 99.3 1.3E-12 4.3E-17 76.8 3.9 52 11-62 3-57 (63)
6 1an4_A Protein (upstream stimu 99.3 5.4E-13 1.9E-17 77.6 1.9 52 11-62 6-59 (65)
7 1am9_A Srebp-1A, protein (ster 99.2 7.6E-12 2.6E-16 76.2 4.4 45 14-61 10-54 (82)
8 4ati_A MITF, microphthalmia-as 99.2 9.4E-12 3.2E-16 80.4 5.0 50 13-62 30-79 (118)
9 1nkp_B MAX protein, MYC proto- 99.1 8.7E-11 3E-15 71.0 4.5 47 14-62 6-52 (83)
10 1hlo_A Protein (transcription 99.1 1.2E-10 4.3E-15 70.1 4.4 47 14-62 16-62 (80)
11 1nkp_A C-MYC, MYC proto-oncoge 98.9 1.1E-09 3.6E-14 67.7 4.7 48 14-62 10-57 (88)
12 1mdy_A Protein (MYOD BHLH doma 98.8 7E-09 2.4E-13 61.8 5.4 47 15-63 17-63 (68)
13 2ql2_B Neurod1, neurogenic dif 98.7 2.3E-08 7.8E-13 58.2 5.7 47 16-63 8-54 (60)
14 3u5v_A Protein MAX, transcript 98.7 4.3E-09 1.5E-13 63.8 2.5 50 12-61 7-56 (76)
15 1nlw_A MAD protein, MAX dimeri 98.7 2E-08 7E-13 61.1 5.1 46 15-61 6-51 (80)
16 2lfh_A DNA-binding protein inh 98.6 2.3E-08 7.9E-13 60.2 3.1 47 16-63 20-66 (68)
17 4ath_A MITF, microphthalmia-as 98.1 3.2E-06 1.1E-10 52.4 4.8 41 22-62 4-44 (83)
18 4aya_A DNA-binding protein inh 97.9 3.3E-05 1.1E-09 49.0 5.7 45 18-63 33-77 (97)
19 1p3q_Q VPS9P, vacuolar protein 55.2 13 0.00046 20.7 3.1 23 15-37 2-24 (54)
20 2ket_A Cathelicidin-6; antimic 23.6 41 0.0014 16.3 1.4 20 19-38 4-23 (27)
21 3muj_A Transcription factor CO 22.2 1.5E+02 0.0051 19.3 4.4 37 25-61 96-132 (138)
22 1g70_B RSG-1.2 peptide; peptid 20.8 50 0.0017 15.9 1.4 12 12-23 7-18 (26)
No 1
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.66 E-value=1.7e-17 Score=100.58 Aligned_cols=53 Identities=34% Similarity=0.510 Sum_probs=47.4
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhhh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQ 66 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~~ 66 (68)
+..+||+||+++|+.|.+|+.|||.+.+..+++||++||++||+||+....|.
T Consensus 13 H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~~ 65 (73)
T 4h10_A 13 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAW 65 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcCc
Confidence 45689999999999999999999976666789999999999999999987764
No 2
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.56 E-value=2.5e-15 Score=107.68 Aligned_cols=53 Identities=25% Similarity=0.513 Sum_probs=44.3
Q ss_pred CCCCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhhhhh
Q psy8266 11 GVTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQ 66 (68)
Q Consensus 11 ~~~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~~~~ 66 (68)
+..+..+||+|||++|+.|.+|+.||| +..+||||++||++||+|||.++.+.
T Consensus 13 ~~~~~~~e~~rr~~~n~~~~~l~~~~p---~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 13 RVSRNKSEKKRRDQFNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCC---SSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCC---CCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 334667999999999999999999999 46789999999999999999988774
No 3
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.50 E-value=4e-15 Score=108.07 Aligned_cols=50 Identities=36% Similarity=0.600 Sum_probs=46.1
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS 63 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~ 63 (68)
++.+||+|||++|+.|.+|+.|||.+.+..+||||++||++||+|||..+
T Consensus 17 ~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~ 66 (387)
T 4f3l_B 17 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence 45689999999999999999999988888899999999999999999754
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=86.13 Aligned_cols=47 Identities=26% Similarity=0.585 Sum_probs=42.0
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS 63 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~ 63 (68)
+..+||+||+++|+.|.+|+.||| +..+++||++||+.||+||+..+
T Consensus 12 Hn~iErrRRd~IN~~i~eL~~LvP---~~~~K~dK~sIL~~aI~yik~Lq 58 (71)
T 4h10_B 12 RNKSEKKRRDQFNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHK 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSS---SCCSCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHHhCC---CCCCCCcHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999 34579999999999999999754
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.32 E-value=1.3e-12 Score=76.84 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=43.7
Q ss_pred CCCCchhHHHhHHHhHHHHHHHHhcCCCCC---ccccchHHHHHHHHHHHHHHhh
Q psy8266 11 GVTKSNPSKRHRERLNAELDTLANLLPFEQ---NILSKLDRLSILRLSVSYLRTK 62 (68)
Q Consensus 11 ~~~~~~aeK~RRdk~N~~~~~L~~lLP~~~---~~~~kLDKaSILrlti~yLk~~ 62 (68)
+..+..+||+||+++|..|.+|..|||-.. ...++++||+||.+||.|++..
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~L 57 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHL 57 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHH
Confidence 345677999999999999999999999322 2257999999999999999864
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.30 E-value=5.4e-13 Score=77.62 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=44.2
Q ss_pred CCCCchhHHHhHHHhHHHHHHHHhcCCCCCcc--ccchHHHHHHHHHHHHHHhh
Q psy8266 11 GVTKSNPSKRHRERLNAELDTLANLLPFEQNI--LSKLDRLSILRLSVSYLRTK 62 (68)
Q Consensus 11 ~~~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~--~~kLDKaSILrlti~yLk~~ 62 (68)
...+..+||+||+++|+.|.+|..+||-.... ..++||++||..||+|++..
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~L 59 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHH
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHH
Confidence 44577899999999999999999999954432 24899999999999999864
No 7
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.23 E-value=7.6e-12 Score=76.21 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=40.7
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~ 61 (68)
+..+||+||+++|+.|.+|..+||- ...++||++||..||.|++.
T Consensus 10 H~~~ErrRR~~in~~f~~L~~lvP~---~~~k~~Ka~IL~~Ai~YI~~ 54 (82)
T 1am9_A 10 HNAIEKRYRSSINDKIIELKDLVVG---TEAKLNKSAVLRKAIDYIRF 54 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---SSCCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccC---CCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999993 34899999999999999986
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.23 E-value=9.4e-12 Score=80.42 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=41.5
Q ss_pred CCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266 13 TKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62 (68)
Q Consensus 13 ~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~ 62 (68)
.+..+||+||+++|+.|.+|..+||-......++||++||..||.|++..
T Consensus 30 ~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~L 79 (118)
T 4ati_A 30 NHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKL 79 (118)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHH
Confidence 35679999999999999999999996655567999999999999999863
No 9
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.10 E-value=8.7e-11 Score=70.98 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=40.9
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~ 62 (68)
+...||+||+.+|+.|.+|..+||... ..++||++||+.||.|++.-
T Consensus 6 hn~~Er~RR~~in~~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L 52 (83)
T 1nkp_B 6 HNALERKRRDHIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYM 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSGGGT--TSCCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999999432 47899999999999999863
No 10
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.07 E-value=1.2e-10 Score=70.09 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=40.8
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~ 62 (68)
+...||+||+.+|+.|.+|+.+||... ..+++|++||+.||.|++..
T Consensus 16 hn~~Er~RR~~in~~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L 62 (80)
T 1hlo_A 16 HNALERKRRDHIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYM 62 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSGGGT--TSCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCcCCC--CCCccHHHHHHHHHHHHHHH
Confidence 345899999999999999999999433 36899999999999999863
No 11
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.93 E-value=1.1e-09 Score=67.66 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=41.1
Q ss_pred CchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266 14 KSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62 (68)
Q Consensus 14 ~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~ 62 (68)
+-.+||+||+.+|+.|..|..+||... ...++||++||+.||.|++.-
T Consensus 10 Hn~~ER~RR~~ln~~f~~Lr~~vP~~~-~~~K~sK~~iL~~A~~YI~~L 57 (88)
T 1nkp_A 10 HNVLERQRRNELKRSFFALRDQIPELE-NNEKAPKVVILKKATAYILSV 57 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCGGGT-TCTTCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999999422 246999999999999999863
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.82 E-value=7e-09 Score=61.78 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=40.9
Q ss_pred chhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266 15 SNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS 63 (68)
Q Consensus 15 ~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~ 63 (68)
...||+|+..+|+.|..|..+||... ..+|.|++||++||+|+..-.
T Consensus 17 N~rER~R~~~iN~af~~LR~~iP~~~--~~KlSKi~tLr~Ai~YI~~L~ 63 (68)
T 1mdy_A 17 TMRERRRLSKVNEAFETLKRSTSSNP--NQRLPKVEILRNAIRYIEGLQ 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSCT--TSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999543 579999999999999987643
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.74 E-value=2.3e-08 Score=58.16 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=40.9
Q ss_pred hhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS 63 (68)
Q Consensus 16 ~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~ 63 (68)
.-||+|+..+|+.|+.|..+||... ...+|.|+.||++|++|+..-+
T Consensus 8 ~rER~R~~~iN~af~~LR~~lP~~~-~~~klSKi~tLr~Ai~YI~~L~ 54 (60)
T 2ql2_B 8 ARERNRMHGLNAALDNLRKVVPCYS-KTQKLSKIETLRLAKNYIWALS 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCC-SSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCC-CcCcCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999533 4589999999999999998643
No 14
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=98.73 E-value=4.3e-09 Score=63.79 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=39.8
Q ss_pred CCCchhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266 12 VTKSNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 12 ~~~~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~ 61 (68)
..+-..||+||+.+|+.|.+|+.+||-.......+.|.+||+.||.|++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~ 56 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILG 56 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHH
Confidence 34566899999999999999999999322233445799999999999976
No 15
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.71 E-value=2e-08 Score=61.07 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=40.2
Q ss_pred chhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266 15 SNPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 15 ~~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~ 61 (68)
-..||+||+.+|+.|..|+.+||... ...+..|++||..|++|++.
T Consensus 6 N~~ER~RR~~lk~~f~~Lr~~vP~~~-~~~k~sk~~iL~kA~~yI~~ 51 (80)
T 1nlw_A 6 NEMEKNRRAHLRLSLEKLKGLVPLGP-DSSRHTTLSLLTKAKLHIKK 51 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCS-SSCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999533 34788999999999999976
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.61 E-value=2.3e-08 Score=60.22 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=40.8
Q ss_pred hhHHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266 16 NPSKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS 63 (68)
Q Consensus 16 ~aeK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~ 63 (68)
+-||+|...+|+.|++|+.+||... ...||.|..|||+||+|+...+
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p-~~kKLSKiEtLr~Ai~YI~~Lq 66 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVP-RGTQLSQVEILQRVIDYILDLQ 66 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCC-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-CCCCccHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999643 4489999999999999987643
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.14 E-value=3.2e-06 Score=52.45 Aligned_cols=41 Identities=27% Similarity=0.449 Sum_probs=37.1
Q ss_pred HHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhh
Q psy8266 22 RERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTK 62 (68)
Q Consensus 22 Rdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~ 62 (68)
|+.+|+.|.+|..|+|-..+...+..|.+||+-||+|++.-
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~L 44 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKL 44 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHH
Confidence 88999999999999997666678999999999999999863
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.86 E-value=3.3e-05 Score=48.97 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=37.5
Q ss_pred HHHhHHHhHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHhhh
Q psy8266 18 SKRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRTKS 63 (68)
Q Consensus 18 eK~RRdk~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~~~ 63 (68)
+++|=..+|+-|+.|+..||... ...||.|..+||+||.|+...+
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p-~~kKLSKIETLRlAi~YI~~Lq 77 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIP-QNKKVSKMEILQHVIDYILDLQ 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSC-SSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC-CCCcccHHHHHHHHHHHHHHHH
Confidence 45555779999999999999543 4589999999999999998754
No 19
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=55.19 E-value=13 Score=20.73 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.8
Q ss_pred chhHHHhHHHhHHHHHHHHhcCC
Q psy8266 15 SNPSKRHRERLNAELDTLANLLP 37 (68)
Q Consensus 15 ~~aeK~RRdk~N~~~~~L~~lLP 37 (68)
+.+.+-+|...++.+.+|+.|.|
T Consensus 2 ~~a~~i~~~e~~~~~~~L~~MFP 24 (54)
T 1p3q_Q 2 SLIKKIEENERKDTLNTLQNMFP 24 (54)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHHHHHHHHHHcc
Confidence 45788889999999999999999
No 20
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=23.59 E-value=41 Score=16.28 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=16.7
Q ss_pred HHhHHHhHHHHHHHHhcCCC
Q psy8266 19 KRHRERLNAELDTLANLLPF 38 (68)
Q Consensus 19 K~RRdk~N~~~~~L~~lLP~ 38 (68)
|+=|.+....|..|+-.+|+
T Consensus 4 krfrkkfkklfkklspvipl 23 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPVIPL 23 (27)
T ss_dssp HHHHHHHHHHHHHHSCSCHH
T ss_pred HHHHHHHHHHHHhcCcccch
Confidence 56688899999999988884
No 21
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=22.18 E-value=1.5e+02 Score=19.35 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=32.0
Q ss_pred hHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHh
Q psy8266 25 LNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61 (68)
Q Consensus 25 ~N~~~~~L~~lLP~~~~~~~kLDKaSILrlti~yLk~ 61 (68)
++--|+.|..++|...+-..+|-|--||.-|.++...
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~ 132 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEA 132 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHH
Confidence 5667999999999888888999999999999887653
No 22
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=20.78 E-value=50 Score=15.86 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=7.9
Q ss_pred CCCchhHHHhHH
Q psy8266 12 VTKSNPSKRHRE 23 (68)
Q Consensus 12 ~~~~~aeK~RRd 23 (68)
..-+.+|++||.
T Consensus 7 srpsgaerrrrr 18 (26)
T 1g70_B 7 SRPSGAERRRRR 18 (26)
T ss_pred CCCchHHHHHHH
Confidence 344668888773
Done!