RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8266
         (68 letters)



>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 31.7 bits (72), Expect = 0.001
 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 19 KRHRERLNAELDTLANLLP--FEQNILSKLDRLSILRLSVSYLRT 61
          +R R+++N  +  L+ ++P    ++  S   +  IL  +  Y++ 
Sbjct: 14 RRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQE 58


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 31.4 bits (71), Expect = 0.001
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 19 KRHRERLNAELDTLANLLP---FEQNILSKLDRLSILRLSVSYLR 60
          +  R RL   L  LA+L+P    +QN+ +   + + +  +  Y+R
Sbjct: 11 QARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIR 55


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 30.2 bits (68), Expect = 0.004
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
          ++ R+ +     +L + +P  Q    K  R  IL  +  Y++
Sbjct: 11 RKRRDHIKDSFHSLRDSVPSLQG--EKASRAQILDKATEYIQ 50


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 28.2 bits (63), Expect = 0.022
 Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 22 RERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
          R  +N ++  L +L+       +K+ +  +LR ++ Y++
Sbjct: 1  RSSINDKIIELKDLVM---GTDAKMHKSGVLRKAIDYIK 36


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 28.3 bits (63), Expect = 0.030
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
          ++ R  L      L + +P  +N   K  ++ IL+ + +Y+ 
Sbjct: 15 RQRRNELKRSFFALRDQIPELENN-EKAPKVVILKKATAYIL 55


>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 26.8 bits (59), Expect = 0.080
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLR 60
          +R   ++N   +TL        N   +L ++ ILR ++ Y+ 
Sbjct: 21 RRRLSKVNEAFETLKRSTSSNPN--QRLPKVEILRNAIRYIE 60


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 26.8 bits (59), Expect = 0.10
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
          K  R  L   L+ L  L+P   +  S+   LS+L  +  +++ 
Sbjct: 10 KNRRAHLRLSLEKLKGLVPLGPDS-SRHTTLSLLTKAKLHIKK 51


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 25.7 bits (56), Expect = 0.24
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 19 KRHRERLNAELDTLANLLPFEQNILSKLDRLSILRLSVSYLRT 61
          KR+R  +N ++  L +L+       +KL++ ++LR ++ Y+R 
Sbjct: 15 KRYRSSINDKIIELKDLVV---GTEAKLNKSAVLRKAIDYIRF 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 221,394
Number of extensions: 7259
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 8
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)