BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8267
(645 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13367|AP3B2_HUMAN AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2
Length = 1082
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/489 (69%), Positives = 400/489 (81%), Gaps = 16/489 (3%)
Query: 9 MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
M+A+G++ASDLFPAVVKNV KNIEVKKLVYVYL RYAEEQQDLALLSISTFQR LKDPN
Sbjct: 64 MIARGKNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPN 123
Query: 69 QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEEL 128
QLIRASALRVLSSIRVP+I+PI+MLAIK+++ DMSPYVRKTAAHAIPKLYSLD +QK++L
Sbjct: 124 QLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQL 183
Query: 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188
+ VIEKLL DKTTLV GS VMAFEEVCPERID+IHK+YRKLCNLL+DV+EWGQV I++ML
Sbjct: 184 IEVIEKLLADKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIISML 243
Query: 189 TRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFY---DDETTRDTKNETSQVSTE----- 240
TRYARTQF P NE+ E+ + K FY +DE ET+ +
Sbjct: 244 TRYARTQFLSPTQNESLLEENAE-------KAFYGSEEDEAKGAGSEETAAAAAPSRKPY 296
Query: 241 -LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQT 299
+DPDHRLLL+N KPLLQSR+AAVVMAVAQL+ HLAP+ EV +IAKALVRLLRS EVQ
Sbjct: 297 VMDPDHRLLLRNTKPLLQSRSAAVVMAVAQLYFHLAPKAEVGVIAKALVRLLRSHSEVQY 356
Query: 300 VVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQT 359
VVL +A++++KRR +F PYLKSFY+RS+DPT +K LKLE+LT LA+ET+I ++LREFQT
Sbjct: 357 VVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNIPTVLREFQT 416
Query: 360 YISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQT 419
YI S+DK FVAAT+QAIG+CA NI +V DTCL GLV LLS DE VVAESVVVIK LLQ
Sbjct: 417 YIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQM 476
Query: 420 QPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDI 479
QP + +II+H+ +L+D+I VP ARA+ILWL+GEY VP + PDVLRK A +F EEDI
Sbjct: 477 QPAQHGEIIKHLAKLTDNIQVPMARASILWLIGEYCEHVPRIAPDVLRKMAKSFTAEEDI 536
Query: 480 VKLQVLNLA 488
VKLQV+NLA
Sbjct: 537 VKLQVINLA 545
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 496 TTLPPAFTSP----RYTEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGA 551
+TL P+ SP E+L+++ G L+ +FSR P P M+SV + +N
Sbjct: 844 STLVPSLLSPVSGVGRQELLHRVAGEG--LAVDYTFSRQPFSGDPHMVSVHIHFSNSSDT 901
Query: 552 PLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEG 611
P+ + + + L G+S+Q FPEI S+ PG + +G+N DSTQ + +L
Sbjct: 902 PIKGLHVGT--PKLPAGISIQEFPEIESLAPGESATAVMGINFCDSTQAANFQLCTQTR- 958
Query: 612 EDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKGN 645
+ + PVGE + V MS F E+G
Sbjct: 959 ----QFYVSIQPPVGELMAPVFMSENEFKKEQGK 988
>sp|Q7YRF1|AP3B1_CANFA AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1
Length = 1091
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/480 (68%), Positives = 401/480 (83%), Gaps = 8/480 (1%)
Query: 9 MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
M+AKG++AS+LFPAVVKNV SKNIE+KKLVYVYL RYAEEQQDLALLSISTFQRALKDPN
Sbjct: 69 MIAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPN 128
Query: 69 QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEEL 128
QLIRASALRVLSSIRVP+I+PI+MLAIK++S D+SPYVRK AAHAI KLYSLDPEQKE L
Sbjct: 129 QLIRASALRVLSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEML 188
Query: 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188
+ VIEKLL+DK+TLV GS VMAFEEVCP+RID+IHK+YRKLCNLLVDV+EWGQV I++ML
Sbjct: 189 IEVIEKLLKDKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWGQVVIIHML 248
Query: 189 TRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLL 248
TRYARTQF P E+D ED++ K FY+ + + K + + +DPDHRLL
Sbjct: 249 TRYARTQFVSP-WKEDDGLEDNE-------KNFYESDDEQKEKTDQKKKPYAMDPDHRLL 300
Query: 249 LKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASL 308
++N KPLLQSRNAAVVMAVAQL+ H++P+ EV II+K+LVRLLRS+REVQ +VL IA++
Sbjct: 301 IRNTKPLLQSRNAAVVMAVAQLYWHISPKSEVGIISKSLVRLLRSNREVQYIVLQNIATM 360
Query: 309 AVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAF 368
+++R+ + PYLKSFYVRS+DPT +K LKLE+LT LA+E +I+++LREFQTY+ S DK F
Sbjct: 361 SIQRKGMLEPYLKSFYVRSTDPTMIKILKLEILTNLANEANISTLLREFQTYVKSQDKQF 420
Query: 369 VAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDII 428
AAT+Q IG+CA +I++VTDTCL+GLV LLS DE VVAESVVVIK LLQ QP + +II
Sbjct: 421 AAATIQTIGRCATSISEVTDTCLSGLVCLLSNRDEIVVAESVVVIKKLLQMQPAQHGEII 480
Query: 429 RHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLA 488
+HM +L DSITVP ARA+ILWL+GE VP + PDVLRK A +F NE+D+VKLQ+LNL
Sbjct: 481 KHMAKLLDSITVPVARASILWLIGENCERVPKIAPDVLRKMAKSFTNEDDLVKLQILNLG 540
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 479 IVKLQVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRM 538
I L+ LNL+ ++ I+ P F P T VL GRG L+A F R PC+ +M
Sbjct: 840 IADLEGLNLS-TSSSVISVNTPVFV-PVKTHVLLHRMSGRG-LAAHYFFPRQPCIFGDKM 896
Query: 539 ISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDST 598
+S+ + L N + + I EG L GM M F I S++P ++ VS+G++ DST
Sbjct: 897 VSIQITLNNTTDRKIENIHI--EGKKLPMGMQMHVFNPIESLEPEGSITVSMGIDFCDST 954
Query: 599 QPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKG 644
Q S +L +D + + + PVGE L V MS F E+G
Sbjct: 955 QTASFQL---CTKDDCFN--VNIQPPVGELLLPVAMSEKDFKKEQG 995
>sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2
Length = 1082
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/489 (68%), Positives = 398/489 (81%), Gaps = 16/489 (3%)
Query: 9 MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
M+A+G++ASDLFPAVVKNV KNIEVKKLVYVYL RYAEEQQDLALLSISTFQR LKDPN
Sbjct: 64 MIARGKNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPN 123
Query: 69 QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEEL 128
QLIRASALRVLSSIRVP+I+PI+MLAIK+++ DMSPYVRKTAAHAIPKLYSLD +QK++L
Sbjct: 124 QLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQL 183
Query: 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188
+ VIEKLL DKTTLV GS VMAFEEVCPERID+IHK+YRKLCNLL+DV+EWGQV I++ML
Sbjct: 184 IEVIEKLLADKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIISML 243
Query: 189 TRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE-------- 240
TRYARTQF P NE+ E+ + K FY E + + +T
Sbjct: 244 TRYARTQFLSPTQNESLLEENPE-------KAFYGSEEDEAKGPGSEEAATAALPARKPY 296
Query: 241 -LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQT 299
+DPDHRLLL+N KPLLQSR+AAVVMAVAQL+ HLAP+ EV +IAKALVRLLRS EVQ
Sbjct: 297 VMDPDHRLLLRNTKPLLQSRSAAVVMAVAQLYFHLAPKAEVGVIAKALVRLLRSHSEVQY 356
Query: 300 VVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQT 359
VVL +A++++KRR +F PYLKSFY+RS+DPT +K LKLE+LT LA+ET+I ++LREFQT
Sbjct: 357 VVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNIPTVLREFQT 416
Query: 360 YISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQT 419
YI S+DK FVAAT+QAIG+CA NI +V DTCL GLV LLS DE VVAESVVVIK LLQ
Sbjct: 417 YIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQM 476
Query: 420 QPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDI 479
QP + +II+H+ +L+D+I VP ARA+ILWL+GEY VP + PDVLRK A +F EEDI
Sbjct: 477 QPAQHGEIIKHLAKLTDNIQVPMARASILWLIGEYCEHVPKIAPDVLRKMAKSFTAEEDI 536
Query: 480 VKLQVLNLA 488
VKLQV+NLA
Sbjct: 537 VKLQVINLA 545
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 496 TTLPPAFTSPRYT----EVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGA 551
++L P+ SP + E+L+++ G LS +FSR P P M+S+ + +N+
Sbjct: 844 SSLVPSLLSPVSSIGRQELLHRVAGEG--LSVDYAFSRQPFSGDPHMVSLHIYFSNNSET 901
Query: 552 PLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEG 611
P+ + + + L G+S+Q FPEI S+ PG + +G+N DSTQ + +L
Sbjct: 902 PIKGLHVGT--PKLPAGISIQEFPEIESLAPGESTTTVMGINFCDSTQAANFQLCTQTR- 958
Query: 612 EDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKGN 645
+ + PVGE + V MS F E+G
Sbjct: 959 ----QFYVSIQPPVGELMAPVFMSENEFKKEQGK 988
>sp|O00203|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3
Length = 1094
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/480 (68%), Positives = 398/480 (82%), Gaps = 8/480 (1%)
Query: 9 MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
M+AKG++AS+LFPAVVKNV SKNIE+KKLVYVYL RYAEEQQDLALLSISTFQRALKDPN
Sbjct: 69 MIAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPN 128
Query: 69 QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEEL 128
QLIRASALRVLSSIRVP+I+PI+MLAIK++S D+SPYVRK AAHAI KLYSLDPEQKE L
Sbjct: 129 QLIRASALRVLSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEML 188
Query: 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188
+ VIEKLL+DK+TLV GS VMAFEEVCP+RID+IHK+YRKLCNLLVDV+EWGQV I++ML
Sbjct: 189 IEVIEKLLKDKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWGQVVIIHML 248
Query: 189 TRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLL 248
TRYARTQF P E D ED+ K FY+ + + K + + +DPDHRLL
Sbjct: 249 TRYARTQFVSP-WKEGDELEDNG-------KNFYESDDDQKEKTDKKKKPYTMDPDHRLL 300
Query: 249 LKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASL 308
++N KPLLQSRNAAVVMAVAQL+ H++P+ E II+K+LVRLLRS+REVQ +VL IA++
Sbjct: 301 IRNTKPLLQSRNAAVVMAVAQLYWHISPKSEAGIISKSLVRLLRSNREVQYIVLQNIATM 360
Query: 309 AVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAF 368
+++R+ +F PYLKSFYVRS+DPT +KTLKLE+LT LA+E +I+++LREFQTY+ S DK F
Sbjct: 361 SIQRKGMFEPYLKSFYVRSTDPTMIKTLKLEILTNLANEANISTLLREFQTYVKSQDKQF 420
Query: 369 VAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDII 428
AAT+Q IG+CA NI +VTDTCL GLV LLS DE VVAESVVVIK LLQ QP + +II
Sbjct: 421 AAATIQTIGRCATNILEVTDTCLNGLVCLLSNRDEIVVAESVVVIKKLLQMQPAQHGEII 480
Query: 429 RHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLA 488
+HM +L DSITVP ARA+ILWL+GE VP + PDVLRK A +F +E+D+VKLQ+LNL
Sbjct: 481 KHMAKLLDSITVPVARASILWLIGENCERVPKIAPDVLRKMAKSFTSEDDLVKLQILNLG 540
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 500 PAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRID 559
PAF P T VL G+G L+A F R PC+ +M+S+ + L N + + I
Sbjct: 863 PAFV-PTKTHVLLHRMSGKG-LAAHYFFPRQPCIFGDKMVSIQITLNNTTDRKIENIHIG 920
Query: 560 SEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPL 619
+ L GM M F I S++P ++ VS+G++ DSTQ S +L +D + +
Sbjct: 921 EK--KLPIGMKMHVFNPIDSLEPEGSITVSMGIDFCDSTQTASFQL---CTKDDCFN--V 973
Query: 620 KLSAPVGEWLRAVTMSTALFDAEKG 644
+ PVGE L V MS F E+G
Sbjct: 974 NIQPPVGELLLPVAMSEKDFKKEQG 998
>sp|Q32PG1|AP3B1_BOVIN AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1
Length = 1084
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/480 (68%), Positives = 397/480 (82%), Gaps = 8/480 (1%)
Query: 9 MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
M+AKG++AS+LFPAVVKNV SKNIE+KKLVYVYL RYAEEQQDLALLSISTFQRALKDPN
Sbjct: 69 MIAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPN 128
Query: 69 QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEEL 128
QLIRASALRVLSSIRVP+I+PI+MLAIK++S D+SPYVRK AAHAI KLYSLDPEQKE L
Sbjct: 129 QLIRASALRVLSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEML 188
Query: 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188
+ +IEKLL+DK+TLV GS VMAFEEVCP+RID+IHK+YRKLCNLLVDV+EWGQV I++ML
Sbjct: 189 IEIIEKLLKDKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWGQVVIIHML 248
Query: 189 TRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLL 248
TRYARTQF P + D ED++ K FYD + + K + + +DPDHRLL
Sbjct: 249 TRYARTQFVSP-WRQGDVLEDNE-------KDFYDSDEEQKEKADKRKRPYAMDPDHRLL 300
Query: 249 LKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASL 308
++N KPLLQSRNAAVVMAVAQL+ H+AP+ E II+K+LVRLLRSSREVQ +VL IA++
Sbjct: 301 IRNTKPLLQSRNAAVVMAVAQLYWHIAPKSEAGIISKSLVRLLRSSREVQYIVLQNIATM 360
Query: 309 AVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAF 368
+++R+ +F PYLKSFYVRS+D T +K LKLE+LT LA+E +I+++LREFQTY+ S DK F
Sbjct: 361 SIQRKGMFEPYLKSFYVRSTDATMIKILKLEILTNLANEANISTLLREFQTYVKSQDKQF 420
Query: 369 VAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDII 428
AAT+Q IG+CA +I +V+DTCL GLV LLS DE VVAESVVVIK LLQ QP + +II
Sbjct: 421 AAATIQTIGRCATSITEVSDTCLNGLVCLLSNRDEIVVAESVVVIKKLLQMQPMQHGEII 480
Query: 429 RHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLA 488
+HM +L DSITVP ARA+ILWL+GE VP + PDVLRK A +F +E+D+VKLQ+LNL
Sbjct: 481 KHMAKLLDSITVPVARASILWLIGENCERVPKIAPDVLRKTAKSFTSEDDLVKLQILNLG 540
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Query: 479 IVKLQVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRM 538
I L+ LNL+ + I+ P F P T VL G+G L+A F R PC+ +M
Sbjct: 833 IADLEGLNLSATSSV-ISVSTPVFV-PGKTHVLLHRMSGKG-LAAHYFFPRQPCIFGDKM 889
Query: 539 ISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDST 598
+SV + L N + + + G L GM M F I S++P ++ VS+G++ DST
Sbjct: 890 VSVQITLNNTTDQKIENIHVG--GKKLPMGMQMHVFNPIESLEPAGSITVSMGIDFCDST 947
Query: 599 QPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKG 644
Q S +L +D S + + PVGE L V MS F E+G
Sbjct: 948 QTASFQL---CTKDDCFS--VNIQPPVGELLLPVAMSEKDFKKEQG 988
>sp|Q9Z1T1|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=2
Length = 1105
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/480 (67%), Positives = 400/480 (83%), Gaps = 7/480 (1%)
Query: 9 MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
M+AKG++AS+LFPAVVKNV SKNIE+KKLVYVYL RYAEEQQDLALLSISTFQRALKDPN
Sbjct: 69 MIAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSISTFQRALKDPN 128
Query: 69 QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEEL 128
QLIRASALRVLSSIRVP+I+P++MLAIK++S D+SPYVRK AAHAI KLYSLDPEQKE L
Sbjct: 129 QLIRASALRVLSSIRVPIIVPVMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEML 188
Query: 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188
+ VIEKLL+DK+TLV GS VMAFEEVCP+RID+IH++YRKLCNLLVDV+EWGQV I++ML
Sbjct: 189 IEVIEKLLKDKSTLVAGSVVMAFEEVCPDRIDLIHRNYRKLCNLLVDVEEWGQVVIIHML 248
Query: 189 TRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLL 248
TRYARTQF P +D L+ +K + +E + + + + S +DPDHRLL
Sbjct: 249 TRYARTQFVSP-------WREDGGLEDNEKNFYESEEEEEEKEKSSRKKSYAMDPDHRLL 301
Query: 249 LKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASL 308
++N KPLLQSRNAAVVMAVAQL+ H++P+ E +I+K+LVRLLRS+REVQ +VL IA++
Sbjct: 302 IRNTKPLLQSRNAAVVMAVAQLYWHISPKSEAGVISKSLVRLLRSNREVQYIVLQNIATM 361
Query: 309 AVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAF 368
+++R+ +F PYLKSFYVRS+DPT +KTLKLE+LT LA+E +I+++LREFQTY+ S DK F
Sbjct: 362 SIERKGMFEPYLKSFYVRSTDPTMIKTLKLEILTNLANEANISTLLREFQTYVRSQDKQF 421
Query: 369 VAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDII 428
AAT+Q IG+CA +I++VTDTCL GLV LLS DE VVAESVVVIK LLQ QP + +II
Sbjct: 422 AAATIQTIGRCATSISEVTDTCLNGLVCLLSNRDEIVVAESVVVIKKLLQMQPAQHGEII 481
Query: 429 RHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLA 488
RHM +L DSITVP ARA+ILWL+GE VP + PDVLRK A +F +E+D+VKLQ+LNLA
Sbjct: 482 RHMAKLLDSITVPVARASILWLIGENCERVPKIAPDVLRKMAKSFTSEDDLVKLQILNLA 541
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 479 IVKLQVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRM 538
I L+ LNL+ ++ I P F + E+L+++ G +G L+A F R PC+ S +M
Sbjct: 854 IADLEGLNLS-TSSSVINVSTPVFVPTKTHELLHRMHG-KG-LAAHYCFPRQPCIFSDKM 910
Query: 539 ISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDST 598
+SV + LTN + + I +G L GM M F I S++P +V VS+G++ DST
Sbjct: 911 VSVQITLTNTSDRKIENIHIGGKG--LPVGMQMHAFHPIDSLEPKGSVTVSVGIDFCDST 968
Query: 599 QPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKG 644
Q S +L +D + + L PVGE L V MS F E+G
Sbjct: 969 QTASFQL---CTKDDCFN--VTLQPPVGELLSPVAMSEKDFKKEQG 1009
>sp|Q556J8|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1
PE=3 SV=1
Length = 1108
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/538 (45%), Positives = 342/538 (63%), Gaps = 72/538 (13%)
Query: 9 MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
M++KGRD S+ FP VVKNV+ KN+E+KKLVY+YL YAE Q D ALLSI+T Q++L D +
Sbjct: 48 MLSKGRDVSEAFPQVVKNVIVKNLEIKKLVYMYLVHYAESQNDSALLSINTIQKSLNDQS 107
Query: 69 QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEEL 128
Q+IRASALRV+SSIRV II +++LAI+ S D SP+VRK AA AI K++ LD +++E L
Sbjct: 108 QVIRASALRVMSSIRVIDIIEVIILAIEKSVKDTSPFVRKAAAFAIAKVHKLDCDKQEPL 167
Query: 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188
+ ++E LL D +T+V+G+A++AF E+CP+R D++H+ YRK+C LL D DEW QV +L++L
Sbjct: 168 IDLLEILLNDTSTMVLGAAIVAFNELCPQRFDLLHQHYRKICQLLADFDEWSQVIVLDIL 227
Query: 189 TRYARTQFTDPNLNENDSSEDDDDLDGE------------------------DKKPFYDD 224
T+YAR+QF P DS+ +D ++ KKP
Sbjct: 228 TKYARSQFRCP-----DSTMNDKNIKQFKKKSKSFYSDEEDQEDDEPENSLYKKKPL--- 279
Query: 225 ETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIA 284
RD + S E+D DHRLLLK+ PLLQSRN AVVMAV+ L+ + AP E +
Sbjct: 280 --ERDMFDS----SEEIDMDHRLLLKSTLPLLQSRNNAVVMAVSSLYFYCAPSIEAQKVG 333
Query: 285 KALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTL 344
K+LVR+LRS EVQ + LT I+++ R ++F P+L F++ SSDP + LKLE+LT L
Sbjct: 334 KSLVRILRSGPEVQYITLTNISTMVTLRPSMFEPHLSEFFIHSSDPEYSIKLKLEILTRL 393
Query: 345 ASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEA 404
A+ +I IL+EF+ Y+ + DK FVAAT+QAIG CA+ + VT++C+ GL+SLLS
Sbjct: 394 ATPENIGKILKEFKEYVKNEDKKFVAATIQAIGSCASTVPDVTESCIYGLMSLLSNQSTV 453
Query: 405 VVAESVVVIKNLLQTQPE----------------------------------AYTDIIRH 430
VVAESV+V+K LLQ Y +II H
Sbjct: 454 VVAESVIVLKRLLQLNATNEKLEKLEKEKEKEKDVKENQSTISKHSSSNNSIKYDNIILH 513
Query: 431 MVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLA 488
+ +L D++ VP+ARA+I+W++GEY + VP + PDV RK +F +E + VKL+ LNL
Sbjct: 514 LSKLLDTLQVPSARASIVWVIGEYCYRVPLVAPDVFRKLVKSFSDEHESVKLETLNLG 571
>sp|O13939|AP3B_SCHPO AP-3 complex subunit beta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl6 PE=1 SV=1
Length = 745
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 264/481 (54%), Gaps = 42/481 (8%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G + S FP VVK V S+N E+++LV++YL +YAE DLALLS++T Q+ L D N
Sbjct: 61 MMHGENMSLYFPDVVKLVASENPEIRRLVHIYLLQYAEFNPDLALLSVNTVQKTLYDKNP 120
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129
L R++A+RV+SSIRVP I IV+LAI+ D + VR++AA AI K YSLDP K +L
Sbjct: 121 LTRSTAIRVMSSIRVPAINGIVLLAIQQCITDTADRVRQSAALAITKCYSLDPSYKSQLE 180
Query: 130 LVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLT 189
I+ LL D + +VV +A+ FE VCPE++++IH Y ++C L +++W +V L L
Sbjct: 181 EHIKTLLSDNSPIVVPAALFTFEVVCPEKLEIIHPYYHRICTLFPQMNDWDKVVALKTLV 240
Query: 190 RYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLL 249
RYAR +P+ S D + LL
Sbjct: 241 RYARLTLPEPSTPSTHS-------------------------------------DLKELL 263
Query: 250 KNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLA 309
++ K S + ++A A+ F++LAP ++ +I + L++LL V+T L I+ +
Sbjct: 264 ESIKSCFFSLLPSTIIAGARAFYYLAPSNQMHLIVEPLLQLLLEKPIVRTTTLRYISQIV 323
Query: 310 VKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFV 369
K LF ++KSF++ +SD LK+ +L+ L + + IL E YI+S V
Sbjct: 324 YKTPELFKNHIKSFFLIASDSDDTCLLKINILSRLLDAQNSSQILPELLYYINSHPNPSV 383
Query: 370 AAT-VQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQP-EAYTDI 427
A+T V+A+G A+ + +CL L+ LL + +V E+ ++ L+ P E Y
Sbjct: 384 ASTAVKALGDFASANISMAPSCLNTLLLLLKSHNSLIVTEAASSLRLLIHNDPKEIY--- 440
Query: 428 IRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNL 487
++++ +++ VP A++ LWL+ E+ ++P L PDVLR A TF +E VK Q+L L
Sbjct: 441 LQYLAATYETLEVPRAKSVTLWLISEHILIIPRLVPDVLRIAVKTFADETLEVKYQILEL 500
Query: 488 A 488
+
Sbjct: 501 S 501
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1
Length = 951
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 241/465 (51%), Gaps = 62/465 (13%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LFP VV + + N+E+KKLVY+YL YA+ Q D+A++++++F + +DPN
Sbjct: 41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNP 100
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129
LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ + E+
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 130 LV--IEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQV 182
+ + L+ D +VV +AV A E+ +D+ ++ KL L + EWGQ+
Sbjct: 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
FIL+ L+ Y + +DD R+ ++ +V+
Sbjct: 221 FILDCLSNY--------------NPKDD-----------------REAQSICERVT---- 245
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQL---FHHLAPRRE------VAIIAKALVRLLRS 293
P L N+AVV++ ++ F L P+ + +A LV LL
Sbjct: 246 -----------PRLSHANSAVVLSAVKVLMKFLELLPKESDYYNMLLKKLAPPLVTLLSG 294
Query: 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASI 353
EVQ V L I + KR + +K F+V+ +DP +VK KL+++ LAS+ +IA +
Sbjct: 295 EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQV 354
Query: 354 LREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413
L E + Y + VD FV V+AIG+CA + Q + C++ L+ L+ VV E++VVI
Sbjct: 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVI 414
Query: 414 KNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLV 458
+++ + P Y II + DS+ P ARAA++W++GEY+ +
Sbjct: 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459
>sp|Q9M2T1|AP3BA_ARATH AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2
SV=2
Length = 987
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 166/469 (35%), Positives = 249/469 (53%), Gaps = 67/469 (14%)
Query: 79 LSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK----EELVLVIEK 134
++ IR+ +I P+ + A+ + D + YVR+ AA+A+PKL+ L E+ EELV +
Sbjct: 1 MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGI--- 57
Query: 135 LLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRY--A 192
LL D + VVG+A AF +CP +I K+Y+KLC +L DV+EWGQ+ ++ L RY A
Sbjct: 58 LLNDHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVA 117
Query: 193 RTQFTDPNL-------NENDSSEDDD-----DLDGED--KKPFYD--------------- 223
R +L N N E D LD ED K +D
Sbjct: 118 RHGLVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGGKSDSFDVNLVSLVSKCYIQGP 177
Query: 224 DE------------TTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLF 271
DE + DTK TS E D ++LL+ PLL S N+AVV+A A +
Sbjct: 178 DEYLSRSSCTDTVSSAFDTKETTSIAHNE---DVKILLQCTSPLLWSNNSAVVLAAAGVQ 234
Query: 272 HHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPT 331
+AP +V I K L+ LLRSS + VVL I A +LF P+ ++F++ SSD
Sbjct: 235 WIMAPLEDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAY 294
Query: 332 HVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCL 391
VK KLE+L+ +A+ +SIASILREF+ YI D+ F A TV AIG CA + + TCL
Sbjct: 295 QVKAYKLEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCL 354
Query: 392 TGLVSLL---SYSDE--------AVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITV 440
GL++L+ S++ + V+ ++V+ I+ +++ P + ++ + R DSI V
Sbjct: 355 DGLLALVRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKV 414
Query: 441 PTARAAILWLLGEY---SHLVPALGPDVLRKAAITFVNEEDIVKLQVLN 486
ARA I+W++G Y H++P + + + A +F +E KLQ+LN
Sbjct: 415 AAARATIIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILN 463
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2
Length = 937
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 241/465 (51%), Gaps = 62/465 (13%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LFP VV + + N+E+KKLVY+YL YA+ Q D+A++++++F + +DPN
Sbjct: 41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNP 100
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129
LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ + E+
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 130 LV--IEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQV 182
+ + L+ D +VV +AV A E+ +D+ ++ KL L + EWGQ+
Sbjct: 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
FIL+ L+ Y + +DD R+ ++ +V+
Sbjct: 221 FILDCLSNY--------------NPKDD-----------------REAQSICERVT---- 245
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQL---FHHLAPRRE------VAIIAKALVRLLRS 293
P L N+AVV++ ++ F L P+ + +A LV LL
Sbjct: 246 -----------PRLSHANSAVVLSAVKVLMKFLELLPKESDYYNMLLKKLAPPLVTLLSG 294
Query: 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASI 353
EVQ V L I + KR + +K F+V+ +DP +VK KL+++ LAS+ +IA +
Sbjct: 295 EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQV 354
Query: 354 LREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413
L E + Y + VD FV V+AIG+CA + Q + C++ L+ L+ VV E++VVI
Sbjct: 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVI 414
Query: 414 KNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLV 458
+++ + P Y II + DS+ P ARAA++W++GEY+ +
Sbjct: 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1
Length = 937
Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 241/465 (51%), Gaps = 62/465 (13%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LFP VV + + N+E+KKLVY+YL YA+ Q D+A++++++F + +DPN
Sbjct: 41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNP 100
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129
LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ + E+
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 130 LV--IEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQV 182
+ + L+ D +VV +AV A E+ +D+ ++ KL L + EWGQ+
Sbjct: 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
FIL+ L+ Y + +DD R+ ++ +V+
Sbjct: 221 FILDCLSNY--------------NPKDD-----------------REAQSICERVT---- 245
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQL---FHHLAPRRE------VAIIAKALVRLLRS 293
P L N+AVV++ ++ F L P+ + +A LV LL
Sbjct: 246 -----------PRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSG 294
Query: 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASI 353
EVQ V L I + KR + +K F+V+ +DP +VK KL+++ LAS+ +IA +
Sbjct: 295 EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQV 354
Query: 354 LREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413
L E + Y + VD FV V+AIG+CA + Q + C++ L+ L+ VV E++VVI
Sbjct: 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVI 414
Query: 414 KNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLV 458
+++ + P Y II + DS+ P ARAA++W++GEY+ +
Sbjct: 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1
Length = 937
Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 241/465 (51%), Gaps = 62/465 (13%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LFP VV + + N+E+KKLVY+YL YA+ Q D+A++++++F + +DPN
Sbjct: 41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNP 100
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129
LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ + E+
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 130 LV--IEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQV 182
+ + L+ D +VV +AV A E+ +D+ ++ KL L + EWGQ+
Sbjct: 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
FIL+ L+ Y + +DD R+ ++ +V+
Sbjct: 221 FILDCLSNY--------------NPKDD-----------------REAQSICERVT---- 245
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQL---FHHLAPRRE------VAIIAKALVRLLRS 293
P L N+AVV++ ++ F L P+ + +A LV LL
Sbjct: 246 -----------PRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSG 294
Query: 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASI 353
EVQ V L I + KR + +K F+V+ +DP +VK KL+++ LAS+ +IA +
Sbjct: 295 EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQV 354
Query: 354 LREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413
L E + Y + VD FV V+AIG+CA + Q + C++ L+ L+ VV E++VVI
Sbjct: 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVI 414
Query: 414 KNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLV 458
+++ + P Y II + DS+ P ARAA++W++GEY+ +
Sbjct: 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1
Length = 937
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 241/465 (51%), Gaps = 62/465 (13%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LFP VV + + N+E+KKLVY+YL YA+ Q D+A++++++F + +DPN
Sbjct: 41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNP 100
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129
LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ + E+
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 130 LV--IEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQV 182
+ + L+ D +VV +AV A E+ +D+ ++ KL L + EWGQ+
Sbjct: 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
FIL+ L+ Y + +DD R+ ++ +V+
Sbjct: 221 FILDCLSNY--------------NPKDD-----------------REAQSICERVT---- 245
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQL---FHHLAPRRE------VAIIAKALVRLLRS 293
P L N+AVV++ ++ F L P+ + +A LV LL
Sbjct: 246 -----------PRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSG 294
Query: 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASI 353
EVQ V L I + KR + +K F+V+ +DP +VK KL+++ LAS+ +IA +
Sbjct: 295 EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQV 354
Query: 354 LREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413
L E + Y + VD FV V+AIG+CA + Q + C++ L+ L+ VV E++VVI
Sbjct: 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVI 414
Query: 414 KNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLV 458
+++ + P Y II + DS+ P ARAA++W++GEY+ +
Sbjct: 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2
Length = 949
Score = 229 bits (583), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 153/492 (31%), Positives = 249/492 (50%), Gaps = 63/492 (12%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LFP VV + + N+E+KKLVY+YL YA+ Q D+A+++++TF + +DPN
Sbjct: 41 MTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNP 100
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE-- 127
LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ + E+
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQLVEDQG 160
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQV 182
+ ++ L+ D +VV +AV A E+ +D+ +S KL L + EWGQ+
Sbjct: 161 FLDTLKDLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSINKLLTALNECTEWGQI 220
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
FIL+ L Y +DD R+ ++ +V+
Sbjct: 221 FILDCLANYM--------------PKDD-----------------REAQSICERVT---- 245
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAI---------IAKALVRLLRS 293
P L N+AVV++ ++ + +A LV LL +
Sbjct: 246 -----------PRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYGTLLKKLAPPLVTLLSA 294
Query: 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASI 353
E+Q V L I + KR + +K F+V+ +DP +VK KL+++ LAS+ +IA +
Sbjct: 295 EPELQYVALRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQV 354
Query: 354 LREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413
L E + Y + VD FV V+AIG+CA + Q + C++ L+ L+ VV E++VVI
Sbjct: 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVI 414
Query: 414 KNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITF 473
K++ + P Y +I + DS+ P ARAA++W++GEY+ + ++L F
Sbjct: 415 KDIFRKYPNKYESVIATLCENLDSLDEPEARAAMIWIVGEYAERIDN-ADELLESFLEGF 473
Query: 474 VNEEDIVKLQVL 485
+E V+LQ+L
Sbjct: 474 HDESTQVQLQLL 485
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2
Length = 943
Score = 229 bits (583), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 154/483 (31%), Positives = 251/483 (51%), Gaps = 45/483 (9%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LFP VV + + N+E+KKLVY+YL YA+ Q D+A+++++TF + +DPN
Sbjct: 41 MTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNP 100
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE-- 127
LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ + E+
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQLVEDQG 160
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQV 182
+ ++ L+ D +VV +AV A E+ +D+ +S KL L + EWGQ+
Sbjct: 161 FLDTLKDLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSINKLLTALNECTEWGQI 220
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
FIL+ L Y D + + + T R + ++ V + +
Sbjct: 221 FILDCLANYMPK-------------------DDREAQSICERVTPRLSHANSAVVLSAV- 260
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVL 302
++L+K + L + + A L LAP LV LL + E+Q V L
Sbjct: 261 ---KVLMKFMEMLSKDLD-----YYATLLKKLAP---------PLVTLLSAEPELQYVAL 303
Query: 303 TTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYIS 362
I + KR + +K F+V+ +DP +VK KL+++ LAS+ +IA +L E + Y +
Sbjct: 304 RNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT 363
Query: 363 SVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPE 422
VD FV V+AIG+CA + Q + C++ L+ L+ VV E++VVIK++ + P
Sbjct: 364 EVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKYPN 423
Query: 423 AYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKL 482
Y +I + DS+ P ARAA++W++GEY+ + ++L F +E V+L
Sbjct: 424 KYESVIATLCENLDSLDEPEARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQL 482
Query: 483 QVL 485
Q+L
Sbjct: 483 QLL 485
>sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3
SV=1
Length = 942
Score = 228 bits (582), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 249/490 (50%), Gaps = 61/490 (12%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LF V+ + + N+E+KKLVY+Y+ YA+ D A+L+++TFQ+ DPN
Sbjct: 41 MTVGKDVSMLFTHVLNCMQTHNLELKKLVYLYVMNYAKNHPDRAILAVNTFQKDASDPNP 100
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE--QKEE 127
LIRA A+R + IRV I + ++ + D PYVRKTAA + KLY ++PE + +
Sbjct: 101 LIRALAVRTMGCIRVDNITEHLCEPLRHALKDQDPYVRKTAAVCVAKLYDVNPELVENQG 160
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAF---EEVCPERIDMIHK-SYRKLCNLLVDVDEWGQVF 183
+ ++ LL D +VV +AV + +EV + + IH + KL L + EWGQVF
Sbjct: 161 FLNILNDLLGDSNPMVVANAVASLTEIDEVSKKEVFRIHSGNLNKLLAALNECTEWGQVF 220
Query: 184 ILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDP 243
ILN L +Y T RD++ E V
Sbjct: 221 ILNSLCKY----------------------------------TPRDSQ-EAENVC----- 240
Query: 244 DHRLLLKNAKPLLQSRNAAVVM-AVAQLFHHLAP-------RREVAIIAKALVRLLRSSR 295
+ P LQ N+AVV+ AV L ++ R +A LV LL
Sbjct: 241 ------ERVAPRLQHANSAVVLSAVKVLMKYMNSIGNNDVIRLFCKKMAPPLVTLLSKEP 294
Query: 296 EVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILR 355
E+Q + L I + KR + +K F+ + +DP +VK KLE++ LA+E +I +L
Sbjct: 295 EIQFLGLRNINLIVQKRPEILQYEMKVFFCKYNDPIYVKMEKLEIMIMLANEKNIEEVLL 354
Query: 356 EFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKN 415
EF+ Y + +D FV V+AIG+CA I + ++ C+ L+ L+ VV E+++VIK+
Sbjct: 355 EFKEYATEIDVEFVRKAVRAIGRCAIKIDRASERCIQVLLDLIQTKVNYVVQEAIIVIKD 414
Query: 416 LLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVN 475
+ + P Y II + +S+ P A+A+++W++GEY+ + ++L F +
Sbjct: 415 IFRKYPNKYEGIIATLCANLESLDEPEAKASMIWIIGEYAERIDN-AHELLNSFLEGFKD 473
Query: 476 EEDIVKLQVL 485
E V+LQ+L
Sbjct: 474 ENSQVQLQLL 483
>sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1
Length = 949
Score = 222 bits (565), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 152/483 (31%), Positives = 248/483 (51%), Gaps = 45/483 (9%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LFP VV + + N+E+KKLVY+YL YA+ Q D+A+++++TF + +DPN
Sbjct: 41 MTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNP 100
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE-- 127
LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ + E+
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQLVEDQG 160
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQV 182
+ ++ L+ D +VV + V A E+ +D+ +S KL L + EW Q+
Sbjct: 161 FLDTLKDLISDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSINKLLTALNECTEWAQI 220
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
FIL+ L Y D + + + T R + ++ V + +
Sbjct: 221 FILDCLGNYMPK-------------------DDREAQSICERVTPRLSHANSAVVLSAV- 260
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVL 302
++L+K + L + + A L LAP LV LL + E Q V L
Sbjct: 261 ---KVLMKFMEMLSKDLDY-----YATLLKKLAP---------PLVTLLSAEPEPQYVPL 303
Query: 303 TTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYIS 362
I + KR + +K F+V+ +DP +VK KL+++ LAS+ +IA +L E + Y +
Sbjct: 304 RNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT 363
Query: 363 SVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPE 422
VD FV V+AIG+CA + Q + C++ L+ L+ VV E++VVIK++ + P
Sbjct: 364 EVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKYPN 423
Query: 423 AYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKL 482
Y +I + DS+ P ARAA++W++GEY+ + ++L F +E V+L
Sbjct: 424 KYESVIATLCENLDSLDEPEARAAMIWIVGEYAERIDN-ADELLESFLDGFHDESTQVQL 482
Query: 483 QVL 485
Q+L
Sbjct: 483 QLL 485
>sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD
PE=1 SV=2
Length = 893
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 156/490 (31%), Positives = 246/490 (50%), Gaps = 61/490 (12%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LF VV + ++N+E+KKLVY+YL YA+ Q DLA+L+++TF + +DPN
Sbjct: 43 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE-- 127
LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ E E+
Sbjct: 103 LIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRG 162
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHK----SYRKLCNLLVDVDEWGQVF 183
+ ++ L+ D +VV +AV A E+ I + KL L + EWGQVF
Sbjct: 163 FLEALKDLISDNNPMVVANAVAALAEIQENSTSPIFEINSTILTKLLTALNECTEWGQVF 222
Query: 184 ILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDP 243
IL+ L+RY + +DP EN
Sbjct: 223 ILDALSRY---KASDPREAEN--------------------------------------- 240
Query: 244 DHRLLLKNAKPLLQSRNAAVVM-AVAQLFHHL-------APRREVAIIAKALVRLLRSSR 295
+++ P LQ N AVV+ AV + + R +A LV LL +
Sbjct: 241 ----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVIRNLCKKMAPPLVTLLSAEP 296
Query: 296 EVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILR 355
E+Q V L I + KR + +K F+ + +DP +VK KLE++ LAS+ +I +L
Sbjct: 297 EIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLL 356
Query: 356 EFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKN 415
EF+ Y + VD FV V+AIG+CA + + + C++ L+ L+ VV E+++VIK+
Sbjct: 357 EFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKD 416
Query: 416 LLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVN 475
+ + P Y II + D++ P A+A+++W++GEY+ + ++L F
Sbjct: 417 IFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLENFPE 475
Query: 476 EEDIVKLQVL 485
E V+LQ+L
Sbjct: 476 EPAQVQLQLL 485
>sp|Q9SUS3|APBLB_ARATH Beta-adaptin-like protein B OS=Arabidopsis thaliana GN=BETAB-AD
PE=1 SV=1
Length = 894
Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 155/490 (31%), Positives = 246/490 (50%), Gaps = 61/490 (12%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LF VV + ++N+E+KKLVY+YL YA+ Q DLA+L+++TF + +DPN
Sbjct: 43 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE-- 127
LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ E E+
Sbjct: 103 LIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRG 162
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHK----SYRKLCNLLVDVDEWGQVF 183
+ ++ L+ D +VV +AV A E+ I + + KL L + EWGQVF
Sbjct: 163 FLEALKDLISDNNPMVVANAVAALAEIQENSSSPIFEINSTTLTKLLTALNECTEWGQVF 222
Query: 184 ILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDP 243
IL+ L++Y + DP EN
Sbjct: 223 ILDALSKY---KAADPREAEN--------------------------------------- 240
Query: 244 DHRLLLKNAKPLLQSRNAAVVM-AVAQLFHHL-------APRREVAIIAKALVRLLRSSR 295
+++ P LQ N AVV+ AV + + R +A LV LL +
Sbjct: 241 ----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVIRNLCKKMAPPLVTLLSAEP 296
Query: 296 EVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILR 355
E+Q V L I + KR + +K F+ + +DP +VK KLE++ LAS+ +I +L
Sbjct: 297 EIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLL 356
Query: 356 EFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKN 415
EF+ Y + VD FV V+AIG+CA + + + C++ L+ L+ VV E+++VIK+
Sbjct: 357 EFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKD 416
Query: 416 LLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVN 475
+ + P Y II + D++ P A+A+++W++GEY+ + ++L F
Sbjct: 417 IFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLENFPE 475
Query: 476 EEDIVKLQVL 485
E V+LQ+L
Sbjct: 476 EPAQVQLQLL 485
>sp|P46682|AP3B_YEAST AP-3 complex subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL6 PE=1 SV=2
Length = 809
Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 147/500 (29%), Positives = 263/500 (52%), Gaps = 36/500 (7%)
Query: 9 MMAKGRDASDL---FPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALK 65
+MA D+ D+ F VVKN+ + + +VK+L+++YL R+AE +L LLSI++ Q++L
Sbjct: 69 IMASDDDSIDVQLYFADVVKNITTNDTKVKRLIHLYLLRFAENDPNLTLLSINSLQKSLS 128
Query: 66 DPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP-EQ 124
D N +R AL LS +++ + PI++ +K D S VR A AI KLY +
Sbjct: 129 DSNSELRCFALSALSDMKMSSLAPIILHTVKKLVTDPSAMVRGEVALAIIKLYRAGKNDY 188
Query: 125 KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFI 184
EEL+ ++++L+ D V+ AV+A++E + ++++H +R+ C ++ +D W Q ++
Sbjct: 189 HEELLDILKELMADTDPKVISCAVLAYKECYADHLELLHGHFRRYCRIIKQLDSWSQSYL 248
Query: 185 LNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKK-PFYDDETTRDTKNETSQVSTEL-- 241
+ +L +Y + P + + S +G + P D NE S E+
Sbjct: 249 IELLIKYCKQYLPKPTVVDKSS-------EGSPRSCPL------PDKYNEIEYPSYEVVN 295
Query: 242 DPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP--RREVAIIAKALVR--LLRSSREV 297
DPD L L++ L+ S N V+++ + LA + + +ALVR + ++
Sbjct: 296 DPDLDLFLQSLNCLIYSSNPTVILSCCNALYQLASPLQMKNTKFIEALVRTVTMTENQGN 355
Query: 298 QTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREF 357
+ ++L I L++ + LF+PY K FYV DP K+++L+TL +E+++ I +E
Sbjct: 356 KEMLLQAIHFLSILDQTLFLPYTKKFYVFPKDPIVASIWKIQILSTLINESNVKEIFKEL 415
Query: 358 QTYISSVD--KAFVAATVQAIGKCAANIAQVTDTCLTGLVSLL-SYSDEAVVAESVV-VI 413
+ Y++S + V V+++ +C + L+ + S++ A V ++ V VI
Sbjct: 416 KYYVASAHFPENVVIMAVKSLSRCGQLSTSWESHVMKWLIDHMESHNLSASVLDAYVNVI 475
Query: 414 KNLLQTQPEAYTDIIRHMVRLSDSITVPT-----ARAAILWLLGEYSHLVPALGPDVLRK 468
+ L+Q P T +R + +L+D +TV T ARA I+WL GE + + + PDVLR+
Sbjct: 476 RMLVQKNP---TKHLRIIFKLADLLTVQTSLADNARAGIVWLFGEIASIEFKICPDVLRR 532
Query: 469 AAITFVNEEDIVKLQVLNLA 488
F NE + Q+L L+
Sbjct: 533 LIQNFSNEGPETRCQILVLS 552
>sp|Q759E2|AP3B_ASHGO AP-3 complex subunit beta OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL6 PE=3 SV=2
Length = 781
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 154/509 (30%), Positives = 270/509 (53%), Gaps = 56/509 (11%)
Query: 9 MMAKGRDASDL---FPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALK 65
+M G + +L F +VKN+ S +++V+++V VYL RYAE +LALLSI++ QR+L
Sbjct: 69 LMGSGDSSIELETHFADIVKNIGSDDVKVRRMVSVYLLRYAETNPNLALLSINSIQRSLS 128
Query: 66 DPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ- 124
D N +RA AL+ LS I + + PI++ ++K + +D S VR A + KL+ EQ
Sbjct: 129 DSNPDVRALALKTLSDINIASLYPIILHSLKKTVIDSSEVVRCQVAMTLLKLFK---EQG 185
Query: 125 ---KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQ 181
K++++ +++ LL D VV +A++ F++ + + ++H YR+ C++L + E Q
Sbjct: 186 ISIKDDVMPMLKSLLADSEPSVVSAALLLFQKAFAQELQLLHGHYRRYCSILNQLTENAQ 245
Query: 182 VFILNMLTRYARTQFTDPNLNENDSSEDDDDL-DGEDKKPF--YDDETTRDTKNETSQVS 238
++++ YA+ P + + S + L D ++ PF YD
Sbjct: 246 AIMIDIFIAYAKEYLPRPMVRDTSSDAEAIQLPDSFNQIPFPVYD--------------- 290
Query: 239 TELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREV--AIIAKALVRLLRSS-- 294
E D D L L + K LL S NA V++AV++ F+ L+ + + I +L+RL SS
Sbjct: 291 VEYDHDLNLFLSSLKKLLHSPNAMVIVAVSKAFYQLSSPKTFKDSGIVDSLLRLTVSSYI 350
Query: 295 -REVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASI 353
E++ +VL +I +LF + K F++ SD ++ KL++L+ L S+++ I
Sbjct: 351 CSEIKELVLQSILVYCCSDPSLFRSHYKRFFLMPSDTENISIFKLKILSILVSDSNCKHI 410
Query: 354 LREFQTYISSVDKAFVAATVQA----------IGKCAANIAQVTDTCLTGLVSLLSYS-- 401
+ E + FVA T Q+ + CA ++ + ++ L+ +S +
Sbjct: 411 VNELK---------FVAGTEQSASILVEVSNTLSVCAQISSKWSSQIISWLLDRISSNTP 461
Query: 402 -DEAVVAESVVVIKNLLQTQPEAYTDIIRHMVR-LSDSITVPTARAAILWLLGEYSHLVP 459
D+ V A + V+++L+Q P + + + + LS+ +P+A+A I+WLLGEY + P
Sbjct: 462 IDKEVTASQINVLRSLIQKDPIKHIATVVKLSKMLSNHDLLPSAKAPIIWLLGEYVQVEP 521
Query: 460 ALGPDVLRKAAITFVNEEDIVKLQVLNLA 488
+ PDVLR+ F E V+LQ+LNLA
Sbjct: 522 RICPDVLRRLLPQFSKEHAHVRLQILNLA 550
>sp|O43079|AP1B1_SCHPO AP-1 complex subunit beta-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=apl2 PE=1 SV=1
Length = 683
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/464 (27%), Positives = 230/464 (49%), Gaps = 60/464 (12%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LFP V+KN+ +++I +KKLVY+YL YA+ DL +L+++TF + ++ N
Sbjct: 45 MTVGKDVSSLFPDVLKNLATRDITLKKLVYLYLINYAKTHPDLCILAVNTFVKDSEEYNP 104
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ--KEE 127
+RA A+R + IRV II + ++ + D PYVRK AA + K+Y LD E
Sbjct: 105 TLRALAIRTMGCIRVNKIIGYLADPLRKALKDEHPYVRKAAAVCVVKMYDLDREYCASNG 164
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVC---PER--IDMIHKSYRKLCNLLVDVDEWGQV 182
+ ++ L+ D +VV +AV + E+ PE+ ++++ +L L + +EWG++
Sbjct: 165 FIEQLQALVSDPNPVVVANAVRSLAEIHDQDPEKGYFNVVYTMTDRLMVALSECNEWGRI 224
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
ILN L R+ T D K
Sbjct: 225 TILNSLARF----------------------------------RTSDIK----------- 239
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQ-------LFHHLAPRREVAIIAKALVRLLRSSR 295
+ + + P Q N+ VV++ + LF +A L+ LL +
Sbjct: 240 -EAEYVCERVVPQFQHANSGVVLSAVKVIMVHIPLFSSDFTDFLYKKMAPPLLTLLSTDS 298
Query: 296 EVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILR 355
E+Q V L I + KR ++F + F+ + +DP ++K KL+++T LA + +I +
Sbjct: 299 EIQYVALRNINLILQKRPSIFDVKTRVFFCKYNDPLYIKMEKLKIITMLACDENINETIS 358
Query: 356 EFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKN 415
E + Y+S V+ FV T++ +G A + V + C++ + + + +V E VV++
Sbjct: 359 ELRAYVSEVELEFVKQTIKCLGDVALKVPSVINDCISIFLEIYELNISYMVQEVTVVMET 418
Query: 416 LLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVP 459
+L+ P+ ++ ++ R+ + + P AR+++ W+LGE+SH++P
Sbjct: 419 VLRKYPQKIDLLLPYLSRVIEELGDPRARSSMAWILGEFSHVIP 462
>sp|O43005|AP2B_SCHPO AP-2 complex subunit beta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl1 PE=3 SV=1
Length = 677
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 215/462 (46%), Gaps = 61/462 (13%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
++ G D S LFP+V+ ++ S N+E+KKL Y+YL YA + A ++ + N
Sbjct: 42 ISYGYDMSSLFPSVISSMESNNLELKKLCYLYLKIYASVKPTEAKRAVKLILNDIYSSNP 101
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129
+IR+ ALR L+S+ + M I D PYVRKTAA I KLYS D + E
Sbjct: 102 MIRSLALRTLTSVNIKNFWVAAMDPIVRLLDDTDPYVRKTAAIGIAKLYSYDKKMVESSG 161
Query: 130 LV--IEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLV----DVDEWGQVF 183
L+ ++++L D++++VV +++ A + R++ N LV D EW QV
Sbjct: 162 LIDHLKEMLSDESSVVVANSLAALMNIVNSSTGFKLTFSREISNKLVKSLTDCSEWLQVA 221
Query: 184 ILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDP 243
IL+ L FY + + ++ ++S
Sbjct: 222 ILDALI-------------------------------FYVPQKPGEAESFAERIS----- 245
Query: 244 DHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLA-----PRREVAIIAKA---LVRLL-RSS 294
P LQ NAAV M ++ +L R K LV LL R S
Sbjct: 246 ----------PWLQHGNAAVCMGAVKVILYLTNYMKDDNRVKEYFMKTQPPLVTLLARKS 295
Query: 295 REVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASIL 354
Q V+L I + + +F + FY DP +VK KL++LT +A ++ IL
Sbjct: 296 SATQYVILRNIQIILEQCPEMFANDIHFFYCNFDDPIYVKLEKLDILTKIADIHNLDQIL 355
Query: 355 REFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIK 414
EF Y S +D V +V+ IG A I + + C+ L+ L++ V+ E+V+VI+
Sbjct: 356 PEFVEYASEIDVELVRKSVKCIGYLAIKIEERKNDCIDSLIELMNTKVTYVIQEAVIVIR 415
Query: 415 NLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSH 456
++L+ P +Y ++ + DS+ P A++A++W+LG+Y+
Sbjct: 416 DILRKYPGSYKSLVPILYENLDSLDEPDAKSAVIWILGQYAE 457
>sp|Q9LDK9|APBLA_ARATH Beta-adaptin-like protein A OS=Arabidopsis thaliana GN=BETAA-AD
PE=1 SV=1
Length = 841
Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/470 (27%), Positives = 218/470 (46%), Gaps = 70/470 (14%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G D S +F +V + +I +KK+ Y+Y+ YA+ DL+LL+I+ QR KD +
Sbjct: 55 MTIGIDVSSVFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPDLSLLTINFLQRDCKDEDP 114
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ--KEE 127
+IR ALR L S+RVP ++ ++ + D + YVR A + KLY + P +
Sbjct: 115 MIRGLALRSLCSLRVPNLVEYLVGPLGSGLKDNNSYVRTIAVTGVLKLYHISPSTCIDAD 174
Query: 128 LVLVIEKL-LQDKTTLVVGSAVMAF-----------EEVCPERIDMIHKSY-RKLCNLLV 174
++ L L D VV + + A EE C E+ ++ K N +
Sbjct: 175 FPATLKSLMLHDSDAQVVANCLSALQEIWSLEASHSEEACREKESLLSKPVIYYFLNRIK 234
Query: 175 DVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNET 234
+ +EW Q IL + +Y S+ +D D
Sbjct: 235 EFNEWAQCLILELAVKYV-------------PSDSNDIFD-------------------- 261
Query: 235 SQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLA------PRREVAIIAKALV 288
++ + LQ N AVV+A ++F L ++ I L+
Sbjct: 262 -------------IMNLLEDRLQHANGAVVLATVKVFLQLTLSMTDVHQQVYERIKSPLL 308
Query: 289 RLLRS-SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASE 347
L+ S S E +L+ + L V+ +F K FY + ++P++VK LKLE+LT +A+E
Sbjct: 309 TLVSSGSPEQSYAILSHLHLLVVRAPFIFAADYKHFYCQYNEPSYVKKLKLEMLTAVANE 368
Query: 348 TSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVA 407
++ I+ E Y ++VD A +++A+GK A V + + L+ L + V A
Sbjct: 369 SNTYEIVTELCEYAANVDIAIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTA 427
Query: 408 ESVVVIKNLLQTQPEAYTDIIRHMVRLSD-SITVPTARAAILWLLGEYSH 456
E++V++K+LL+ P+ D I + +S +I P A+AA++W+LGEY+
Sbjct: 428 ETLVLVKDLLRKYPQWSHDCISVVGGISSKNIQEPKAKAALIWMLGEYAQ 477
>sp|Q9Y6B7|AP4B1_HUMAN AP-4 complex subunit beta-1 OS=Homo sapiens GN=AP4B1 PE=1 SV=2
Length = 739
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/454 (25%), Positives = 204/454 (44%), Gaps = 46/454 (10%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M +G D S +F +VK + +I KKLVY+Y+ YA + DLALL+I+T + DPN
Sbjct: 40 MTQGLDMSGVFMEMVKASATVDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNP 99
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL--DPEQKEE 127
++R ALR + S+R+P + + I + D + YVR+ A K+++L D E
Sbjct: 100 MVRGLALRSMCSLRMPGVQEYIQQPILNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGA 159
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKS--YRKLCNLLVDVDEWGQVFIL 185
LV + LL+D+ +VV + + + EE+ + ++ L N + +D+WGQ +L
Sbjct: 160 LVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVL 219
Query: 186 NMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDH 245
N L RY SE++ +D D+
Sbjct: 220 NFLLRY------------QPRSEEE----------LFDILNLLDS--------------- 242
Query: 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTI 305
LK++ P + + + +A++F H+ V + L SRE+ V L +
Sbjct: 243 --FLKSSSPGVVMGATKLFLILAKMFPHVQTDVLVRVKGPLLAACSSESRELCFVALCHV 300
Query: 306 ASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVD 365
+ F + K F+ S+P ++K K+E+L L ++ ++ +L E + Y + V
Sbjct: 301 RQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVS 360
Query: 366 KAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYT 425
F A + AIG A TD C+ L LL E + V ++L+ P+
Sbjct: 361 ADFAQAAIFAIGGIART---YTDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTE 417
Query: 426 DIIRHMVRLSDSITVPTARAAILWLLGEYSHLVP 459
+ + + ++I + A++WLLG + +P
Sbjct: 418 AVCQALPGCEENIQDSEGKQALIWLLGVHGERIP 451
>sp|Q9WV76|AP4B1_MOUSE AP-4 complex subunit beta-1 OS=Mus musculus GN=Ap4b1 PE=2 SV=2
Length = 738
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/461 (26%), Positives = 206/461 (44%), Gaps = 60/461 (13%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M +G D SD+F +VK + +I KKLVY+Y+ YA + DLALL+I+T + DPN
Sbjct: 40 MTQGLDMSDVFMEMVKASATVDIVQKKLVYLYMGTYAPLKPDLALLAINTLCKDCSDPNP 99
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL--DPEQKEE 127
++R ALR + S+R+P + + + + D + YVR+ A K+++L D E
Sbjct: 100 MVRGLALRSMCSLRMPGVQEYIQQPVVNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGA 159
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKS--YRKLCNLLVDVDEWGQVFIL 185
LV + LL+D+ +VV + + + EE+ + ++ L N + +D+WGQ +L
Sbjct: 160 LVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVL 219
Query: 186 NMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDH 245
N L RY SE++ +D
Sbjct: 220 NFLLRY------------QPRSEEE----------LFD---------------------- 235
Query: 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLA---PRREVAIIAKALVRLLRS----SREVQ 298
+L L+S + VVM +LF LA P + ++ + LL + SRE+
Sbjct: 236 --ILNLLDSYLKSSSTGVVMGATKLFLILAKKFPHVQTDVLVRVKGPLLAACSSESRELC 293
Query: 299 TVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQ 358
L + + F + K F+ S+P ++K K+E+L L ++ ++ +L E +
Sbjct: 294 FAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELR 353
Query: 359 TYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQ 418
Y + V F A + AIG A TD C+ L LL E + V ++L+
Sbjct: 354 GYCTDVAADFAQAAIFAIGSIAKT---YTDQCVQILTELLGLRQEHITTVVVQTFRDLVW 410
Query: 419 TQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVP 459
P+ + + + ++I + A++WLLG + +P
Sbjct: 411 LCPQCTEAVCQALPGCEENIQDSEGKQALIWLLGVHGEKIP 451
>sp|P36000|AP1B1_YEAST AP-1 complex subunit beta-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APL2 PE=1 SV=1
Length = 726
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 133/507 (26%), Positives = 226/507 (44%), Gaps = 84/507 (16%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M G+D S LFP V+KN+ + ++E KKLVY+Y+ YAE +L +L+++TF +DPN
Sbjct: 54 MTLGKDVSSLFPDVLKNIATIDVEQKKLVYLYVMNYAETHPELCILAVNTFITDAQDPNP 113
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129
LIR A+R +S IRV I+ + ++ + D + YVRKTA + KL+ L+ + EL
Sbjct: 114 LIRCMAIRTMSMIRVDKILEYIETPLRRTLHDDNAYVRKTAVICVAKLFQLNKDLCVELG 173
Query: 130 LVIEKL---LQDKTTLVVGSAVMAFEEVCPERID------MIHKSYRKLCNLLVDVDEWG 180
V+E L L D LV+ +A A E+ +D +I + L + EW
Sbjct: 174 -VVEDLVNALDDSNPLVIANATAALIEIHNMDMDAVDLSSLIQSHVSQFLLALNECTEWA 232
Query: 181 QVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240
++ IL L+ Y+ D L+ +D
Sbjct: 233 RIIILGTLSEYSAK----------------DSLEAQD----------------------- 253
Query: 241 LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAI-------IAKALVRLLRS 293
++ LQ N AVV+A ++ P+ E + ++ A V L+ +
Sbjct: 254 -------IIDRVTAHLQHVNPAVVLATIKVIVRNLPQIEYSSNSLIMKRLSSAFVSLMST 306
Query: 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIAS- 352
E+Q V L I + K L L+ FYV+ +DP +VK K+++L L +++
Sbjct: 307 PPEMQYVALKNIRIILEKYPELLTKELRIFYVKFNDPLYVKLEKIDILVRLVDPSNLKQC 366
Query: 353 --ILREFQTYISSVDKAFVAATVQAIGKCAANIAQ--VTDTCLTGLVSLLSYSDEAVVAE 408
+L E + Y + FV+ +QA+ + AQ L L+ LL D + +
Sbjct: 367 TLLLTELKEYAMEYEPEFVSRAIQALSQLGIKYAQESFVSKVLDILLELLERQD-TIKDD 425
Query: 409 SVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVP-------TARAAILWLLGEYSHLVPAL 461
+ + +LL+ P + + + + ++ + P A+ +WLLG++ P
Sbjct: 426 CCISLCDLLRHCP-GNDKMAKQVCAVFNTWSNPEVLLQSDIAKCNYVWLLGQH----PNN 480
Query: 462 GPDVLRKAAI---TFVNEEDIVKLQVL 485
D+ K I FV EE + ++ +L
Sbjct: 481 FSDLESKINIFIENFVQEEALTQMSLL 507
>sp|Q54R84|AP4B_DICDI AP-4 complex subunit beta OS=Dictyostelium discoideum GN=ap4b1 PE=3
SV=1
Length = 838
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 125/490 (25%), Positives = 207/490 (42%), Gaps = 94/490 (19%)
Query: 8 YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP 67
Y M G D S LFP V+ S +I +KKLVY+Y+ Y++ DL LL ++T +R D
Sbjct: 52 YYMTIGMDVSVLFPDVIMVASSNDIIIKKLVYLYIVHYSKSNPDLLLLVVNTLRRDCIDR 111
Query: 68 NQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE 127
N +IR ALR L S+ + + I S D S YVRKTA + KLY L E +
Sbjct: 112 NPIIRGLALRSLCSLDSKNTLEYATIEINRSLTDFSGYVRKTALLGLAKLYHLSKEAFDL 171
Query: 128 LVLV--IEKLLQDKTTLVVGSAVMAFEEVCPE---RIDMIHKSYRKLCNLLVDVDEWGQV 182
+++ I ++ D+ V+ +AV E+ P D++ K + +EW Q
Sbjct: 172 DIIIPKIFDMIMDQDPQVIVNAVSTLNEIKPGWSFTFDLVQHLMIK----FKEFNEWSQC 227
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
IL L+RY S +D+ LD
Sbjct: 228 IILECLSRYT-------------PSSEDESLD---------------------------- 246
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRRE------VAIIAKALVRLLRSSRE 296
+L L N+A+ ++ ++F E I + L+ L+ SS
Sbjct: 247 -----ILNLLDDRLSHSNSALTLSTIKIFLKYTDEFEEIQEQVYERIKEPLITLMESSES 301
Query: 297 VQT--VVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASET----SI 350
+T +L I L + LF Y K FY + DP ++KTLK+++L +AS SI
Sbjct: 302 NETSFTILHHIHLLMSRSPRLFNRYYKHFYCKFDDPLYIKTLKVQVLKEIASNQTFIESI 361
Query: 351 ASILREFQTYISSVDKAFVAATVQAIGKCAANIAQ------VTDTCLTGL-VSLLSYS-- 401
IL+E Y+ D + ++ AI A + ++ L + + LS S
Sbjct: 362 DEILQELSEYVYEGDHSLCKQSINAITVIAQKHKNTQEKYPIDESVLEKIFLPYLSVSSN 421
Query: 402 -----------DEAVVAESVVVIKNLLQTQPEAYTDIIRHMVR-------LSDSITVPTA 443
+E +++ ++ +K+ L+ P+ ++ ++ +S+ P+A
Sbjct: 422 LGGAGDDNISINEGILSFILISLKDFLRVFPKHLKTVLPYINENLIGIGSVSNYTLPPSA 481
Query: 444 RAAILWLLGE 453
++LW+LGE
Sbjct: 482 NESVLWMLGE 491
>sp|P27351|AP2B_YEAST AP-2 complex subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL1 PE=1 SV=2
Length = 700
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 134/265 (50%), Gaps = 15/265 (5%)
Query: 237 VSTELDPDHRL----LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREV------AIIAKA 286
++T + P H L +++ A P LQ N VV+ + +L +V ++ +
Sbjct: 235 LTTSVVPQHYLDTHEMIELALPYLQQVNTYVVLNSLKFIMYLLNYVDVIKETLAEKLSNS 294
Query: 287 LVRLLRSSREVQTVVL-TTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLA 345
++ LL E+Q +VL I L + +L + F++ +DP ++K KLE L LA
Sbjct: 295 VIALLDKPPELQFLVLRNVILLLLSRESSLLRLDISYFFIEYNDPIYIKDTKLECLYLLA 354
Query: 346 SETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQ--VTDTCLTGLVSLLSYSDE 403
++ ++ IL E + Y + +D +V+AIG A + + V D C+ L+ LL + +
Sbjct: 355 NKETLPRILEELEQYATDIDIQMSRKSVRAIGNLAVKLDEDSVHD-CVAVLLDLLEFGVD 413
Query: 404 AVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGP 463
VV E + V +N+L+ P + + +V+ ++ + P ++ A++W++ +YS ++P
Sbjct: 414 YVVQEIISVFRNILRKYPNNFKANVTELVKHTEVVQEPESKNAMIWIITQYSDVIPNYL- 472
Query: 464 DVLRKAAITFVNEEDIVKLQVLNLA 488
++ R + +E V+ +LN A
Sbjct: 473 ELFRVFSSNMFSETLEVQFSILNSA 497
>sp|P22892|AP1G1_MOUSE AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3
Length = 822
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 115/481 (23%), Positives = 190/481 (39%), Gaps = 78/481 (16%)
Query: 8 YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP 67
YM G A +K + S+ K++ Y+ +E+QD+ LL + + L
Sbjct: 55 YMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHS 114
Query: 68 NQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAA----HAIPKLYSLDPE 123
Q ++ AL L + + + ++ + Y+RK AA H I K+ PE
Sbjct: 115 TQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV----PE 170
Query: 124 QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDV------- 176
E + + LL +K V+ ++V+ E+C DM+ +RKL LV +
Sbjct: 171 LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML-AHFRKLVPQLVRILKNLIMS 229
Query: 177 ------------DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDD 224
D + QV IL +L R N++DSSE +D+ + +
Sbjct: 230 GYSPEHDVSGISDPFLQVRILRLLRILGR--------NDDDSSEAMNDILAQVAT---NT 278
Query: 225 ETTRDTKNET--SQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAI 282
ET+++ N V T +D ++S + V+A+ L L + I
Sbjct: 279 ETSKNVGNAILYETVLTIMD-------------IKSESGLRVLAINILGRFLL-NNDKNI 324
Query: 283 IAKALVRLLRSSREVQTVVLTTIASLAVKR-RALFVPYLKSFYVRSSDPTHVKTLKLELL 341
AL LL++ VQT AV+R R+ V LK V +K +EL
Sbjct: 325 RYVALTSLLKT---VQT------DHNAVQRHRSTIVDCLKDLDV------SIKRRAMELS 369
Query: 342 TTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVT----DTCLTGLVSL 397
L + +I +++E ++ S + F A I A A DT + L +
Sbjct: 370 FALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA 429
Query: 398 LSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHL 457
SY + V + +I N ++ AYT + L D P + A W +GEY L
Sbjct: 430 GSYVRDDAVPNLIQLITNSVEMH--AYTVQRLYKAILGDYSQQPLVQVAA-WCIGEYGDL 486
Query: 458 V 458
+
Sbjct: 487 L 487
>sp|O43747|AP1G1_HUMAN AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5
Length = 822
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 115/481 (23%), Positives = 190/481 (39%), Gaps = 78/481 (16%)
Query: 8 YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP 67
YM G A +K + S+ K++ Y+ +E+QD+ LL + + L
Sbjct: 55 YMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHS 114
Query: 68 NQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAA----HAIPKLYSLDPE 123
Q ++ AL L + + + ++ + Y+RK AA H I K+ PE
Sbjct: 115 TQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV----PE 170
Query: 124 QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDV------- 176
E + + LL +K V+ ++V+ E+C DM+ +RKL LV +
Sbjct: 171 LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML-AHFRKLVPQLVRILKNLIMS 229
Query: 177 ------------DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDD 224
D + QV IL +L R N++DSSE +D+ + +
Sbjct: 230 GYSPEHDVSGISDPFLQVRILRLLRILGR--------NDDDSSEAMNDILAQVAT---NT 278
Query: 225 ETTRDTKNET--SQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAI 282
ET+++ N V T +D ++S + V+A+ L L + I
Sbjct: 279 ETSKNVGNAILYETVLTIMD-------------IKSESGLRVLAINILGRFLL-NNDKNI 324
Query: 283 IAKALVRLLRSSREVQTVVLTTIASLAVKR-RALFVPYLKSFYVRSSDPTHVKTLKLELL 341
AL LL++ VQT AV+R R+ V LK V +K +EL
Sbjct: 325 RYVALTSLLKT---VQT------DHNAVQRHRSTIVDCLKDLDV------SIKRRAMELS 369
Query: 342 TTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVT----DTCLTGLVSL 397
L + +I +++E ++ S + F A I A A DT + L +
Sbjct: 370 FALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA 429
Query: 398 LSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHL 457
SY + V + +I N ++ AYT + L D P + A W +GEY L
Sbjct: 430 GSYVRDDAVPNLIQLITNSVEMH--AYTVQRLYKAILGDYSQQPLVQVAA-WCIGEYGDL 486
Query: 458 V 458
+
Sbjct: 487 L 487
>sp|Q54HL0|COPG_DICDI Coatomer subunit gamma OS=Dictyostelium discoideum GN=copG PE=1
SV=1
Length = 898
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 8 YMMAKG-----RDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQR 62
Y++++G +A+D+F A K SK+I +++L+Y+ L + QD A++ IS+ +
Sbjct: 51 YLLSRGDSFTKTEATDIFFAATKLFQSKDIPLRRLMYLLLKELSTISQD-AIIVISSLTK 109
Query: 63 ALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP 122
+ +L RA+A+R+L I I+P + K S ++ P+V A + L + P
Sbjct: 110 DMSHKIELYRANAIRILCKITDSSILPQIERYFKQSIVEKDPHVSSAALVSSIHLLKVCP 169
Query: 123 EQKEELVLVIEKLLQDKTTLV 143
E + +++ + +K+ +V
Sbjct: 170 EIVKRWANEVQEAISNKSNMV 190
>sp|Q8L7A9|AP4E_ARATH AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730
PE=1 SV=1
Length = 938
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 4/169 (2%)
Query: 8 YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP 67
Y+ G DAS + VK N+ +K+ Y+ + + E DL +L ++T Q+ L+
Sbjct: 75 YIEMLGHDASFGYIYAVKMTHDDNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLRSD 134
Query: 68 NQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE 127
N L+ +AL + + IP V+ + + VRK A A+ + + P
Sbjct: 135 NYLVVCAALNAICRLINEETIPAVLPQVVELLNHQKEAVRKKAIMALHRFHRKSPSSVSH 194
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDV 176
LV K L D V+G+ + ++ E ++ SY+ L + V +
Sbjct: 195 LVSNFRKRLCDNDPGVMGATLCPLFDLISEDVN----SYKDLVSSFVSI 239
>sp|O88512|AP1G2_MOUSE AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=2
SV=2
Length = 791
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 107/467 (22%), Positives = 187/467 (40%), Gaps = 82/467 (17%)
Query: 24 VKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIR 83
+K + S K++ Y+ +E+ D LL ++ + L NQ ++ AL LS++
Sbjct: 72 LKLIASPRFTDKRVGYLGAMLLLDERHDSHLLITNSIKNDLSQGNQPVQGLALCTLSTMG 131
Query: 84 VPMIIPIVMLAIKDSSLDMSPYVRK----TAAHAIPKLYSLDPEQKEELVLVIEKLLQDK 139
+ + ++ L SPYVRK TA H I K DPE + KLL+++
Sbjct: 132 SAEMCRDLAPEVEKLLLQPSPYVRKKAILTAVHMIRK----DPELSGIFLPPCTKLLRER 187
Query: 140 TTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDV-------------------DEWG 180
+ V E+C ER + +RK+ LV + D +
Sbjct: 188 HHGIQLGTVTLITELC-ERNPAALRHFRKVVPQLVQILRTLVTTGYSTEHSISGVSDPFL 246
Query: 181 QVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240
QV IL +L R N +SSE +DL +QV+T
Sbjct: 247 QVQILRLLRILGR--------NHEESSETMNDL--------------------LAQVATN 278
Query: 241 LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVR-LLRSSREVQT 299
D +NA + +MA+ H A R +A+ L R LL + + ++
Sbjct: 279 TDTS-----RNAGNAVLLETVLTIMAI----HSAAGLRVLAV--NILGRFLLNNDKNIRY 327
Query: 300 VVLTTIASL------AVKR-RALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIAS 352
V LT++ L AV+R R+ V L+ +D + + LEL L + +++ +
Sbjct: 328 VALTSLLQLVQSDHSAVQRHRSTVVECLQ-----ETDAS-LSRRALELSLALVNSSNVRA 381
Query: 353 ILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVV 412
+++E Q ++ S A I A A + ++ +L+ + V ++V
Sbjct: 382 MMQELQAFLESCPPDLRADCASGILLAAERFAPSKRWHIDTILHVLTTAGAHVRDDAVAN 441
Query: 413 IKNLLQTQPEAYTDIIRHMVR-LSDSITVPTARAAILWLLGEYSHLV 458
+ L+ E +T +R + L++ I+ W +GEY L+
Sbjct: 442 LTQLIGEAEELHTYSVRRLYSALAEDISQQPLVQVAAWCIGEYGDLL 488
>sp|Q9UUF7|COPB_SCHPO Coatomer subunit beta OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sec26 PE=3 SV=1
Length = 940
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 63/114 (55%), Gaps = 12/114 (10%)
Query: 18 DLFPAVVKNVV-----SKNIEVKKLVYVYLA---RYAEE---QQDLALLSISTFQRALKD 66
D P+++ +V+ S+N E+KKL+Y Y +Y + +Q++ +L+ ++F+ L+
Sbjct: 47 DSLPSILMHVIRFVMPSRNKELKKLLYYYWEVCPKYNNDGTMKQEM-ILACNSFRNDLQH 105
Query: 67 PNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL 120
PN+ IR + LR L ++ P ++ ++ ++ YVRK A A+ +Y +
Sbjct: 106 PNEFIRGATLRFLCKLKEPELLDPLIPTVRQCLEHRHAYVRKNAILAVFSIYQV 159
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 300 VVLTTIASLAVKRRALF-------VPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIAS 352
++L I+ LA + +++ +P+L SS V + ++ L S ++
Sbjct: 296 IMLDRISQLAARDKSILEDLITDVIPFL------SSSDFDVCEKAISIIMGLVSSRNVED 349
Query: 353 ILREFQTYISSV------DKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVV 406
IL FQ ++ D A +AI CA N T + L+S +S
Sbjct: 350 ILNHFQKELTKSNGETEKDDGRRRALTKAIHSCAINFPHTAATAIQYLLSHISDFQSKSA 409
Query: 407 AESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEY 454
+ + IK +++ P+ + I ++ + ++W+ GEY
Sbjct: 410 SSVLSFIKEVMEKFPDLRSSNITKLLLSLKELRAGKIFRGVIWIAGEY 457
>sp|O75843|AP1G2_HUMAN AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1
SV=1
Length = 785
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 102/468 (21%), Positives = 187/468 (39%), Gaps = 80/468 (17%)
Query: 24 VKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIR 83
+K + S K++ Y+ +E+ D LL ++ + L Q ++ AL LS++
Sbjct: 72 LKLIASSRFTDKRVGYLGAMLLLDERHDAHLLITNSIKNDLSQGIQPVQGLALCTLSTMG 131
Query: 84 VPMIIPIVMLAIKDSSLDMSPYVRK----TAAHAIPKLYSLDPEQKEELVLVIEKLLQDK 139
+ + ++ L SPYVRK TA H I K+ PE + +LL ++
Sbjct: 132 SAEMCRDLAPEVEKLLLQPSPYVRKKAILTAVHMIRKV----PELSSVFLPPCAQLLHER 187
Query: 140 TTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDV-------------------DEWG 180
++ + E+C ER + +RK+ LV + D +
Sbjct: 188 HHGILLGTITLITELC-ERSPAALRHFRKVVPQLVHILRTLVTMGYSTEHSISGVSDPFL 246
Query: 181 QVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240
QV IL +L R N +SSE +DL + + +T+R+ N
Sbjct: 247 QVQILRLLRILGR--------NHEESSETMNDLLAQVAT---NTDTSRNAGNA------- 288
Query: 241 LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTV 300
+L + ++ R+AA + +A V I+ + LL S R ++ V
Sbjct: 289 ------VLFETVLTIMDIRSAAGLRVLA-----------VNILGRF---LLNSDRNIRYV 328
Query: 301 VLTTIASL------AVKR-RALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASI 353
LT++ L AV+R R V L R +D + + LEL L + +++ ++
Sbjct: 329 ALTSLLRLVQSDHSAVQRHRPTVVECL-----RETDAS-LSRRALELSLALVNSSNVRAM 382
Query: 354 LREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413
++E Q ++ S A I A A + ++ +L+ + V ++V +
Sbjct: 383 MQELQAFLESCPPDLRADCASGILLAAERFAPTKRWHIDTILHVLTTAGTHVRDDAVANL 442
Query: 414 KNLLQTQPEAYTDIIRHMVR-LSDSITVPTARAAILWLLGEYSHLVPA 460
L+ E + +R + L++ I+ W +GEY L+ A
Sbjct: 443 TQLIGGAQELHAYSVRRLYNALAEDISQQPLVQVAAWCIGEYGDLLLA 490
>sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1
PE=1 SV=1
Length = 895
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 106/469 (22%), Positives = 193/469 (41%), Gaps = 82/469 (17%)
Query: 24 VKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIR 83
+K +VS + K++ Y+ L +E+Q++ LL+ + + + + NQ I +L +I
Sbjct: 69 LKLIVSPSYADKRIGYLGLMLLLDEKQEVLLLATNCIRGDIMNSNQFIVGVSLCAFGNIC 128
Query: 84 VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLV 143
+ + I+ +PY+RK AA ++ P+ E + I+ LL ++ V
Sbjct: 129 STAMARDISPEIEKVISHSNPYIRKKAALCAIRVLRKVPDLTENYIPKIKALLSERNHAV 188
Query: 144 VGSAVMAFEEVCP-ERIDMIHKSYRKLCNLLVDV-------------------DEWGQVF 183
+ +A+ E+C + +IH ++K+ LV + D + QV
Sbjct: 189 ILTALTLIIEICEMDSTQIIH--FKKMVPQLVRILKSLTSSGYLPEHDIGGVTDPFLQVK 246
Query: 184 ILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDP 243
IL +L + N+ ++S+ +D+ +QVST D
Sbjct: 247 ILRLLRILGQ--------NDPEASDAMNDI--------------------LAQVSTNTDS 278
Query: 244 ----DHRLLLKNAKPLL--QSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREV 297
+ +L + + ++ +S N VMA+ L L R+ I AL L R
Sbjct: 279 TKNVGNAILYECVQTIMTIESENGLKVMAINILGRFLL-NRDNNIRYVALNTLSR----- 332
Query: 298 QTVVLTTIASLAVKRRALFVPYLKSFYVRSSDP-THVKTLKLELLTTLASETSIASILRE 356
VV T I ++ + R V LK DP ++ L+L+ +L +E++I ++RE
Sbjct: 333 --VVNTDIQAVQ-RHRNTIVECLK-------DPDVSIRCRALDLIYSLVTESNIRVLVRE 382
Query: 357 FQTYISSVDKAF----VAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVV 412
++ D F VA K A N DT L ++S + + E
Sbjct: 383 LLNFLLIADAQFKSELVAKLCIVTEKYAPNKRWQIDTIL----RVMSIAGNFIPDEVPSN 438
Query: 413 IKNLLQTQPEAYTDIIRHM-VRLSDSITVPTARAAILWLLGEYSHLVPA 460
+ L+ + PE + ++ + + L IT LW +GEY L+ A
Sbjct: 439 LIQLISSTPELSSYAVQKLYLALKQDITQQPLTQVGLWCIGEYGDLLVA 487
>sp|Q9U4N3|COPB_TOXGO Coatomer subunit beta OS=Toxoplasma gondii PE=2 SV=2
Length = 1103
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 10 MAKGRDASDLFPAVVKNVV-SKNIEVKKLVYVYLARYAEEQQDLAL-----LSISTFQRA 63
M +G + L V++ + SK+ VKKL +YL + + D +L L + +
Sbjct: 47 MTQGEAYTRLLMTVIRYAMPSKDKRVKKLTQLYLEIVGKCRPDGSLKEEMILICNALRND 106
Query: 64 LKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTA---AHAIPKLYSL 120
L PN+ +R S LR+LS IR ++ ++ AI + YVR+ A ++I K + L
Sbjct: 107 LMSPNEYVRGSTLRLLSKIRQFKVLEPLVEAILQNLTHRHSYVRRNAVMCVYSIVKNFGL 166
Query: 121 DP-----EQKEELVL 130
D +Q E+++L
Sbjct: 167 DAIPATIDQIEQMLL 181
>sp|Q53PC7|COPB1_ORYSJ Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica
GN=Os11g0174000 PE=2 SV=1
Length = 953
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 373 VQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMV 432
VQAI CA +V + + L+ L ++ A + V+ ++ +++T P+ +I+ ++
Sbjct: 381 VQAIHSCAVEYPEVAGSVVHLLMDFLGDTNVAAAVDVVLFVREIIETNPKLRVSMIQRLI 440
Query: 433 RLSDSITVPTARAAILWLLGEYS 455
I + LW+LGEYS
Sbjct: 441 DTFYQIRASRVCSCALWILGEYS 463
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 9 MMAKGRDASDLFPAVVKNVV-SKNIEVKKLVYVYLARYAEEQQDLA--------LLSIST 59
++ G LF VV+ V+ S++ ++KL+ +YL +++D+A +L
Sbjct: 44 LLLNGETLPHLFITVVRYVLPSEDHTIQKLLLLYLE--IVDKRDVASGKVLPEMILICQN 101
Query: 60 FQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS 119
+ L+ PN+ IR LR L + P ++ ++ +I + ++R+ A AI +Y
Sbjct: 102 LRNNLQHPNEYIRGVTLRFLCRLNEPELLEPLIPSILANLDHRHHFIRRHALSAISAIYR 161
Query: 120 L 120
L
Sbjct: 162 L 162
>sp|P41810|COPB_YEAST Coatomer subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC26 PE=1 SV=2
Length = 973
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 20/132 (15%)
Query: 10 MAKGRDASDLFPAVVKNVV-SKNIEVKKLVYVY------LARYAEEQQDLALLSISTFQR 62
M +G +L +++ V+ SKN E+KKL+Y Y LA + + ++ L+ + Q
Sbjct: 51 MLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVPKLAEDGKLRHEMILVC-NAIQH 109
Query: 63 ALKDPNQLIRASALRVLSSIR----VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLY 118
L+ PN+ IR + LR L+ +R + ++P V+ ++ YVRK A A+ ++
Sbjct: 110 DLQHPNEYIRGNTLRFLTKLREAELLEQMVPSVLACLEYR----HAYVRKYAILAVFSIF 165
Query: 119 SLD----PEQKE 126
+ P+ KE
Sbjct: 166 KVSEHLLPDAKE 177
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 336 LKLELLTTLASETSIASILREFQTYISSVDK----AFVAATVQAIGKCAANIAQVTDTCL 391
+ ++L T+ +E + + +E QT +++ D+ + ++ I A N ++ + +
Sbjct: 344 ISMDLATSRNAEDVVQLLKKELQTTVNNPDQDKAMQYRQLLIKTIRTVAVNFVEMAASVV 403
Query: 392 TGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLL 451
+ L+ + + + + IK +++ P+ +I+ +MV+ D + A LW++
Sbjct: 404 SLLLDFIGDLNSVAASGIIAFIKEVIEKYPQLRANILENMVQTLDKVRSAKAYRGALWIM 463
Query: 452 GEYS 455
GEY+
Sbjct: 464 GEYA 467
>sp|Q0JNK5|COPB2_ORYSJ Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica
GN=Os01g0281400 PE=3 SV=1
Length = 950
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 373 VQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMV 432
VQAI CA +V + + L+ L ++ A + V+ ++ +++T P+ +I+ ++
Sbjct: 380 VQAIHACAVEYPEVAGSVVHLLMDFLGDTNVAAAVDVVLFVREIIETNPKLRVSMIQRLI 439
Query: 433 RLSDSITVPTARAAILWLLGEYS 455
I + LW+LGEYS
Sbjct: 440 DTFYQIRASRVCSCALWILGEYS 462
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 9 MMAKGRDASDLFPAVVKNVV-SKNIEVKKLVYVYLARYAEEQQDLA-------LLSISTF 60
++ G LF VV+ V+ S++ ++KL+ +YL +++D A +L
Sbjct: 44 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEII--DKRDAAGRGLPEMILICQNL 101
Query: 61 QRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL 120
+ L PN+ IR LR L + P ++ ++ +I ++ ++R+ A AI +Y L
Sbjct: 102 RNNLHHPNEYIRGVTLRFLCRLSEPEVLEPLVPSILENLDHRHHFIRRHALSAISSIYRL 161
>sp|P54169|YPGR_BACSU Uncharacterized protein YpgR OS=Bacillus subtilis (strain 168)
GN=ypgR PE=4 SV=1
Length = 377
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 41 YLARYAE-EQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSS 99
+ RYA EQ D I Q+AL DP IR A+ L I P ++P++ A++D +
Sbjct: 220 WKKRYAHLEQMDPKEEDIPVLQKALDDPKVSIRRQAVVYLGMIETPDVLPLLYKALEDKA 279
Query: 100 LDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157
+ VR+TA + + DP + + + K L D + LV A M EV E
Sbjct: 280 VS----VRRTAGDCLSDIG--DP----QAIPAMIKSLSDSSKLVRWRAAMFLYEVGDE 327
>sp|P45437|COPB_DROME Coatomer subunit beta OS=Drosophila melanogaster GN=betaCop PE=2
SV=2
Length = 964
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 20 FPAVVKNVVS-----KNIEVKKLVYVYLARYAEEQQDLALLS-----ISTFQRALKDPNQ 69
+P ++ ++ +N +KKL+ ++ + D LL +++ L+ PN+
Sbjct: 53 YPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVCDAYRKDLQHPNE 112
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLY 118
+R S LR L ++ P ++ +M AI+ YVR+ A AI +Y
Sbjct: 113 FLRGSTLRFLCKLKEPELLEPLMPAIRACLDHRHSYVRRNAVLAIFTIY 161
Score = 39.7 bits (91), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 373 VQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMV 432
V+ + C+ V + LV LS ++E A+ ++ I+ +Q P II H++
Sbjct: 381 VRTLHTCSIKFPDVAANVIPVLVEFLSDTNELAAADVLIFIREAIQKFPALRALIIEHLI 440
Query: 433 RLSDSITVPTARAAILWLLGEY 454
I A +W+LGEY
Sbjct: 441 EAFPQIKSSKIHRAAVWILGEY 462
>sp|Q9SV20|COPB2_ARATH Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2
SV=2
Length = 948
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 373 VQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMV 432
+QAI CA +V T + L+ L S+ A + VV ++ +++T P+ II ++
Sbjct: 379 IQAIHACAVKFPEVASTVVHLLMDFLGDSNVASALDVVVFVREIIETNPKLRVSIITRLL 438
Query: 433 RLSDSITVPTARAAILWLLGEY 454
I LW++GEY
Sbjct: 439 DTFYQIRAGKVCPCALWIIGEY 460
>sp|Q9SV21|COPB1_ARATH Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1
SV=2
Length = 948
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 373 VQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMV 432
+QAI CA +V T + L+ L S+ A + VV ++ +++T P+ II ++
Sbjct: 379 IQAIHACAVKFPEVASTVVHLLMDFLGDSNVASALDVVVFVREIIETNPKLRVSIITRLL 438
Query: 433 RLSDSITVPTARAAILWLLGEY 454
I LW++GEY
Sbjct: 439 DTFYQIRAGKVCPCALWIIGEY 460
>sp|Q29G21|COPB_DROPS Coatomer subunit beta OS=Drosophila pseudoobscura pseudoobscura
GN=betaCop PE=3 SV=2
Length = 965
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 373 VQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMV 432
V+ + C+ V T + LV LS ++E A+ ++ I+ +Q P II H++
Sbjct: 380 VRTLHTCSIKFPDVAATVIPVLVEFLSDTNELAAADVLIFIREAIQKFPALSGLIIEHLI 439
Query: 433 RLSDSITVPTARAAILWLLGEYSHLVPALGPDVL 466
I A +W+LGEY GP ++
Sbjct: 440 EAFPQIKSSKIHRAAVWILGEYVE-----GPQII 468
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 34 VKKLVYVYLARYAEEQQDLALLS-----ISTFQRALKDPNQLIRASALRVLSSIRVPMII 88
+KKL+ ++ + D LL +++ L+ PN+ +R S LR L ++ P ++
Sbjct: 71 IKKLLLIFWEIVPKTSGDGKLLQEMILVCDAYRKDLQHPNEFLRGSTLRFLCKLKEPELL 130
Query: 89 PIVMLAIKDSSLDMSPYVRKTAAHAIPKLY 118
+M AI+ YVR+ A AI +Y
Sbjct: 131 EPLMPAIRACLDHRHSYVRRNAVLAIFTIY 160
>sp|O94679|CND1_SCHPO Condensin complex subunit 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cnd1 PE=1 SV=1
Length = 1158
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 18/137 (13%)
Query: 36 KLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI------------- 82
K V ++L R + +L L ++ + L + +R + + VL+++
Sbjct: 288 KQVALFLVRLSSLIPNLCLKQLTQLVKLLDSESYTLRCAIIEVLANVVIDQIHDEAQNEM 347
Query: 83 --RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD---PEQKEELVLVIEKLLQ 137
VP + +M + + LD+SPY R H K++ L P +++E+ ++ + LQ
Sbjct: 348 SESVPATVQSLMDLLSERLLDISPYCRTKVLHVFIKIFDLPIKYPRKRQEIAELVIRCLQ 407
Query: 138 DKTTLVVGSAVMAFEEV 154
D+++ V +A+ F ++
Sbjct: 408 DRSSHVRRNAIKLFSKL 424
>sp|Q23924|COPB_DICDI Coatomer subunit beta OS=Dictyostelium discoideum GN=copb PE=2 SV=2
Length = 912
Score = 40.8 bits (94), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 85/191 (44%), Gaps = 28/191 (14%)
Query: 19 LFPAVVKNVVSKNIEVKKLVYVY--------LARYAEEQQDLALLSISTFQRALKDPNQL 70
L P ++ + S + +KKL+ +Y L + E +L ++ L PN+
Sbjct: 64 LMPIILYVMPSNDHTIKKLLLIYWEVIEKTHLGKLKSEM----ILVCNSLLNDLNHPNEF 119
Query: 71 IRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS----LDPEQKE 126
+R S LR L +R ++ ++ +++ + + Y R+ A AI +YS L P+ E
Sbjct: 120 VRGSTLRFLCKLREAEVLEPLVPSVRSNLENRHAYCRRNAVLAIYNIYSHFDYLIPDAPE 179
Query: 127 ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWG---QVF 183
L+ LLQ+K +A + PE K+ L ++L +V +G Q
Sbjct: 180 ---LIYNFLLQEKDASCKRNAFIMLFNCAPE------KAVEYLSSVLDEVPSFGDMLQFI 230
Query: 184 ILNMLTRYART 194
++ ++ + +T
Sbjct: 231 VVELIRKVCKT 241
>sp|Q80V94|AP4E1_MOUSE AP-4 complex subunit epsilon-1 OS=Mus musculus GN=Ap4e1 PE=2 SV=3
Length = 1122
Score = 39.3 bits (90), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 1 MAKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTF 60
M + C M+ G DAS + +K N+ K++ Y+ ++ + E +L LL ++T
Sbjct: 80 MVRLIYCEML--GYDASFGYIHAIKLAQQGNLLEKRVGYLAVSLFLHESHELLLLLVNTV 137
Query: 61 QRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL 120
+ L+ N + AL V+S I +IP V+ I+D +R+ A A+ K Y +
Sbjct: 138 VKDLQSTNLVEVCMALTVVSQIFPREMIPAVLPLIEDKLQHSKEIIRRKAVLALYKFYLI 197
Query: 121 DPEQKEELVLVIEKLLQDKTTLVVGSAVMAF 151
P Q + + K L D+ V+ +++ +
Sbjct: 198 APNQVQHIHTKFRKALCDRDVGVMAASLHIY 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,084,376
Number of Sequences: 539616
Number of extensions: 8530597
Number of successful extensions: 35008
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 34504
Number of HSP's gapped (non-prelim): 435
length of query: 645
length of database: 191,569,459
effective HSP length: 124
effective length of query: 521
effective length of database: 124,657,075
effective search space: 64946336075
effective search space used: 64946336075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)