Query psy8267
Match_columns 645
No_of_seqs 292 out of 1316
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 22:58:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1060|consensus 100.0 7E-124 2E-128 1010.5 51.6 611 2-645 55-896 (968)
2 PTZ00429 beta-adaptin; Provisi 100.0 5.6E-88 1.2E-92 769.7 48.7 483 2-534 52-599 (746)
3 KOG1077|consensus 100.0 3.7E-85 8.1E-90 701.2 37.5 597 4-643 60-840 (938)
4 KOG1061|consensus 100.0 2.8E-76 6E-81 647.3 31.0 484 2-533 33-578 (734)
5 PF01602 Adaptin_N: Adaptin N 100.0 3.3E-72 7.3E-77 633.0 34.0 450 2-495 26-485 (526)
6 KOG1062|consensus 100.0 8.9E-70 1.9E-74 593.3 33.3 447 3-489 55-540 (866)
7 COG5096 Vesicle coat complex, 100.0 4E-57 8.7E-62 505.6 37.7 440 2-490 39-516 (757)
8 KOG1059|consensus 100.0 5.7E-51 1.2E-55 440.0 33.6 440 2-490 56-524 (877)
9 KOG1058|consensus 100.0 7.2E-48 1.6E-52 417.2 37.0 406 2-459 40-466 (948)
10 KOG1078|consensus 100.0 3E-31 6.5E-36 290.6 40.8 437 2-491 43-493 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 5.4E-29 1.2E-33 263.9 33.5 451 2-489 44-512 (898)
12 PF14796 AP3B1_C: Clathrin-ada 99.8 3.1E-19 6.7E-24 164.0 7.4 94 502-599 47-145 (145)
13 PF01602 Adaptin_N: Adaptin N 99.5 2.8E-12 6.1E-17 145.1 29.4 381 17-444 113-512 (526)
14 PRK13800 putative oxidoreducta 99.2 7.1E-09 1.5E-13 124.6 26.9 272 56-413 622-894 (897)
15 PTZ00429 beta-adaptin; Provisi 99.1 6.5E-08 1.4E-12 112.4 32.8 417 21-493 35-471 (746)
16 PRK09687 putative lyase; Provi 99.1 9.2E-09 2E-13 107.1 22.6 252 55-413 23-277 (280)
17 PRK13800 putative oxidoreducta 99.0 1.7E-07 3.6E-12 112.9 28.8 285 70-451 609-894 (897)
18 KOG1058|consensus 98.9 6.6E-08 1.4E-12 107.6 20.1 321 91-475 100-444 (948)
19 PRK09687 putative lyase; Provi 98.9 3.8E-07 8.2E-12 95.0 24.7 249 23-342 28-278 (280)
20 PF12717 Cnd1: non-SMC mitotic 98.8 6.9E-08 1.5E-12 93.9 12.1 125 68-192 1-138 (178)
21 PLN03200 cellulose synthase-in 98.7 0.00011 2.5E-09 92.4 40.7 406 18-459 144-641 (2102)
22 PF10508 Proteasom_PSMB: Prote 98.6 1.6E-05 3.6E-10 89.7 27.7 323 17-378 76-462 (503)
23 KOG1059|consensus 98.6 4E-05 8.8E-10 85.6 28.2 276 85-436 104-381 (877)
24 PLN03200 cellulose synthase-in 98.5 6.6E-05 1.4E-09 94.4 30.4 377 64-489 413-856 (2102)
25 KOG2023|consensus 98.4 8.6E-06 1.9E-10 90.1 17.5 321 73-459 376-735 (885)
26 PF10508 Proteasom_PSMB: Prote 98.4 0.00076 1.6E-08 76.3 33.6 381 25-489 45-461 (503)
27 KOG2171|consensus 98.4 0.0023 5E-08 75.6 37.2 431 19-489 5-500 (1075)
28 KOG0212|consensus 98.4 0.00029 6.3E-09 77.1 26.9 355 23-419 5-407 (675)
29 KOG2171|consensus 98.3 0.00097 2.1E-08 78.7 32.0 378 49-488 116-544 (1075)
30 KOG2023|consensus 98.3 8.8E-05 1.9E-09 82.4 21.8 385 23-489 18-501 (885)
31 KOG1060|consensus 98.3 0.0012 2.6E-08 74.9 29.9 379 3-434 87-549 (968)
32 KOG1062|consensus 98.1 0.00046 1E-08 78.4 22.6 147 96-291 76-228 (866)
33 PF13646 HEAT_2: HEAT repeats; 98.0 2.8E-05 6E-10 65.9 8.8 84 58-151 2-87 (88)
34 KOG0166|consensus 98.0 0.0014 3.1E-08 72.5 23.6 284 93-418 112-436 (514)
35 KOG0212|consensus 98.0 0.02 4.3E-07 63.3 31.5 401 10-456 72-530 (675)
36 PF12717 Cnd1: non-SMC mitotic 97.9 0.00022 4.7E-09 69.4 13.6 144 294-437 1-157 (178)
37 KOG1241|consensus 97.9 0.011 2.3E-07 67.4 28.2 192 280-489 496-707 (859)
38 KOG1242|consensus 97.8 0.021 4.6E-07 63.9 28.4 397 9-488 125-559 (569)
39 smart00809 Alpha_adaptinC2 Ada 97.8 9E-05 1.9E-09 65.2 8.1 81 521-609 7-89 (104)
40 COG1413 FOG: HEAT repeat [Ener 97.7 0.0045 9.8E-08 66.1 21.6 96 55-159 43-138 (335)
41 COG5240 SEC21 Vesicle coat com 97.7 0.013 2.9E-07 64.5 24.7 332 67-451 202-550 (898)
42 KOG1020|consensus 97.7 0.048 1E-06 66.4 30.3 436 31-488 793-1290(1692)
43 KOG1078|consensus 97.7 0.056 1.2E-06 61.9 29.3 360 29-438 146-515 (865)
44 PF02883 Alpha_adaptinC2: Adap 97.6 0.00021 4.5E-09 64.2 7.7 92 521-622 11-109 (115)
45 PF05804 KAP: Kinesin-associat 97.6 0.016 3.5E-07 67.4 24.2 341 64-456 259-652 (708)
46 COG5215 KAP95 Karyopherin (imp 97.6 0.11 2.3E-06 57.7 28.6 81 40-120 350-438 (858)
47 KOG1824|consensus 97.5 0.099 2.2E-06 61.0 29.4 327 20-399 773-1151(1233)
48 KOG1241|consensus 97.5 0.037 8E-07 63.1 25.6 403 18-459 319-814 (859)
49 KOG2259|consensus 97.4 0.041 8.9E-07 61.9 23.7 342 52-434 118-527 (823)
50 KOG0213|consensus 97.4 0.074 1.6E-06 60.5 25.0 255 12-310 667-954 (1172)
51 TIGR02270 conserved hypothetic 97.4 0.035 7.6E-07 61.0 22.6 261 63-417 33-295 (410)
52 KOG1061|consensus 97.3 0.039 8.5E-07 63.2 22.6 138 19-156 122-268 (734)
53 KOG0213|consensus 97.3 0.078 1.7E-06 60.3 24.1 100 55-154 476-583 (1172)
54 KOG0166|consensus 97.3 0.0055 1.2E-07 68.0 15.1 190 4-193 216-436 (514)
55 TIGR02270 conserved hypothetic 97.3 0.02 4.3E-07 62.9 19.4 116 56-188 87-202 (410)
56 cd00020 ARM Armadillo/beta-cat 97.2 0.0021 4.5E-08 56.9 9.6 101 91-191 8-118 (120)
57 KOG0414|consensus 97.2 0.0019 4.2E-08 76.3 10.5 139 16-157 917-1065(1251)
58 cd00020 ARM Armadillo/beta-cat 97.2 0.0012 2.6E-08 58.4 7.1 100 56-155 8-119 (120)
59 COG1413 FOG: HEAT repeat [Ener 97.1 0.057 1.2E-06 57.6 20.9 110 19-143 44-153 (335)
60 cd00256 VATPase_H VATPase_H, r 97.1 0.15 3.2E-06 56.2 24.1 277 166-489 103-421 (429)
61 KOG0414|consensus 97.1 0.35 7.5E-06 58.0 27.6 149 7-155 259-427 (1251)
62 PF13646 HEAT_2: HEAT repeats; 97.0 0.0035 7.6E-08 52.8 8.6 85 21-115 2-88 (88)
63 PF12348 CLASP_N: CLASP N term 97.0 0.0089 1.9E-07 60.1 12.4 153 2-154 27-204 (228)
64 KOG4224|consensus 97.0 0.042 9.1E-07 57.9 16.9 322 25-417 92-445 (550)
65 KOG1077|consensus 96.9 1 2.3E-05 51.4 27.9 336 35-421 60-436 (938)
66 PF04826 Arm_2: Armadillo-like 96.9 0.078 1.7E-06 54.5 18.1 219 95-373 17-254 (254)
67 COG5098 Chromosome condensatio 96.8 0.0071 1.5E-07 67.9 10.3 175 17-192 891-1075(1128)
68 PF04826 Arm_2: Armadillo-like 96.7 0.051 1.1E-06 55.8 15.6 128 66-193 24-163 (254)
69 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.0061 1.3E-07 53.1 7.3 65 84-148 21-89 (97)
70 COG5215 KAP95 Karyopherin (imp 96.5 0.99 2.1E-05 50.4 23.8 186 283-489 499-707 (858)
71 PF05918 API5: Apoptosis inhib 96.4 0.53 1.1E-05 53.4 21.8 120 69-192 36-161 (556)
72 PF13513 HEAT_EZ: HEAT-like re 96.2 0.01 2.2E-07 45.6 5.4 50 104-153 1-54 (55)
73 COG5096 Vesicle coat complex, 96.2 3.9 8.4E-05 48.1 32.1 130 59-191 22-155 (757)
74 KOG2259|consensus 96.2 2.9 6.3E-05 47.7 25.7 314 53-387 156-517 (823)
75 COG5098 Chromosome condensatio 96.1 0.059 1.3E-06 60.8 12.5 127 30-156 274-415 (1128)
76 PF13513 HEAT_EZ: HEAT-like re 96.1 0.014 2.9E-07 44.9 5.6 49 69-117 1-55 (55)
77 PF02985 HEAT: HEAT repeat; I 96.1 0.0087 1.9E-07 40.5 3.8 29 91-119 1-29 (31)
78 KOG1824|consensus 96.1 1.9 4.2E-05 50.9 24.5 202 283-489 819-1032(1233)
79 KOG1240|consensus 95.6 0.5 1.1E-05 56.8 17.7 131 55-188 462-641 (1431)
80 smart00638 LPD_N Lipoprotein N 95.5 0.26 5.5E-06 56.9 15.0 100 56-159 447-548 (574)
81 PF12348 CLASP_N: CLASP N term 95.2 0.52 1.1E-05 47.2 14.6 161 327-489 17-202 (228)
82 KOG1240|consensus 94.6 7.3 0.00016 47.4 23.2 117 283-433 579-699 (1431)
83 COG5181 HSH155 U2 snRNP splice 94.6 4.6 0.0001 45.8 20.3 100 56-155 282-389 (975)
84 KOG0567|consensus 94.5 0.18 3.9E-06 51.2 8.9 87 56-152 188-276 (289)
85 PF08713 DNA_alkylation: DNA a 94.5 0.39 8.4E-06 47.6 11.4 136 19-161 52-189 (213)
86 PF10363 DUF2435: Protein of u 94.1 0.25 5.4E-06 42.6 7.6 65 59-123 7-76 (92)
87 COG5064 SRP1 Karyopherin (impo 93.8 0.41 9E-06 50.2 10.0 189 4-193 222-443 (526)
88 smart00638 LPD_N Lipoprotein N 93.7 14 0.00031 42.5 23.8 75 294-371 493-568 (574)
89 KOG1517|consensus 93.3 0.49 1.1E-05 56.1 10.4 132 19-155 513-670 (1387)
90 PF10363 DUF2435: Protein of u 93.2 0.76 1.7E-05 39.6 9.2 66 92-157 5-73 (92)
91 PF12830 Nipped-B_C: Sister ch 93.0 0.74 1.6E-05 45.1 10.0 68 59-126 12-81 (187)
92 KOG4224|consensus 92.8 16 0.00034 39.2 22.2 176 17-192 166-362 (550)
93 COG1470 Predicted membrane pro 92.8 0.37 8E-06 52.6 8.1 68 535-605 395-463 (513)
94 KOG0915|consensus 92.8 34 0.00074 43.0 28.0 343 16-385 1033-1431(1702)
95 PF12719 Cnd3: Nuclear condens 92.5 6.9 0.00015 41.1 17.3 54 330-383 40-95 (298)
96 PF01347 Vitellogenin_N: Lipop 92.3 0.29 6.3E-06 56.9 7.1 102 54-159 489-592 (618)
97 COG5064 SRP1 Karyopherin (impo 92.2 1 2.2E-05 47.4 10.0 195 57-292 159-379 (526)
98 PF12460 MMS19_C: RNAPII trans 91.8 12 0.00025 41.4 18.8 45 279-323 362-407 (415)
99 PF05804 KAP: Kinesin-associat 91.7 34 0.00073 40.5 25.6 300 57-403 292-634 (708)
100 KOG0413|consensus 91.7 7.1 0.00015 46.4 16.8 100 56-155 577-684 (1529)
101 PF05918 API5: Apoptosis inhib 91.6 2.3 5.1E-05 48.3 12.9 114 19-133 24-140 (556)
102 PF10633 NPCBM_assoc: NPCBM-as 91.5 0.42 9.2E-06 39.6 5.4 67 536-605 4-71 (78)
103 KOG2025|consensus 91.3 4.3 9.4E-05 46.7 14.4 136 16-152 83-255 (892)
104 KOG1949|consensus 91.3 2 4.4E-05 49.1 11.8 135 31-165 101-258 (1005)
105 KOG1525|consensus 91.3 31 0.00067 43.3 22.8 160 331-491 236-403 (1266)
106 PF12719 Cnd3: Nuclear condens 91.2 5.4 0.00012 42.0 14.7 102 54-155 26-142 (298)
107 COG5181 HSH155 U2 snRNP splice 91.2 33 0.0007 39.3 26.4 111 83-193 597-717 (975)
108 PF12755 Vac14_Fab1_bd: Vacuol 91.1 1.1 2.4E-05 39.0 7.8 76 106-181 2-85 (97)
109 KOG1949|consensus 90.8 2.3 5E-05 48.8 11.6 137 53-191 172-329 (1005)
110 KOG1020|consensus 90.8 1 2.2E-05 55.5 9.5 109 315-423 813-926 (1692)
111 KOG1822|consensus 90.6 26 0.00057 44.9 21.1 100 55-154 876-986 (2067)
112 KOG2956|consensus 90.5 3.1 6.7E-05 45.7 12.0 188 296-493 302-507 (516)
113 KOG0915|consensus 90.4 59 0.0013 41.1 27.6 161 19-180 819-1054(1702)
114 KOG1242|consensus 89.7 43 0.00092 38.3 28.0 295 55-396 96-418 (569)
115 PF14664 RICTOR_N: Rapamycin-i 88.7 26 0.00056 38.2 17.7 200 289-489 33-265 (371)
116 KOG2062|consensus 88.6 1.9 4.2E-05 49.6 9.0 138 7-156 473-618 (929)
117 KOG2062|consensus 88.2 2.9 6.3E-05 48.3 10.0 137 7-152 509-649 (929)
118 KOG2140|consensus 87.9 6 0.00013 44.0 11.9 158 337-497 167-351 (739)
119 KOG2274|consensus 87.4 73 0.0016 38.2 21.9 130 65-194 501-647 (1005)
120 PF08713 DNA_alkylation: DNA a 86.5 1.6 3.6E-05 43.1 6.5 73 59-131 124-196 (213)
121 PF01347 Vitellogenin_N: Lipop 86.4 17 0.00036 42.3 15.7 109 257-372 500-613 (618)
122 PF02985 HEAT: HEAT repeat; I 85.8 1.1 2.4E-05 30.1 3.3 29 128-156 1-29 (31)
123 cd06561 AlkD_like A new struct 85.6 18 0.00039 35.1 13.3 66 93-159 108-173 (197)
124 KOG0211|consensus 85.5 50 0.0011 39.4 18.6 250 16-310 396-664 (759)
125 COG5116 RPN2 26S proteasome re 85.4 2.2 4.8E-05 47.7 7.0 133 10-155 473-614 (926)
126 KOG1991|consensus 85.2 97 0.0021 37.5 32.5 432 14-473 32-594 (1010)
127 PF08167 RIX1: rRNA processing 84.8 16 0.00035 34.9 12.1 122 277-425 20-150 (165)
128 KOG2759|consensus 84.6 68 0.0015 35.2 20.9 83 401-488 344-433 (442)
129 KOG2160|consensus 83.7 17 0.00037 38.8 12.6 93 63-155 132-239 (342)
130 KOG1248|consensus 81.6 1.5E+02 0.0031 36.8 28.5 276 103-420 586-900 (1176)
131 KOG0567|consensus 81.4 2.4 5.2E-05 43.3 5.0 56 56-115 219-276 (289)
132 PF03224 V-ATPase_H_N: V-ATPas 81.3 34 0.00074 36.1 14.1 173 138-349 68-272 (312)
133 PF14664 RICTOR_N: Rapamycin-i 81.1 10 0.00022 41.3 10.2 132 21-154 28-174 (371)
134 cd03568 VHS_STAM VHS domain fa 80.9 43 0.00093 31.3 13.0 109 248-386 5-115 (144)
135 COG5116 RPN2 26S proteasome re 80.1 6.6 0.00014 44.2 8.2 129 19-155 516-649 (926)
136 cd06561 AlkD_like A new struct 79.7 3.5 7.6E-05 40.1 5.6 71 62-132 112-183 (197)
137 KOG1943|consensus 79.5 1.6E+02 0.0035 36.1 31.2 71 85-155 336-408 (1133)
138 PF00790 VHS: VHS domain; Int 79.1 16 0.00034 33.9 9.5 91 27-117 14-116 (140)
139 PF12460 MMS19_C: RNAPII trans 78.5 1.1E+02 0.0024 33.8 17.5 127 44-173 261-411 (415)
140 PF12765 Cohesin_HEAT: HEAT re 78.1 2.8 6.1E-05 30.5 3.2 25 89-113 17-41 (42)
141 PF12530 DUF3730: Protein of u 78.1 82 0.0018 31.9 17.2 123 256-381 10-151 (234)
142 PF11698 V-ATPase_H_C: V-ATPas 78.0 11 0.00024 34.0 7.7 88 398-489 18-111 (119)
143 KOG4413|consensus 77.8 1E+02 0.0022 32.8 23.3 165 27-191 91-284 (524)
144 KOG2213|consensus 77.2 1.2E+02 0.0025 33.2 20.3 52 106-157 40-91 (460)
145 KOG1820|consensus 76.9 84 0.0018 37.8 16.6 191 85-323 248-457 (815)
146 KOG1248|consensus 76.4 2E+02 0.0044 35.6 28.2 166 257-423 664-861 (1176)
147 KOG0413|consensus 76.3 11 0.00024 45.0 8.8 108 48-156 961-1073(1529)
148 PF08167 RIX1: rRNA processing 76.2 28 0.00061 33.2 10.5 109 84-194 19-144 (165)
149 PF13251 DUF4042: Domain of un 76.0 12 0.00027 36.4 8.0 44 34-82 18-67 (182)
150 PF12530 DUF3730: Protein of u 75.7 87 0.0019 31.7 14.5 109 51-159 34-154 (234)
151 PF08752 COP-gamma_platf: Coat 75.7 2.9 6.4E-05 39.4 3.5 67 525-594 37-104 (151)
152 KOG2160|consensus 75.6 28 0.0006 37.3 11.0 99 95-194 129-241 (342)
153 PF05004 IFRD: Interferon-rela 75.2 1.2E+02 0.0025 32.2 16.0 170 20-189 45-253 (309)
154 KOG4413|consensus 74.8 1.2E+02 0.0027 32.3 26.2 73 83-155 75-156 (524)
155 cd03561 VHS VHS domain family; 74.6 35 0.00076 31.3 10.4 78 42-119 24-112 (133)
156 KOG4653|consensus 74.4 1.3E+02 0.0028 36.0 16.6 140 246-419 767-919 (982)
157 PF02854 MIF4G: MIF4G domain; 74.3 63 0.0014 31.0 12.8 78 336-414 2-80 (209)
158 PF10274 ParcG: Parkin co-regu 73.9 24 0.00051 34.5 9.3 78 95-173 43-129 (183)
159 PF12830 Nipped-B_C: Sister ch 73.6 20 0.00043 35.0 8.9 78 86-166 4-84 (187)
160 KOG1293|consensus 73.3 35 0.00075 39.3 11.6 127 66-192 388-532 (678)
161 cd07064 AlkD_like_1 A new stru 73.2 85 0.0018 31.2 13.5 132 23-159 51-182 (208)
162 cd03567 VHS_GGA VHS domain fam 72.6 82 0.0018 29.3 13.2 70 248-319 6-76 (139)
163 COG5231 VMA13 Vacuolar H+-ATPa 72.0 72 0.0016 33.8 12.6 237 246-488 148-423 (432)
164 KOG2032|consensus 71.9 18 0.00039 40.3 8.7 91 64-154 267-369 (533)
165 KOG4535|consensus 71.7 7.2 0.00016 43.1 5.6 122 27-155 21-178 (728)
166 PF10274 ParcG: Parkin co-regu 70.6 10 0.00022 37.0 5.9 51 86-136 76-126 (183)
167 PF14500 MMS19_N: Dos2-interac 70.6 34 0.00074 35.4 10.2 63 355-417 2-68 (262)
168 KOG1293|consensus 69.7 1.5E+02 0.0032 34.4 15.5 131 62-192 338-489 (678)
169 PF12765 Cohesin_HEAT: HEAT re 69.6 7.8 0.00017 28.1 3.8 38 113-150 2-41 (42)
170 KOG0168|consensus 69.5 2.6E+02 0.0056 33.7 17.8 137 57-193 169-323 (1051)
171 PF06685 DUF1186: Protein of u 69.2 21 0.00045 36.6 8.1 66 94-159 115-186 (249)
172 KOG2933|consensus 68.5 39 0.00085 35.6 9.9 117 36-155 71-198 (334)
173 PF11865 DUF3385: Domain of un 67.4 62 0.0013 30.7 10.6 139 48-191 7-155 (160)
174 KOG3723|consensus 67.3 85 0.0018 35.7 12.6 75 414-489 224-298 (851)
175 PF05004 IFRD: Interferon-rela 67.3 1.7E+02 0.0038 30.9 15.0 155 2-156 63-260 (309)
176 cd03569 VHS_Hrs_Vps27p VHS dom 67.0 99 0.0021 28.8 11.6 69 248-318 9-78 (142)
177 PF14764 SPG48: AP-5 complex s 65.2 22 0.00049 39.5 7.9 87 412-498 291-401 (459)
178 KOG1243|consensus 64.8 25 0.00055 40.7 8.4 137 19-155 331-475 (690)
179 COG5218 YCG1 Chromosome conden 64.6 50 0.0011 37.7 10.3 98 16-113 89-193 (885)
180 cd03561 VHS VHS domain family; 64.2 1.2E+02 0.0025 27.8 13.5 68 251-320 8-76 (133)
181 KOG1991|consensus 63.5 2.2E+02 0.0048 34.7 15.8 101 52-152 459-572 (1010)
182 smart00288 VHS Domain present 63.1 46 0.001 30.6 8.5 81 38-118 20-110 (133)
183 cd03568 VHS_STAM VHS domain fa 62.9 87 0.0019 29.3 10.4 87 109-195 19-112 (144)
184 KOG0211|consensus 62.7 3.4E+02 0.0073 32.6 26.8 391 85-488 232-659 (759)
185 PF00790 VHS: VHS domain; Int 62.5 99 0.0022 28.5 10.8 88 108-195 23-120 (140)
186 PF07718 Coatamer_beta_C: Coat 61.9 21 0.00045 33.2 5.9 58 538-598 70-127 (140)
187 PF11935 DUF3453: Domain of un 59.8 23 0.0005 36.1 6.5 23 98-120 1-23 (239)
188 PF00514 Arm: Armadillo/beta-c 59.6 18 0.00039 25.6 4.1 27 91-117 13-39 (41)
189 PF08506 Cse1: Cse1; InterPro 59.3 17 0.00037 39.5 5.8 60 55-114 305-370 (370)
190 smart00288 VHS Domain present 59.1 89 0.0019 28.6 9.7 87 109-195 19-113 (133)
191 KOG2038|consensus 58.7 3.8E+02 0.0083 31.9 18.1 61 95-155 309-369 (988)
192 cd03569 VHS_Hrs_Vps27p VHS dom 58.3 58 0.0013 30.3 8.4 74 41-118 27-113 (142)
193 cd03567 VHS_GGA VHS domain fam 58.3 1.1E+02 0.0024 28.4 10.2 87 109-195 20-118 (139)
194 KOG2973|consensus 58.3 63 0.0014 34.1 9.2 61 94-157 7-72 (353)
195 PF11698 V-ATPase_H_C: V-ATPas 58.0 22 0.00048 32.1 5.2 51 68-118 57-114 (119)
196 PF01603 B56: Protein phosphat 57.6 3E+02 0.0065 30.4 15.4 217 69-318 108-378 (409)
197 KOG2973|consensus 57.6 80 0.0017 33.4 9.8 97 58-157 6-112 (353)
198 PF11935 DUF3453: Domain of un 56.8 1.1E+02 0.0023 31.2 10.8 60 135-194 1-73 (239)
199 PF14225 MOR2-PAG1_C: Cell mor 56.6 1.5E+02 0.0032 30.7 11.8 105 336-443 134-245 (262)
200 PF05327 RRN3: RNA polymerase 56.5 1.7E+02 0.0036 33.9 13.5 128 345-477 67-214 (563)
201 KOG0946|consensus 56.3 1.3E+02 0.0029 35.6 12.2 154 284-437 24-219 (970)
202 COG5218 YCG1 Chromosome conden 55.8 1.6E+02 0.0035 33.8 12.3 69 85-153 86-158 (885)
203 PF14631 FancD2: Fanconi anaem 55.5 3.4E+02 0.0074 35.1 16.8 110 84-193 429-542 (1426)
204 PF06483 ChiC: Chitinase C; I 55.5 40 0.00087 32.5 6.8 41 579-625 127-167 (180)
205 KOG1943|consensus 55.1 5E+02 0.011 32.2 18.7 226 122-396 336-589 (1133)
206 PF12231 Rif1_N: Rap1-interact 55.0 1.7E+02 0.0037 31.8 12.7 128 28-155 3-162 (372)
207 PF03130 HEAT_PBS: PBS lyase H 54.8 14 0.00031 23.9 2.6 25 71-95 1-25 (27)
208 PF07571 DUF1546: Protein of u 54.7 46 0.001 28.5 6.5 60 100-159 16-81 (92)
209 PF11701 UNC45-central: Myosin 53.8 69 0.0015 30.3 8.3 92 101-192 16-116 (157)
210 PF11701 UNC45-central: Myosin 53.6 31 0.00067 32.7 5.8 109 67-175 17-138 (157)
211 KOG1967|consensus 53.5 37 0.00081 40.6 7.3 107 12-118 903-1023(1030)
212 KOG1820|consensus 53.2 2.5E+02 0.0054 34.0 14.3 127 29-155 306-442 (815)
213 KOG2025|consensus 52.3 4.7E+02 0.01 31.0 28.8 70 86-155 81-154 (892)
214 KOG2759|consensus 50.9 18 0.00039 39.4 4.1 51 68-118 380-437 (442)
215 KOG1517|consensus 50.8 4.2E+02 0.0092 32.8 15.2 174 283-489 513-728 (1387)
216 PF14676 FANCI_S2: FANCI solen 50.7 81 0.0018 30.0 8.1 110 336-446 37-151 (158)
217 cd03572 ENTH_epsin_related ENT 50.2 30 0.00064 31.5 4.8 39 86-124 34-72 (122)
218 PF12074 DUF3554: Domain of un 49.7 1.1E+02 0.0025 32.5 10.2 68 52-119 19-90 (339)
219 PF11707 Npa1: Ribosome 60S bi 49.3 3.6E+02 0.0077 28.8 16.8 113 289-410 34-154 (330)
220 KOG4653|consensus 49.1 2.2E+02 0.0047 34.3 12.4 67 64-130 736-809 (982)
221 PF04388 Hamartin: Hamartin pr 48.5 62 0.0014 38.2 8.4 95 74-171 55-155 (668)
222 cd03565 VHS_Tom1 VHS domain fa 48.0 2.3E+02 0.005 26.3 13.0 70 247-318 5-76 (141)
223 PF14874 PapD-like: Flagellar- 47.8 1.2E+02 0.0026 25.9 8.2 80 535-623 18-99 (102)
224 PF05536 Neurochondrin: Neuroc 46.8 4.8E+02 0.01 30.0 15.0 176 17-194 4-214 (543)
225 cd00197 VHS_ENTH_ANTH VHS, ENT 46.7 1.1E+02 0.0024 26.9 8.0 88 256-345 13-114 (115)
226 PF07539 DRIM: Down-regulated 46.3 74 0.0016 29.6 7.0 51 87-140 14-64 (141)
227 KOG2933|consensus 45.9 1.1E+02 0.0025 32.3 8.8 131 19-152 89-230 (334)
228 KOG2032|consensus 45.9 4.9E+02 0.011 29.4 23.2 107 86-192 254-373 (533)
229 PF00927 Transglut_C: Transglu 45.9 29 0.00063 30.3 4.1 58 535-596 13-78 (107)
230 KOG2199|consensus 45.8 1.5E+02 0.0034 32.2 9.9 92 22-113 12-112 (462)
231 KOG1992|consensus 45.2 6.3E+02 0.014 30.5 28.9 296 58-393 9-403 (960)
232 PF11614 FixG_C: IG-like fold 44.7 42 0.0009 29.9 5.0 55 539-598 33-88 (118)
233 PF12074 DUF3554: Domain of un 44.4 4.2E+02 0.009 28.2 18.0 112 70-181 2-124 (339)
234 PF09759 Atx10homo_assoc: Spin 44.2 48 0.001 29.1 5.0 60 368-427 2-68 (102)
235 PF07539 DRIM: Down-regulated 43.6 59 0.0013 30.3 5.9 30 126-155 16-45 (141)
236 KOG2137|consensus 43.4 3.5E+02 0.0077 31.8 13.0 148 6-154 333-494 (700)
237 cd08050 TAF6 TATA Binding Prot 43.3 3.3E+02 0.0072 29.3 12.4 138 18-156 178-340 (343)
238 PF07749 ERp29: Endoplasmic re 43.0 1.1E+02 0.0024 26.3 7.1 57 360-418 13-73 (95)
239 cd00238 ERp29c ERp29 and ERp38 42.0 2.1E+02 0.0045 24.6 8.6 58 360-419 11-72 (93)
240 PF08623 TIP120: TATA-binding 42.0 35 0.00075 32.9 4.1 53 101-154 38-92 (169)
241 cd00256 VATPase_H VATPase_H, r 41.5 28 0.00061 38.6 3.9 23 95-117 401-423 (429)
242 PF07705 CARDB: CARDB; InterP 41.0 42 0.0009 28.3 4.2 58 533-595 15-72 (101)
243 KOG0168|consensus 40.9 3.6E+02 0.0078 32.5 12.5 129 330-459 181-326 (1051)
244 PF00514 Arm: Armadillo/beta-c 40.4 55 0.0012 23.0 4.1 28 353-380 13-40 (41)
245 PF10521 DUF2454: Protein of u 39.9 1.9E+02 0.0041 30.1 9.7 34 280-313 117-151 (282)
246 PF11611 DUF4352: Domain of un 39.8 63 0.0014 28.5 5.4 71 535-605 34-112 (123)
247 KOG3687|consensus 39.7 3.7E+02 0.0081 33.0 12.4 174 278-453 63-288 (1697)
248 KOG1967|consensus 39.6 1.3E+02 0.0028 36.3 8.9 102 283-384 868-985 (1030)
249 PF13001 Ecm29: Proteasome sta 38.7 77 0.0017 36.0 7.0 124 29-155 296-442 (501)
250 KOG2753|consensus 38.6 1.8E+02 0.0039 31.0 9.0 121 351-495 15-137 (378)
251 PF14500 MMS19_N: Dos2-interac 38.5 4.6E+02 0.01 27.0 21.0 61 326-386 179-242 (262)
252 KOG2956|consensus 37.2 6.5E+02 0.014 28.3 15.0 157 329-489 299-473 (516)
253 smart00185 ARM Armadillo/beta- 37.2 52 0.0011 22.5 3.6 26 92-117 14-39 (41)
254 COG5656 SXM1 Importin, protein 37.1 2.7E+02 0.006 33.0 10.7 104 55-158 460-573 (970)
255 smart00567 EZ_HEAT E-Z type HE 37.0 36 0.00077 22.3 2.5 22 70-91 2-23 (30)
256 PF00635 Motile_Sperm: MSP (Ma 36.7 57 0.0012 28.2 4.5 52 536-593 17-68 (109)
257 PF11865 DUF3385: Domain of un 36.0 1.4E+02 0.0031 28.3 7.3 35 352-386 10-45 (160)
258 PF06685 DUF1186: Protein of u 35.9 4.1E+02 0.0088 27.3 11.0 46 355-400 114-161 (249)
259 KOG2011|consensus 35.7 4.5E+02 0.0098 32.6 12.8 105 48-152 275-395 (1048)
260 PF10521 DUF2454: Protein of u 35.7 1.2E+02 0.0025 31.7 7.4 40 85-124 114-153 (282)
261 PF11864 DUF3384: Domain of un 35.6 6.8E+02 0.015 28.1 30.5 241 244-488 173-461 (464)
262 PF06159 DUF974: Protein of un 35.6 1.4E+02 0.003 30.7 7.6 77 533-609 10-93 (249)
263 KOG2081|consensus 35.3 1.8E+02 0.0038 33.2 8.8 98 366-466 366-466 (559)
264 PF09450 DUF2019: Domain of un 35.2 51 0.0011 29.2 3.8 52 95-152 52-103 (106)
265 PF08389 Xpo1: Exportin 1-like 34.9 2.1E+02 0.0045 25.7 8.2 38 104-141 100-140 (148)
266 PF14676 FANCI_S2: FANCI solen 34.7 2.2E+02 0.0047 27.1 8.3 116 37-153 37-158 (158)
267 KOG2011|consensus 33.7 3.7E+02 0.008 33.3 11.7 166 280-460 280-455 (1048)
268 KOG2274|consensus 33.3 5.7E+02 0.012 31.1 12.7 100 57-159 6-126 (1005)
269 PF14663 RasGEF_N_2: Rapamycin 33.1 67 0.0015 28.7 4.4 30 129-158 10-39 (115)
270 KOG2005|consensus 32.7 2.4E+02 0.0053 32.9 9.4 120 69-194 622-744 (878)
271 TIGR01451 B_ant_repeat conserv 32.3 85 0.0019 23.9 4.2 35 535-572 10-44 (53)
272 cd00197 VHS_ENTH_ANTH VHS, ENT 32.3 1.5E+02 0.0033 26.1 6.5 64 96-159 6-69 (115)
273 PF05536 Neurochondrin: Neuroc 32.1 5E+02 0.011 29.9 12.2 22 329-350 69-90 (543)
274 PF08389 Xpo1: Exportin 1-like 30.8 68 0.0015 29.0 4.2 36 104-139 2-38 (148)
275 cd07064 AlkD_like_1 A new stru 30.6 2.6E+02 0.0057 27.6 8.6 70 60-130 120-190 (208)
276 smart00185 ARM Armadillo/beta- 29.3 86 0.0019 21.4 3.6 28 128-155 13-40 (41)
277 KOG2137|consensus 28.5 1.1E+03 0.023 28.1 18.7 123 262-385 368-500 (700)
278 KOG1822|consensus 28.3 1.4E+03 0.031 30.4 15.6 158 128-318 1834-2020(2067)
279 KOG2213|consensus 28.0 2.8E+02 0.006 30.4 8.4 80 20-100 27-106 (460)
280 PF13251 DUF4042: Domain of un 28.0 5.7E+02 0.012 24.9 10.5 52 297-348 2-71 (182)
281 PF05753 TRAP_beta: Translocon 27.7 3.1E+02 0.0067 26.7 8.2 59 534-593 35-96 (181)
282 PF08569 Mo25: Mo25-like; Int 27.5 7.9E+02 0.017 26.4 13.0 110 294-432 177-296 (335)
283 KOG2149|consensus 27.5 5.8E+02 0.012 28.0 10.8 96 94-189 62-166 (393)
284 PF01345 DUF11: Domain of unkn 27.2 1E+02 0.0022 24.9 4.2 37 533-572 37-73 (76)
285 PF08568 Kinetochor_Ybp2: Unch 26.8 5.2E+02 0.011 30.3 11.4 55 98-154 450-505 (633)
286 COG5656 SXM1 Importin, protein 26.6 5.3E+02 0.011 30.8 10.8 86 69-154 430-526 (970)
287 PF09624 DUF2393: Protein of u 26.6 1.8E+02 0.0039 27.0 6.3 70 536-605 61-144 (149)
288 KOG1087|consensus 26.0 3.1E+02 0.0066 31.0 8.8 93 249-343 7-109 (470)
289 KOG1684|consensus 25.7 2.3E+02 0.0049 30.7 7.3 50 329-378 257-307 (401)
290 PF03896 TRAP_alpha: Transloco 24.5 5.2E+02 0.011 27.1 9.7 82 521-605 82-171 (285)
291 KOG0392|consensus 24.3 1.4E+02 0.003 37.4 5.9 116 60-175 821-959 (1549)
292 KOG3060|consensus 24.0 4.4E+02 0.0095 27.3 8.6 91 48-141 66-156 (289)
293 KOG4524|consensus 23.9 3.1E+02 0.0066 33.5 8.5 96 86-188 799-902 (1014)
294 PLN03076 ARF guanine nucleotid 23.9 1.8E+03 0.039 29.6 16.0 231 258-488 1148-1484(1780)
295 PF12397 U3snoRNP10: U3 small 23.5 5.2E+02 0.011 22.8 10.0 71 350-420 4-76 (121)
296 PF12333 Ipi1_N: Rix1 complex 23.4 2E+02 0.0044 25.0 5.6 38 87-124 8-45 (102)
297 PF03224 V-ATPase_H_N: V-ATPas 23.4 8.7E+02 0.019 25.4 16.1 64 92-155 107-178 (312)
298 PF08626 TRAPPC9-Trs120: Trans 23.3 1.7E+02 0.0036 37.2 6.9 29 533-561 795-823 (1185)
299 PF08506 Cse1: Cse1; InterPro 23.0 3.9E+02 0.0085 29.1 8.9 83 66-149 266-368 (370)
300 KOG4535|consensus 23.0 2E+02 0.0044 32.3 6.4 88 67-155 496-602 (728)
301 PF13925 Katanin_con80: con80 22.8 5.9E+02 0.013 24.2 9.1 83 333-418 13-98 (164)
302 COG5110 RPN1 26S proteasome re 22.2 6.4E+02 0.014 29.0 10.0 89 65-155 614-704 (881)
303 KOG2038|consensus 20.7 2.9E+02 0.0063 32.9 7.3 112 29-143 281-394 (988)
304 PF09759 Atx10homo_assoc: Spin 20.7 1.4E+02 0.003 26.3 3.9 26 99-124 39-64 (102)
305 PF14728 PHTB1_C: PTHB1 C-term 20.4 2.2E+02 0.0047 31.2 6.2 82 548-634 8-96 (377)
No 1
>KOG1060|consensus
Probab=100.00 E-value=7.4e-124 Score=1010.49 Aligned_cols=611 Identities=59% Similarity=0.895 Sum_probs=570.1
Q ss_pred hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267 2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS 81 (645)
Q Consensus 2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~ 81 (645)
||||||++|++|+|+|.+||+|||+++|+|.++|||+|+||.+||+++||+++|+||||||+|+||||++||.|||+|++
T Consensus 55 AmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSs 134 (968)
T KOG1060|consen 55 AMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSS 134 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhh
Q psy8267 82 IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDM 161 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~l 161 (645)
||.+.++|+++.+|++|..|++|||||+||+||.|+|+++|+..+++.+.|++||.|.+|.|+++|++||.|+||++.++
T Consensus 135 IRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldL 214 (968)
T KOG1060|consen 135 IRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDL 214 (968)
T ss_pred cchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccccccccc
Q psy8267 162 IHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTEL 241 (645)
Q Consensus 162 i~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 241 (645)
||++|||||++|.|.++|+|+.+|++|.||+|.+|++|+..++...... +.++++.-| ...+.+|.+
T Consensus 215 IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~---~~~~~~~~~----------~~~~~P~~~ 281 (968)
T KOG1060|consen 215 IHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG---RSCNLKDKY----------NEIRTPYVN 281 (968)
T ss_pred hhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc---ccccccccc----------cccCCCccc
Confidence 9999999999999999999999999999999999999976433111100 111111111 123567899
Q ss_pred ChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhhcccchhhhhc
Q psy8267 242 DPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLK 321 (645)
Q Consensus 242 d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~s~~niryv~L~~l~~l~~~~p~~~~~~~~ 321 (645)
|+|++++|+++.|++||+|++|+|+|+++++|++|......++++|+++|++++++||++|++|..|+.++|.+|+||++
T Consensus 282 d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lK 361 (968)
T KOG1060|consen 282 DPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLK 361 (968)
T ss_pred CccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhh
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccC
Q psy8267 322 SFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYS 401 (645)
Q Consensus 322 ~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~ 401 (645)
+||++..||+.||..||++|..|+|++|+..|++||++|+.+.|.+|+..+|++||+||.+.-.+.+.|+++|++|+++.
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llssh 441 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSH 441 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHHHHHHHhhcCCchHHH
Q psy8267 402 DEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVK 481 (645)
Q Consensus 402 ~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr~l~~~f~~e~~~vk 481 (645)
+..|+.|+|.+|+.+++++|..|.+++.+|++.++.+..|.||++++|++|||+..++.++||+||+++|+|.+|.++||
T Consensus 442 de~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evK 521 (968)
T KOG1060|consen 442 DELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVK 521 (968)
T ss_pred cchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh------------------------------------------------------------------------
Q psy8267 482 LQVLNLAP------------------------------------------------------------------------ 489 (645)
Q Consensus 482 ~~iL~~~~------------------------------------------------------------------------ 489 (645)
+|||++++
T Consensus 522 lQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~~Ls~h~~ei~l~~Kpa~~~es~f~~~~~ 601 (968)
T KOG1060|consen 522 LQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARFLRQLISPLEALSKHAREIFLASKPAPVLESSFKDRHY 601 (968)
T ss_pred HHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHHHHHHhccHHHHHHHHHHHhhccCCCccCcccccCCCc
Confidence 99999999
Q ss_pred ----------hhcccCCCCCC-----------------------------------------------------------
Q psy8267 490 ----------VEAAGITTLPP----------------------------------------------------------- 500 (645)
Q Consensus 490 ----------~~a~~y~~l~~----------------------------------------------------------- 500 (645)
..|.||.+||+
T Consensus 602 ~~gslS~lLn~~a~GY~~lp~~~~~~~d~~~~~~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e~ge~~dsn~~ 681 (968)
T KOG1060|consen 602 QLGSLSLLLNAPAPGYEPLPNWPAVAPDPFPDSERAKLLDSDSEEEETGDDESWSDPESESGESSNFSREGGEENDSNEE 681 (968)
T ss_pred ccchHHHHhcCcCcCCccCCCccccCCCCCcchhhcccccCCccccccccccCCCCCccccccCCccccccccccccccc
Confidence 15788888774
Q ss_pred --------------------------------------------------------C--CC----C--------------
Q psy8267 501 --------------------------------------------------------A--FT----S-------------- 504 (645)
Q Consensus 501 --------------------------------------------------------~--v~----~-------------- 504 (645)
+ ++ +
T Consensus 682 ~~~~~d~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~n~~P~~~~~~~~~l~~d~~~~~~~~ 761 (968)
T KOG1060|consen 682 KDSEDDFSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQNGKPVLPERNDPDLAADDEFFSLTG 761 (968)
T ss_pred ccccccccccchhccccccccccccccccccCCCccCCCcccccccccccccCCCCCCCCCCCCCChhhhcccccccccc
Confidence 0 00 0
Q ss_pred ---------CcH-----HHHHHHHhCCCCcceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcc
Q psy8267 505 ---------PRY-----TEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMS 570 (645)
Q Consensus 505 ---------p~~-----~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~ 570 (645)
|.+ .++|+++.|. | +.+.|+|+|.+ . .++.+.|+|+++.++.++++ +.|.||+
T Consensus 762 s~~~~~~~~p~~i~~~~~ell~~~~g~-g-l~~~y~f~r~~-----~-~~i~~~~~n~~~~~~~~~~l-----~~p~gm~ 828 (968)
T KOG1060|consen 762 SRNSKPLKIPTHIEEKSIELLNEVEGS-G-LDLEYSFSRLP-----D-VSISLHFTNKSDLELLGIHL-----KLPAGMS 828 (968)
T ss_pred ccccccccCCccCcchhHhhhhhcccC-C-cceeeeccCCC-----C-eeEEEecccCCCccccccee-----ecccccc
Confidence 221 7888888888 8 88999999965 2 78999999999999999999 4468999
Q ss_pred cccCCCCcccCCCCceEEEEeEEecCCCCCCccEEeecccCCCCCccceEeeCCcccccccccCChHHHHhhhcC
Q psy8267 571 MQPFPEIASIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPVGEWLRAVTMSTALFDAEKGN 645 (645)
Q Consensus 571 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~pv~~~~~~~~~~~~~f~~~~~~ 645 (645)
+++|+.+.+++||++.++.++|+|+|+|+.++|++| +++| .+++++||||+++|+.|++.+|.+||||
T Consensus 829 i~ef~~i~s~~pg~~~~~~~~i~F~dst~~~~~~l~----~~~g---~~~~~~pvge~~~~v~~~~~~~~~E~~~ 896 (968)
T KOG1060|consen 829 IKEFSPIESLPPGASASVVLGIDFCDSTQAAEWQLL----TDDG---RVRFQPPVGELVQPVRMSEEDFKKERGK 896 (968)
T ss_pred ccccccccccCCCcceeeeeeeeccccccceeEEEE----eccC---cEEecCchhhhhccccCCHHHHHhhhhh
Confidence 999999999999999999999999999999999999 5676 9999999999999999999999999986
No 2
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=5.6e-88 Score=769.73 Aligned_cols=483 Identities=30% Similarity=0.438 Sum_probs=439.4
Q ss_pred hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267 2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS 81 (645)
Q Consensus 2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~ 81 (645)
||||+|++|++|+|+|++||+|+|+++|+|+++|||||+|+.+|++.+||+++|+||+|+||++|+||++||+|||+||+
T Consensus 52 alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~ 131 (746)
T PTZ00429 52 AVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMC 131 (746)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH--HHHHHHHHHhhcCCChhHHHHHHHHHHHHC---h
Q psy8267 82 IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK--EELVLVIEKLLQDKTTLVVGSAVMAFEEVC---P 156 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~--~~~~~~l~~lL~D~~~~V~~sav~~l~ei~---~ 156 (645)
|+.+++++.++.+|++++.|++|||||+||+|++|+|+.+|+.+ .+|.+.+.++|+|+|++|+++|+.++.+|+ |
T Consensus 132 Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 132 IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999986 479999999999999999999999999997 4
Q ss_pred hhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccc
Q psy8267 157 ERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQ 236 (645)
Q Consensus 157 ~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~ 236 (645)
+.+++.|+++++||+.|.+++||+|+.+|++|.+|. |..
T Consensus 212 ~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~------P~~----------------------------------- 250 (746)
T PTZ00429 212 EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQR------PSD----------------------------------- 250 (746)
T ss_pred hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC------CCC-----------------------------------
Confidence 456788999999999999999999999999998876 632
Q ss_pred cccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh---HHH----HHHHHHHHHHhCCChhHHHHHHHHHHHHH
Q psy8267 237 VSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR---REV----AIIAKALVRLLRSSREVQTVVLTTIASLA 309 (645)
Q Consensus 237 ~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~---~~~----~~~~~~L~~lL~s~~niryv~L~~l~~l~ 309 (645)
+.+...+++.+.++++|+|+||+++|+++++++.+. +.+ .++..+|++|+++++|+||++|++|..++
T Consensus 251 -----~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 251 -----KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALL 325 (746)
T ss_pred -----cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHH
Confidence 123467889999999999999999999999988752 222 34567888888889999999999999999
Q ss_pred hhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHH
Q psy8267 310 VKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDT 389 (645)
Q Consensus 310 ~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~ 389 (645)
..+|++|++|++.|||+++||.+||++|||||+.|||++|++.|++||.+|+++.|.+|++++|++||+||.|+|..++|
T Consensus 326 ~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~ 405 (746)
T PTZ00429 326 VIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPD 405 (746)
T ss_pred HHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhh--ccCChHHHHHHHHHHHhcccccCCCchHHHHH
Q psy8267 390 CLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLS--DSITVPTARAAILWLLGEYSHLVPALGPDVLR 467 (645)
Q Consensus 390 ~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l--~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr 467 (645)
|+++|+++++.++++ ..|++.++++|+|++|+.+ ++..+++.+ +.+++|+||++++|++||||+.+++ ++++++
T Consensus 406 cV~~Ll~ll~~~~~~-v~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-a~~~L~ 481 (746)
T PTZ00429 406 CANLLLQIVDRRPEL-LPQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-GKDIIQ 481 (746)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHHHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-HHHHHH
Confidence 999999999987775 4588999999999999864 678888765 7889999999999999999999999 999999
Q ss_pred HHHHhhcCCchHHHHHHHHhhh-------------------------------hhcccCCCCCC----------CCCC--
Q psy8267 468 KAAITFVNEEDIVKLQVLNLAP-------------------------------VEAAGITTLPP----------AFTS-- 504 (645)
Q Consensus 468 ~l~~~f~~e~~~vk~~iL~~~~-------------------------------~~a~~y~~l~~----------~v~~-- 504 (645)
.++++|.+|+++||+|+||+++ .||..||+|-. .|+.
T Consensus 482 ~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv~~~~ 561 (746)
T PTZ00429 482 RFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVVHGQM 561 (746)
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHHcCCC
Confidence 9999999999999999999999 37888877321 2333
Q ss_pred Cc------H--HHHHHHHhCCCCcceeeEeeccccccc
Q psy8267 505 PR------Y--TEVLNKIGGGRGMLSALASFSRAPCLA 534 (645)
Q Consensus 505 p~------~--~~ll~~~~~~~~~l~~~~~~~~~~~~~ 534 (645)
|+ | .+++..+..+.|++++.|+.+...++-
T Consensus 562 ~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~ 599 (746)
T PTZ00429 562 VPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLP 599 (746)
T ss_pred CCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcC
Confidence 22 2 457777766668899999998877653
No 3
>KOG1077|consensus
Probab=100.00 E-value=3.7e-85 Score=701.22 Aligned_cols=597 Identities=18% Similarity=0.221 Sum_probs=501.2
Q ss_pred HHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC
Q psy8267 4 GTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIR 83 (645)
Q Consensus 4 kkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~ 83 (645)
-|+++..++|+|+++++|+.+++++|++|++|++||++++.+.++++|++-|++|+++|||.++||...++||+++|+||
T Consensus 60 ~KLlyI~llg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG 139 (938)
T KOG1077|consen 60 CKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIG 139 (938)
T ss_pred HHHHHHHHhcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHhhcCchhH--HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 84 VPMIIPIVMLAIKDSSLDM--SPYVRKTAAHAIPKLYSLDPEQK--EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 84 ~~ei~~~l~~~I~~~l~d~--~pyVRK~Aalal~kl~~~~p~~~--~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
..+|++.+..+|-|++.++ .+||||+||+|++++|+..||.+ .+|.++|..||+|.+.+|+.+|++++..++..++
T Consensus 140 ~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 140 SREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred cHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 9999999999999998664 89999999999999999999987 4899999999999999999999999998886554
Q ss_pred hhh----HHHHHHHHHHhc-------------CCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy8267 160 DMI----HKSYRKLCNLLV-------------DVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFY 222 (645)
Q Consensus 160 ~li----~~~~~kL~~~L~-------------~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~ 222 (645)
+-. .+.+.+|.++.. -++||+|++++++|+.|.+ |.+.. +.
T Consensus 220 ~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~-----~~D~~--~r--------------- 277 (938)
T KOG1077|consen 220 ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT-----PEDPS--TR--------------- 277 (938)
T ss_pred HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC-----CCCch--HH---------------
Confidence 433 333344443321 1799999999999999852 32111 00
Q ss_pred CCcccccccccccccccccChhHHHHHHhhh-----hhhcCCCh--HHHHHHHHHHHhcCChH-HHHHHHHHHHHHhC-C
Q psy8267 223 DDETTRDTKNETSQVSTELDPDHRLLLKNAK-----PLLQSRNA--AVVMAVAQLFHHLAPRR-EVAIIAKALVRLLR-S 293 (645)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~-----~ll~s~n~--aVv~ea~~~i~~l~~~~-~~~~~~~~L~~lL~-s 293 (645)
.-+...++.+++... ...|++|+ ||+|||+++++|++++. .+.++++.|+.||+ +
T Consensus 278 ----------------~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r 341 (938)
T KOG1077|consen 278 ----------------ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR 341 (938)
T ss_pred ----------------HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc
Confidence 001112333444332 22455664 99999999999999864 47899999999996 8
Q ss_pred ChhHHHHHHHHHHHHHhhcc--cchhhhhceEE-Ec-CCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHH
Q psy8267 294 SREVQTVVLTTIASLAVKRR--ALFVPYLKSFY-VR-SSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFV 369 (645)
Q Consensus 294 ~~niryv~L~~l~~l~~~~p--~~~~~~~~~f~-~l-~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~ 369 (645)
++|+||++|+++.+|+...+ +.+..|+..++ .+ .+.|.+||++++|+||.||+.+|++.||.||+.|+.++|+.+|
T Consensus 342 E~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sir 421 (938)
T KOG1077|consen 342 ETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIR 421 (938)
T ss_pred cccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHH
Confidence 99999999999999987655 46678888887 44 4889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccC--ChHHHHHHH
Q psy8267 370 AATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSI--TVPTARAAI 447 (645)
Q Consensus 370 ~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i--~~~~ak~~~ 447 (645)
++++.+++++||||+++.+||||++++|++.+|+++++|+|.++.|++.|+|++|.++++++.++++.. ++..+|++
T Consensus 422 eeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvg- 500 (938)
T KOG1077|consen 422 EEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVG- 500 (938)
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhh-
Confidence 999999999999999999999999999999999999999999999999999999999999999999764 67778887
Q ss_pred HHHHhcccccCCC----chHHHHHHHHHhhcCCchHHHHHHHHhhh-----------------------------hhccc
Q psy8267 448 LWLLGEYSHLVPA----LGPDVLRKAAITFVNEEDIVKLQVLNLAP-----------------------------VEAAG 494 (645)
Q Consensus 448 iwilGEy~~~i~~----~~~diLr~l~~~f~~e~~~vk~~iL~~~~-----------------------------~~a~~ 494 (645)
+|++||||+++.+ -++..+..+...|...++.+|..+|+... |||+|
T Consensus 501 gyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi~~~v~~vFq~~~n~~D~ElQqRa~E 580 (938)
T KOG1077|consen 501 GYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEIKSNVQKVFQLYSNLIDVELQQRAVE 580 (938)
T ss_pred hhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChhhhHHHHHHHHhhcccCCHHHHHHHHH
Confidence 8999999999987 35578999999999999999999999988 69999
Q ss_pred CCCCCC--------CCCC--CcH----HHHHHHHhCCCC---------------------------------------cc
Q psy8267 495 ITTLPP--------AFTS--PRY----TEVLNKIGGGRG---------------------------------------ML 521 (645)
Q Consensus 495 y~~l~~--------~v~~--p~~----~~ll~~~~~~~~---------------------------------------~l 521 (645)
|++|.. +|++ ||| +.||.+++.+-+ ++
T Consensus 581 YLql~k~as~dvL~~vleeMPpF~er~ssll~kl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~tp~~v~~~s~st~~~~v 660 (938)
T KOG1077|consen 581 YLQLSKLASTDVLQTVLEEMPPFPERESSLLKKLKKKKPSAISLRAGAGPKTLANPPPVASEPTPSKVSKRSNSTDPLSV 660 (938)
T ss_pred HHHHHHhccchHHHHHHhhCCCCccccchHHHHhhccCCchhccccccCCcccCCCCcccCCCCcccccCCCCCCCcccC
Confidence 988543 4666 999 889999973310 00
Q ss_pred ------------------------------e-------eeEeeccccc-----c-------------cCCCceEEEEEEe
Q psy8267 522 ------------------------------S-------ALASFSRAPC-----L-------------ASPRMISVTLRLT 546 (645)
Q Consensus 522 ------------------------------~-------~~~~~~~~~~-----~-------------~~~~~~~~~l~~~ 546 (645)
+ ..|.|.|.++ + |+++.|++.|+++
T Consensus 661 ~~~p~~n~t~~~~~~~~~~~di~s~~~~~~s~~~~p~~~~~~f~r~~~k~~GVLfed~~iQIgvk~e~r~~~grl~Lfyg 740 (938)
T KOG1077|consen 661 PSPPPPNNTISSVNSQIPSVDIFSGLDGYYSRQILPGNAFYGFTRFCSKDNGVLFEDSLIQIGVKSETRNNLGRLYLFYG 740 (938)
T ss_pred CCCCCCCCCccCCCCCCCchhhhcCccccccccCCChhhhhhhhhheeccCcEEeeccceeEEEeeeccCcCCeEEEEec
Confidence 0 1266667655 1 7899999999999
Q ss_pred eCCCCCccceEeeeCCCCCCC-CcccccCCCCcccCCCCceEEEEeEE-ecCCCCCCccEEeecccCCCCCc-cceE--e
Q psy8267 547 NHHGAPLSRVRIDSEGSSLGH-GMSMQPFPEIASIDPGLAVEVSLGLN-LNDSTQPLSPRLVWGVEGEDGLS-APLK--L 621 (645)
Q Consensus 547 N~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~--l 621 (645)
|++..|+++|+..+-++..++ .+..+..|.-++++||.|+|+.+.+. ..++.+||.+.|+|.- ||. ..++ +
T Consensus 741 Nkts~~lt~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d~pil~isfk~----g~ti~~~ta~l 816 (938)
T KOG1077|consen 741 NKTSVPLTSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFEDPPILAISFKF----GGTINLKTAIL 816 (938)
T ss_pred ccccccccccceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeecccccCCeEEEEEEe----CCchhhhhhce
Confidence 999999999999877311111 23333224444999999999999888 9999999988887643 444 3555 9
Q ss_pred eCCc--ccccccccCChHHHHhhh
Q psy8267 622 SAPV--GEWLRAVTMSTALFDAEK 643 (645)
Q Consensus 622 ~~pv--~~~~~~~~~~~~~f~~~~ 643 (645)
++|+ ++|++|..|+.+|||.+-
T Consensus 817 ~lp~~iskf~~Pt~l~s~~Ff~rW 840 (938)
T KOG1077|consen 817 KLPVLISKFFQPTELTSEDFFSRW 840 (938)
T ss_pred echhhHhhhcCcccccHHHHHHHH
Confidence 9999 999999999999999864
No 4
>KOG1061|consensus
Probab=100.00 E-value=2.8e-76 Score=647.28 Aligned_cols=484 Identities=33% Similarity=0.518 Sum_probs=444.1
Q ss_pred hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267 2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS 81 (645)
Q Consensus 2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~ 81 (645)
|+||+|+.|+.|+|+|.+|++|+|++++.|++.|||+|+|+.+|+..+||++++++|+|.||..|+||.+|++|+|++|+
T Consensus 33 a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~ 112 (734)
T KOG1061|consen 33 AVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGC 112 (734)
T ss_pred HHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH--HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 82 IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK--EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~--~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
++.+.+.+++..++++++.|.+|||||+|+.|+.|+|+.+|++. .++.+.+..++.|+||+|+++|++++.+|.....
T Consensus 113 l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 113 LRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred EeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999986 5799999999999999999999999999974332
Q ss_pred -----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccc
Q psy8267 160 -----DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNET 234 (645)
Q Consensus 160 -----~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~ 234 (645)
.+.+...++++..+.+++||+|+.+|+.+++|. |+.+
T Consensus 193 ~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~------p~d~-------------------------------- 234 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV------PKDS-------------------------------- 234 (734)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC------CCCc--------------------------------
Confidence 466888999999999999999999999999998 5321
Q ss_pred cccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Q psy8267 235 SQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR------REVAIIAKALVRLLRSSREVQTVVLTTIASL 308 (645)
Q Consensus 235 ~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~------~~~~~~~~~L~~lL~s~~niryv~L~~l~~l 308 (645)
.++..+++.+.|.++|.|++|++.+.++++++..- ....++..+|+.++++.++++|++|+++..+
T Consensus 235 --------~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~li 306 (734)
T KOG1061|consen 235 --------REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLI 306 (734)
T ss_pred --------hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHH
Confidence 13566889999999999999999999999876431 2356788899999998889999999999999
Q ss_pred HhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHH
Q psy8267 309 AVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTD 388 (645)
Q Consensus 309 ~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~ 388 (645)
.+++|++|..+++.|||+++||+|||..|||+++.+++.+|+..|+.||.+|..+.|.+|++++|++||+||.|++++ .
T Consensus 307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~ 385 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-N 385 (734)
T ss_pred HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred HHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHHHH
Q psy8267 389 TCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRK 468 (645)
Q Consensus 389 ~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr~ 468 (645)
.|++.++++++.+.+|+++|++.+|++++|.+|...+.++..+++.++++++|+||++++|++|||++.+++ ++++|+.
T Consensus 386 ~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-a~elL~~ 464 (734)
T KOG1061|consen 386 DCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-ALELLES 464 (734)
T ss_pred hhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHhhcCCchHHHHHHHHhhhh-------------------------------hcccCCC-CCC-------CCCC--CcH
Q psy8267 469 AAITFVNEEDIVKLQVLNLAPV-------------------------------EAAGITT-LPP-------AFTS--PRY 507 (645)
Q Consensus 469 l~~~f~~e~~~vk~~iL~~~~~-------------------------------~a~~y~~-l~~-------~v~~--p~~ 507 (645)
|.++|.+|+.+||+++||++++ |+--||+ |+. .+++ |.-
T Consensus 465 f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~~~~a~~v~~~~kP~i 544 (734)
T KOG1061|consen 465 FLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSEDPLIAKDVVLAEKPLI 544 (734)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhcCHHHHHHHHhcCCCcc
Confidence 9999999999999999999992 4444555 222 1222 331
Q ss_pred --------HHHHHHHhCCCCcceeeEeecccccc
Q psy8267 508 --------TEVLNKIGGGRGMLSALASFSRAPCL 533 (645)
Q Consensus 508 --------~~ll~~~~~~~~~l~~~~~~~~~~~~ 533 (645)
.++++++.-..|+++..|+-+...+.
T Consensus 545 s~~~~~~~p~~le~l~~~i~tlssVY~Kp~~~f~ 578 (734)
T KOG1061|consen 545 SEETDSLDPTLLEELLCDIGTLSSVYHKPPSAFV 578 (734)
T ss_pred ccCCCCCCchHHHHHHHhhccccceeecChHHhc
Confidence 67788887777888899998887664
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=3.3e-72 Score=633.03 Aligned_cols=450 Identities=35% Similarity=0.541 Sum_probs=410.3
Q ss_pred hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267 2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS 81 (645)
Q Consensus 2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~ 81 (645)
||+|+++++++|+|++++|++|+++++|+|+++||+||+|++.++++++|+++|++|+++|||+|+||++||+|||++|+
T Consensus 26 ~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~ 105 (526)
T PF01602_consen 26 ALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSN 105 (526)
T ss_dssp HHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHH-HHHHHHHhhcCCChhHHHHHHHHHHHH-Chhhh
Q psy8267 82 IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE-LVLVIEKLLQDKTTLVVGSAVMAFEEV-CPERI 159 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~-~~~~l~~lL~D~~~~V~~sav~~l~ei-~~~~~ 159 (645)
++++++++.+.+.|.+++.|++|||||+|++|+.|+|+.+|+.++. |.+.+.++|.|+|++|+.+|+.++.++ ++++.
T Consensus 106 i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 106 IRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp H-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHH
T ss_pred hcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccCcch
Confidence 9999999999999999999999999999999999999999999877 899999999999999999999999999 76665
Q ss_pred --hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccccc
Q psy8267 160 --DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQV 237 (645)
Q Consensus 160 --~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~ 237 (645)
.++++.+++|++.+..++||+|++++++|.+|++. ...
T Consensus 186 ~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~------~~~---------------------------------- 225 (526)
T PF01602_consen 186 YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM------EPE---------------------------------- 225 (526)
T ss_dssp HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS------SHH----------------------------------
T ss_pred hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC------Chh----------------------------------
Confidence 78899999999999999999999999999988732 100
Q ss_pred ccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHH-HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhc-cc
Q psy8267 238 STELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRRE-VAIIAKALVRLLR-SSREVQTVVLTTIASLAVKR-RA 314 (645)
Q Consensus 238 ~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~-~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~-p~ 314 (645)
+++...+++.+.+++++.+++|++||+++++++.+... +..++++|++|++ +++|+||++|+++..++..+ +.
T Consensus 226 ----~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~ 301 (526)
T PF01602_consen 226 ----DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA 301 (526)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH
T ss_pred ----hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh
Confidence 00013577888888999999999999999999988765 6789999999996 77899999999999999998 55
Q ss_pred chhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhccccHHHHHHH
Q psy8267 315 LFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISS-VDKAFVAATVQAIGKCAANIAQVTDTCLTG 393 (645)
Q Consensus 315 ~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~-~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ 393 (645)
++..+...|+++.+||.+||++||++|+.++|++|++.|++||.+|+++ .|.+++++++++|+.+|+++++..+||+++
T Consensus 302 v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~ 381 (526)
T PF01602_consen 302 VFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDT 381 (526)
T ss_dssp HGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHH
T ss_pred hhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHH
Confidence 6666776666788999999999999999999999999999999999955 499999999999999999999999999999
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCC--chHHHHHHHHH
Q psy8267 394 LVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPA--LGPDVLRKAAI 471 (645)
Q Consensus 394 ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~--~~~diLr~l~~ 471 (645)
+++++..+++++..++|.+++++++++|+.+++++..+++.++++.+++++++++|++||||+..++ .++++++.+++
T Consensus 382 l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~ 461 (526)
T PF01602_consen 382 LLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIE 461 (526)
T ss_dssp HHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHH
T ss_pred HHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred hhcCCchHHHHHHHHhhhhhcccC
Q psy8267 472 TFVNEEDIVKLQVLNLAPVEAAGI 495 (645)
Q Consensus 472 ~f~~e~~~vk~~iL~~~~~~a~~y 495 (645)
+|..+++.||.+++++++|-...+
T Consensus 462 ~~~~~~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 462 NFIEESPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHS
T ss_pred hhccccHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999754443
No 6
>KOG1062|consensus
Probab=100.00 E-value=8.9e-70 Score=593.30 Aligned_cols=447 Identities=19% Similarity=0.243 Sum_probs=387.4
Q ss_pred HHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC
Q psy8267 3 KGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI 82 (645)
Q Consensus 3 lkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I 82 (645)
+-|++|+.|+|||.+|+.++++|+++|++|.+||+|||++..+.+|.+|+.+|++|+++|||+++|.++.|+||.++|+|
T Consensus 55 iaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i 134 (866)
T KOG1062|consen 55 IAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNI 134 (866)
T ss_pred HHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhcc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChh---hh
Q psy8267 83 RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE---RI 159 (645)
Q Consensus 83 ~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~---~~ 159 (645)
..+||++.+.+.|.+++.+++|||||||++|..|+.++.|++++.|.+.-.++|.|+++||+.+++..+.++|.. ..
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999955 44
Q ss_pred hhhHHHHHHHHHHhcC---------------CCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCC
Q psy8267 160 DMIHKSYRKLCNLLVD---------------VDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDD 224 (645)
Q Consensus 160 ~li~~~~~kL~~~L~~---------------~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~ 224 (645)
+.+......++.+|.+ +|||+|++||++|.-+++. ||.. |+.|.++
T Consensus 215 ~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~---d~da----Sd~M~Di------------ 275 (866)
T KOG1062|consen 215 SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN---DADA----SDLMNDI------------ 275 (866)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC---CccH----HHHHHHH------------
Confidence 4444455555555543 6999999999999999864 3321 2222222
Q ss_pred cccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHH-HHHHHHHHHh-CCChhHHHHHH
Q psy8267 225 ETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVA-IIAKALVRLL-RSSREVQTVVL 302 (645)
Q Consensus 225 ~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~-~~~~~L~~lL-~s~~niryv~L 302 (645)
+..+.+++.. -++.+.|++|||+++|+.+.+.+.++ .+++.|++|| +++.|+||++|
T Consensus 276 --------------------Laqvatntds-skN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 276 --------------------LAQVATNTDS-SKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred --------------------HHHHHhcccc-cccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 2334444432 24456799999999999998877766 4779999999 58899999999
Q ss_pred HHHHHHHhhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy8267 303 TTIASLAVKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAA 381 (645)
Q Consensus 303 ~~l~~l~~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~ 381 (645)
..|.+.++..|+.+++|...+. |+.|.|.+||+++||++|.|+|++|+..+++||++|+...|++|+.+++.+|..+|+
T Consensus 335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcC-CcchHHHHHHHHHhhc-----cCChHHHHHHHHHHHhccc
Q psy8267 382 NIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQ-PEAYTDIIRHMVRLSD-----SITVPTARAAILWLLGEYS 455 (645)
Q Consensus 382 k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~-p~~~~~~i~~L~~~l~-----~i~~~~ak~~~iwilGEy~ 455 (645)
+|++...|++|++++.++.+|++|.+++|..+.+++.+- ++.|++++.++...+. .+.++....+++|+|||||
T Consensus 415 kfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 415 KFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred hcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhh
Confidence 999999999999999999999999999999998898887 8999999999877653 2444444566799999999
Q ss_pred ccCCC---------c-hHHHHHHHHHhhc--CCchHHHHHHHHhhh
Q psy8267 456 HLVPA---------L-GPDVLRKAAITFV--NEEDIVKLQVLNLAP 489 (645)
Q Consensus 456 ~~i~~---------~-~~diLr~l~~~f~--~e~~~vk~~iL~~~~ 489 (645)
++.-+ + ..|++..+.+-+. ..+..+|.++|+++.
T Consensus 495 dlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~ 540 (866)
T KOG1062|consen 495 DLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALL 540 (866)
T ss_pred HHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 76543 1 2455555544333 244899999999998
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=4e-57 Score=505.62 Aligned_cols=440 Identities=32% Similarity=0.480 Sum_probs=381.4
Q ss_pred hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267 2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS 81 (645)
Q Consensus 2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~ 81 (645)
||||+|+.|+.|+|+|.+||+|+|++.+.|.++|||+|+||.+|++-+|++++|++|++|||++|+||++||+|||+||.
T Consensus 39 AmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~ 118 (757)
T COG5096 39 AMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSL 118 (757)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHH--HHHHHHHhhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 82 IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE--LVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~--~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
++.++++++++++|++++.|++|||||+||+|+.|+|+.+|+...+ ..+.+..++.|.||.|+.+|+.++.+++|+
T Consensus 119 l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e-- 196 (757)
T COG5096 119 LRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE-- 196 (757)
T ss_pred cChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh--
Confidence 9999999999999999999999999999999999999999998743 688888899999999999999999999998
Q ss_pred hhhHHHHHHHHHHhcCCC--------chhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccc
Q psy8267 160 DMIHKSYRKLCNLLVDVD--------EWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTK 231 (645)
Q Consensus 160 ~li~~~~~kL~~~L~~~~--------~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~ 231 (645)
..|+.+...+..+.+.+ +|.+..+++.|..+. |...
T Consensus 197 -~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~------~~~~----------------------------- 240 (757)
T COG5096 197 -LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERV------PTTP----------------------------- 240 (757)
T ss_pred -hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccC------CCCC-----------------------------
Confidence 34555556666665533 777777777776655 3221
Q ss_pred ccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHhCCC-hhHHHHHHHHHH
Q psy8267 232 NETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR----REVAIIAKALVRLLRSS-REVQTVVLTTIA 306 (645)
Q Consensus 232 ~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~----~~~~~~~~~L~~lL~s~-~niryv~L~~l~ 306 (645)
| +...+.+++.+.+++.|++|+..+++.++.+.+. .......++++.++.++ ..++|+......
T Consensus 241 ----------~-s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~ 309 (757)
T COG5096 241 ----------D-SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQ 309 (757)
T ss_pred ----------C-cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhH
Confidence 1 2345677778889999999999999988876532 23445668888888765 789999988888
Q ss_pred HHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhhcc
Q psy8267 307 SLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISS--VDKAFVAATVQAIGKCAANIA 384 (645)
Q Consensus 307 ~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~--~d~~~~~~~i~~I~~la~k~~ 384 (645)
.+....|..|..-.+.|++.++||.+++..|+++++.+++.+|...++.|+..|+.+ .|.+++++++++||.++.+.+
T Consensus 310 ~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~ 389 (757)
T COG5096 310 IDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAE 389 (757)
T ss_pred HHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhh
Confidence 888888998887777778999999999999999999999999999999999999998 899999999999999999999
Q ss_pred ccHHHHHHHHHHhhc---cCChhhHHHH-----HHHHH---HHhhcCCc----chHHHHHHHHHhhccC-ChHHHHHHH-
Q psy8267 385 QVTDTCLTGLVSLLS---YSDEAVVAES-----VVVIK---NLLQTQPE----AYTDIIRHMVRLSDSI-TVPTARAAI- 447 (645)
Q Consensus 385 ~~~~~~v~~ll~LL~---~~~~~v~~e~-----v~~i~---~il~~~p~----~~~~~i~~L~~~l~~i-~~~~ak~~~- 447 (645)
.....|++.++.++. ..++|+..|+ |.+++ .+++.+|+ .+...+..+.+.++.- ..|.++.+.
T Consensus 390 s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~ 469 (757)
T COG5096 390 SSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVTD 469 (757)
T ss_pred hhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhccccCcHHHHHHh
Confidence 999999999999999 8899999988 66665 55555554 4444444444444411 168888777
Q ss_pred ----HHHHhcccccCCCchHHHHHHHHHhhcCCchHHHHHHHHhhhh
Q psy8267 448 ----LWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPV 490 (645)
Q Consensus 448 ----iwilGEy~~~i~~~~~diLr~l~~~f~~e~~~vk~~iL~~~~~ 490 (645)
+|++|||++.++++.|++++.+..+|++|+.+||.+|++..++
T Consensus 470 ~~~~~wl~ge~~~~i~r~~~~~l~~~~~~~~~E~levq~~Il~~svk 516 (757)
T COG5096 470 KYLGAWLLGEFSDIIPRLEPELLRIAISNFVDETLEVQYTILMSSVK 516 (757)
T ss_pred hhhHHHhHHHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 9999999999999889999999999999999999999999994
No 8
>KOG1059|consensus
Probab=100.00 E-value=5.7e-51 Score=440.05 Aligned_cols=440 Identities=17% Similarity=0.184 Sum_probs=375.0
Q ss_pred hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267 2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS 81 (645)
Q Consensus 2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~ 81 (645)
|.-|+.|+.|.|.|++|.-++++..|+|+.+..||+||++.++-++.++|.++|.+|+++||++++|.+-.++||..||+
T Consensus 56 a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~ 135 (877)
T KOG1059|consen 56 AVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSC 135 (877)
T ss_pred HHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheeccccc
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhh-
Q psy8267 82 IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERID- 160 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~- 160 (645)
+.++++++.+.++|..++++..|||||+|++.++|+|-++||.+...++++.+-|+|+||+|+++|++.+||+...++.
T Consensus 136 fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 136 IVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred ccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 9999999999999999999999999999999999999999999998999999999999999999999999999855542
Q ss_pred --hhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccc
Q psy8267 161 --MIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVS 238 (645)
Q Consensus 161 --li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~ 238 (645)
-+.|.+.+|+. ...+.|.-+++|+++..+..- .|.. +
T Consensus 216 yL~LAP~ffkllt--tSsNNWmLIKiiKLF~aLtpl---EPRL------------g------------------------ 254 (877)
T KOG1059|consen 216 YLQLAPLFYKLLV--TSSNNWVLIKLLKLFAALTPL---EPRL------------G------------------------ 254 (877)
T ss_pred cccccHHHHHHHh--ccCCCeehHHHHHHHhhcccc---Cchh------------h------------------------
Confidence 24566666653 456999999999999988732 2322 1
Q ss_pred cccChhHHHHHHhhhhhhcCCCh-HHHHHHHHHHHhcC-----C--hHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHH
Q psy8267 239 TELDPDHRLLLKNAKPLLQSRNA-AVVMAVAQLFHHLA-----P--RREVAIIAKALVRLL-RSSREVQTVVLTTIASLA 309 (645)
Q Consensus 239 ~~~d~d~~~ll~~~~~ll~s~n~-aVv~ea~~~i~~l~-----~--~~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~ 309 (645)
..+++.+..++.+..+ +++|||+++++..+ + ...+.-++..|..|+ .+++|+||++|-+|.+++
T Consensus 255 -------KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 255 -------KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred -------hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 1234444445555555 89999999998641 1 123556778888888 599999999999999999
Q ss_pred hhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccH-HHHHHHHHHHHHHHhh--c--
Q psy8267 310 VKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDK-AFVAATVQAIGKCAAN--I-- 383 (645)
Q Consensus 310 ~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~-~~~~~~i~~I~~la~k--~-- 383 (645)
..||..++.|-..+. |+.|.|.+||.++||+||.|++++|+..|++.|+.|+..++. .||.+++..|-.++.+ |
T Consensus 328 ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ 407 (877)
T KOG1059|consen 328 KTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQY 407 (877)
T ss_pred hhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhh
Confidence 999999999988887 999999999999999999999999999999999999887765 8999998666554433 2
Q ss_pred cccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccC----------ChHHHHHHHHHHHhc
Q psy8267 384 AQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSI----------TVPTARAAILWLLGE 453 (645)
Q Consensus 384 ~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i----------~~~~ak~~~iwilGE 453 (645)
=.+.+||+.++++|....|..-...+-..+.++..+.|..+...+..+..++++. +-+++..+++||+||
T Consensus 408 ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GE 487 (877)
T KOG1059|consen 408 ITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGE 487 (877)
T ss_pred hhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHH
Confidence 3567999999999988776555566667788888899999999999999988743 246777788999999
Q ss_pred ccccCCCchHHHHHHHHHhh-cCCchHHHHHHHHhhhh
Q psy8267 454 YSHLVPALGPDVLRKAAITF-VNEEDIVKLQVLNLAPV 490 (645)
Q Consensus 454 y~~~i~~~~~diLr~l~~~f-~~e~~~vk~~iL~~~~~ 490 (645)
|++.+.+ +.+++..+.+.- .-.+.-++...+..++|
T Consensus 488 yse~ven-~~~~leamlrpr~~~lp~~iq~vyvqni~K 524 (877)
T KOG1059|consen 488 YSEFVEN-PNDTLEAMLRPRSDLLPGHIQAVYVQNIVK 524 (877)
T ss_pred HHHHhhC-HHHHHHHHhcCccccCchHHHHHHHHHHHH
Confidence 9999999 999999988654 35677788777776665
No 9
>KOG1058|consensus
Probab=100.00 E-value=7.2e-48 Score=417.18 Aligned_cols=406 Identities=22% Similarity=0.354 Sum_probs=356.8
Q ss_pred hHHHHHHHHhCCCCcccchHHHHHHhc-cCCchhHHHHHHHHHHhcccCch-----HHHHHHHHHHHHcCCCCHHHHHHH
Q psy8267 2 AKGTCCYMMAKGRDASDLFPAVVKNVV-SKNIEVKKLVYVYLARYAEEQQD-----LALLSISTFQRALKDPNQLIRASA 75 (645)
Q Consensus 2 alkkli~l~~~G~dvs~lf~~vvkli~-s~~~~~KkL~Yl~l~~~~~~~~d-----l~lL~iNsl~kDL~~~N~~iralA 75 (645)
|||++|++|..|++.+.++|++++.+- +.|+++|||.|+||...-+-++| .++|++|+++|||+|||+++|+..
T Consensus 40 amK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~T 119 (948)
T KOG1058|consen 40 AMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGST 119 (948)
T ss_pred HHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchh
Confidence 899999999999999999999999875 99999999999999999776654 489999999999999999999999
Q ss_pred HHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhh-cCCChhHHHHHHHHHHHH
Q psy8267 76 LRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLL-QDKTTLVVGSAVMAFEEV 154 (645)
Q Consensus 76 Lr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL-~D~~~~V~~sav~~l~ei 154 (645)
||++|.++.+|+.+.+++.|+.|+.|+++||||.|++|+..+|+....++++..+.+.+.| .+.||..-.+|...+..+
T Consensus 120 LRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~ 199 (948)
T KOG1058|consen 120 LRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTT 199 (948)
T ss_pred hhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999986666666666666654 688999999999999999
Q ss_pred ChhhhhhhHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccc
Q psy8267 155 CPERIDMIHKSYRKLCNLLV---DVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTK 231 (645)
Q Consensus 155 ~~~~~~li~~~~~kL~~~L~---~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~ 231 (645)
.|++. ..+|..... +.++-+|..+++++..-+.. .|..
T Consensus 200 D~ErA------l~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~---~p~~------------------------------ 240 (948)
T KOG1058|consen 200 DPERA------LNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA---NPAE------------------------------ 240 (948)
T ss_pred CHHHH------HHHHHhhHhhccCccHHHHHHHHHHHHHHHhc---CHHH------------------------------
Confidence 99876 223444444 45566799999999887743 2421
Q ss_pred ccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHhC--CChhHHHHHHHHHHHH
Q psy8267 232 NETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR-REVAIIAKALVRLLR--SSREVQTVVLTTIASL 308 (645)
Q Consensus 232 ~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~-~~~~~~~~~L~~lL~--s~~niryv~L~~l~~l 308 (645)
-...++.+..+|++.+++|.|||+-++..+++. ..++.+++.+++++- +++|++.++|+.|..+
T Consensus 241 -------------~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l 307 (948)
T KOG1058|consen 241 -------------KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSEL 307 (948)
T ss_pred -------------hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHH
Confidence 123567777889999999999999999888764 568889999999983 7899999999999999
Q ss_pred HhhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhc-c------ccHHHHHHHHHHHHHHH
Q psy8267 309 AVKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYIS-S------VDKAFVAATVQAIGKCA 380 (645)
Q Consensus 309 ~~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~-~------~d~~~~~~~i~~I~~la 380 (645)
...+.++++....+|. ++...|..||+++|++.+.|++..|++.|+.-|..-+. . ....||+.++++|..||
T Consensus 308 ~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca 387 (948)
T KOG1058|consen 308 KALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA 387 (948)
T ss_pred hhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Confidence 9888999999998887 78889999999999999999999999999987775332 1 23569999999999999
Q ss_pred hhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCC
Q psy8267 381 ANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVP 459 (645)
Q Consensus 381 ~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~ 459 (645)
.+||+.+...|..+++.+++.++.....++..++..++++|+++..++.+|.+-+..+..+.+..+++|++||||+-..
T Consensus 388 v~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 388 VKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999998888999999996443
No 10
>KOG1078|consensus
Probab=100.00 E-value=3e-31 Score=290.62 Aligned_cols=437 Identities=17% Similarity=0.259 Sum_probs=375.5
Q ss_pred hHHHHHHHHhCCC-----CcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy8267 2 AKGTCCYMMAKGR-----DASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASAL 76 (645)
Q Consensus 2 alkkli~l~~~G~-----dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralAL 76 (645)
++.|++|++.+|+ .+..+|+.+.|+++|+|..+||++|+++..+.....| .++++|++.||.+..++.+|+.||
T Consensus 43 ~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised-viivtsslmkD~t~~~d~yr~~Ai 121 (865)
T KOG1078|consen 43 ILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED-VIIVTSSLMKDMTGKEDLYRAAAI 121 (865)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh-hhhhhHHHHhhccCCCcchhHHHH
Confidence 5789999999997 5778999999999999999999999999999877666 788999999999999999999999
Q ss_pred HHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHCh
Q psy8267 77 RVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 77 r~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~ 156 (645)
|+|+.|-...|.+.....+++++.|++|.|+..|...-++++...++++..|...+..-..+.+.+|...|+.++..+..
T Consensus 122 R~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk 201 (865)
T KOG1078|consen 122 RALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRK 201 (865)
T ss_pred HHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999953
Q ss_pred -hhhhhhHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccc
Q psy8267 157 -ERIDMIHKSYRKLCNLLVD---VDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKN 232 (645)
Q Consensus 157 -~~~~li~~~~~kL~~~L~~---~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~ 232 (645)
++.. ..|+++.+.. -+|+.++.+++.-...... ++.
T Consensus 202 ~drla-----~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~---~~~-------------------------------- 241 (865)
T KOG1078|consen 202 NDRLA-----VSKLVQKFTRGSLKSPLAVCMLIRIASELLKE---NQQ-------------------------------- 241 (865)
T ss_pred hhHHH-----HHHHHHHHccccccchhHHHHHHHHHHHHhhh---ccc--------------------------------
Confidence 4442 2233333322 4788888888877765521 010
Q ss_pred cccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHH
Q psy8267 233 ETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR--REVAIIAKALVRLLRSS-REVQTVVLTTIASLA 309 (645)
Q Consensus 233 ~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~--~~~~~~~~~L~~lL~s~-~niryv~L~~l~~l~ 309 (645)
.+..+..+++ .++.|..-.|++||++.+.++... ..+..++..|.-|++++ +-+||.+.+.|.+++
T Consensus 242 --------~~s~~~~fl~---s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvA 310 (865)
T KOG1078|consen 242 --------ADSPLFPFLE---SCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVA 310 (865)
T ss_pred --------chhhHHHHHH---HHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 0112444554 567888999999999999987642 23445777788888755 689999999999999
Q ss_pred hhcccchhhhhceEEE-cCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHH
Q psy8267 310 VKRRALFVPYLKSFYV-RSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTD 388 (645)
Q Consensus 310 ~~~p~~~~~~~~~f~~-l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~ 388 (645)
..+|....-.....-- -.|...+|...|...|++-++++|++.+++..-.++.+.+.+|+.-.+++|..++.+||....
T Consensus 311 m~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~ 390 (865)
T KOG1078|consen 311 MKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHT 390 (865)
T ss_pred HhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHH
Confidence 9999876544444432 234458899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCChh-hHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHHH
Q psy8267 389 TCLTGLVSLLSYSDEA-VVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLR 467 (645)
Q Consensus 389 ~~v~~ll~LL~~~~~~-v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr 467 (645)
.++++|-.+|...|++ .....+.+|..++..+|+..+..+.+||++++++..+..-.-++.++|+-|...++ +..++|
T Consensus 391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~-Pskyir 469 (865)
T KOG1078|consen 391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPN-PSKYIR 469 (865)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCC-cchhhH
Confidence 9999999999887764 67788899999999999999999999999999998888777789999999999998 999999
Q ss_pred HHHHhhcCCchHHHHHHHHhhhhh
Q psy8267 468 KAAITFVNEEDIVKLQVLNLAPVE 491 (645)
Q Consensus 468 ~l~~~f~~e~~~vk~~iL~~~~~~ 491 (645)
..+++...|+..||...+++++|.
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKf 493 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKF 493 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999843
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.97 E-value=5.4e-29 Score=263.87 Aligned_cols=451 Identities=15% Similarity=0.142 Sum_probs=348.5
Q ss_pred hHHHHHHHHhCCCC-----cccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCH-HHHHHH
Q psy8267 2 AKGTCCYMMAKGRD-----ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ-LIRASA 75 (645)
Q Consensus 2 alkkli~l~~~G~d-----vs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~-~iralA 75 (645)
++-|+.+++..|+- +..+|+.+.|+++++|..+|+-+|+++..+..-..| .+|.+|++.||++..-| .++..|
T Consensus 44 lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted-vlm~tssiMkD~~~g~~~~~kp~A 122 (898)
T COG5240 44 LLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED-VLMGTSSIMKDLNGGVPDDVKPMA 122 (898)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh-hhHHHHHHHHhhccCCccccccHH
Confidence 46789999999984 577999999999999999999999999999887667 78999999999998877 999999
Q ss_pred HHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCC--ChhHHHHHHHHHHH
Q psy8267 76 LRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDK--TTLVVGSAVMAFEE 153 (645)
Q Consensus 76 Lr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~--~~~V~~sav~~l~e 153 (645)
+|.|-++-..+++......+..+..|+++-+|..|....+++|-.+-++...|.....+..-|- .|.--+ =.+
T Consensus 123 iRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~-----n~g 197 (898)
T COG5240 123 IRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHG-----NEG 197 (898)
T ss_pred HHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccC-----Ccc
Confidence 9999999999999999999999999999999999998899998888788888877666544330 000000 001
Q ss_pred HChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccc
Q psy8267 154 VCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNE 233 (645)
Q Consensus 154 i~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~ 233 (645)
.-|..-.+-.-|.-.|+-.++.-|..+|.++++.+.. |.. -+ +.++.+....+.
T Consensus 198 y~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~--------n~s-mk------nq~a~V~lvr~~----------- 251 (898)
T COG5240 198 YEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRG--------NAS-MK------NQLAGVLLVRAT----------- 251 (898)
T ss_pred cCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhc--------ccc-cc------cchhheehHHHH-----------
Confidence 1121111111123344444555565566665554432 110 00 001000000000
Q ss_pred cccccccc--ChhHHHHHH-hhhhhhcCCChHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHhCCC-hhHHHHHHHHH
Q psy8267 234 TSQVSTEL--DPDHRLLLK-NAKPLLQSRNAAVVMAVAQLFHHLAP----RREVAIIAKALVRLLRSS-REVQTVVLTTI 305 (645)
Q Consensus 234 ~~~~~~~~--d~d~~~ll~-~~~~ll~s~n~aVv~ea~~~i~~l~~----~~~~~~~~~~L~~lL~s~-~niryv~L~~l 305 (645)
.-.+ ++++...++ -+..++.+....|.+|++++++.++. ++.+...+..|..||.++ .-.||.+++.+
T Consensus 252 ----~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Ril 327 (898)
T COG5240 252 ----VELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRIL 327 (898)
T ss_pred ----HHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 0001 122222221 11345556668999999999987653 245678889999999765 58999999999
Q ss_pred HHHHhhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc
Q psy8267 306 ASLAVKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIA 384 (645)
Q Consensus 306 ~~l~~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~ 384 (645)
.+++..+|..+.-+.+.+- +-.|...+|..-|+..|.+-+|++|++.+++.+-.|+++....|+.-+|.++..++.+||
T Consensus 328 n~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp 407 (898)
T COG5240 328 NQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFP 407 (898)
T ss_pred HHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCc
Confidence 9999999986654444443 234556789999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhccCChh-hHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchH
Q psy8267 385 QVTDTCLTGLVSLLSYSDEA-VVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGP 463 (645)
Q Consensus 385 ~~~~~~v~~ll~LL~~~~~~-v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~ 463 (645)
.....++++|...|...|++ .....+.+|.+++...|+.++.++..||+++++++.+++...++.++|+-|...++ |.
T Consensus 408 ~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~-P~ 486 (898)
T COG5240 408 SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKT-PG 486 (898)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC-cc
Confidence 99999999999988777665 78888999999999999999999999999999999999988899999999999999 99
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHhhh
Q psy8267 464 DVLRKAAITFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 464 diLr~l~~~f~~e~~~vk~~iL~~~~ 489 (645)
.+.|.++++...|+..||...+.+..
T Consensus 487 ~yvrhIyNR~iLEN~ivRsaAv~aLs 512 (898)
T COG5240 487 KYVRHIYNRLILENNIVRSAAVQALS 512 (898)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999998888875
No 12
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=99.78 E-value=3.1e-19 Score=164.03 Aligned_cols=94 Identities=46% Similarity=0.802 Sum_probs=89.3
Q ss_pred CCCCcH-----HHHHHHHhCCCCcceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCC
Q psy8267 502 FTSPRY-----TEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPE 576 (645)
Q Consensus 502 v~~p~~-----~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (645)
+.+|.| +|||+++.|+ | |++.|||+|++++|+++|++|+|+|+|++++++++|+++.+ +++.|+++++|++
T Consensus 47 ~~~ps~v~~k~~eLL~~v~G~-G-L~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i~~k--~l~~g~~i~~F~~ 122 (145)
T PF14796_consen 47 VVSPSFVPPKKYELLNRVNGK-G-LSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHIGEK--KLPAGMRIHEFPE 122 (145)
T ss_pred ccCCcccCcceEEeeeccCCC-c-eeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEECCC--CCCCCcEeeccCc
Confidence 444666 8999999999 9 99999999999999999999999999999999999999988 8889999999999
Q ss_pred CcccCCCCceEEEEeEEecCCCC
Q psy8267 577 IASIDPGLAVEVSLGLNLNDSTQ 599 (645)
Q Consensus 577 ~~~l~~~~~~~~~~~~~~~~~~~ 599 (645)
|+.|+||+++++.++|||+|+||
T Consensus 123 I~~L~pg~s~t~~lgIDF~DStQ 145 (145)
T PF14796_consen 123 IESLEPGASVTVSLGIDFNDSTQ 145 (145)
T ss_pred ccccCCCCeEEEEEEEecccCCC
Confidence 99999999999999999999987
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.54 E-value=2.8e-12 Score=145.12 Aligned_cols=381 Identities=19% Similarity=0.271 Sum_probs=212.6
Q ss_pred ccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHH-HHHHHHHHcCCCCHHHHHHHHHHHhCC-Ccc----ccHHH
Q psy8267 17 SDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALL-SISTFQRALKDPNQLIRASALRVLSSI-RVP----MIIPI 90 (645)
Q Consensus 17 s~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL-~iNsl~kDL~~~N~~iralALr~ls~I-~~~----ei~~~ 90 (645)
..+.+.|.+++.+++..+||-+.+++..+.+..||+.-- .+..+.+-|.|+|+.+++.|+.++..+ ..+ .+++.
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~ 192 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPK 192 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHH
Confidence 345666666666666667776666666666666665443 466666666666666666676666666 332 34555
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH--HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHH
Q psy8267 91 VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK--EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRK 168 (645)
Q Consensus 91 l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~--~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~k 168 (645)
+...+.+.+.+++|+++-+++..+.++.+..|+.. ..+++.+..+|.+.++.|+..|+.++..+.+... ++......
T Consensus 193 ~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-~~~~~~~~ 271 (526)
T PF01602_consen 193 LIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-LLQKAINP 271 (526)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-HHHHHHHH
T ss_pred HHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-HHHhhHHH
Confidence 55555555566677766666666666666555555 4566666666666666666666666666655333 33444555
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHH
Q psy8267 169 LCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLL 248 (645)
Q Consensus 169 L~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~l 248 (645)
|.+.|.+.++=.+...|+.|....+.. |. .+.+... .
T Consensus 272 L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~--------------------------------------~v~~~~~--~ 308 (526)
T PF01602_consen 272 LIKLLSSSDPNVRYIALDSLSQLAQSN---PP--------------------------------------AVFNQSL--I 308 (526)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHCCHC---HH--------------------------------------HHGTHHH--H
T ss_pred HHHHhhcccchhehhHHHHHHHhhccc---ch--------------------------------------hhhhhhh--h
Confidence 666666555546666666666554320 00 0001111 1
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CC-ChhHHHHHHHHHHHHHhhcccchhhhhceEE-E
Q psy8267 249 LKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RS-SREVQTVVLTTIASLAVKRRALFVPYLKSFY-V 325 (645)
Q Consensus 249 l~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s-~~niryv~L~~l~~l~~~~p~~~~~~~~~f~-~ 325 (645)
+ ..+..+.+..|...++.++..+....-+..+.+.|...+ .. ++.+|--++..|..++.++|...+.++..++ +
T Consensus 309 ~---~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~l 385 (526)
T PF01602_consen 309 L---FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKL 385 (526)
T ss_dssp H---HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHH
T ss_pred h---heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHh
Confidence 1 112235556666666666666666555666666666666 33 5566666666676666666665555555444 2
Q ss_pred cCCCChHHHHHHHHHHHHccC--cCCHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHhhcc
Q psy8267 326 RSSDPTHVKTLKLELLTTLAS--ETSIASILREFQTYISS-VDKAFVAATVQAIGKCAANIAQ--VTDTCLTGLVSLLSY 400 (645)
Q Consensus 326 l~~d~~~Ir~~kLdlL~~L~~--~~Nv~~Il~EL~~yl~~-~d~~~~~~~i~~I~~la~k~~~--~~~~~v~~ll~LL~~ 400 (645)
+.....++.......+..+.. ++.-+.++..|.+++.+ .++++++.++--||..+...+. ....++..+.+....
T Consensus 386 l~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~ 465 (526)
T PF01602_consen 386 LEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIE 465 (526)
T ss_dssp HHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTT
T ss_pred hhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhcc
Confidence 333333455555555554432 34455566666666655 4556666666666666666555 444555555555544
Q ss_pred CChhhHHHHHHHHHHHhhcCC--cchHHHHHHHHHhhc-cCChHHHH
Q psy8267 401 SDEAVVAESVVVIKNLLQTQP--EAYTDIIRHMVRLSD-SITVPTAR 444 (645)
Q Consensus 401 ~~~~v~~e~v~~i~~il~~~p--~~~~~~i~~L~~~l~-~i~~~~ak 444 (645)
..+.+...++..+.++..++| +.+..+...+..+.. +..+++++
T Consensus 466 ~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr 512 (526)
T PF01602_consen 466 ESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVR 512 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHH
Confidence 444555566666666666665 333344444444433 23445554
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.16 E-value=7.1e-09 Score=124.55 Aligned_cols=272 Identities=18% Similarity=0.168 Sum_probs=159.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKL 135 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~l 135 (645)
+++.|..-|.|+++.+|..|+..|+.++.++.++. +.+++.|+++.||..|+.++.++-...+. .+.+..+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~----L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~ 692 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPA----LVAALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDH 692 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHH----HHHHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHH
Confidence 34566677778888888888888887776654443 45666777888888777777766432221 1344566
Q ss_pred hcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCC
Q psy8267 136 LQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDG 215 (645)
Q Consensus 136 L~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~ 215 (645)
|+|+|+.|..+|+.++..+...... .++..|.+.+++.+...++.|.... ++
T Consensus 693 L~~~d~~VR~~A~~aL~~~~~~~~~-------~l~~~L~D~d~~VR~~Av~aL~~~~-----~~---------------- 744 (897)
T PRK13800 693 LGSPDPVVRAAALDVLRALRAGDAA-------LFAAALGDPDHRVRIEAVRALVSVD-----DV---------------- 744 (897)
T ss_pred hcCCCHHHHHHHHHHHHhhccCCHH-------HHHHHhcCCCHHHHHHHHHHHhccc-----Cc----------------
Confidence 7777777777777777665432221 2455667777777766666654321 00
Q ss_pred CCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CC
Q psy8267 216 EDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SS 294 (645)
Q Consensus 216 ~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~ 294 (645)
..+ ..++.+.++.|..+++..+.++.... ......|.+++. .+
T Consensus 745 ------------------------------~~l----~~~l~D~~~~VR~~aa~aL~~~~~~~--~~~~~~L~~ll~D~d 788 (897)
T PRK13800 745 ------------------------------ESV----AGAATDENREVRIAVAKGLATLGAGG--APAGDAVRALTGDPD 788 (897)
T ss_pred ------------------------------HHH----HHHhcCCCHHHHHHHHHHHHHhcccc--chhHHHHHHHhcCCC
Confidence 001 23456677777777777776665421 112355666664 56
Q ss_pred hhHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHH
Q psy8267 295 REVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQ 374 (645)
Q Consensus 295 ~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~ 374 (645)
+++|..++..|..+... +..... +. -.+.|++..||..+++.|-.+.++. .+.-|...+.+.|.++|.+++.
T Consensus 789 ~~VR~aA~~aLg~~g~~-~~~~~~-l~--~aL~d~d~~VR~~Aa~aL~~l~~~~----a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 789 PLVRAAALAALAELGCP-PDDVAA-AT--AALRASAWQVRQGAARALAGAAADV----AVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred HHHHHHHHHHHHhcCCc-chhHHH-HH--HHhcCCChHHHHHHHHHHHhccccc----hHHHHHHHhcCCCHHHHHHHHH
Confidence 77777777777666431 111111 10 1245556677777777777776544 3344444556777777777777
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHH
Q psy8267 375 AIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413 (645)
Q Consensus 375 ~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i 413 (645)
+++.+. ......+.|...++..+..|..+++..+
T Consensus 861 aL~~~~-----~~~~a~~~L~~al~D~d~~Vr~~A~~aL 894 (897)
T PRK13800 861 ALTRWP-----GDPAARDALTTALTDSDADVRAYARRAL 894 (897)
T ss_pred HHhccC-----CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 777641 1123344555666666555666555444
No 15
>PTZ00429 beta-adaptin; Provisional
Probab=99.14 E-value=6.5e-08 Score=112.38 Aligned_cols=417 Identities=12% Similarity=0.108 Sum_probs=270.9
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC--ccccHHHHHHHHHhh
Q psy8267 21 PAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIR--VPMIIPIVMLAIKDS 98 (645)
Q Consensus 21 ~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~--~~ei~~~l~~~I~~~ 98 (645)
.++-+.+.+++...||-+---+..+.-...|..-+-. .+.|-+.++|..+|-+..-.+.+.. .++.+-..+..++|-
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~-dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KD 113 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFV-DVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQD 113 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHH-HHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHH
Confidence 4566777788776666654322222222234333322 2234667889999887766666554 367777788999999
Q ss_pred cCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhH--HHHHHHHHHhcCC
Q psy8267 99 SLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIH--KSYRKLCNLLVDV 176 (645)
Q Consensus 99 l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~--~~~~kL~~~L~~~ 176 (645)
+.|++|+||--|+-++.++ ..|+..+.+.+.+.++|.|++|.|..+|+.++..+....++++. +...+|.+.|.|.
T Consensus 114 l~d~Np~IRaLALRtLs~I--r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~ 191 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMCI--RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDN 191 (746)
T ss_pred cCCCCHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCC
Confidence 9999999999999998887 57888899999999999999999999999998888765555543 4567888888999
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhh
Q psy8267 177 DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLL 256 (645)
Q Consensus 177 ~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll 256 (645)
+|-.+...+.+|...... +|.. ++.. +..+..+...+
T Consensus 192 dp~Vv~nAl~aL~eI~~~---~~~~---------------------------------------l~l~-~~~~~~Ll~~L 228 (746)
T PTZ00429 192 NPVVASNAAAIVCEVNDY---GSEK---------------------------------------IESS-NEWVNRLVYHL 228 (746)
T ss_pred CccHHHHHHHHHHHHHHh---Cchh---------------------------------------hHHH-HHHHHHHHHHh
Confidence 999999999999887632 1200 1122 22333333344
Q ss_pred cCCChHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhh-cccchhhhh----ce-EEEcC
Q psy8267 257 QSRNAAVVMAVAQLFHHLAPR--REVAIIAKALVRLLR-SSREVQTVVLTTIASLAVK-RRALFVPYL----KS-FYVRS 327 (645)
Q Consensus 257 ~s~n~aVv~ea~~~i~~l~~~--~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~-~p~~~~~~~----~~-f~~l~ 327 (645)
...|.=-.....+++....|. .+...+...+...|+ +++-|-+-+.+.+..+... .|+...... .. +++.
T Consensus 229 ~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~- 307 (746)
T PTZ00429 229 PECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS- 307 (746)
T ss_pred hcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-
Confidence 445553333444555554443 334556677777775 6677777777777776543 234433322 11 2233
Q ss_pred CCChHHHHHHHHHHHHccCcCCHHHHHHHHHH-hhccccHH-HHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhh
Q psy8267 328 SDPTHVKTLKLELLTTLASETSIASILREFQT-YISSVDKA-FVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAV 405 (645)
Q Consensus 328 ~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~-yl~~~d~~-~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v 405 (645)
+.+..+|-.+|+-+..++... -..+..++.. |+...|+. ++...+.-+-.+| -+...+..++-|.+..+..+..+
T Consensus 308 ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La--ne~Nv~~IL~EL~eYa~d~D~ef 384 (746)
T PTZ00429 308 RRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV--TPSVAPEILKELAEYASGVDMVF 384 (746)
T ss_pred CCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc--CcccHHHHHHHHHHHhhcCCHHH
Confidence 344568888887776666533 2333344433 35555654 4555555555555 34556677777777777777789
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCCh--HHHHHHHHHHHhcccccCCCchHHHHHHHHHhh---cCCchHH
Q psy8267 406 VAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITV--PTARAAILWLLGEYSHLVPALGPDVLRKAAITF---VNEEDIV 480 (645)
Q Consensus 406 ~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~--~~ak~~~iwilGEy~~~i~~~~~diLr~l~~~f---~~e~~~v 480 (645)
+.+++..|..+..++|+.....+..|+++++.-.+ .++..++--++-.|. + . .++..+++.+ .-.+++.
T Consensus 385 ~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP----~-~-~il~~L~~~~~~~~i~e~~A 458 (746)
T PTZ00429 385 VVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYP----E-L-LMLDTLVTDYGADEVVEEEA 458 (746)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCc----c-H-HHHHHHHHhhcccccccHHH
Confidence 99999999999999999999999999999875221 223333333333333 2 1 2456666655 2357889
Q ss_pred HHHHHHhhhhhcc
Q psy8267 481 KLQVLNLAPVEAA 493 (645)
Q Consensus 481 k~~iL~~~~~~a~ 493 (645)
|..++....+.+.
T Consensus 459 KaaiiWILGEy~~ 471 (746)
T PTZ00429 459 KVSLLWMLGEYCD 471 (746)
T ss_pred HHHHHHHHHhhHh
Confidence 9999999887643
No 16
>PRK09687 putative lyase; Provisional
Probab=99.12 E-value=9.2e-09 Score=107.08 Aligned_cols=252 Identities=17% Similarity=0.224 Sum_probs=163.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q psy8267 55 LSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEK 134 (645)
Q Consensus 55 L~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~ 134 (645)
+.++.+.+-|.|+|..+|..|+.+|+.++.+++.+.+ .+++.|++|.||+.|+.++..+-.... ..+...+.|..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l----~~ll~~~d~~vR~~A~~aLg~lg~~~~-~~~~a~~~L~~ 97 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLA----IELCSSKNPIERDIGADILSQLGMAKR-CQDNVFNILNN 97 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHH----HHHHhCCCHHHHHHHHHHHHhcCCCcc-chHHHHHHHHH
Confidence 4556677888999999999999999999987765554 667899999999999999998753221 12344566666
Q ss_pred h-hcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCC
Q psy8267 135 L-LQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDL 213 (645)
Q Consensus 135 l-L~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l 213 (645)
+ ++|+++.|..+|+.++..+++........
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~------------------------------------------------- 128 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPLYSPK------------------------------------------------- 128 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcccccccccchH-------------------------------------------------
Confidence 5 78999999999999988776432210000
Q ss_pred CCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-
Q psy8267 214 DGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR- 292 (645)
Q Consensus 214 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~- 292 (645)
.+..+...+.+.+.-|.+.++..+..+... .++..|+.+|.
T Consensus 129 ----------------------------------a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~----~ai~~L~~~L~d 170 (280)
T PRK09687 129 ----------------------------------IVEQSQITAFDKSTNVRFAVAFALSVINDE----AAIPLLINLLKD 170 (280)
T ss_pred ----------------------------------HHHHHHHHhhCCCHHHHHHHHHHHhccCCH----HHHHHHHHHhcC
Confidence 011112233445666777777777666542 46677777775
Q ss_pred CChhHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHH
Q psy8267 293 SSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAAT 372 (645)
Q Consensus 293 s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~ 372 (645)
.++.+|+-+..+|..+....|.....-.. .+.|++..||..+..-|-.+.++.=+..+++ ++.+.+ ++..+
T Consensus 171 ~~~~VR~~A~~aLg~~~~~~~~~~~~L~~---~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~----~L~~~~--~~~~a 241 (280)
T PRK09687 171 PNGDVRNWAAFALNSNKYDNPDIREAFVA---MLQDKNEEIRIEAIIGLALRKDKRVLSVLIK----ELKKGT--VGDLI 241 (280)
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHH---HhcCCChHHHHHHHHHHHccCChhHHHHHHH----HHcCCc--hHHHH
Confidence 56788888888887773334444332111 2356667788888888888777654444444 444444 56677
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhc-cCChhhHHHHHHHH
Q psy8267 373 VQAIGKCAANIAQVTDTCLTGLVSLLS-YSDEAVVAESVVVI 413 (645)
Q Consensus 373 i~~I~~la~k~~~~~~~~v~~ll~LL~-~~~~~v~~e~v~~i 413 (645)
+.++|.+... ..+..|.+++. ..++++...++..+
T Consensus 242 ~~ALg~ig~~------~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 242 IEAAGELGDK------TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHhcCCH------hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 7777776642 35566666665 44455555544443
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.99 E-value=1.7e-07 Score=112.87 Aligned_cols=285 Identities=17% Similarity=0.139 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHH
Q psy8267 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVM 149 (645)
Q Consensus 70 ~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~ 149 (645)
..|-+|+..| ..+ ..+.+.+.|.|++|.||+.|+.++.++. .|+ .++.|..+|+|+++.|..+|+.
T Consensus 609 ~~~~~~~~~l---~~~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~--~~~----~~~~L~~aL~D~d~~VR~~Aa~ 674 (897)
T PRK13800 609 SPRILAVLAL---DAP-----SVAELAPYLADPDPGVRRTAVAVLTETT--PPG----FGPALVAALGDGAAAVRRAAAE 674 (897)
T ss_pred hHHHHHHHhc---cch-----hHHHHHHHhcCCCHHHHHHHHHHHhhhc--chh----HHHHHHHHHcCCCHHHHHHHHH
Confidence 4444666665 222 3345567889999999999999999874 333 4566778899999999999999
Q ss_pred HHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccc
Q psy8267 150 AFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRD 229 (645)
Q Consensus 150 ~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~ 229 (645)
++.++...... ...|...|.+.+|+.+...++.|.... +.
T Consensus 675 aL~~l~~~~~~-----~~~L~~~L~~~d~~VR~~A~~aL~~~~------~~----------------------------- 714 (897)
T PRK13800 675 GLRELVEVLPP-----APALRDHLGSPDPVVRAAALDVLRALR------AG----------------------------- 714 (897)
T ss_pred HHHHHHhccCc-----hHHHHHHhcCCCHHHHHHHHHHHHhhc------cC-----------------------------
Confidence 99887421110 123566778889999988888886532 10
Q ss_pred ccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Q psy8267 230 TKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTVVLTTIASL 308 (645)
Q Consensus 230 ~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l 308 (645)
+ ...++ ..+.+.++.|..+|++.+..+... ..|..++. .++++|..+...|..+
T Consensus 715 ------------~--~~~l~----~~L~D~d~~VR~~Av~aL~~~~~~-------~~l~~~l~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 715 ------------D--AALFA----AALGDPDHRVRIEAVRALVSVDDV-------ESVAGAATDENREVRIAVAKGLATL 769 (897)
T ss_pred ------------C--HHHHH----HHhcCCCHHHHHHHHHHHhcccCc-------HHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 0 11222 356788889999999888877543 23455664 6688999988888888
Q ss_pred HhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHH
Q psy8267 309 AVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTD 388 (645)
Q Consensus 309 ~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~ 388 (645)
....+..+.... -.+.|++..||..++.-|-.+.++..+ ...|...+.+.|..+|..++.+++.+.. .
T Consensus 770 ~~~~~~~~~~L~---~ll~D~d~~VR~aA~~aLg~~g~~~~~---~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------~ 837 (897)
T PRK13800 770 GAGGAPAGDAVR---ALTGDPDPLVRAAALAALAELGCPPDD---VAAATAALRASAWQVRQGAARALAGAAA------D 837 (897)
T ss_pred ccccchhHHHHH---HHhcCCCHHHHHHHHHHHHhcCCcchh---HHHHHHHhcCCChHHHHHHHHHHHhccc------c
Confidence 654442222211 134566688898888888888776433 3445566777888888888888876542 2
Q ss_pred HHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHH
Q psy8267 389 TCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLL 451 (645)
Q Consensus 389 ~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwil 451 (645)
..++.|+.+|++.+..|..+++..+..+ ...| .+...|.+.+++ .++.+++.+..-|
T Consensus 838 ~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~~~----~a~~~L~~al~D-~d~~Vr~~A~~aL 894 (897)
T PRK13800 838 VAVPALVEALTDPHLDVRKAAVLALTRW-PGDP----AARDALTTALTD-SDADVRAYARRAL 894 (897)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhcc-CCCH----HHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 3456677777777777777777666553 1112 233344444543 3455665555544
No 18
>KOG1058|consensus
Probab=98.93 E-value=6.6e-08 Score=107.55 Aligned_cols=321 Identities=19% Similarity=0.212 Sum_probs=206.4
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC-------hhhhhhhH
Q psy8267 91 VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC-------PERIDMIH 163 (645)
Q Consensus 91 l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~-------~~~~~li~ 163 (645)
+..++++-|.||+.|||-...--++|+ +.||+++.+++.+..+|+.+++.|..+|+.|+.+|. |+.+++++
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~ 177 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIE 177 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc--CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHH
Confidence 567899999999999999988888887 799999999999999999999999999998887665 55555553
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccCh
Q psy8267 164 KSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDP 243 (645)
Q Consensus 164 ~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~ 243 (645)
.. | +.+.||-..-..+=+|-.. ||.. .
T Consensus 178 ~f---L---~~e~DpsCkRNAFi~L~~~------D~Er----------------------------------A------- 204 (948)
T KOG1058|consen 178 SF---L---LTEQDPSCKRNAFLMLFTT------DPER----------------------------------A------- 204 (948)
T ss_pred HH---H---HhccCchhHHHHHHHHHhc------CHHH----------------------------------H-------
Confidence 32 1 1233443332222111110 1100 0
Q ss_pred hHHHHHHhhhhhhcCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhh
Q psy8267 244 DHRLLLKNAKPLLQSRN---AAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPY 319 (645)
Q Consensus 244 d~~~ll~~~~~ll~s~n---~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~ 319 (645)
+.-+.+ +..-..+-| ..|+.|-++=..+-.| ..-.+.+..+..||+ +++.++|=+--++..++. .|..+..-
T Consensus 205 -l~Yl~~-~idqi~~~~~~LqlViVE~Irkv~~~~p-~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~A 280 (948)
T KOG1058|consen 205 -LNYLLS-NIDQIPSFNDSLQLVIVELIRKVCLANP-AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKAA 280 (948)
T ss_pred -HHHHHh-hHhhccCccHHHHHHHHHHHHHHHhcCH-HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHHH
Confidence 000011 111112222 2566666665555333 344567788888885 678899887777766654 56655432
Q ss_pred hceEE-E-cCCCChHHHHHHHHHHHHccCcCCHHHHHHHHH----HhhccccHHHHHHHHHHHHHHHhhccccHHHHHHH
Q psy8267 320 LKSFY-V-RSSDPTHVKTLKLELLTTLASETSIASILREFQ----TYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTG 393 (645)
Q Consensus 320 ~~~f~-~-l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~----~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ 393 (645)
-.... | ....|-.+|..-||.|+.+. .+-+.|+.+|. ..+.+.|-++|++++.-.-.++.. ......+++
T Consensus 281 a~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss--rNvediv~~ 356 (948)
T KOG1058|consen 281 ASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS--RNVEDIVQF 356 (948)
T ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh--ccHHHHHHH
Confidence 22222 2 22334579999999999987 44455666554 466778999999988766555532 233344444
Q ss_pred HHHhh-ccC------ChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHH
Q psy8267 394 LVSLL-SYS------DEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVL 466 (645)
Q Consensus 394 ll~LL-~~~------~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diL 466 (645)
|-+=+ ... ++...+..+..+.-.-.++|+....++..+++++.+.+ +.+-..++-.+.|--+..|+....++
T Consensus 357 Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N-~~aas~vl~FvrE~iek~p~Lr~~ii 435 (948)
T KOG1058|consen 357 LKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSN-EAAASDVLMFVREAIEKFPNLRASII 435 (948)
T ss_pred HHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 43322 111 22356667777777778999999999999999997754 44444557788888888887666777
Q ss_pred HHHHHhhcC
Q psy8267 467 RKAAITFVN 475 (645)
Q Consensus 467 r~l~~~f~~ 475 (645)
..+.++|..
T Consensus 436 ~~l~~~~~~ 444 (948)
T KOG1058|consen 436 EKLLETFPQ 444 (948)
T ss_pred HHHHHhhhh
Confidence 777766653
No 19
>PRK09687 putative lyase; Provisional
Probab=98.92 E-value=3.8e-07 Score=95.05 Aligned_cols=249 Identities=18% Similarity=0.153 Sum_probs=169.0
Q ss_pred HHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCcccc-HHHHHHHHHhh-cC
Q psy8267 23 VVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMI-IPIVMLAIKDS-SL 100 (645)
Q Consensus 23 vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei-~~~l~~~I~~~-l~ 100 (645)
.++++.++|..++.-.--.|.... .++..-+ +.+-++|+|+.+|..|.++||.++.+.- .+...+.+... +.
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~--~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~ 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRG--GQDVFRL----AIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcC--cchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc
Confidence 456678888888887777776553 2443333 3445789999999999999999987542 23344555555 78
Q ss_pred CCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchh
Q psy8267 101 DMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWG 180 (645)
Q Consensus 101 d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~ 180 (645)
|+++.||+.|+.++..+....+...+...+.+..++.|+++.|..+|+.++.++.... .+.-|+..|.+.++|.
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~------ai~~L~~~L~d~~~~V 175 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA------AIPLLINLLKDPNGDV 175 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH------HHHHHHHHhcCCCHHH
Confidence 9999999999999999865443333456677788899999999999999998775322 2445788889988886
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCC
Q psy8267 181 QVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRN 260 (645)
Q Consensus 181 Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n 260 (645)
.......|.... +. ++ .....+...++..|
T Consensus 176 R~~A~~aLg~~~------~~-----------------------------------------~~---~~~~~L~~~L~D~~ 205 (280)
T PRK09687 176 RNWAAFALNSNK------YD-----------------------------------------NP---DIREAFVAMLQDKN 205 (280)
T ss_pred HHHHHHHHhcCC------CC-----------------------------------------CH---HHHHHHHHHhcCCC
Confidence 666665554331 10 01 12333346678889
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHH
Q psy8267 261 AAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLEL 340 (645)
Q Consensus 261 ~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdl 340 (645)
..|..+|+..+..+... .+++.|+..|.++ .+++-+..++..+.. |..+ +.+... ...++|..|++++.+.
T Consensus 206 ~~VR~~A~~aLg~~~~~----~av~~Li~~L~~~-~~~~~a~~ALg~ig~--~~a~-p~L~~l-~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 206 EEIRIEAIIGLALRKDK----RVLSVLIKELKKG-TVGDLIIEAAGELGD--KTLL-PVLDTL-LYKFDDNEIITKAIDK 276 (280)
T ss_pred hHHHHHHHHHHHccCCh----hHHHHHHHHHcCC-chHHHHHHHHHhcCC--HhHH-HHHHHH-HhhCCChhHHHHHHHH
Confidence 99999999988887763 5778888888643 377777777777764 3221 111111 1134567888888776
Q ss_pred HH
Q psy8267 341 LT 342 (645)
Q Consensus 341 L~ 342 (645)
|-
T Consensus 277 ~~ 278 (280)
T PRK09687 277 LK 278 (280)
T ss_pred Hh
Confidence 64
No 20
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.76 E-value=6.9e-08 Score=93.92 Aligned_cols=125 Identities=24% Similarity=0.264 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHh--CCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-HHHHHHHHHhhcCCChhHH
Q psy8267 68 NQLIRASALRVLS--SIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-EELVLVIEKLLQDKTTLVV 144 (645)
Q Consensus 68 N~~iralALr~ls--~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-~~~~~~l~~lL~D~~~~V~ 144 (645)
||.+|+.|+.++| .++.+.+++...+.+.+++.|++|.|||.|++++.++...+.--. ..+...+..+|.|+|+.|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 6899999999999 568999999999999999999999999999999999998776544 4555777789999999999
Q ss_pred HHHHHHHHHHChh-hhhhhHHHHHHHHHHhcCCCchhH---------HHHHHHHHHHH
Q psy8267 145 GSAVMAFEEVCPE-RIDMIHKSYRKLCNLLVDVDEWGQ---------VFILNMLTRYA 192 (645)
Q Consensus 145 ~sav~~l~ei~~~-~~~li~~~~~kL~~~L~~~~~W~Q---------v~iL~lL~~y~ 192 (645)
..|...|.++... .++.+..++..++..|.++.+|.. ..+++.|..+.
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHc
Confidence 9999999999865 566677777778888888776652 35666665554
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.71 E-value=0.00011 Score=92.37 Aligned_cols=406 Identities=15% Similarity=0.105 Sum_probs=239.9
Q ss_pred cchHHHHHHhccCCc---hhHHHHHHHHHHhcccCchHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHhCCCc--ccc
Q psy8267 18 DLFPAVVKNVVSKNI---EVKKLVYVYLARYAEEQQDLALL-----SISTFQRALKDPNQLIRASALRVLSSIRV--PMI 87 (645)
Q Consensus 18 ~lf~~vvkli~s~~~---~~KkL~Yl~l~~~~~~~~dl~lL-----~iNsl~kDL~~~N~~iralALr~ls~I~~--~ei 87 (645)
..-+..+.++.+.+. .+++..-.++..+...+++..-. .+-.+.+-|+++|+..+..|..++.++.. ++.
T Consensus 144 GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~ 223 (2102)
T PLN03200 144 GVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESS 223 (2102)
T ss_pred CChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHH
Confidence 345666777766532 23444444555555544433222 45567777788889888888777765531 223
Q ss_pred HHHH-----HHHHHhhcCC-CChHHHHHHHHHHHHHhhcCchhHH-----HHHHHHHHhhcCCC---------hhHHHHH
Q psy8267 88 IPIV-----MLAIKDSSLD-MSPYVRKTAAHAIPKLYSLDPEQKE-----ELVLVIEKLLQDKT---------TLVVGSA 147 (645)
Q Consensus 88 ~~~l-----~~~I~~~l~d-~~pyVRK~Aalal~kl~~~~p~~~~-----~~~~~l~~lL~D~~---------~~V~~sa 147 (645)
.+.+ ++.+.+++.+ .++-||..|+.|+..+-..+++... +-++.+.+++..++ ....-+|
T Consensus 224 ~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~A 303 (2102)
T PLN03200 224 ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENA 303 (2102)
T ss_pred HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHH
Confidence 3322 4566777764 5779999999999998887777532 34556666665433 3345688
Q ss_pred HHHHHHHChhhhhhhHHHHHHHHHHhcCC--------CchhHHHHH-------------------HHHHHHHhhhcCCCC
Q psy8267 148 VMAFEEVCPERIDMIHKSYRKLCNLLVDV--------DEWGQVFIL-------------------NMLTRYARTQFTDPN 200 (645)
Q Consensus 148 v~~l~ei~~~~~~li~~~~~kL~~~L~~~--------~~W~Qv~iL-------------------~lL~~y~r~~~~~P~ 200 (645)
+.++..+|-+...++ ..|.+.+..+ .-|.-..++ ..|..+++.. +|.
T Consensus 304 vwALsNIcgg~~~ll----~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k--~p~ 377 (2102)
T PLN03200 304 MGALANICGGMSALI----LYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPR--DTK 377 (2102)
T ss_pred HHHHHHHhCCchhhH----HHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCC--CCc
Confidence 888888886533221 1122222111 002111111 1222222210 010
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHH------HhhhhhhcCCChHHHHHHHHHHHhc
Q psy8267 201 LNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLL------KNAKPLLQSRNAAVVMAVAQLFHHL 274 (645)
Q Consensus 201 ~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll------~~~~~ll~s~n~aVv~ea~~~i~~l 274 (645)
...+.. .+.|+. -.-++.++.++ +.+..+++..+.-+.-.++..+.++
T Consensus 378 ~vqe~V---~eALas-----------------------l~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L 431 (2102)
T PLN03200 378 LVQERI---IEALAS-----------------------LYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSL 431 (2102)
T ss_pred hhHHHH---HHHHHH-----------------------hcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHH
Confidence 000000 000000 00011111111 2234567778888888888888776
Q ss_pred CCh-HH-HH-----HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhccc---c-hh-hhhceEE-EcCCCChHHHHHHHHH
Q psy8267 275 APR-RE-VA-----IIAKALVRLLR-SSREVQTVVLTTIASLAVKRRA---L-FV-PYLKSFY-VRSSDPTHVKTLKLEL 340 (645)
Q Consensus 275 ~~~-~~-~~-----~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~---~-~~-~~~~~f~-~l~~d~~~Ir~~kLdl 340 (645)
... .+ .. ..++.|++||. .+.++|..++..+..++..+++ . .+ .=+..+. ++.+.+..+|..+...
T Consensus 432 ~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawA 511 (2102)
T PLN03200 432 CCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATV 511 (2102)
T ss_pred hCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 532 22 21 25689999996 5679999999999888764442 1 11 1111222 4556677999999999
Q ss_pred HHHccC-cCCHHHHHH------HHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHH
Q psy8267 341 LTTLAS-ETSIASILR------EFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413 (645)
Q Consensus 341 L~~L~~-~~Nv~~Il~------EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i 413 (645)
|.+++. +.|++.++. -|.+.+.+.+...++.+..+|+.++..-. ...+..++.+|...+..+...++.++
T Consensus 512 L~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d---~~~I~~Lv~LLlsdd~~~~~~aL~vL 588 (2102)
T PLN03200 512 LWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD---AATISQLTALLLGDLPESKVHVLDVL 588 (2102)
T ss_pred HHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc---hhHHHHHHHHhcCCChhHHHHHHHHH
Confidence 999985 557777663 56778888899999999999999976422 22446678888877766666677777
Q ss_pred HHHhhcCCc---ch-----HHHHHHHHHhhccCChHHHHHHHHHHHhcccccCC
Q psy8267 414 KNLLQTQPE---AY-----TDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVP 459 (645)
Q Consensus 414 ~~il~~~p~---~~-----~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~ 459 (645)
..++..-.. .+ ...+..|.+++++- .+..+..++|+++.|+.--+
T Consensus 589 gnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~ 641 (2102)
T PLN03200 589 GHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQ 641 (2102)
T ss_pred HHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCh
Confidence 666552221 11 23678888888864 46677777899999986443
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.63 E-value=1.6e-05 Score=89.68 Aligned_cols=323 Identities=18% Similarity=0.252 Sum_probs=208.4
Q ss_pred ccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHhCCC-ccccHHH
Q psy8267 17 SDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALL-----SISTFQRALKDPNQLIRASALRVLSSIR-VPMIIPI 90 (645)
Q Consensus 17 s~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL-----~iNsl~kDL~~~N~~iralALr~ls~I~-~~ei~~~ 90 (645)
..+-+.+.+.+.+++..+|+++--.+.++++.+...+-+ +...+..-+.|+|..+...|.++|.++. .+...+.
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 344555667778999999999888888877654332111 2234556678999999999999999884 3444445
Q ss_pred H-----HHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH-----HHHHHHHHhhcCCChhHHHHHHHHHHHHCh--hh
Q psy8267 91 V-----MLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE-----ELVLVIEKLLQDKTTLVVGSAVMAFEEVCP--ER 158 (645)
Q Consensus 91 l-----~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~-----~~~~~l~~lL~D~~~~V~~sav~~l~ei~~--~~ 158 (645)
+ ...+.+++..+++.||-++...+.++.+.+|+..+ ++++.+.+.|+++|..|..+|+-.+.+++. +.
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 5 67788888888999999999999999999998642 478888888999999999999999999874 44
Q ss_pred hhhhHH--HHHHHHHHhcC--CCc-hhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccc
Q psy8267 159 IDMIHK--SYRKLCNLLVD--VDE-WGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNE 233 (645)
Q Consensus 159 ~~li~~--~~~kL~~~L~~--~~~-W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~ 233 (645)
..++.. .+++|++.+.+ .|| +.-+.+...+.-++.....+|.. .+
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~----------v~-------------------- 285 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQE----------VL-------------------- 285 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHH----------HH--------------------
Confidence 455433 57888888865 467 66666655554444322112321 00
Q ss_pred ccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChH------------HHHHHHHHHHHHhC-CChhHHHH
Q psy8267 234 TSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRR------------EVAIIAKALVRLLR-SSREVQTV 300 (645)
Q Consensus 234 ~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~------------~~~~~~~~L~~lL~-s~~niryv 300 (645)
. ....+++.+...+++.+......|+.++..++... .++.+.+....... ..+++|--
T Consensus 286 --------~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r 356 (503)
T PF10508_consen 286 --------E-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLR 356 (503)
T ss_pred --------H-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHH
Confidence 0 01234555556667777766666666665554321 22233344444443 45699999
Q ss_pred HHHHHHHHHhhccc-----c---hhhhhc---------eEEEcCCCC-hHHHHHHHHHHHHccCcCCHHHHH---HHHHH
Q psy8267 301 VLTTIASLAVKRRA-----L---FVPYLK---------SFYVRSSDP-THVKTLKLELLTTLASETSIASIL---REFQT 359 (645)
Q Consensus 301 ~L~~l~~l~~~~p~-----~---~~~~~~---------~f~~l~~d~-~~Ir~~kLdlL~~L~~~~Nv~~Il---~EL~~ 359 (645)
+|+++..+....++ + .+..+. .++-.-..| +.+|.-++.+|..||...-...-+ .++.+
T Consensus 357 ~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie 436 (503)
T PF10508_consen 357 ALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIE 436 (503)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHh
Confidence 99999998543221 1 111111 122122345 789999999999999876444433 46777
Q ss_pred hhcc----cc---HHHHHHHHHHHHH
Q psy8267 360 YISS----VD---KAFVAATVQAIGK 378 (645)
Q Consensus 360 yl~~----~d---~~~~~~~i~~I~~ 378 (645)
|+.+ .+ .+.|-+++++|..
T Consensus 437 ~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 437 YLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 8854 22 3455566666653
No 23
>KOG1059|consensus
Probab=98.59 E-value=4e-05 Score=85.64 Aligned_cols=276 Identities=14% Similarity=0.219 Sum_probs=186.5
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHH
Q psy8267 85 PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHK 164 (645)
Q Consensus 85 ~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~ 164 (645)
.++......-+++-+.+++-|=---|.-|+-++ ..|++..++.+.+..||+.+-|.|.--|+.++..++-..++.+.+
T Consensus 104 tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~f--vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~ 181 (877)
T KOG1059|consen 104 TDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCI--VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP 181 (877)
T ss_pred ccHHHHHHHHHHHHhccCccchhhheecccccc--cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh
Confidence 344555666777777777766555555555554 579999999999999999999999999999999999888888999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChh
Q psy8267 165 SYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPD 244 (645)
Q Consensus 165 ~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d 244 (645)
+|.||...|.++||=.|-....++..++|. +|...- -+.|.
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArK---nPknyL------------------------------------~LAP~ 222 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARK---NPQNYL------------------------------------QLAPL 222 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhh---CCcccc------------------------------------cccHH
Confidence 999999999999999999999999999987 575411 02333
Q ss_pred HHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChH--HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhhcccchhhhhce
Q psy8267 245 HRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRR--EVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKS 322 (645)
Q Consensus 245 ~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~--~~~~~~~~L~~lL~s~~niryv~L~~l~~l~~~~p~~~~~~~~~ 322 (645)
.-.++ ..++|.=++.-.+++|..+.|-+ .-+++..+|..++.+-. -.-+.-+++..++.. ++...
T Consensus 223 ffkll------ttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~-AmSLlYECvNTVVa~--s~s~g---- 289 (877)
T KOG1059|consen 223 FYKLL------VTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTV-AMSLLYECVNTVVAV--SMSSG---- 289 (877)
T ss_pred HHHHH------hccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhH-HHHHHHHHHHHheee--hhccC----
Confidence 33332 46788889999999999998732 24578888888885432 223344555555432 11111
Q ss_pred EEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCC
Q psy8267 323 FYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSD 402 (645)
Q Consensus 323 f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~ 402 (645)
.+|+..+ ++.-++.|-.++.+.|+.++--...+++.++...|+.....-+.+++.|++.+
T Consensus 290 ---~~d~~as-----------------iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD 349 (877)
T KOG1059|consen 290 ---MSDHSAS-----------------IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKD 349 (877)
T ss_pred ---CCCcHHH-----------------HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCC
Confidence 1122222 23345566666666777777666677777777777776777777777777766
Q ss_pred hhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhc
Q psy8267 403 EAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSD 436 (645)
Q Consensus 403 ~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~ 436 (645)
+.+.-.++.-+--++.. +--..|++.|+++++
T Consensus 350 ~SIRlrALdLl~gmVsk--kNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 350 ESIRLRALDLLYGMVSK--KNLMEIVKTLMKHVE 381 (877)
T ss_pred chhHHHHHHHHHHHhhh--hhHHHHHHHHHHHHH
Confidence 66655555555444421 222345555555543
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.50 E-value=6.6e-05 Score=94.43 Aligned_cols=377 Identities=16% Similarity=0.149 Sum_probs=256.1
Q ss_pred cCCCCHHHHHHHHHHHhCCCc--cccHHH-----HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHH
Q psy8267 64 LKDPNQLIRASALRVLSSIRV--PMIIPI-----VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLV 131 (645)
Q Consensus 64 L~~~N~~iralALr~ls~I~~--~ei~~~-----l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~ 131 (645)
|+..+..++.-|..++..+.. .+..+. .++.+.++|.+.++-+|+.|+.++..+-.-+++.. .+.++.
T Consensus 413 L~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 413 ITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred hccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 345668888888888766642 232222 35677888999999999999988888876666543 367899
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHChh--hh-hhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCC
Q psy8267 132 IEKLLQDKTTLVVGSAVMAFEEVCPE--RI-DMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDS 206 (645)
Q Consensus 132 l~~lL~D~~~~V~~sav~~l~ei~~~--~~-~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s 206 (645)
+.++|...++.+.-.|+.++..++-+ +. ..+ ++.+..|++.|.+.++=.|...+..|..+... . +
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~----~---d--- 562 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT----A---D--- 562 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc----c---c---
Confidence 99999999999999999999988842 22 233 24567789999888877788888888777632 1 0
Q ss_pred CCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhc---CChHH-H--
Q psy8267 207 SEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHL---APRRE-V-- 280 (645)
Q Consensus 207 ~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l---~~~~~-~-- 280 (645)
. ..++.+..++.+.++.+...+++.+.++ ....+ .
T Consensus 563 ------------------------------------~---~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 563 ------------------------------------A---ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred ------------------------------------h---hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 0 0123334556777776666666655443 32222 1
Q ss_pred ----HHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhh-----hhc-eEEEcCCCChHHHHHHHHHHHHccC---
Q psy8267 281 ----AIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVP-----YLK-SFYVRSSDPTHVKTLKLELLTTLAS--- 346 (645)
Q Consensus 281 ----~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~-----~~~-~f~~l~~d~~~Ir~~kLdlL~~L~~--- 346 (645)
....+.|..||. .++++|--+...|..+...+++..+. -+. .+..+.+.+..+++.+-.-|..+.+
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence 135688999996 56789999999999998777653221 111 1124455666799999888888774
Q ss_pred cCCHHHH-----HHHHHHhhccccHHHHHHHHHHHHHHHhhcccc----HHHHHHHHHHhhccCChhhHHHHHHHHHHHh
Q psy8267 347 ETSIASI-----LREFQTYISSVDKAFVAATVQAIGKCAANIAQV----TDTCLTGLVSLLSYSDEAVVAESVVVIKNLL 417 (645)
Q Consensus 347 ~~Nv~~I-----l~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~----~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il 417 (645)
+.|...+ +.=|.+.+++.|.+++..+..+++.++..-... ....+..|+++|+.+.+.....+...+.++.
T Consensus 684 ~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 684 ENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred HHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 4444433 345778888999999999999999998643222 1345788999999999989999999999999
Q ss_pred hcCCcc--------hHHHHHHHHHhhccCC-----hHHHHHHHHHHHh-cccccC-CC-c-----hHHHHHHHHHhhcCC
Q psy8267 418 QTQPEA--------YTDIIRHMVRLSDSIT-----VPTARAAILWLLG-EYSHLV-PA-L-----GPDVLRKAAITFVNE 476 (645)
Q Consensus 418 ~~~p~~--------~~~~i~~L~~~l~~i~-----~~~ak~~~iwilG-Ey~~~i-~~-~-----~~diLr~l~~~f~~e 476 (645)
+.+|.- +..++..|+++|...+ ..++.-++.|+.- .++... ++ . .|+=++.++.....+
T Consensus 764 ~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~ 843 (2102)
T PLN03200 764 KHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEG 843 (2102)
T ss_pred hCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcC
Confidence 988832 2345667788886542 3456667777775 222221 11 0 234466777777778
Q ss_pred chHHHHHHHHhhh
Q psy8267 477 EDIVKLQVLNLAP 489 (645)
Q Consensus 477 ~~~vk~~iL~~~~ 489 (645)
+|.++--.+....
T Consensus 844 ~p~~~~kai~il~ 856 (2102)
T PLN03200 844 HPLVQDKAIEILS 856 (2102)
T ss_pred ChHHHHHHHHHHH
Confidence 8888876665553
No 25
>KOG2023|consensus
Probab=98.42 E-value=8.6e-06 Score=90.09 Aligned_cols=321 Identities=18% Similarity=0.236 Sum_probs=196.6
Q ss_pred HHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCch----hHHHHHHHHHHhhcCCChhHHHHHH
Q psy8267 73 ASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE----QKEELVLVIEKLLQDKTTLVVGSAV 148 (645)
Q Consensus 73 alALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~----~~~~~~~~l~~lL~D~~~~V~~sav 148 (645)
|.||.+|+|+-..++.+.+++.+++.+.+....||-.+++|+.-+-.-+-+ ..+++++.+..+|+|+.|.|..-+.
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 678999999999999999999999999999999999999999887653322 2467899999999999999987443
Q ss_pred HHHHHH-----ChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q psy8267 149 MAFEEV-----CPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYD 223 (645)
Q Consensus 149 ~~l~ei-----~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~ 223 (645)
=.+... +..+-+++.+....|++.+.|.+-|.|-.....+..+... . .. .
T Consensus 456 WTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~----A------~~----e----------- 510 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE----A------GE----E----------- 510 (885)
T ss_pred eeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh----c------cc----h-----------
Confidence 333322 2233356677777888888999999999988888776521 0 00 0
Q ss_pred CcccccccccccccccccChhHHHHHHhh---hhhhcCCChHHHHHHHHHHH-----hcCChHHHHHHHHHHHH---HhC
Q psy8267 224 DETTRDTKNETSQVSTELDPDHRLLLKNA---KPLLQSRNAAVVMAVAQLFH-----HLAPRREVAIIAKALVR---LLR 292 (645)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~d~d~~~ll~~~---~~ll~s~n~aVv~ea~~~i~-----~l~~~~~~~~~~~~L~~---lL~ 292 (645)
+-|-+..+++.+ -..-|+.|--++|.|+.++- +++.+.++..+..+|+. +|+
T Consensus 511 -----------------LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ls 573 (885)
T KOG2023|consen 511 -----------------LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLS 573 (885)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcC
Confidence 011122233322 23347899999999998763 56666678888899886 454
Q ss_pred -CChhHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHH-------ccCcCCHHHHHHHHHHhhccc
Q psy8267 293 -SSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTT-------LASETSIASILREFQTYISSV 364 (645)
Q Consensus 293 -s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~-------L~~~~Nv~~Il~EL~~yl~~~ 364 (645)
++.++ +=-|+++..++..-..-|.|+.. | |=.+..+||.+ .-++..+ ...
T Consensus 574 d~DKdL-fPLLEClSsia~AL~~gF~P~~~--------~--Vy~Rc~~il~~t~q~~~~~~~~~~~-----------~~p 631 (885)
T KOG2023|consen 574 DSDKDL-FPLLECLSSIASALGVGFLPYAQ--------P--VYQRCFRILQKTLQLLAKVQQDPTV-----------EAP 631 (885)
T ss_pred cccchH-HHHHHHHHHHHHHHhccccccCH--------H--HHHHHHHHHHHHHHHHHhccCCccc-----------cCC
Confidence 45554 45788888888755555555432 2 33333333332 1111110 112
Q ss_pred cHH-------HHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchH----HHHHHHHH
Q psy8267 365 DKA-------FVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYT----DIIRHMVR 433 (645)
Q Consensus 365 d~~-------~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~----~~i~~L~~ 433 (645)
|.+ +..-+++.+|.-.+..-. .+..++.+++.+.+....|.+.+.-.+.++..-.++.-. ..+..+..
T Consensus 632 dkdfiI~sLDL~SGLaegLg~~ie~Lva-~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~ 710 (885)
T KOG2023|consen 632 DKDFIIVSLDLLSGLAEGLGSHIEPLVA-QSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGA 710 (885)
T ss_pred CcceEEEeHHHHhHHHHHhhhchHHHhh-hccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhh
Confidence 333 333333444332221100 122566667777776667777776667777654432211 11111221
Q ss_pred hhccCChHHHHHHHHHHHhcccccCC
Q psy8267 434 LSDSITVPTARAAILWLLGEYSHLVP 459 (645)
Q Consensus 434 ~l~~i~~~~ak~~~iwilGEy~~~i~ 459 (645)
.++.-.- .|..-++|-+||-+-...
T Consensus 711 Nl~~~~i-sv~nNA~WAiGeia~k~g 735 (885)
T KOG2023|consen 711 NLNPENI-SVCNNAIWAIGEIALKMG 735 (885)
T ss_pred cCChhhc-hHHHHHHHHHHHHHHHhc
Confidence 2221112 234445999999886544
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.41 E-value=0.00076 Score=76.30 Aligned_cols=381 Identities=18% Similarity=0.185 Sum_probs=213.2
Q ss_pred HHhccCCchhHHHHHHHHHHhccc-Cch-HHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccc-------cHHHHHHHH
Q psy8267 25 KNVVSKNIEVKKLVYVYLARYAEE-QQD-LALLSISTFQRALKDPNQLIRASALRVLSSIRVPM-------IIPIVMLAI 95 (645)
Q Consensus 25 kli~s~~~~~KkL~Yl~l~~~~~~-~~d-l~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~e-------i~~~l~~~I 95 (645)
.++.+++.+.--+.--.+.+++.. .++ +.-=....+++-|.++++.+|.+|++.++++.... .-..+++.|
T Consensus 45 ~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 45 DCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLI 124 (503)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHH
Confidence 334444433333333234444432 233 23345567889999999999999999998863211 113467788
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhhcCchh--H--HHHHHHHHHhhcCCChhHHHHHHHHHHHHCh---hhhhhhHH--HH
Q psy8267 96 KDSSLDMSPYVRKTAAHAIPKLYSLDPEQ--K--EELVLVIEKLLQDKTTLVVGSAVMAFEEVCP---ERIDMIHK--SY 166 (645)
Q Consensus 96 ~~~l~d~~pyVRK~Aalal~kl~~~~p~~--~--~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~---~~~~li~~--~~ 166 (645)
..|+.|++..|.+.|+-++.++.+..+.. + ++....+.+++...+..|..-+..++.+++. +..+.... .+
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll 204 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLL 204 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHH
Confidence 99999999999999999999998754433 1 2337788888888787788778888888763 33333332 57
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHH
Q psy8267 167 RKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHR 246 (645)
Q Consensus 167 ~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~ 246 (645)
.++++.|.+-|.-.|...+++|...+.. |... +|+...
T Consensus 205 ~~ll~eL~~dDiLvqlnalell~~La~~----~~g~-----------------------------------~yL~~~--- 242 (503)
T PF10508_consen 205 DLLLKELDSDDILVQLNALELLSELAET----PHGL-----------------------------------QYLEQQ--- 242 (503)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHcC----hhHH-----------------------------------HHHHhC---
Confidence 7888889998999999999999998842 2210 011010
Q ss_pred HHHHhhhhhhcC----C-ChH-HHHHHHHHHHhcC---ChHH---HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcc
Q psy8267 247 LLLKNAKPLLQS----R-NAA-VVMAVAQLFHHLA---PRRE---VAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRR 313 (645)
Q Consensus 247 ~ll~~~~~ll~s----~-n~a-Vv~ea~~~i~~l~---~~~~---~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p 313 (645)
.+++.+..++++ . ..+ .+...++.+.++. |..- ...+...+.+++ +.++..+-+|++++..++....
T Consensus 243 gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 243 GIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred CHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 011112222221 1 122 2233344444433 2211 223444445555 3678888999999888875322
Q ss_pred cchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccc-cHHHHHH
Q psy8267 314 ALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQ-VTDTCLT 392 (645)
Q Consensus 314 ~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~-~~~~~v~ 392 (645)
+ .++| .......++.+++....+..+...+++..++.+++.+-...++ ..+....
T Consensus 323 G-----------------------~~~L-~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~ 378 (503)
T PF10508_consen 323 G-----------------------KQLL-LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILS 378 (503)
T ss_pred H-----------------------HHHH-HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 1 0111 2233445566667777777777777777777777776433322 2222222
Q ss_pred HHHHhhccCChhhHHHHHHHHHHHhhc-CCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHHHHHHH
Q psy8267 393 GLVSLLSYSDEAVVAESVVVIKNLLQT-QPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAI 471 (645)
Q Consensus 393 ~ll~LL~~~~~~v~~e~v~~i~~il~~-~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr~l~~ 471 (645)
..-......++.-... .+..++++ +||+|-.+..-+..+... -|.+-+.+. .|.+++.+.+
T Consensus 379 ~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~~----------~Wg~~~i~~-----~~gfie~lld 440 (503)
T PF10508_consen 379 ITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAAQ----------PWGQREICS-----SPGFIEYLLD 440 (503)
T ss_pred HHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhcC----------HHHHHHHHh-----CccHHhhhcC
Confidence 2211122111111111 45555554 367776544443332222 366655443 4556666665
Q ss_pred hhcCCc---hHHHHHHHHhhh
Q psy8267 472 TFVNEE---DIVKLQVLNLAP 489 (645)
Q Consensus 472 ~f~~e~---~~vk~~iL~~~~ 489 (645)
+-.+.+ -+-|..++.+.+
T Consensus 441 r~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 441 RSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 555433 345556665554
No 27
>KOG2171|consensus
Probab=98.39 E-value=0.0023 Score=75.63 Aligned_cols=431 Identities=15% Similarity=0.147 Sum_probs=253.4
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHH---HHHhCCCccccHHHHHHHH
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASAL---RVLSSIRVPMIIPIVMLAI 95 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralAL---r~ls~I~~~ei~~~l~~~I 95 (645)
.|-..+.-+.|+|-+.+|=.==.+...+...+ ++....+-++ .+.||.+|.+|. |-+.+=.++.+....-..|
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-~l~~L~~i~~---~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-LLPALAHILA---TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-hHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 34455566667777777766666665555555 3332222222 578899999985 3333334444444444444
Q ss_pred H----hhcC-CCChHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHH
Q psy8267 96 K----DSSL-DMSPYVRKTAAHAIPKLYSLD-PEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKL 169 (645)
Q Consensus 96 ~----~~l~-d~~pyVRK~Aalal~kl~~~~-p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL 169 (645)
+ .++. -+.+-||||-+-.+.-+.+.. |+.-+++.+.+....++.|+.-.-+|+..|..+-....+-..+++.-+
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l 160 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDL 160 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHH
Confidence 3 3444 459999999999999999854 553466677777888899999888998888766432222222333333
Q ss_pred H----HHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhH
Q psy8267 170 C----NLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDH 245 (645)
Q Consensus 170 ~----~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~ 245 (645)
. +.+.+++.=..+.-++.+..|... .+. ++ + . ..+ ...-+
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~---~~~--~~---~---~-----------------------~~~--~~~ll 204 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEY---LEN--NK---S---E-----------------------VDK--FRDLL 204 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHH---hcc--ch---H---H-----------------------HHH--HHHHh
Confidence 3 344454333666677777777632 010 00 0 0 000 00011
Q ss_pred HHHHHhhhhhhcCCChH---HHHHHHHHHHhcCCh---HHHHHHHHHHHHHhC-C--ChhHHHHHHHHHHHHHhhcccch
Q psy8267 246 RLLLKNAKPLLQSRNAA---VVMAVAQLFHHLAPR---REVAIIAKALVRLLR-S--SREVQTVVLTTIASLAVKRRALF 316 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~a---Vv~ea~~~i~~l~~~---~~~~~~~~~L~~lL~-s--~~niryv~L~~l~~l~~~~p~~~ 316 (645)
-.+++.+...++..+.. -++++..-+....|+ ..+..+...-..... + ++.+|..+|+.|..++...|...
T Consensus 205 P~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~ 284 (1075)
T KOG2171|consen 205 PSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMC 284 (1075)
T ss_pred HHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHh
Confidence 12334444555555553 444554444433342 122223222222332 2 46899999999999887655432
Q ss_pred hhh---hceE-------EE-------------c----CCCChHHHHHHHHHHH-HccCcCCHHHHHHHHHHhhccccHHH
Q psy8267 317 VPY---LKSF-------YV-------------R----SSDPTHVKTLKLELLT-TLASETSIASILREFQTYISSVDKAF 368 (645)
Q Consensus 317 ~~~---~~~f-------~~-------------l----~~d~~~Ir~~kLdlL~-~L~~~~Nv~~Il~EL~~yl~~~d~~~ 368 (645)
..+ ...+ .+ . .++|..+...+||.|. .|.-+.=+..+++-+..++++.+-..
T Consensus 285 k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~ 364 (1075)
T KOG2171|consen 285 KKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKE 364 (1075)
T ss_pred hhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHH
Confidence 211 1110 00 0 1225678888888875 55556667778888889999999999
Q ss_pred HHHHHHHHHHHHhhcc----ccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcC-CcchH----HHHHHHHHhhccCC
Q psy8267 369 VAATVQAIGKCAANIA----QVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQ-PEAYT----DIIRHMVRLSDSIT 439 (645)
Q Consensus 369 ~~~~i~~I~~la~k~~----~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~-p~~~~----~~i~~L~~~l~~i~ 439 (645)
|..+..+|+.+++--+ ...+..++..+..|.+...-|...+...+-|+-... |+.++ .+...|...+++..
T Consensus 365 R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~ 444 (1075)
T KOG2171|consen 365 RHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ 444 (1075)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC
Confidence 9999999999887533 345677778888888888888888889998887653 45443 34445556667666
Q ss_pred hHHHHHHH-HHHH--hccccc--CCCchHHHHHHHHH-hhcCCchHHHHHHHHhhh
Q psy8267 440 VPTARAAI-LWLL--GEYSHL--VPALGPDVLRKAAI-TFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 440 ~~~ak~~~-iwil--GEy~~~--i~~~~~diLr~l~~-~f~~e~~~vk~~iL~~~~ 489 (645)
.+.+.+.+ +-++ .|.+.. +..+-+.++.+... --.+.++.||-+++|+.+
T Consensus 445 ~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 445 NVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 66654322 2232 343321 11123445553222 233467899999999988
No 28
>KOG0212|consensus
Probab=98.35 E-value=0.00029 Score=77.15 Aligned_cols=355 Identities=18% Similarity=0.197 Sum_probs=231.7
Q ss_pred HHHHhccCCchhHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHcC-CCCHHHH-----HHHHHHHhC-CCccccHHH
Q psy8267 23 VVKNVVSKNIEVKKLVYVYLARYA-----EEQQDLALLSISTFQRALK-DPNQLIR-----ASALRVLSS-IRVPMIIPI 90 (645)
Q Consensus 23 vvkli~s~~~~~KkL~Yl~l~~~~-----~~~~dl~lL~iNsl~kDL~-~~N~~ir-----alALr~ls~-I~~~ei~~~ 90 (645)
+++.++.+-|+-+|..-+-+...- +.+.|-..=+|.-+-+|.. +++.--| |+|.-++|- .......+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 455555555666666655554432 2345556677777888874 4444333 333333321 122225677
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh----HHHHHHHHHHhhcCCChhHHHHHHH---HHHHHChhhh-hh-
Q psy8267 91 VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ----KEELVLVIEKLLQDKTTLVVGSAVM---AFEEVCPERI-DM- 161 (645)
Q Consensus 91 l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~----~~~~~~~l~~lL~D~~~~V~~sav~---~l~ei~~~~~-~l- 161 (645)
+.++|..|++|++.-||--|+.+++.+-+..... .+++++.+.++..|+|..|-++|=. ++.+|..++. .+
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFS 164 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccC
Confidence 8899999999999999999999988887765443 3778889999999999999886632 3445543332 22
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccccccccc
Q psy8267 162 IHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTEL 241 (645)
Q Consensus 162 i~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 241 (645)
+...+.-|-..+...+|...+.+++-+...-.. |.. +++. |
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~----P~~------~m~~---------------------------y-- 205 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV----PDL------EMIS---------------------------Y-- 205 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC----CcH------HHHh---------------------------c--
Confidence 122222233445566888888888877654321 311 0000 0
Q ss_pred ChhHHHHHHhhhhhhcCCChHHHHHHHHHHH----hcC--ChH-HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcc
Q psy8267 242 DPDHRLLLKNAKPLLQSRNAAVVMAVAQLFH----HLA--PRR-EVAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRR 313 (645)
Q Consensus 242 d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~----~l~--~~~-~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p 313 (645)
+-.+++-+-..|...+..|.--|=.++. .+. |.. .....++.++.-+ ++++++|-.+|..|..++...|
T Consensus 206 ---l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 206 ---LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred ---chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 1123443444556666666633322222 222 222 2345777777766 5889999999999999999888
Q ss_pred cchhhhhceE----E-EcCCCCh-HHHHHHHH---HHHHccCcCCHH------HHHHHHHHhhccccHHHHHHHHHHHHH
Q psy8267 314 ALFVPYLKSF----Y-VRSSDPT-HVKTLKLE---LLTTLASETSIA------SILREFQTYISSVDKAFVAATVQAIGK 378 (645)
Q Consensus 314 ~~~~~~~~~f----~-~l~~d~~-~Ir~~kLd---lL~~L~~~~Nv~------~Il~EL~~yl~~~d~~~~~~~i~~I~~ 378 (645)
..+-++...+ . |..+++. +||-.|-. .|.+++.+.--. .|++-|..|+.+...+-|-++..-|..
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 7666665553 3 5566555 56665543 466777654443 899999999999999999999999999
Q ss_pred HHhhcccc----HHHHHHHHHHhhccCChhhHHHHHHHHHHHhhc
Q psy8267 379 CAANIAQV----TDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQT 419 (645)
Q Consensus 379 la~k~~~~----~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~ 419 (645)
+-.|.|.. .+....++++-|++..+.|+--+..++..|...
T Consensus 363 l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 363 LYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 98888854 367788899999999888888888888888764
No 29
>KOG2171|consensus
Probab=98.32 E-value=0.00097 Score=78.71 Aligned_cols=378 Identities=15% Similarity=0.183 Sum_probs=221.3
Q ss_pred CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC---cccc---HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcC-
Q psy8267 49 QQDLALLSISTFQRALKDPNQLIRASALRVLSSIR---VPMI---IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD- 121 (645)
Q Consensus 49 ~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~---~~ei---~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~- 121 (645)
.||++=. +.+-.+|+|+-.|-.|++.++++. +... ++.+.+-..+++.|++.-||-.|+-|+..+....
T Consensus 116 WPell~~----L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 116 WPELLQF----LFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE 191 (1075)
T ss_pred hHHHHHH----HHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc
Confidence 5675443 344578999999999999999862 2333 3366667788999986669999999988877644
Q ss_pred --chh-------HHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHh------cCCCchhHHHHHH
Q psy8267 122 --PEQ-------KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLL------VDVDEWGQVFILN 186 (645)
Q Consensus 122 --p~~-------~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L------~~~~~W~Qv~iL~ 186 (645)
++. ++..+..+.+.+++.|......++.+|.|+.-..+.++.+++..++..- ++.++-.....|+
T Consensus 192 ~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 192 NNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred cchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 333 3556666777788888888888999999887665666666554443322 3456656666677
Q ss_pred HHHHHHhhhcCCCCCCCCCCC---CCCCC----CCC-CCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcC
Q psy8267 187 MLTRYARTQFTDPNLNENDSS---EDDDD----LDG-EDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQS 258 (645)
Q Consensus 187 lL~~y~r~~~~~P~~~~~~s~---~~~~~----l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s 258 (645)
++..+.+. -|.-...+.. ..... +.+ ..+..|+..++. |.| -..
T Consensus 272 ~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~--------------ded-----------~~~ 323 (1075)
T KOG2171|consen 272 FLVSLSEY---APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDL--------------DED-----------DEE 323 (1075)
T ss_pred HHHHHHHh---hHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccc--------------ccc-----------ccc
Confidence 66655433 1211000000 00000 000 001122221110 111 012
Q ss_pred CChHHHHHHH-HHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHH
Q psy8267 259 RNAAVVMAVA-QLFHHLAPRREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTL 336 (645)
Q Consensus 259 ~n~aVv~ea~-~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~ 336 (645)
.|+..-.+++ ++.++++++.-+..+...+-.+|. .+.--|..+|.+|..++.=.++...+
T Consensus 324 ~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~------------------ 385 (1075)
T KOG2171|consen 324 TPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG------------------ 385 (1075)
T ss_pred CcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH------------------
Confidence 2333333333 355788886556667777788885 56788999999999887644443332
Q ss_pred HHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHH-----HHHHHHHHhhccCCh-hhHHHHH
Q psy8267 337 KLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTD-----TCLTGLVSLLSYSDE-AVVAESV 410 (645)
Q Consensus 337 kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~-----~~v~~ll~LL~~~~~-~v~~e~v 410 (645)
|.+.|++-...++.+.++.+|-.+..+||+++..+++... .....|+..+...++ .|-..+.
T Consensus 386 ------------~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa 453 (1075)
T KOG2171|consen 386 ------------NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAA 453 (1075)
T ss_pred ------------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHH
Confidence 4456777788899999999999999999999998875543 333345555655543 4555555
Q ss_pred HHHHHHhhcCCc-chHH----HHHHHHHhhccCChHHHHHHHHHHHhcccccCCC-chH------HHHHHHHHhhc-CCc
Q psy8267 411 VVIKNLLQTQPE-AYTD----IIRHMVRLSDSITVPTARAAILWLLGEYSHLVPA-LGP------DVLRKAAITFV-NEE 477 (645)
Q Consensus 411 ~~i~~il~~~p~-~~~~----~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~-~~~------diLr~l~~~f~-~e~ 477 (645)
..+.+.....+. ..+. +..+++..+.+-..+.++..++--||.-++-..+ +.| ..|+.+..+-. ++.
T Consensus 454 ~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~ 533 (1075)
T KOG2171|consen 454 AALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDL 533 (1075)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhh
Confidence 566655555542 2222 2332333444445566666556666665543322 111 23444444333 344
Q ss_pred hHHHHHHHHhh
Q psy8267 478 DIVKLQVLNLA 488 (645)
Q Consensus 478 ~~vk~~iL~~~ 488 (645)
.+.|...+...
T Consensus 534 r~LrgktmEci 544 (1075)
T KOG2171|consen 534 RELRGKTMECL 544 (1075)
T ss_pred HHHHhhHHHHH
Confidence 56777654444
No 30
>KOG2023|consensus
Probab=98.30 E-value=8.8e-05 Score=82.36 Aligned_cols=385 Identities=18% Similarity=0.203 Sum_probs=231.6
Q ss_pred HHHHhccCCchhHHHHHHHHHHhcccCchHHH-HHHHHHHHHcCCCCHHHHHHHHHHHh-------CCCccccHHHHHHH
Q psy8267 23 VVKNVVSKNIEVKKLVYVYLARYAEEQQDLAL-LSISTFQRALKDPNQLIRASALRVLS-------SIRVPMIIPIVMLA 94 (645)
Q Consensus 23 vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~l-L~iNsl~kDL~~~N~~iralALr~ls-------~I~~~ei~~~l~~~ 94 (645)
++|.-.|+|-..++-+-..+..+.. .||.-= |+ -+.-++++.+...|++|==-|- +--.++....+-..
T Consensus 18 lLk~s~Spn~~~~~~~~~~leq~~~-~pdfnnYL~--~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~ 94 (885)
T KOG2023|consen 18 LLKNSQSPNSETRNNVQEKLEQFNL-FPDFNNYLI--YILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSE 94 (885)
T ss_pred HHHhccCCChHHHHHHHHHHHHHhc-ccchhceee--EEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHH
Confidence 3444457777888877777766654 566311 11 1223456666666766633332 12234555666666
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhcCch-hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHh
Q psy8267 95 IKDSSLDMSPYVRKTAAHAIPKLYSLDPE-QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLL 173 (645)
Q Consensus 95 I~~~l~d~~pyVRK~Aalal~kl~~~~p~-~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L 173 (645)
+.+++.|++|.+|-+.-.-+..+.....- .-+++.+.+.++|+.++....-.|..|+..||.+..+.+..
T Consensus 95 ~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds--------- 165 (885)
T KOG2023|consen 95 CLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS--------- 165 (885)
T ss_pred HHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh---------
Confidence 66777778888877766555555433211 12455666677777777666667777777777665433210
Q ss_pred cCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhh
Q psy8267 174 VDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAK 253 (645)
Q Consensus 174 ~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~ 253 (645)
+|. +..++.++....
T Consensus 166 ----~~~-------------------------------------------------------------~rpl~~mipkfl 180 (885)
T KOG2023|consen 166 ----DVL-------------------------------------------------------------TRPLNIMIPKFL 180 (885)
T ss_pred ----hcc-------------------------------------------------------------cCchHHhHHHHH
Confidence 010 001122333333
Q ss_pred hhhcCCChHHHHH---HHHHHHhcCChHH---HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhhhceE--E
Q psy8267 254 PLLQSRNAAVVMA---VAQLFHHLAPRRE---VAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPYLKSF--Y 324 (645)
Q Consensus 254 ~ll~s~n~aVv~e---a~~~i~~l~~~~~---~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~~~~f--~ 324 (645)
.+.+|.++.+.-. |++.++-+.+.+. +.+....+-.+-+ .+||+|--+-+++..+...+|+-+.||+..+ |
T Consensus 181 ~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~Ivey 260 (885)
T KOG2023|consen 181 QFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEY 260 (885)
T ss_pred HHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHH
Confidence 4455555544433 4444443444221 2233333333334 5689999999999999999999999998876 3
Q ss_pred -E--cCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHH-----------hh-------cccc------------------
Q psy8267 325 -V--RSSDPTHVKTLKLELLTTLASETSIASILREFQT-----------YI-------SSVD------------------ 365 (645)
Q Consensus 325 -~--l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~-----------yl-------~~~d------------------ 365 (645)
+ -.|.|..|...|-|-..++|...-.+.++..-+. |. .+.+
T Consensus 261 ML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhk 340 (885)
T KOG2023|consen 261 MLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHK 340 (885)
T ss_pred HHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhh
Confidence 2 2456688999999999999998766655543221 21 1000
Q ss_pred ----------------------------HHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccC---ChhhHHHH-HHHH
Q psy8267 366 ----------------------------KAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYS---DEAVVAES-VVVI 413 (645)
Q Consensus 366 ----------------------------~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~---~~~v~~e~-v~~i 413 (645)
=.+|+-...++..+|.-|+ +.+++.++.+|+.. .+.++.|+ |-++
T Consensus 341 sk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~~l~PlLk~~L~~~~W~vrEagvLAl 417 (885)
T KOG2023|consen 341 SKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLPILLPLLKEHLSSEEWKVREAGVLAL 417 (885)
T ss_pred chhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhH---HHHHHHHHHHHHHHcCcchhhhhhhhHHHH
Confidence 1255666777777776654 34667777766532 23344443 4455
Q ss_pred HHHhhc-----CCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchH-----HHHHHHHHhhcCCchHHHHH
Q psy8267 414 KNLLQT-----QPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGP-----DVLRKAAITFVNEEDIVKLQ 483 (645)
Q Consensus 414 ~~il~~-----~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~-----diLr~l~~~f~~e~~~vk~~ 483 (645)
-.|-.. +|.+- .++..+...+++ +-|.+|.-.+|.+|.|++.+..-++ .++..+.++..+.+..||-+
T Consensus 418 GAIAEGcM~g~~p~Lp-eLip~l~~~L~D-KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEA 495 (885)
T KOG2023|consen 418 GAIAEGCMQGFVPHLP-ELIPFLLSLLDD-KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEA 495 (885)
T ss_pred HHHHHHHhhhcccchH-HHHHHHHHHhcc-CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHH
Confidence 555432 34332 466777777776 5688888889999999987654233 46777788888888999998
Q ss_pred HHHhhh
Q psy8267 484 VLNLAP 489 (645)
Q Consensus 484 iL~~~~ 489 (645)
...+++
T Consensus 496 AcsAfA 501 (885)
T KOG2023|consen 496 ACSAFA 501 (885)
T ss_pred HHHHHH
Confidence 888888
No 31
>KOG1060|consensus
Probab=98.26 E-value=0.0012 Score=74.93 Aligned_cols=379 Identities=19% Similarity=0.209 Sum_probs=210.5
Q ss_pred HHHHHHHHhCCC-----Ccccch-HHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy8267 3 KGTCCYMMAKGR-----DASDLF-PAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASAL 76 (645)
Q Consensus 3 lkkli~l~~~G~-----dvs~lf-~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralAL 76 (645)
+||++++...-| |..-+- ...=|-+.-+|..+|--+-=.++-. .-|-++-++--+++|-..|+.|++|..|-
T Consensus 87 VKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsI--Rvp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 87 VKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSI--RVPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 578887765544 222221 1122334456666655443233221 11333334444678889999999998777
Q ss_pred HHHhCCC--ccccHHHHHHHHHhhcCCCChHHHHHHHHHHH-----------HHhh----cCchh---------------
Q psy8267 77 RVLSSIR--VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIP-----------KLYS----LDPEQ--------------- 124 (645)
Q Consensus 77 r~ls~I~--~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~-----------kl~~----~~p~~--------------- 124 (645)
+++-++- .++--+.+...|++++.|.+|.|--.|++|.- |=|+ +-||.
T Consensus 165 ~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RY 244 (968)
T KOG1060|consen 165 HAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRY 244 (968)
T ss_pred HhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHH
Confidence 7776652 34444588899999999999999999999842 2222 11211
Q ss_pred ----------------------------------------HHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHH
Q psy8267 125 ----------------------------------------KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHK 164 (645)
Q Consensus 125 ----------------------------------------~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~ 164 (645)
..-+.+-+..||...++.|+.+++.++..+.|.+- .++
T Consensus 245 AR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~~ 322 (968)
T KOG1060|consen 245 ARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VTK 322 (968)
T ss_pred HHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HHH
Confidence 01233444557778889999999999999998753 233
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChh
Q psy8267 165 SYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPD 244 (645)
Q Consensus 165 ~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d 244 (645)
....|++.|.. ++=.|-.+|+-+..+... +|.. | ++-.+.||=... ||+
T Consensus 323 i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~---~~~l--------F----~P~lKsFfv~ss---------------Dp~ 371 (968)
T KOG1060|consen 323 IAKALVRLLRS-NREVQYVVLQNIATISIK---RPTL--------F----EPHLKSFFVRSS---------------DPT 371 (968)
T ss_pred HHHHHHHHHhc-CCcchhhhHHHHHHHHhc---chhh--------h----hhhhhceEeecC---------------CHH
Confidence 45556665554 344566666655554321 1211 1 112345654433 222
Q ss_pred HH--HHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhhccc-chhhhhc
Q psy8267 245 HR--LLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRA-LFVPYLK 321 (645)
Q Consensus 245 ~~--~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~s~~niryv~L~~l~~l~~~~p~-~~~~~~~ 321 (645)
.- +=|+.+..+....|.+-++--.+.|++-.+.+-...+++++++.-+....+.--.|..|..+...+.+ ++.....
T Consensus 372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~ 451 (968)
T KOG1060|consen 372 QVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVV 451 (968)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHH
Confidence 21 11233445556667677776677777665554344556677766554444555555655555443322 2222222
Q ss_pred eEEEcCCCChHHHHHHHHHHHHccCcCCH--HHHHHHHHHhhccccHH-HHHHHHHHHHHHHhhccccHHHHHHHHHHhh
Q psy8267 322 SFYVRSSDPTHVKTLKLELLTTLASETSI--ASILREFQTYISSVDKA-FVAATVQAIGKCAANIAQVTDTCLTGLVSLL 398 (645)
Q Consensus 322 ~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv--~~Il~EL~~yl~~~d~~-~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL 398 (645)
.+-.|...+=. ..|+..|..-+.+.... -|.-++=-||..++..|..+..++..+.+-+
T Consensus 452 ------------------vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksF 513 (968)
T KOG1060|consen 452 ------------------VIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSF 513 (968)
T ss_pred ------------------HHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhh
Confidence 12222211111 22444444433332222 2333444577778877777777777777778
Q ss_pred ccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHh
Q psy8267 399 SYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRL 434 (645)
Q Consensus 399 ~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~ 434 (645)
++.++.+.-++.....++...+++..+.++..+.++
T Consensus 514 s~E~~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L 549 (968)
T KOG1060|consen 514 SDEGDEVKLQILNLSAKLYLTNIDQTKLLVQYVFEL 549 (968)
T ss_pred ccccchhhHHHHHhhhhheEechhhHHHHHHHHHHH
Confidence 888887777777666666655665544444444443
No 32
>KOG1062|consensus
Probab=98.10 E-value=0.00046 Score=78.38 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=97.4
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh-hhhHHHHHHHHHHhc
Q psy8267 96 KDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI-DMIHKSYRKLCNLLV 174 (645)
Q Consensus 96 ~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~-~li~~~~~kL~~~L~ 174 (645)
.|++.+++=--||...+|+.=+..-..|+.--+.+-|.+=|+..|..|++-|+.++..+|+... .-+.+-+ -+.|.
T Consensus 76 lKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeV---e~Ll~ 152 (866)
T KOG1062|consen 76 LKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEV---ERLLQ 152 (866)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHH---HHHHh
Confidence 4566666666677777777766665666555556667777788889999999999998885433 2233333 34445
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhh
Q psy8267 175 DVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKP 254 (645)
Q Consensus 175 ~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ 254 (645)
..+|+..-|.+-.+.++.|. .|.. .+.++.....
T Consensus 153 ~~~~~irKKA~Lca~r~irK---~P~l-------------------------------------------~e~f~~~~~~ 186 (866)
T KOG1062|consen 153 HRDPYIRKKAALCAVRFIRK---VPDL-------------------------------------------VEHFVIAFRK 186 (866)
T ss_pred CCCHHHHHHHHHHHHHHHHc---CchH-------------------------------------------HHHhhHHHHH
Confidence 68898888888888888764 4532 2345666677
Q ss_pred hhcCCChHHHHHHHHHHHhc---CCh--HHHHHHHHHHHHHh
Q psy8267 255 LLQSRNAAVVMAVAQLFHHL---APR--REVAIIAKALVRLL 291 (645)
Q Consensus 255 ll~s~n~aVv~ea~~~i~~l---~~~--~~~~~~~~~L~~lL 291 (645)
+|...+..|+...+.++..+ ++. +..+.++..|++.|
T Consensus 187 lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iL 228 (866)
T KOG1062|consen 187 LLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKIL 228 (866)
T ss_pred HHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 78888888888887776543 332 33455665555544
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.03 E-value=2.8e-05 Score=65.85 Aligned_cols=84 Identities=35% Similarity=0.487 Sum_probs=65.3
Q ss_pred HHHHHHc-CCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhh
Q psy8267 58 STFQRAL-KDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLL 136 (645)
Q Consensus 58 Nsl~kDL-~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL 136 (645)
..+.+-| +|+|+.+|..|++++|.++.++..+ .+.+++.|++|.||..|+.++.++- + ++.++.+.+++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~----~L~~~l~d~~~~vr~~a~~aL~~i~--~----~~~~~~L~~~l 71 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAIP----ALIELLKDEDPMVRRAAARALGRIG--D----PEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHH----HHHHHHTSSSHHHHHHHHHHHHCCH--H----HHTHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHH----HHHHHHcCCCHHHHHHHHHHHHHhC--C----HHHHHHHHHHH
Confidence 4567777 8999999999999999998876544 4566779999999999999999884 2 33456667777
Q ss_pred cC-CChhHHHHHHHHH
Q psy8267 137 QD-KTTLVVGSAVMAF 151 (645)
Q Consensus 137 ~D-~~~~V~~sav~~l 151 (645)
.| ++..|..+|+.++
T Consensus 72 ~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 72 QDDDDEVVREAAAEAL 87 (88)
T ss_dssp TC-SSHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHhhc
Confidence 66 5566667777665
No 34
>KOG0166|consensus
Probab=98.00 E-value=0.0014 Score=72.47 Aligned_cols=284 Identities=18% Similarity=0.185 Sum_probs=191.0
Q ss_pred HHHHhhc-CCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh---hh--
Q psy8267 93 LAIKDSS-LDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI---DM-- 161 (645)
Q Consensus 93 ~~I~~~l-~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~---~l-- 161 (645)
+.+.+++ .+.+|-++--||-|+..+-....+.- .+..+.+..||.+++.-|.--|+-|+..|.-+.+ ++
T Consensus 112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl 191 (514)
T KOG0166|consen 112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVL 191 (514)
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHH
Confidence 3344555 47789999999999999998777642 3567788999999999999999999998875433 22
Q ss_pred hHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccc
Q psy8267 162 IHKSYRKLCNLLVDVDEWG-QVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240 (645)
Q Consensus 162 i~~~~~kL~~~L~~~~~W~-Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~ 240 (645)
-++.+..|+..+...++-. -..+.-.|..+||.- +|.- .
T Consensus 192 ~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk--~P~P----------~---------------------------- 231 (514)
T KOG0166|consen 192 SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK--NPSP----------P---------------------------- 231 (514)
T ss_pred hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC--CCCC----------c----------------------------
Confidence 2445677888887777611 112333466677641 2311 0
Q ss_pred cChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcC--ChHHHH-----HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhc
Q psy8267 241 LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLA--PRREVA-----IIAKALVRLLR-SSREVQTVVLTTIASLAVKR 312 (645)
Q Consensus 241 ~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~--~~~~~~-----~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~ 312 (645)
+| ..+.++..+..++++...-|+-.|+.++.+++ +.+.+. .....|+.+|. .+++++--+|+++.-++.-.
T Consensus 232 ~~-~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 232 FD-VVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred HH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 11 23567788888999999999999999988876 333222 35578899995 67889988999998876522
Q ss_pred cc----chh-hhhceEE-EcC-CCChHHHHHHHHHHHHccCcCCHHH--------HHHHHHHhhccccHHHHHHHHHHHH
Q psy8267 313 RA----LFV-PYLKSFY-VRS-SDPTHVKTLKLELLTTLASETSIAS--------ILREFQTYISSVDKAFVAATVQAIG 377 (645)
Q Consensus 313 p~----~~~-~~~~~f~-~l~-~d~~~Ir~~kLdlL~~L~~~~Nv~~--------Il~EL~~yl~~~d~~~~~~~i~~I~ 377 (645)
.. ++. .-+..|- ++. ++..+||+.+.-++.+++. .|.+. ++..|.+-+...|.+.++|+.-+|+
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence 21 111 1222222 233 4446799999999999876 55432 4578888888999999999999999
Q ss_pred HHHhhcccc------HHHHHHHHHHhhccCChhhHHHHHHHHHHHhh
Q psy8267 378 KCAANIAQV------TDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQ 418 (645)
Q Consensus 378 ~la~k~~~~------~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~ 418 (645)
.++..-... ..-|+.-+.++|...+..+..-+...+..|++
T Consensus 390 N~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred hhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 887643211 12355666777765555454444444554443
No 35
>KOG0212|consensus
Probab=97.99 E-value=0.02 Score=63.26 Aligned_cols=401 Identities=17% Similarity=0.189 Sum_probs=228.5
Q ss_pred HhCCCCc----ccchHHHHHHhccCCchhHHHHHHHHHHhccc-CchHH---HHHHHHHHHHcCCCCHHHHHHH---HHH
Q psy8267 10 MAKGRDA----SDLFPAVVKNVVSKNIEVKKLVYVYLARYAEE-QQDLA---LLSISTFQRALKDPNQLIRASA---LRV 78 (645)
Q Consensus 10 ~~~G~dv----s~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~-~~dl~---lL~iNsl~kDL~~~N~~iralA---Lr~ 78 (645)
+.+|.|. ....+.|+.+++-+|..++--+.-.+-..++- ..+.. =.+--.+.|-..|+++.+|+.| -|.
T Consensus 72 iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRL 151 (675)
T KOG0212|consen 72 IALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRL 151 (675)
T ss_pred HHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHH
Confidence 3577764 44567778888877776665444444333332 12210 0222346777789999999766 355
Q ss_pred HhCCCcccc----HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh-----HHHHHHHHHHhhcCCChhHHHHHHH
Q psy8267 79 LSSIRVPMI----IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ-----KEELVLVIEKLLQDKTTLVVGSAVM 149 (645)
Q Consensus 79 ls~I~~~ei----~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~-----~~~~~~~l~~lL~D~~~~V~~sav~ 149 (645)
+-.|..++- .+.+++-++.-+.+.+|+.|.--+-=+.-++ .-|+. .+.+.+.+-++|.|+++.|..-+=.
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t 230 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD-SVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDT 230 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHH
Confidence 555544433 4566777778888889999987655444444 44553 3788889999999999998853333
Q ss_pred ----HHHHHC--hhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q psy8267 150 ----AFEEVC--PERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYD 223 (645)
Q Consensus 150 ----~l~ei~--~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~ 223 (645)
.+.||. |+..+. .....-+...+..++|..|-+.|.-+..+.... |.. .+
T Consensus 231 ~l~~fL~eI~s~P~s~d~-~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~---g~~----------~l---------- 286 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSMDY-DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP---GRD----------LL---------- 286 (675)
T ss_pred HHHHHHHHHhcCccccCc-ccchhhccccccCCcHHHHHHHHHHHHHHhcCC---Ccc----------hh----------
Confidence 334554 222111 011222455567789999999999888877431 110 11
Q ss_pred CcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHH----HHHhc-CCh-----HHHHHHHHHHHHHhCC
Q psy8267 224 DETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQ----LFHHL-APR-----REVAIIAKALVRLLRS 293 (645)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~----~i~~l-~~~-----~~~~~~~~~L~~lL~s 293 (645)
+-+-.++....|++.+.-..-..+++. ..+.+ +.. -+.+.+.+.|.+.++.
T Consensus 287 -------------------~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~ 347 (675)
T KOG0212|consen 287 -------------------LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD 347 (675)
T ss_pred -------------------hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc
Confidence 001123444445544433321222222 12222 111 1245677888888875
Q ss_pred C-hhHHHHHHHHHHHHHhhcccchhhhhceEE--E---cCCCChHHHHHHHHHHHHccCcCCHHH---HHHHHHHhhccc
Q psy8267 294 S-REVQTVVLTTIASLAVKRRALFVPYLKSFY--V---RSSDPTHVKTLKLELLTTLASETSIAS---ILREFQTYISSV 364 (645)
Q Consensus 294 ~-~niryv~L~~l~~l~~~~p~~~~~~~~~f~--~---l~~d~~~Ir~~kLdlL~~L~~~~Nv~~---Il~EL~~yl~~~ 364 (645)
+ -+.|..+|+.+..+-.+.|+-+-.|...+| . +.|.+..+-.++|+++-.+|+..|... -+.-|++-....
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKED 427 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhh
Confidence 4 589999999999999999976666777666 2 356567799999999999999877643 333333322222
Q ss_pred cHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCCh-hhHHHHHHHHHHHhhcCCcchH--HHH--------HHHHH
Q psy8267 365 DKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDE-AVVAESVVVIKNLLQTQPEAYT--DII--------RHMVR 433 (645)
Q Consensus 365 d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~-~v~~e~v~~i~~il~~~p~~~~--~~i--------~~L~~ 433 (645)
..-......--|.+++... .++.....+-.+|....+ ......|+.+-.++-.-||+.. .-+ +.++.
T Consensus 428 ~~~l~~Rg~lIIRqlC~lL--~aE~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlTStELf~LR~~Lk~lsn~es~~lF~ 505 (675)
T KOG0212|consen 428 TKLLEVRGNLIIRQLCLLL--NAERIYRSIADILEREENLKFASTMVQALNTILLTSTELFQLRNKLKDLSNEESQNLFC 505 (675)
T ss_pred hHHHHhhhhHHHHHHHHHh--CHHHHHHHHHHHHhccccchHHHHHHHHHHhhhcccHHHHHHHHHHHhccChhhhHHHH
Confidence 2222222233344444332 223344444455554433 3566666666666655665432 001 11222
Q ss_pred hhc--cCChHHHHHHHHHHHhcccc
Q psy8267 434 LSD--SITVPTARAAILWLLGEYSH 456 (645)
Q Consensus 434 ~l~--~i~~~~ak~~~iwilGEy~~ 456 (645)
.+. =++.|.+..+.+.+--.|.|
T Consensus 506 cLy~sWchnPva~~SLClLtQnYqh 530 (675)
T KOG0212|consen 506 CLYRSWCHNPVATLSLCLLTQNYQH 530 (675)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 221 14667777776666666654
No 36
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.90 E-value=0.00022 Score=69.39 Aligned_cols=144 Identities=14% Similarity=0.199 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHHHHHHhhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccCcCCHH---HHHHHHHHhhccccHHHH
Q psy8267 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLASETSIA---SILREFQTYISSVDKAFV 369 (645)
Q Consensus 294 ~~niryv~L~~l~~l~~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~---~Il~EL~~yl~~~d~~~~ 369 (645)
+|.+|-.++.++..|+.++|+++++|...++ ++.|+++.||+.++-+|..|..++-++ .++.++...+.+.|+++|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 5788999999999999999999999999998 889999999999999999999876543 455788888899999999
Q ss_pred HHHHHHHHHHHhh-ccccHHHHHHHHHHhhccCCh-----hh-HHHHHHHHHHHhhcC--CcchHHHHHHHHHhhcc
Q psy8267 370 AATVQAIGKCAAN-IAQVTDTCLTGLVSLLSYSDE-----AV-VAESVVVIKNLLQTQ--PEAYTDIIRHMVRLSDS 437 (645)
Q Consensus 370 ~~~i~~I~~la~k-~~~~~~~~v~~ll~LL~~~~~-----~v-~~e~v~~i~~il~~~--p~~~~~~i~~L~~~l~~ 437 (645)
..+...+..+..+ .|.....++.-++.-++...+ .. .++-...++-++..- ++..+.++.+++.-+..
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~ 157 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLN 157 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999988 555443333333333332211 11 122223333343332 34455666666665543
No 37
>KOG1241|consensus
Probab=97.89 E-value=0.011 Score=67.36 Aligned_cols=192 Identities=13% Similarity=0.195 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhC----CChhHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHH
Q psy8267 280 VAIIAKALVRLLR----SSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILR 355 (645)
Q Consensus 280 ~~~~~~~L~~lL~----s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~ 355 (645)
...+++.|++--. +++|.|-.+-++|..|+...|+-..+- +....+-++.+|-+. ++ .
T Consensus 496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~-------------v~~~~l~il~kl~q~--i~---~ 557 (859)
T KOG1241|consen 496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM-------------VQKLTLVILEKLDQT--IS---S 557 (859)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH-------------HHHHHHHHHHHHHHH--HH---H
Confidence 3445555555432 457999999999999998777644332 222222222211100 00 0
Q ss_pred HHHHhhccc-cHHHHHHHHHHHH----HHHhhccccHHHHHHHHHHhhccCCh-hhHHHHHHHHHHHhhcCCcch----H
Q psy8267 356 EFQTYISSV-DKAFVAATVQAIG----KCAANIAQVTDTCLTGLVSLLSYSDE-AVVAESVVVIKNLLQTQPEAY----T 425 (645)
Q Consensus 356 EL~~yl~~~-d~~~~~~~i~~I~----~la~k~~~~~~~~v~~ll~LL~~~~~-~v~~e~v~~i~~il~~~p~~~----~ 425 (645)
+.+.|.... -.++..-+...++ +.+.+++++++..+..+++++..++. .+-+|+...+--++..-...+ .
T Consensus 558 ~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~ 637 (859)
T KOG1241|consen 558 QILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP 637 (859)
T ss_pred HhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH
Confidence 111111000 0112222222222 23346777888888888999888443 455666666555554322222 2
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhcccccCCC----chHHHHHHHHHhhcCC--chHHHHHHHHhhh
Q psy8267 426 DIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPA----LGPDVLRKAAITFVNE--EDIVKLQVLNLAP 489 (645)
Q Consensus 426 ~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~----~~~diLr~l~~~f~~e--~~~vk~~iL~~~~ 489 (645)
.....|..-|.+.++..+.++++-++|.-+..... ++.++...+++...++ +..||.+||..|.
T Consensus 638 ~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~Fg 707 (859)
T KOG1241|consen 638 AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFG 707 (859)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHH
Confidence 33445555566777888988889999998765433 3568889999988775 5689999999998
No 38
>KOG1242|consensus
Probab=97.80 E-value=0.021 Score=63.87 Aligned_cols=397 Identities=15% Similarity=0.193 Sum_probs=217.4
Q ss_pred HHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccC---chHHHHHHHHHHHHcCCCCHHHHH----HHH----H
Q psy8267 9 MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQ---QDLALLSISTFQRALKDPNQLIRA----SAL----R 77 (645)
Q Consensus 9 l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~---~dl~lL~iNsl~kDL~~~N~~ira----lAL----r 77 (645)
.+..|.+.+.......+++.+.++..++=+=-.+-.+.+.. .+.-...+.++.+-.+|.+...|- .|. .
T Consensus 125 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~ 204 (569)
T KOG1242|consen 125 VLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG 204 (569)
T ss_pred HHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH
Confidence 34578888888899999999888776543332333332221 111224445677777776654443 222 2
Q ss_pred HHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh-cCchhHHHHH-HHHHHhhcC--CChhHHHHHHHHHHH
Q psy8267 78 VLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS-LDPEQKEELV-LVIEKLLQD--KTTLVVGSAVMAFEE 153 (645)
Q Consensus 78 ~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~-~~p~~~~~~~-~~l~~lL~D--~~~~V~~sav~~l~e 153 (645)
.+|.-..|.+++ +.+.|..+..|..++||..|..|+--+.+ .++..++.+. ..|..+..+ +........+.++.+
T Consensus 205 ~Lg~~~EPyiv~-~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 205 NLGPPFEPYIVP-ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred hcCCCCCchHHh-hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334445555554 56788899999999999999998877666 4555555443 345556666 566666667777778
Q ss_pred HChhhhhhh-HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccc
Q psy8267 154 VCPERIDMI-HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKN 232 (645)
Q Consensus 154 i~~~~~~li-~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~ 232 (645)
..|+..++. ...++.+...|.|..|=.+-.-...+.+|+.. . +
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv------i-d----------------------------- 327 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV------I-D----------------------------- 327 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh------h-c-----------------------------
Confidence 888776543 34467788888888888888888888888742 0 0
Q ss_pred cccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHh------cCChHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q psy8267 233 ETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHH------LAPRREVAIIAKALVRLLRSSREVQTVVLTTIA 306 (645)
Q Consensus 233 ~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~------l~~~~~~~~~~~~L~~lL~s~~niryv~L~~l~ 306 (645)
++|.+.++..+...+.+.+. -+-+|+..+.. +.+ ..+..++..|.|=++
T Consensus 328 ---------N~dI~~~ip~Lld~l~dp~~-~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~-------------- 382 (569)
T KOG1242|consen 328 ---------NPDIQKIIPTLLDALADPSC-YTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLA-------------- 382 (569)
T ss_pred ---------cHHHHHHHHHHHHHhcCccc-chHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHh--------------
Confidence 13334444433332332221 22333332221 111 123333333333221
Q ss_pred HHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHH---Hcc-CcCCHHHHH----HHHHHhhccccHHHHHHHHHHHHH
Q psy8267 307 SLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLT---TLA-SETSIASIL----REFQTYISSVDKAFVAATVQAIGK 378 (645)
Q Consensus 307 ~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~---~L~-~~~Nv~~Il----~EL~~yl~~~d~~~~~~~i~~I~~ 378 (645)
+.+.++||++..+.- +++ ++..+...+ ..|..-+.+.+++.|..+.+++|.
T Consensus 383 ---------------------eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 383 ---------------------ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGA 441 (569)
T ss_pred ---------------------hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Confidence 223345554444433 333 344444444 445555666789999999999987
Q ss_pred HHhhccccH-HHHHHHHHHhhccC-ChhhHHHHHHHHHHHhhcCC-cchHHHHHHHHHhhc-cCChHHHHHHHHHHHhcc
Q psy8267 379 CAANIAQVT-DTCLTGLVSLLSYS-DEAVVAESVVVIKNLLQTQP-EAYTDIIRHMVRLSD-SITVPTARAAILWLLGEY 454 (645)
Q Consensus 379 la~k~~~~~-~~~v~~ll~LL~~~-~~~v~~e~v~~i~~il~~~p-~~~~~~i~~L~~~l~-~i~~~~ak~~~iwilGEy 454 (645)
+-++..... +..+.++...++.. +..-.......+..++...- +....+...+..... ...++..+-+.+|+++=-
T Consensus 442 l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~l 521 (569)
T KOG1242|consen 442 LLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLL 521 (569)
T ss_pred HHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhcc
Confidence 776644332 33334444444322 22233344445555554332 112222222222211 112344555667776532
Q ss_pred ----cccCCCchHHHHHHHHHhhcCCchHHHHHHHHhh
Q psy8267 455 ----SHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLA 488 (645)
Q Consensus 455 ----~~~i~~~~~diLr~l~~~f~~e~~~vk~~iL~~~ 488 (645)
+.......-+++..+++.-.++++.++..++.+.
T Consensus 522 p~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~~ 559 (569)
T KOG1242|consen 522 PYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEAG 559 (569)
T ss_pred chhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhhh
Confidence 2222223456777777777777777776666544
No 39
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=97.79 E-value=9e-05 Score=65.24 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=64.2
Q ss_pred ceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCC-cccCCCCceEEEEeEE-ecCCC
Q psy8267 521 LSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEI-ASIDPGLAVEVSLGLN-LNDST 598 (645)
Q Consensus 521 l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~-~~~~~ 598 (645)
|.+.+++.| .++.+.+.++|+|++..+|++|++.+. + |.++.++-.+.- +.++|++++++.+.+. -.++.
T Consensus 7 l~I~~~~~~-----~~~~~~i~~~~~N~s~~~it~f~~~~a--v-pk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~~~~~ 78 (104)
T smart00809 7 LQIGFKFER-----RPGLIRITLTFTNKSPSPITNFSFQAA--V-PKSLKLQLQPPSSPTLPPGGQITQVLKVENPGKFP 78 (104)
T ss_pred EEEEEEEEc-----CCCeEEEEEEEEeCCCCeeeeEEEEEE--c-ccceEEEEcCCCCCccCCCCCEEEEEEEECCCCCC
Confidence 888888877 567899999999999999999999877 3 335666544443 3899999999999888 55566
Q ss_pred CCCccEEeecc
Q psy8267 599 QPLSPRLVWGV 609 (645)
Q Consensus 599 ~~~~~~~~~~~ 609 (645)
.++.++++|.+
T Consensus 79 ~~~~~~vsy~~ 89 (104)
T smart00809 79 LRLRLRLSYLL 89 (104)
T ss_pred EEEEEEEEEEE
Confidence 67789999865
No 40
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.72 E-value=0.0045 Score=66.09 Aligned_cols=96 Identities=29% Similarity=0.386 Sum_probs=74.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q psy8267 55 LSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEK 134 (645)
Q Consensus 55 L~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~ 134 (645)
.....+.+.+.|+++.+|..|...++.++..+.++. +.+.+.|.++.||..|+.++.++ .+|+..+.+++.+.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~----l~~~l~d~~~~vr~~a~~aLg~~--~~~~a~~~li~~l~~ 116 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPL----LRELLSDEDPRVRDAAADALGEL--GDPEAVPPLVELLEN 116 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHH----HHHHhcCCCHHHHHHHHHHHHcc--CChhHHHHHHHHHHc
Confidence 356778888999999999999999999888776554 47888999999999999988876 356555554433333
Q ss_pred hhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 135 LLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 135 lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
|.+..|..+|..++..+...+.
T Consensus 117 ---d~~~~vR~~aa~aL~~~~~~~a 138 (335)
T COG1413 117 ---DENEGVRAAAARALGKLGDERA 138 (335)
T ss_pred ---CCcHhHHHHHHHHHHhcCchhh
Confidence 8899999999998888875543
No 41
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.013 Score=64.55 Aligned_cols=332 Identities=13% Similarity=0.152 Sum_probs=205.1
Q ss_pred CCHHHHHHHHHHHhCCCc-cccHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCCh
Q psy8267 67 PNQLIRASALRVLSSIRV-PMIIPIVMLAIKDSSLDMS----PYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTT 141 (645)
Q Consensus 67 ~N~~iralALr~ls~I~~-~ei~~~l~~~I~~~l~d~~----pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~ 141 (645)
.|+.-.--||-.|..++- ..|+.. .+.+.+..+. ..-.=--+-++..+...+|+...++.+.+...|+|+-.
T Consensus 202 ~~~isqYHalGlLyq~kr~dkma~l---klv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~e 278 (898)
T COG5240 202 GNPISQYHALGLLYQSKRTDKMAQL---KLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFE 278 (898)
T ss_pred CChHHHHHHHHHHHHHhcccHHHHH---HHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcch
Confidence 346666677777777653 333322 1222222221 11111112234556667899889999999999999988
Q ss_pred hHHHHHHHHHHHHChhhh--hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCC
Q psy8267 142 LVVGSAVMAFEEVCPERI--DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKK 219 (645)
Q Consensus 142 ~V~~sav~~l~ei~~~~~--~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~ 219 (645)
+|..-+..+++.+..++. +++.+.+.-|-..|....--.+-..+|+|.+.+-. .|+.-.
T Consensus 279 mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~---~P~kv~---------------- 339 (898)
T COG5240 279 MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMK---YPQKVS---------------- 339 (898)
T ss_pred hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh---CCceee----------------
Confidence 998888777776654442 34445555555556666666677777777777643 253210
Q ss_pred CCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHH
Q psy8267 220 PFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQ 298 (645)
Q Consensus 220 ~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~nir 298 (645)
+-++.+ ..+..+.|..+-.-|+-+++.-++.+.+..+++.+..|+. -..+-+
T Consensus 340 --------------------vcN~ev-------EsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FK 392 (898)
T COG5240 340 --------------------VCNKEV-------ESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFK 392 (898)
T ss_pred --------------------ecChhH-------HHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCce
Confidence 011222 2445677888888888888888887778889999889885 345788
Q ss_pred HHHHHHHHHHHhhcccchhhh---hceEEEcCCCChHHHHHHHHHHHHccC--cCCHHHHHHHHHHhhccccHHHHHHHH
Q psy8267 299 TVVLTTIASLAVKRRALFVPY---LKSFYVRSSDPTHVKTLKLELLTTLAS--ETSIASILREFQTYISSVDKAFVAATV 373 (645)
Q Consensus 299 yv~L~~l~~l~~~~p~~~~~~---~~~f~~l~~d~~~Ir~~kLdlL~~L~~--~~Nv~~Il~EL~~yl~~~d~~~~~~~i 373 (645)
.++++++..|+...|.--..+ +.+..|- .---.-|+-..|.+..+.. ++.-+.++.+|-+|+.++. |-+-++
T Consensus 393 iI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~-eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDce--y~~I~v 469 (898)
T COG5240 393 IIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ-EGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCE--YHQITV 469 (898)
T ss_pred EEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcc--hhHHHH
Confidence 899999999998888532222 2222222 3335578888888876654 4667788888888887654 566677
Q ss_pred HHHHHHHhhcccc--HHHHHHHHHHhhccCChhhHHHHHHHHHHHhhc--CCcchHHHHHHHHHhhccCChHHHHHHHHH
Q psy8267 374 QAIGKCAANIAQV--TDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQT--QPEAYTDIIRHMVRLSDSITVPTARAAILW 449 (645)
Q Consensus 374 ~~I~~la~k~~~~--~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~--~p~~~~~~i~~L~~~l~~i~~~~ak~~~iw 449 (645)
+-+|.+++--|.. ...|+..+..-+-..+..|...+++.+.+.--+ ++-.++.+...|-+.+++ ++.++|-.+.+
T Consensus 470 rIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD-~DdeVRdrAsf 548 (898)
T COG5240 470 RILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLND-QDDEVRDRASF 548 (898)
T ss_pred HHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhc-ccHHHHHHHHH
Confidence 7778888766533 345666555544445566777777776554332 334455555555555544 34455444334
Q ss_pred HH
Q psy8267 450 LL 451 (645)
Q Consensus 450 il 451 (645)
.+
T Consensus 549 ~l 550 (898)
T COG5240 549 LL 550 (898)
T ss_pred HH
Confidence 43
No 42
>KOG1020|consensus
Probab=97.67 E-value=0.048 Score=66.39 Aligned_cols=436 Identities=19% Similarity=0.154 Sum_probs=221.3
Q ss_pred CchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccc----cHHHHHHHHHhhcCCCChHH
Q psy8267 31 NIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPM----IIPIVMLAIKDSSLDMSPYV 106 (645)
Q Consensus 31 ~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~e----i~~~l~~~I~~~l~d~~pyV 106 (645)
+++--++.|.|+..-..--+- .=-..+-+..-|..+-.-+|+=|||+++.|...+ .-+.|-.+|..-+.|++.-|
T Consensus 793 d~~~a~li~~~la~~r~f~~s-fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQS-FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHh-hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHH
Confidence 355566777776443321111 0112233444567888999999999999985322 12456778889999999999
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhh--hHHHHHHHHHHhcCCCchhHHHH
Q psy8267 107 RKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDM--IHKSYRKLCNLLVDVDEWGQVFI 184 (645)
Q Consensus 107 RK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~l--i~~~~~kL~~~L~~~~~W~Qv~i 184 (645)
|-+|+.-+.|..--+||.++++.+.|.+-..|....|.--|+.-+.++|-+.+++ +....-|+++...|-..-.|--.
T Consensus 872 REAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv 951 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLV 951 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHH
Confidence 9999999999998999999999999999999999999999999999999765543 22334455555554333233333
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCCh---
Q psy8267 185 LNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNA--- 261 (645)
Q Consensus 185 L~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~--- 261 (645)
...|..+- |..+..... + .-++..+.-.-.....+.....+.--+++...++..+.-.+.
T Consensus 952 ~etf~klW---F~p~~~~~d----------~----~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~ 1014 (1692)
T KOG1020|consen 952 RETFLKLW---FTPVPEVND----------Q----PAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESV 1014 (1692)
T ss_pred HHHHHHHh---ccCCCcccc----------c----HHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhh
Confidence 44444432 222222110 0 000000000000000000000011111111111111100111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHH-HhC-CChhHHHHH-HHHHHHHHhhcccchh-hhhceEE--EcCCCChHHH
Q psy8267 262 -AVVMAVAQLFHHLAPRREVAIIAKALVR-LLR-SSREVQTVV-LTTIASLAVKRRALFV-PYLKSFY--VRSSDPTHVK 334 (645)
Q Consensus 262 -aVv~ea~~~i~~l~~~~~~~~~~~~L~~-lL~-s~~niryv~-L~~l~~l~~~~p~~~~-~~~~~f~--~l~~d~~~Ir 334 (645)
-|.++++...+.+-..-...+++ -+.+ ..+ .+.++|+++ +..|..++..+|.++. .|...+. ....-++
T Consensus 1015 ~~v~~~~v~~~~~L~~~cl~~~i~-ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t--- 1090 (1692)
T KOG1020|consen 1015 KPVALAKVTHVLNLLTHCLVEKIS-EVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKAST--- 1090 (1692)
T ss_pred hHHHHhhcchHHHHHHHHHHHHHH-hhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccc---
Confidence 11111111111110000000010 0111 122 456777764 5667778888998887 6665553 2211011
Q ss_pred HHHHHHHHHccC--------cCCHHH-HH----HHHHHhhccccHHHHHHHHHHHHHHHhhcc---ccHHHHHHHHHHhh
Q psy8267 335 TLKLELLTTLAS--------ETSIAS-IL----REFQTYISSVDKAFVAATVQAIGKCAANIA---QVTDTCLTGLVSLL 398 (645)
Q Consensus 335 ~~kLdlL~~L~~--------~~Nv~~-Il----~EL~~yl~~~d~~~~~~~i~~I~~la~k~~---~~~~~~v~~ll~LL 398 (645)
..+-+.++.++. -.|... .+ +.|+.-+......-+.++|-.+|.++.|+- .....|+...++.|
T Consensus 1091 ~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~l 1170 (1692)
T KOG1020|consen 1091 IEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLL 1170 (1692)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 011222222111 011111 11 223333334456667788899999998753 45567888888877
Q ss_pred ccCChh-------hHHHH----HHHHHHHhhc--C-------C------cchHHHHHHHHHhhccCChHHHHHHHHHHHh
Q psy8267 399 SYSDEA-------VVAES----VVVIKNLLQT--Q-------P------EAYTDIIRHMVRLSDSITVPTARAAILWLLG 452 (645)
Q Consensus 399 ~~~~~~-------v~~e~----v~~i~~il~~--~-------p------~~~~~~i~~L~~~l~~i~~~~ak~~~iwilG 452 (645)
...... +.... +..+--+.|- . + +.-...+..++.++...+..+.|.-++--+|
T Consensus 1171 e~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg 1250 (1692)
T KOG1020|consen 1171 EVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLG 1250 (1692)
T ss_pred HHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 641111 11111 2222222330 0 0 0112233445555555556667766677788
Q ss_pred cccccCCC--chHHHHHHHHHhhcCCch-HH-HHHHHHhh
Q psy8267 453 EYSHLVPA--LGPDVLRKAAITFVNEED-IV-KLQVLNLA 488 (645)
Q Consensus 453 Ey~~~i~~--~~~diLr~l~~~f~~e~~-~v-k~~iL~~~ 488 (645)
-+|-.-+. ..++++..+.+-+.+... +. |.++|...
T Consensus 1251 ~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~ 1290 (1692)
T KOG1020|consen 1251 FICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNL 1290 (1692)
T ss_pred HHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 87766555 367888887777776554 33 45554443
No 43
>KOG1078|consensus
Probab=97.66 E-value=0.056 Score=61.91 Aligned_cols=360 Identities=15% Similarity=0.140 Sum_probs=226.3
Q ss_pred cCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCC--CChHH
Q psy8267 29 SKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLD--MSPYV 106 (645)
Q Consensus 29 s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d--~~pyV 106 (645)
+++....-..-+---+|+..+.|...-=.|-+|-...+.|.+++.-||-.+-.|+-.+=. .+...+.+.... .+|+-
T Consensus 146 d~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~drl-a~sklv~~~~~~~~~~~~A 224 (865)
T KOG1078|consen 146 DKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRL-AVSKLVQKFTRGSLKSPLA 224 (865)
T ss_pred ccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHccccccchhH
Confidence 334333333333333444455555555566777777777777777777777777542210 111111111111 13332
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHH
Q psy8267 107 RKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILN 186 (645)
Q Consensus 107 RK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~ 186 (645)
+---+-...++..-++.....+.+.+.++|..++-+|..-|..++..+.......+.+.+..|--.+..+.+-++-..++
T Consensus 225 ~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvR 304 (865)
T KOG1078|consen 225 VCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVR 304 (865)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHH
Confidence 22222222334444455556788899999999999999988777776643333333343444444456677777778888
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHH
Q psy8267 187 MLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMA 266 (645)
Q Consensus 187 lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~e 266 (645)
.|.+.+-. .|.... .-+.|+. ++....|.++-.=
T Consensus 305 tLnkvAm~---~P~~v~------------------------------------~cN~elE-------~lItd~NrsIat~ 338 (865)
T KOG1078|consen 305 TLNKVAMK---HPQAVT------------------------------------VCNLDLE-------SLITDSNRSIATL 338 (865)
T ss_pred HHHHHHHh---CCcccc------------------------------------ccchhHH-------hhhcccccchhHH
Confidence 88777643 253211 0122332 4456677777766
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccc---hhhhhceEEEcCCCChHHHHHHHHHHH
Q psy8267 267 VAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRAL---FVPYLKSFYVRSSDPTHVKTLKLELLT 342 (645)
Q Consensus 267 a~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~---~~~~~~~f~~l~~d~~~Ir~~kLdlL~ 342 (645)
|+-+.+.-+..+.+..+.+....|++ =+.|-+.++.+++..++.++|.. ...++..+. +.+---.-|+-..|.+.
T Consensus 339 AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L-r~eGg~e~K~aivd~Ii 417 (865)
T KOG1078|consen 339 AITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML-REEGGFEFKRAIVDAII 417 (865)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH-HhccCchHHHHHHHHHH
Confidence 77777777776677788888888885 34577889999999999988853 222222222 22333456667777777
Q ss_pred Hcc--CcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhh
Q psy8267 343 TLA--SETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIA--QVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQ 418 (645)
Q Consensus 343 ~L~--~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~--~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~ 418 (645)
.+. +++.-+..+..|-+|+.++. |...+++-++.++.--| ...+.|+..+...+-..+..+..+++..+-++.-
T Consensus 418 ~iie~~pdsKe~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~ 495 (865)
T KOG1078|consen 418 DIIEENPDSKERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGA 495 (865)
T ss_pred HHHHhCcchhhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 665 45666778889999988654 67777777777776544 4456788888777777777899999999999998
Q ss_pred cCCcchHHHHHHHHHhhccC
Q psy8267 419 TQPEAYTDIIRHMVRLSDSI 438 (645)
Q Consensus 419 ~~p~~~~~~i~~L~~~l~~i 438 (645)
+++..+..+...|-+.+.+-
T Consensus 496 ~~~~l~~sI~vllkRc~~D~ 515 (865)
T KOG1078|consen 496 QDVVLLPSILVLLKRCLNDS 515 (865)
T ss_pred CCCCccccHHHHHHHHhcCc
Confidence 88888888887777777553
No 44
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=97.60 E-value=0.00021 Score=64.22 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=61.6
Q ss_pred ceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCc-ccCCCCceEEEEeEEecCCCC
Q psy8267 521 LSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIA-SIDPGLAVEVSLGLNLNDSTQ 599 (645)
Q Consensus 521 l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~ 599 (645)
+++.+.+.+. -+++.+++.++|+|+++.+|++|++.... |.+++++-.+.-+ +++|++++++.+.+.-..+..
T Consensus 11 l~I~~~~~~~---~~~~~~~i~~~f~N~s~~~it~f~~q~av---pk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~~~~~~ 84 (115)
T PF02883_consen 11 LQIGFKSEKS---PNPNQGRIKLTFGNKSSQPITNFSFQAAV---PKSFKLQLQPPSSSTIPPGQQITQVIKVENSPFSE 84 (115)
T ss_dssp EEEEEEEEEC---CETTEEEEEEEEEE-SSS-BEEEEEEEEE---BTTSEEEEEESS-SSB-TTTEEEEEEEEEESS-BS
T ss_pred EEEEEEEEec---CCCCEEEEEEEEEECCCCCcceEEEEEEe---ccccEEEEeCCCCCeeCCCCeEEEEEEEEEeeccc
Confidence 6666666541 17889999999999999999999997742 2366666444433 999999999999888733444
Q ss_pred ------CCccEEeecccCCCCCccceEee
Q psy8267 600 ------PLSPRLVWGVEGEDGLSAPLKLS 622 (645)
Q Consensus 600 ------~~~~~~~~~~~~~~~~~~~~~l~ 622 (645)
.+.++++|.+ ||.....++
T Consensus 85 ~~~~~l~~~~~vsy~~----~g~~~~~~~ 109 (115)
T PF02883_consen 85 PTPKPLKPRLRVSYNV----GGQPVLELG 109 (115)
T ss_dssp TTSSTTEEEEEEEEEE----TTEEEEEEE
T ss_pred CCCCCcCeEEEEEEEE----CCEEEEEEe
Confidence 4477888876 444444443
No 45
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.56 E-value=0.016 Score=67.41 Aligned_cols=341 Identities=19% Similarity=0.239 Sum_probs=198.9
Q ss_pred cCCCCHHHHHHHHHHHhCCCccc------cHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHH
Q psy8267 64 LKDPNQLIRASALRVLSSIRVPM------IIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVI 132 (645)
Q Consensus 64 L~~~N~~iralALr~ls~I~~~e------i~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l 132 (645)
+...++++| .|++.|.++.... .-..+...+.+++...+..+.=.|+.++-|+- ..++-. .+.++.|
T Consensus 259 ~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL 336 (708)
T PF05804_consen 259 IRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVEKL 336 (708)
T ss_pred HHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHH
Confidence 345566777 5567777753221 11223344556777777766655555555543 444422 3578889
Q ss_pred HHhhcCCChhHHHHHHHHHHHHChhh---hhhh-HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q psy8267 133 EKLLQDKTTLVVGSAVMAFEEVCPER---IDMI-HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSE 208 (645)
Q Consensus 133 ~~lL~D~~~~V~~sav~~l~ei~~~~---~~li-~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~ 208 (645)
.+++..++..++-.|+.++..+.-+. ..++ .+.+.+|+..|.+. ++. ...+.+|...... ... ..
T Consensus 337 ~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~-~~~-~val~iLy~LS~d----d~~-----r~ 405 (708)
T PF05804_consen 337 LKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP-NFR-EVALKILYNLSMD----DEA-----RS 405 (708)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC-chH-HHHHHHHHHhccC----Hhh-----HH
Confidence 99999999888889999999887432 1222 12456788888764 333 3466766555421 100 00
Q ss_pred CCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHH-HHHHH---
Q psy8267 209 DDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRRE-VAIIA--- 284 (645)
Q Consensus 209 ~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~-~~~~~--- 284 (645)
++ . + -| -...+++ -++.+.+..|-.+++.+.++++.... ...+.
T Consensus 406 ~f------------~---------------~-Td-cIp~L~~---~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~ 453 (708)
T PF05804_consen 406 MF------------A---------------Y-TD-CIPQLMQ---MLLENSEEEVQLELIALLINLALNKRNAQLMCEGN 453 (708)
T ss_pred HH------------h---------------h-cc-hHHHHHH---HHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 00 0 0 01 0122222 23445566666777777777664322 11111
Q ss_pred --HHHHHH-hC-CChhHHHHHHHHHHHHHhhcc---cchhhhhceEE--EcCCCChHHHHHHHHHHHHccCc-CCHHHHH
Q psy8267 285 --KALVRL-LR-SSREVQTVVLTTIASLAVKRR---ALFVPYLKSFY--VRSSDPTHVKTLKLELLTTLASE-TSIASIL 354 (645)
Q Consensus 285 --~~L~~l-L~-s~~niryv~L~~l~~l~~~~p---~~~~~~~~~f~--~l~~d~~~Ir~~kLdlL~~L~~~-~Nv~~Il 354 (645)
+.|++. ++ ++ -+.+..+..+++..+ ..|.+++..+. +...|+.......|-+|.+|..+ -++..++
T Consensus 454 gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll 529 (708)
T PF05804_consen 454 GLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLL 529 (708)
T ss_pred cHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHH
Confidence 222222 22 22 233344444555432 35666776653 45566788999999999988854 4888888
Q ss_pred HH--HHHhhcc------ccHHHHHHHHHHHHHHHhhccccH-----HHHHHHHHHhhccCC--hhhHHHHHHHHHHHhhc
Q psy8267 355 RE--FQTYISS------VDKAFVAATVQAIGKCAANIAQVT-----DTCLTGLVSLLSYSD--EAVVAESVVVIKNLLQT 419 (645)
Q Consensus 355 ~E--L~~yl~~------~d~~~~~~~i~~I~~la~k~~~~~-----~~~v~~ll~LL~~~~--~~v~~e~v~~i~~il~~ 419 (645)
++ |..|+.+ .++++.-++|.-+|.+|. .+..+ .-++..++.||.... +.++-+++.++.+++..
T Consensus 530 ~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h 608 (708)
T PF05804_consen 530 QEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH 608 (708)
T ss_pred HhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC
Confidence 75 5555543 467899999999998774 22222 345788999997653 56777788888888864
Q ss_pred CCcchHHH------HHHHHHhhccCChHHHH---HHHHHHHhcccc
Q psy8267 420 QPEAYTDI------IRHMVRLSDSITVPTAR---AAILWLLGEYSH 456 (645)
Q Consensus 420 ~p~~~~~~------i~~L~~~l~~i~~~~ak---~~~iwilGEy~~ 456 (645)
++.++.+ +..+.+++.+- .++++ -.++=+++||-.
T Consensus 609 -~~tr~~ll~~~~~~~ylidL~~d~-N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 609 -EETREVLLKETEIPAYLIDLMHDK-NAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred -hHHHHHHHhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCH
Confidence 5555444 34455555543 33333 356788888865
No 46
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.11 Score=57.72 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=60.4
Q ss_pred HHHHHhcccCchHHH-HHHHHHHHHcCCCCHHHHHHHHHHHhCCCc-------cccHHHHHHHHHhhcCCCChHHHHHHH
Q psy8267 40 VYLARYAEEQQDLAL-LSISTFQRALKDPNQLIRASALRVLSSIRV-------PMIIPIVMLAIKDSSLDMSPYVRKTAA 111 (645)
Q Consensus 40 l~l~~~~~~~~dl~l-L~iNsl~kDL~~~N~~iralALr~ls~I~~-------~ei~~~l~~~I~~~l~d~~pyVRK~Aa 111 (645)
-.+..|++...|..+ =+---+.+.++++|-..|-.|.-++|++.. .-+++...+.|....+|+.-+|+.++|
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA 429 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA 429 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence 344555555555433 233345677889999999999999999842 346777888888899999999999999
Q ss_pred HHHHHHhhc
Q psy8267 112 HAIPKLYSL 120 (645)
Q Consensus 112 lal~kl~~~ 120 (645)
-|++++-..
T Consensus 430 wc~g~iad~ 438 (858)
T COG5215 430 WCFGAIADH 438 (858)
T ss_pred HHHHHHHHH
Confidence 998887653
No 47
>KOG1824|consensus
Probab=97.54 E-value=0.099 Score=61.03 Aligned_cols=327 Identities=17% Similarity=0.162 Sum_probs=176.4
Q ss_pred hHHHHHHhccCCch-----hHHHHHHHHHHhc----ccCchHHHHHHHHHHHHcCC--CCHHHHHHHHHHHhCCCc---c
Q psy8267 20 FPAVVKNVVSKNIE-----VKKLVYVYLARYA----EEQQDLALLSISTFQRALKD--PNQLIRASALRVLSSIRV---P 85 (645)
Q Consensus 20 f~~vvkli~s~~~~-----~KkL~Yl~l~~~~----~~~~dl~lL~iNsl~kDL~~--~N~~iralALr~ls~I~~---~ 85 (645)
|.....+..++.++ +-|=+|..+-..+ ...|+..--.+-.+.+|+++ .|.-+|-+|+-++|.++- .
T Consensus 773 y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~ 852 (1233)
T KOG1824|consen 773 YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL 852 (1233)
T ss_pred HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC
Confidence 66666666666544 2333343332221 12344444445577888884 567899999999999863 2
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC-hhhhhhhHH
Q psy8267 86 MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC-PERIDMIHK 164 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~-~~~~~li~~ 164 (645)
.=.+.+-.-|.+++++++..||+.|+.|++.+-.-+ .+.+.+.|...... +|-=..=-+.+|.|+. ....+.+.+
T Consensus 853 s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn---l~~yLpfil~qi~s-qpk~QyLLLhSlkevi~~~svd~~~~ 928 (1233)
T KOG1824|consen 853 SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN---LPKYLPFILEQIES-QPKRQYLLLHSLKEVIVSASVDGLKP 928 (1233)
T ss_pred CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc---hHhHHHHHHHHHhc-chHhHHHHHHHHHHHHHHhccchhhh
Confidence 223345556789999999999999999999875422 23344444433322 1111111223333332 112223333
Q ss_pred HHHHHHHHhcC----CCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccc
Q psy8267 165 SYRKLCNLLVD----VDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240 (645)
Q Consensus 165 ~~~kL~~~L~~----~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~ 240 (645)
...++..+|-. ..+...-.+=+.|.+.+- .+|.
T Consensus 929 ~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l---~epe---------------------------------------- 965 (1233)
T KOG1824|consen 929 YVEKIWALLFKHCECAEEGTRNVVAECLGKLVL---IEPE---------------------------------------- 965 (1233)
T ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh---CChH----------------------------------------
Confidence 33333333321 123333333344444432 1231
Q ss_pred cChhHHHHHHhhhhhhcCCCh---HHHHHHHHHHHhcCCh---HHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcc
Q psy8267 241 LDPDHRLLLKNAKPLLQSRNA---AVVMAVAQLFHHLAPR---REVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRR 313 (645)
Q Consensus 241 ~d~d~~~ll~~~~~ll~s~n~---aVv~ea~~~i~~l~~~---~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p 313 (645)
.++..+...+.|..+ +.+..|++.-+...|+ ..+++.+.....+++ .+.++|-++|..+...+...|
T Consensus 966 ------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp 1039 (1233)
T KOG1824|consen 966 ------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP 1039 (1233)
T ss_pred ------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH
Confidence 133333333444333 4555566655544443 234444444455554 678999999999999988777
Q ss_pred cchhhh------------------hceE----EE-cCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhcc--cc-HH
Q psy8267 314 ALFVPY------------------LKSF----YV-RSSDPTHVKTLKLELLTTLASETSIASILREFQTYISS--VD-KA 367 (645)
Q Consensus 314 ~~~~~~------------------~~~f----~~-l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~--~d-~~ 367 (645)
+++..- ++.. |- --||-..+|+.+-|-+|.|.+.-==..=+.+++.++.+ .| .+
T Consensus 1040 slIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dhyd 1119 (1233)
T KOG1824|consen 1040 SLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDHYD 1119 (1233)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchhhH
Confidence 643211 1111 11 13566899999999999987642212223344444433 22 44
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHhhc
Q psy8267 368 FVAATVQAIGKCAANIAQVTDTCLTGLVSLLS 399 (645)
Q Consensus 368 ~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~ 399 (645)
++--.-.-+.++|..-|.....-+|.+++=|.
T Consensus 1120 iKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr 1151 (1233)
T KOG1824|consen 1120 IKMLTFLMLARLADLCPSAVLQRLDRLVEPLR 1151 (1233)
T ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 55555566677887777776666666665554
No 48
>KOG1241|consensus
Probab=97.54 E-value=0.037 Score=63.12 Aligned_cols=403 Identities=18% Similarity=0.217 Sum_probs=231.4
Q ss_pred cchHHHHHHhccC-------CchhHHHHHHHHHHhcccCch-HHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC------
Q psy8267 18 DLFPAVVKNVVSK-------NIEVKKLVYVYLARYAEEQQD-LALLSISTFQRALKDPNQLIRASALRVLSSIR------ 83 (645)
Q Consensus 18 ~lf~~vvkli~s~-------~~~~KkL~Yl~l~~~~~~~~d-l~lL~iNsl~kDL~~~N~~iralALr~ls~I~------ 83 (645)
.+.|..++++... +-..-|-+-..|..|++...| ..-.+.--+..-+++||=..|-.|.-+.|+|-
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchh
Confidence 4455666666531 234566677777788876554 44477777778999999999999999999983
Q ss_pred -ccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH---HHH---HHHHHHhhcCCChhHHHHHHHHHHHHC-
Q psy8267 84 -VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK---EEL---VLVIEKLLQDKTTLVVGSAVMAFEEVC- 155 (645)
Q Consensus 84 -~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~---~~~---~~~l~~lL~D~~~~V~~sav~~l~ei~- 155 (645)
...+++...+.+.+++.|++-.||.+|+-++.|+....|+.. ..+ +..+..-|.| .|.|..++.-+|..+.
T Consensus 399 ~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAE 477 (859)
T ss_pred hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHH
Confidence 345777888999999999999999999999999999988754 223 3333444455 6788888777766543
Q ss_pred ------hhhh--hhhHHHHHHHHHHhcCC-------CchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8267 156 ------PERI--DMIHKSYRKLCNLLVDV-------DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKP 220 (645)
Q Consensus 156 ------~~~~--~li~~~~~kL~~~L~~~-------~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~ 220 (645)
+++. +...+.|..+++.|... ..-+.+..-+.|....+. .|..
T Consensus 478 a~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~---st~~------------------- 535 (859)
T KOG1241|consen 478 AAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN---STDD------------------- 535 (859)
T ss_pred HHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---CcHH-------------------
Confidence 2231 12224444444444221 122233333334333321 0110
Q ss_pred CcCCcccccccccccccccccChhHHHHHHhhhhhhc-----CCC-------hHHHHHHHHHHHhcCCh---HHHHHHHH
Q psy8267 221 FYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQ-----SRN-------AAVVMAVAQLFHHLAPR---REVAIIAK 285 (645)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~-----s~n-------~aVv~ea~~~i~~l~~~---~~~~~~~~ 285 (645)
.|+.- .... --++..+...++ ... -+++..+...++..-++ +....+-.
T Consensus 536 vy~~v------------~~~~----l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~ 599 (859)
T KOG1241|consen 536 VYPMV------------QKLT----LVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMG 599 (859)
T ss_pred HHHHH------------HHHH----HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHH
Confidence 00000 0000 000000000000 000 13444455555433221 22345566
Q ss_pred HHHHHhCC--ChhHHHHHHHHHHHHHhhcccchhhhhceEE--E---c-CCCChHHHHHHHHHHHHccCc--CCH----H
Q psy8267 286 ALVRLLRS--SREVQTVVLTTIASLAVKRRALFVPYLKSFY--V---R-SSDPTHVKTLKLELLTTLASE--TSI----A 351 (645)
Q Consensus 286 ~L~~lL~s--~~niryv~L~~l~~l~~~~p~~~~~~~~~f~--~---l-~~d~~~Ir~~kLdlL~~L~~~--~Nv----~ 351 (645)
.+.|++.+ ..-+.--++-++..++..-..-|.+|...|. . + .-++..|-.-+.-+...+|+. +++ +
T Consensus 600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d 679 (859)
T KOG1241|consen 600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCD 679 (859)
T ss_pred HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 67777754 2234444445555555444455666666662 2 2 345567888888888888874 333 3
Q ss_pred HHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCC------------hh---hHHHHH---H
Q psy8267 352 SILREFQTYISS--VDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSD------------EA---VVAESV---V 411 (645)
Q Consensus 352 ~Il~EL~~yl~~--~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~------------~~---v~~e~v---~ 411 (645)
.+...|...+.+ .+.+++..++...|.+|..+....+.|++..+.++..+. +| +...++ .
T Consensus 680 ~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~ 759 (859)
T KOG1241|consen 680 ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYT 759 (859)
T ss_pred HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 455666666665 467788899999999999999999999999988886432 12 122222 2
Q ss_pred HHHHHhhcCC--cchHHHHHHHHHhhccCC----h-HHHHHHHHHHHhcccccCC
Q psy8267 412 VIKNLLQTQP--EAYTDIIRHMVRLSDSIT----V-PTARAAILWLLGEYSHLVP 459 (645)
Q Consensus 412 ~i~~il~~~p--~~~~~~i~~L~~~l~~i~----~-~~ak~~~iwilGEy~~~i~ 459 (645)
.|.+=+...+ ..-...+.++..+++.|. . ..+-++++-+||.-+...+
T Consensus 760 gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg 814 (859)
T KOG1241|consen 760 GIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFG 814 (859)
T ss_pred HHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcc
Confidence 2333333322 223345666666666552 1 2245566788887655443
No 49
>KOG2259|consensus
Probab=97.41 E-value=0.041 Score=61.87 Aligned_cols=342 Identities=16% Similarity=0.124 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHH-HH-HhhcCCCChHHHHHHHHHHHHHhhc---CchhHH
Q psy8267 52 LALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVML-AI-KDSSLDMSPYVRKTAAHAIPKLYSL---DPEQKE 126 (645)
Q Consensus 52 l~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~-~I-~~~l~d~~pyVRK~Aalal~kl~~~---~p~~~~ 126 (645)
++...++.+++...+.-=..--.-|.+.+.-+.++.+....- .+ +...++.+..+|-++....+-+-.. .+...+
T Consensus 118 I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~ 197 (823)
T KOG2259|consen 118 ISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDRE 197 (823)
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHH
Confidence 455677777766555432222334455555454444444321 11 2223344555555554443333221 112234
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCC
Q psy8267 127 ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDS 206 (645)
Q Consensus 127 ~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s 206 (645)
.....+..+-+|.|+.|..+|+.++..+.. ...+-..+|.+.++.+.|-++-.....++++.-|+... |-..+..+
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~---p~~~e~e~ 273 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC---PAPLERES 273 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC---CCcccchh
Confidence 555667888999999999999999887754 33444446889999999877777777888888887553 31111000
Q ss_pred CCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChH-H-H-HHH
Q psy8267 207 SEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRR-E-V-AII 283 (645)
Q Consensus 207 ~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~-~-~-~~~ 283 (645)
.+ ....|.. ...+-.-+...+-.|..+|++++..+..-+ + + ..+
T Consensus 274 ~e-----------------------------~kl~D~a----F~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTL 320 (823)
T KOG2259|consen 274 EE-----------------------------EKLKDAA----FSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTL 320 (823)
T ss_pred hh-----------------------------hhhHHHH----HHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHH
Confidence 00 0011111 111112234444566666766665443211 1 1 112
Q ss_pred HHHHH---------------------------------------------------HHhC---CC-hhHHHHHHHHHHHH
Q psy8267 284 AKALV---------------------------------------------------RLLR---SS-REVQTVVLTTIASL 308 (645)
Q Consensus 284 ~~~L~---------------------------------------------------~lL~---s~-~niryv~L~~l~~l 308 (645)
-+.+. .|+. .+ -++|-.+..++.+|
T Consensus 321 dKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~L 400 (823)
T KOG2259|consen 321 DKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSL 400 (823)
T ss_pred HHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHH
Confidence 22222 2221 11 37999999999999
Q ss_pred HhhcccchhhhhceEE--EcCCCChHHHHHHHHHHHHccCcCCH-HHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccc
Q psy8267 309 AVKRRALFVPYLKSFY--VRSSDPTHVKTLKLELLTTLASETSI-ASILREFQTYISSVDKAFVAATVQAIGKCAANIAQ 385 (645)
Q Consensus 309 ~~~~p~~~~~~~~~f~--~l~~d~~~Ir~~kLdlL~~L~~~~Nv-~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~ 385 (645)
+..+|+.-..-+. |. -.+|+...||.+++.-|..+.+.-.+ ++.++.+++-+.+...++|+++-.-++. .++++
T Consensus 401 a~ssP~FA~~ald-fLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~--~~~~d 477 (823)
T KOG2259|consen 401 ATSSPGFAVRALD-FLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKN--ARVSD 477 (823)
T ss_pred HcCCCCcHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCc
Confidence 9999975544332 32 24666688999999999998876333 3466677777777788888776554432 24443
Q ss_pred --cHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHh
Q psy8267 386 --VTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRL 434 (645)
Q Consensus 386 --~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~ 434 (645)
....|+..+++-|..- +.=.+|+|..+.+|-++++.+-..+..++.+.
T Consensus 478 ~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~lv~s~m~rfl~k 527 (823)
T KOG2259|consen 478 LECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRRLVLSNMGRFLEK 527 (823)
T ss_pred HHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChhhHHHHHHHHHHh
Confidence 3466777777666542 12367899999999999998877777776643
No 50
>KOG0213|consensus
Probab=97.36 E-value=0.074 Score=60.51 Aligned_cols=255 Identities=16% Similarity=0.131 Sum_probs=128.2
Q ss_pred CCCCcccchHHHHH---------HhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHH----
Q psy8267 12 KGRDASDLFPAVVK---------NVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRV---- 78 (645)
Q Consensus 12 ~G~dvs~lf~~vvk---------li~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~---- 78 (645)
-|.+-.+...+++- -++...-.-|+++|...+.-.+--.+ -.|+-+..|+.|.+|..|-++..+
T Consensus 667 ~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~---~~v~R~v~~lkde~e~yrkm~~etv~ri 743 (1172)
T KOG0213|consen 667 DGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD---PIVSRVVLDLKDEPEQYRKMVAETVSRI 743 (1172)
T ss_pred cCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch---HHHHHHhhhhccccHHHHHHHHHHHHHH
Confidence 56665555444433 34556667899999998887775544 356778889999999777665544
Q ss_pred HhCCCcccc----HHHHHHHHHhhcCCCChHHH--HHHHHHHHHHhh-cCchhHHHHHHHHHHhhcCCChhHHHHHHHHH
Q psy8267 79 LSSIRVPMI----IPIVMLAIKDSSLDMSPYVR--KTAAHAIPKLYS-LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAF 151 (645)
Q Consensus 79 ls~I~~~ei----~~~l~~~I~~~l~d~~pyVR--K~Aalal~kl~~-~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l 151 (645)
+++++..++ .+.++..|.-++.+...-+. =...-++.+-+- ...-..+++...+...|+.+.+.|.-.|+-++
T Consensus 744 ~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadli 823 (1172)
T KOG0213|consen 744 VGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLI 823 (1172)
T ss_pred HhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 455554433 33344444444443322111 111111111111 11112344555566666777776666555444
Q ss_pred HHHCh--hhh---hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcc
Q psy8267 152 EEVCP--ERI---DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDET 226 (645)
Q Consensus 152 ~ei~~--~~~---~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~ 226 (645)
..+.+ +.. .++...=.-|...|..-.|=.--.||..+...... . + +
T Consensus 824 s~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nv-----i--g---------m------------- 874 (1172)
T KOG0213|consen 824 SSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNV-----I--G---------M------------- 874 (1172)
T ss_pred HHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHh-----c--c---------c-------------
Confidence 43332 000 11111111133333333333333344444332210 0 0 0
Q ss_pred cccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcC---Ch----HHHHHHHHHHHHHhCC-ChhHH
Q psy8267 227 TRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLA---PR----REVAIIAKALVRLLRS-SREVQ 298 (645)
Q Consensus 227 ~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~---~~----~~~~~~~~~L~~lL~s-~~nir 298 (645)
..+-|..+.+|.++.|.|+++..-|.-.|+.++..++ |. .+.-.++=-|+.+|.+ .-++|
T Consensus 875 ------------~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iR 942 (1172)
T KOG0213|consen 875 ------------TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIR 942 (1172)
T ss_pred ------------cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012233457777788888888888888888776553 21 1222344445555543 34677
Q ss_pred HHHHHHHHHHHh
Q psy8267 299 TVVLTTIASLAV 310 (645)
Q Consensus 299 yv~L~~l~~l~~ 310 (645)
-.+..++.-++.
T Consensus 943 Raa~nTfG~Iak 954 (1172)
T KOG0213|consen 943 RAAVNTFGYIAK 954 (1172)
T ss_pred HHHHhhhhHHHH
Confidence 666666665553
No 51
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.36 E-value=0.035 Score=61.00 Aligned_cols=261 Identities=16% Similarity=0.060 Sum_probs=159.3
Q ss_pred HcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCCh
Q psy8267 63 ALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSS-LDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTT 141 (645)
Q Consensus 63 DL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l-~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~ 141 (645)
|+..=++-.++- |..|.-.+ +...+.+ ...+ .|.++-|+..|+.++... .+|. .++.+...|.|.++
T Consensus 33 ~la~ldeRL~Ah-LdgL~~~G-~~a~~~L----~~aL~~d~~~ev~~~aa~al~~~--~~~~----~~~~L~~~L~d~~~ 100 (410)
T TIGR02270 33 DLAELEERLLAH-VDGLVLAG-KAATELL----VSALAEADEPGRVACAALALLAQ--EDAL----DLRSVLAVLQAGPE 100 (410)
T ss_pred HHHhHHHHHHHH-HHHHHHhh-HhHHHHH----HHHHhhCCChhHHHHHHHHHhcc--CChH----HHHHHHHHhcCCCH
Confidence 333334445554 66666555 4444443 4455 577889988887776533 1222 25667788899999
Q ss_pred hHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8267 142 LVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPF 221 (645)
Q Consensus 142 ~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f 221 (645)
+|..+++.+|.++..... ...|+..|.+.+|+.+..++..+..-.. +|
T Consensus 101 ~vr~aaa~ALg~i~~~~a------~~~L~~~L~~~~p~vR~aal~al~~r~~----~~---------------------- 148 (410)
T TIGR02270 101 GLCAGIQAALGWLGGRQA------EPWLEPLLAASEPPGRAIGLAALGAHRH----DP---------------------- 148 (410)
T ss_pred HHHHHHHHHHhcCCchHH------HHHHHHHhcCCChHHHHHHHHHHHhhcc----Ch----------------------
Confidence 999999999988865444 3447778888899988888877654220 11
Q ss_pred cCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHH
Q psy8267 222 YDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTV 300 (645)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv 300 (645)
...+.+.+++.++.|.-+|++++..+.... ....|...+. .++++|..
T Consensus 149 ---------------------------~~~L~~~L~d~d~~Vra~A~raLG~l~~~~----a~~~L~~al~d~~~~VR~a 197 (410)
T TIGR02270 149 ---------------------------GPALEAALTHEDALVRAAALRALGELPRRL----SESTLRLYLRDSDPEVRFA 197 (410)
T ss_pred ---------------------------HHHHHHHhcCCCHHHHHHHHHHHHhhcccc----chHHHHHHHcCCCHHHHHH
Confidence 112246678899999999999998876542 3334555564 77899999
Q ss_pred HHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy8267 301 VLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCA 380 (645)
Q Consensus 301 ~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la 380 (645)
++..+..+.. +..... +..|+- ......+.....++-...++ .++.-|...+++. ..++.++.++|.+.
T Consensus 198 A~~al~~lG~--~~A~~~-l~~~~~--~~g~~~~~~l~~~lal~~~~----~a~~~L~~ll~d~--~vr~~a~~AlG~lg 266 (410)
T TIGR02270 198 ALEAGLLAGS--RLAWGV-CRRFQV--LEGGPHRQRLLVLLAVAGGP----DAQAWLRELLQAA--ATRREALRAVGLVG 266 (410)
T ss_pred HHHHHHHcCC--HhHHHH-HHHHHh--ccCccHHHHHHHHHHhCCch----hHHHHHHHHhcCh--hhHHHHHHHHHHcC
Confidence 9999987754 433322 111221 22233444444444444333 5666666666553 38889999999776
Q ss_pred hhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHh
Q psy8267 381 ANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLL 417 (645)
Q Consensus 381 ~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il 417 (645)
. |. .+..|++.+.. +.+..-+-..+.+|.
T Consensus 267 ~--p~----av~~L~~~l~d--~~~aR~A~eA~~~It 295 (410)
T TIGR02270 267 D--VE----AAPWCLEAMRE--PPWARLAGEAFSLIT 295 (410)
T ss_pred C--cc----hHHHHHHHhcC--cHHHHHHHHHHHHhh
Confidence 3 33 44555555544 234444444455443
No 52
>KOG1061|consensus
Probab=97.31 E-value=0.039 Score=63.19 Aligned_cols=138 Identities=20% Similarity=0.233 Sum_probs=79.5
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchHHH--HHHHHHHHHcCCCCHHHHHHHHHHHhCCC-------ccccHH
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLAL--LSISTFQRALKDPNQLIRASALRVLSSIR-------VPMIIP 89 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~l--L~iNsl~kDL~~~N~~iralALr~ls~I~-------~~ei~~ 89 (645)
++..+.++....+...+|-+-+.+..+.+-++++.. =.++.+..-+.|.||.+.|.|++++..|. ..++..
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~ 201 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNP 201 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccH
Confidence 455566666677777777766666666555544311 12334444446788888888888887663 233444
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHCh
Q psy8267 90 IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 90 ~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~ 156 (645)
.++......++.-...=+=.-.-++.+-...++.-..++.+++...|...++.|+.+++.++....+
T Consensus 202 ~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 202 QLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 4444444444433333222222233332223332345677777888888888998888888776554
No 53
>KOG0213|consensus
Probab=97.29 E-value=0.078 Score=60.35 Aligned_cols=100 Identities=22% Similarity=0.264 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhcCch----hHHHHH
Q psy8267 55 LSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDM-SPYVRKTAAHAIPKLYSLDPE----QKEELV 129 (645)
Q Consensus 55 L~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~-~pyVRK~Aalal~kl~~~~p~----~~~~~~ 129 (645)
-++.+++-|..+.+|++|--.-|+.+-+...-=++.+.+.++....++ |+--|.+.+-++.++.-+.-- .+..+.
T Consensus 476 ~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv 555 (1172)
T KOG0213|consen 476 TMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLV 555 (1172)
T ss_pred HHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHH
Confidence 356789999999999999766666654332222344555556666555 777777777777666543321 124577
Q ss_pred HHHHHhhcCCChhHHH---HHHHHHHHH
Q psy8267 130 LVIEKLLQDKTTLVVG---SAVMAFEEV 154 (645)
Q Consensus 130 ~~l~~lL~D~~~~V~~---sav~~l~ei 154 (645)
+.|.++|.|++.-|.. .|++++.|.
T Consensus 556 ~ii~~gl~De~qkVR~itAlalsalaea 583 (1172)
T KOG0213|consen 556 KIIEHGLKDEQQKVRTITALALSALAEA 583 (1172)
T ss_pred HHHHHhhcccchhhhhHHHHHHHHHHHh
Confidence 7888888887755544 344444443
No 54
>KOG0166|consensus
Probab=97.28 E-value=0.0055 Score=67.95 Aligned_cols=190 Identities=18% Similarity=0.218 Sum_probs=145.1
Q ss_pred HHHHHHHhCCCC-------cccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHH-----HHHHHcCCCCHHH
Q psy8267 4 GTCCYMMAKGRD-------ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSIS-----TFQRALKDPNQLI 71 (645)
Q Consensus 4 kkli~l~~~G~d-------vs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iN-----sl~kDL~~~N~~i 71 (645)
...+..+.+|.+ ++..++...+++.++|.++..-.+.+++.+.+..+|..-++++ .+.+-|.++.+-+
T Consensus 216 tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v 295 (514)
T KOG0166|consen 216 TWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKV 295 (514)
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccc
Confidence 346677889985 5668899999999999999999999999888776665444443 4677889999999
Q ss_pred HHHHHHHHhCCC--ccccHHHH-----HHHHHhhcC-CCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcC
Q psy8267 72 RASALRVLSSIR--VPMIIPIV-----MLAIKDSSL-DMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQD 138 (645)
Q Consensus 72 ralALr~ls~I~--~~ei~~~l-----~~~I~~~l~-d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D 138 (645)
+.-|||++|||. +.+-.+.+ .+.+..++. ++...+||.|+-++..+-.-+++++ .++++.|..+|..
T Consensus 296 ~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 296 VTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred ccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence 999999999973 44433333 456677777 6778899999999999998888765 3688899999999
Q ss_pred CChhHHHHHHHHHHHHChh----hhhhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 139 KTTLVVGSAVMAFEEVCPE----RIDMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 139 ~~~~V~~sav~~l~ei~~~----~~~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
.+....--|+-|+..++.. ...++ .+++..+|+.|.-.|.=....+|+.|....+
T Consensus 376 ~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 376 AEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred cchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 8888888888888877743 22222 2356779999976676666677777766543
No 55
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.26 E-value=0.02 Score=62.89 Aligned_cols=116 Identities=18% Similarity=0.077 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKL 135 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~l 135 (645)
++..+.+-|.|+++-+|.-|.++|+.|+.+...+.+ .+.+.|.+|.||..++-++.. ...+| .+.+..+
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L----~~~L~~~~p~vR~aal~al~~-r~~~~------~~~L~~~ 155 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL----EPLLAASEPPGRAIGLAALGA-HRHDP------GPALEAA 155 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH----HHHhcCCChHHHHHHHHHHHh-hccCh------HHHHHHH
Confidence 477888999999999999999999999998866554 667789999999988754443 33332 3456788
Q ss_pred hcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy8267 136 LQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188 (645)
Q Consensus 136 L~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL 188 (645)
|+|.++.|..+|+.++..+..... ...|...+.+.+|=...-.+.-+
T Consensus 156 L~d~d~~Vra~A~raLG~l~~~~a------~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 156 LTHEDALVRAAALRALGELPRRLS------ESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred hcCCCHHHHHHHHHHHHhhccccc------hHHHHHHHcCCCHHHHHHHHHHH
Confidence 899999999999999988864322 11234445565554444444333
No 56
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.24 E-value=0.0021 Score=56.93 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=73.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh---hhh
Q psy8267 91 VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI---DMI 162 (645)
Q Consensus 91 l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~---~li 162 (645)
+++.+.+.+.|.++.+|+.|+.++..+...+|+.. .+.++.+.++|+|+++.|..+|+.++..++.... ..+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 45566777788888999999999988887766543 2567788888888889999899999888874332 222
Q ss_pred HH--HHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy8267 163 HK--SYRKLCNLLVDVDEWGQVFILNMLTRY 191 (645)
Q Consensus 163 ~~--~~~kL~~~L~~~~~W~Qv~iL~lL~~y 191 (645)
.. ....+.+.+.+.+...+-..+.+|...
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 22 356677777777777777777766654
No 57
>KOG0414|consensus
Probab=97.16 E-value=0.0019 Score=76.27 Aligned_cols=139 Identities=21% Similarity=0.231 Sum_probs=111.1
Q ss_pred cccchHHHHHHh----ccCCchhHHHHHHHHHHhcccCchH----HHHHHHHHHHHcCCCCHHHHHHHHHHHhCC--Ccc
Q psy8267 16 ASDLFPAVVKNV----VSKNIEVKKLVYVYLARYAEEQQDL----ALLSISTFQRALKDPNQLIRASALRVLSSI--RVP 85 (645)
Q Consensus 16 vs~lf~~vvkli----~s~~~~~KkL~Yl~l~~~~~~~~dl----~lL~iNsl~kDL~~~N~~iralALr~ls~I--~~~ 85 (645)
.+.+-|-|++.+ ..+|.++..-+++++..+.--..+. +-+.++.+- ++|+|.|||.+.-++|.+ +-|
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftime---ksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIME---KSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---cCCCceeeecchheccchhhhcc
Confidence 456777788887 4667999999999998886544332 223333322 599999999999999985 779
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 86 MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
.+++.-.+.+.+-+.|.++-|||+|.+.+..+.-.+-=.+.+.+..+..+|.|++..+..-|=.-|.|+...
T Consensus 994 nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 994 NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999998655444567778888999999999887777778888753
No 58
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.15 E-value=0.0012 Score=58.43 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCCcc------ccHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH---
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSSIRVP------MIIP-IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK--- 125 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~I~~~------ei~~-~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~--- 125 (645)
.++.+.+=+.++|+.+|..|+.+++++... .+.+ .+++.+.+++.|+++.||+.|+.++..+....|+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 345566667788889999999998888653 2222 445667788899999999999999999988765532
Q ss_pred --HHHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 126 --EELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 126 --~~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
.+.++.+.++|++.+..+...|+.++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 246888999999999999998888887765
No 59
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.13 E-value=0.057 Score=57.62 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=86.9
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhh
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDS 98 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~ 98 (645)
....+++++.+++..+|.-+..++..+. ..-++..+.+-+.|.++.+|..|..++|.++.++-++.+...+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG------SEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 4566778888888888888877755443 224667788999999999999999999999999988888666544
Q ss_pred cCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhH
Q psy8267 99 SLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLV 143 (645)
Q Consensus 99 l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V 143 (645)
|++.+||.+|+.++.++.... . +..+...++|.+..+
T Consensus 117 --d~~~~vR~~aa~aL~~~~~~~--a----~~~l~~~l~~~~~~~ 153 (335)
T COG1413 117 --DENEGVRAAAARALGKLGDER--A----LDPLLEALQDEDSGS 153 (335)
T ss_pred --CCcHhHHHHHHHHHHhcCchh--h----hHHHHHHhccchhhh
Confidence 899999999999999986432 2 445567788888776
No 60
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.12 E-value=0.15 Score=56.22 Aligned_cols=277 Identities=17% Similarity=0.152 Sum_probs=155.7
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhH
Q psy8267 166 YRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDH 245 (645)
Q Consensus 166 ~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~ 245 (645)
|..+++.|...|.+.+.+...+|+.+... .|...+ +.++
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~---~~~~~~--------------------------------------~~~l 141 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACF---GLAKME--------------------------------------GSDL 141 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhc---Cccccc--------------------------------------hhHH
Confidence 55566677777888899999999988632 121000 0122
Q ss_pred HHHHHhhhhhhcCC-ChHHHHHHHHHHHhc---CCh-HHH--HHHHHHHHHHhCC---ChhHHHHHHHHHHHHHhhcccc
Q psy8267 246 RLLLKNAKPLLQSR-NAAVVMAVAQLFHHL---APR-REV--AIIAKALVRLLRS---SREVQTVVLTTIASLAVKRRAL 315 (645)
Q Consensus 246 ~~ll~~~~~ll~s~-n~aVv~ea~~~i~~l---~~~-~~~--~~~~~~L~~lL~s---~~niryv~L~~l~~l~~~~p~~ 315 (645)
..+.+.+...+++. +...+.-|++++..+ ..- ..+ ...++.|..+|++ ...++|-++-++=.++-..+ .
T Consensus 142 ~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~ 220 (429)
T cd00256 142 DYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-A 220 (429)
T ss_pred HHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-H
Confidence 23444444445432 233333344444332 221 111 1245778888864 34788999998877764222 1
Q ss_pred hh--hhhceE---E-E-cCCCChHHHHHHHHHHHHccCcC--------CHHHHHH-HHHHhhc------cccHHHHHHHH
Q psy8267 316 FV--PYLKSF---Y-V-RSSDPTHVKTLKLELLTTLASET--------SIASILR-EFQTYIS------SVDKAFVAATV 373 (645)
Q Consensus 316 ~~--~~~~~f---~-~-l~~d~~~Ir~~kLdlL~~L~~~~--------Nv~~Il~-EL~~yl~------~~d~~~~~~~i 373 (645)
.+ .+...+ . + +...-.-|=|..+-+|.++.+.. ....++. .+...+. -.|+++..++-
T Consensus 221 ~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~ 300 (429)
T cd00256 221 AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLK 300 (429)
T ss_pred HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHH
Confidence 11 111111 1 1 22223457778888999999854 1222333 3333322 26888887765
Q ss_pred HHHHHHHhhcc--ccHHHHHH-HHHHhhccCChhhHHHHHH-HHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHH
Q psy8267 374 QAIGKCAANIA--QVTDTCLT-GLVSLLSYSDEAVVAESVV-VIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILW 449 (645)
Q Consensus 374 ~~I~~la~k~~--~~~~~~v~-~ll~LL~~~~~~v~~e~v~-~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iw 449 (645)
.--..+.+++. +..+.|.. .....|+-+.-|-++.-|. -..++-.+ .-++++.|.++++..++|.+.+.++.
T Consensus 301 ~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~----~~~llk~L~~iL~~s~d~~~laVAc~ 376 (429)
T cd00256 301 FLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEK----NYELLKILIHLLETSVDPIILAVACH 376 (429)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhc----chHHHHHHHHHHhcCCCcceeehhhh
Confidence 54445554433 22334433 2233344334455555662 33444322 24678999999987788888888899
Q ss_pred HHhcccccCCCchHHHHHH------HHHhhcCCchHHHHHHHHhhh
Q psy8267 450 LLGEYSHLVPALGPDVLRK------AAITFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 450 ilGEy~~~i~~~~~diLr~------l~~~f~~e~~~vk~~iL~~~~ 489 (645)
=+|||+...|. .-.++.. ..+-...++++||.+.|.+..
T Consensus 377 Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 377 DIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred hHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999887 4454443 223344689999999988764
No 61
>KOG0414|consensus
Probab=97.07 E-value=0.35 Score=58.02 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=115.0
Q ss_pred HHHHhCCCCcccchHHHHHHhccCCc-----hhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267 7 CYMMAKGRDASDLFPAVVKNVVSKNI-----EVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS 81 (645)
Q Consensus 7 i~l~~~G~dvs~lf~~vvkli~s~~~-----~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~ 81 (645)
+.++.--+....++-.+++.+.+..+ ...|.+-.+|..+++.-|.+++--.+.|..-|.+.+..+|+.-+..+++
T Consensus 259 v~l~~sky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n 338 (1251)
T KOG0414|consen 259 VTLVRSKYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICAN 338 (1251)
T ss_pred HHHHHHhcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 44555556678888999998876654 4578888899999988898888788888887888999999999999998
Q ss_pred CCc-----cc-------cHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCch---hHHHHHHHHHHhhcCCChhHHHH
Q psy8267 82 IRV-----PM-------IIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE---QKEELVLVIEKLLQDKTTLVVGS 146 (645)
Q Consensus 82 I~~-----~e-------i~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~---~~~~~~~~l~~lL~D~~~~V~~s 146 (645)
+.. ++ +-..++..+...+.|-+||||-++.....|+++.... ...+.......-|.|++..|.-+
T Consensus 339 ~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~ 418 (1251)
T KOG0414|consen 339 LVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKN 418 (1251)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHH
Confidence 632 22 2223566777788999999999999999999875533 23445555556788999999999
Q ss_pred HHHHHHHHC
Q psy8267 147 AVMAFEEVC 155 (645)
Q Consensus 147 av~~l~ei~ 155 (645)
|+.++..+.
T Consensus 419 Ai~Ll~~~L 427 (1251)
T KOG0414|consen 419 AIQLLSSLL 427 (1251)
T ss_pred HHHHHHHHH
Confidence 999887665
No 62
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.05 E-value=0.0035 Score=52.80 Aligned_cols=85 Identities=26% Similarity=0.331 Sum_probs=65.1
Q ss_pred HHHHHHh-ccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhc
Q psy8267 21 PAVVKNV-VSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSS 99 (645)
Q Consensus 21 ~~vvkli-~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l 99 (645)
+..++.+ .+++..+|.-+.-++..+.+ + -+++.+.+-++|+|+.+|..|+++|+.++.++.++.+ .+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L----~~~l 71 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD--P----EAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPAL----IKLL 71 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH--H----HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHH----HHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC--H----hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHH----HHHH
Confidence 3467777 68888999888777775532 2 3467777788999999999999999999987765555 5555
Q ss_pred CC-CChHHHHHHHHHHH
Q psy8267 100 LD-MSPYVRKTAAHAIP 115 (645)
Q Consensus 100 ~d-~~pyVRK~Aalal~ 115 (645)
.| ++..||..|+.++.
T Consensus 72 ~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 72 QDDDDEVVREAAAEALG 88 (88)
T ss_dssp TC-SSHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHhhcC
Confidence 55 57888999988863
No 63
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.98 E-value=0.0089 Score=60.12 Aligned_cols=153 Identities=19% Similarity=0.181 Sum_probs=90.4
Q ss_pred hHHHHHHHHhCC--CCcccchHHHH--------HHhccCCchhHHHHHHHHHHhccc----CchHHHHHHHHHHHHcCCC
Q psy8267 2 AKGTCCYMMAKG--RDASDLFPAVV--------KNVVSKNIEVKKLVYVYLARYAEE----QQDLALLSISTFQRALKDP 67 (645)
Q Consensus 2 alkkli~l~~~G--~dvs~lf~~vv--------kli~s~~~~~KkL~Yl~l~~~~~~----~~dl~lL~iNsl~kDL~~~ 67 (645)
|++++-.+...| .+-..-|.+.+ +.+.+.+-.+=+-+-..+..++.. -...+-..++.+.+=+.++
T Consensus 27 al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~ 106 (228)
T PF12348_consen 27 ALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDS 106 (228)
T ss_dssp HHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccc
Confidence 667777777766 22222333333 344444444445444444444332 1123556778888999999
Q ss_pred CHHHHHHHHHHHhCCCcccc-HHHH-HHHHHhhcCCCChHHHHHHHHHHHHHhhcCc---hh------HHHHHHHHHHhh
Q psy8267 68 NQLIRASALRVLSSIRVPMI-IPIV-MLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP---EQ------KEELVLVIEKLL 136 (645)
Q Consensus 68 N~~iralALr~ls~I~~~ei-~~~l-~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p---~~------~~~~~~~l~~lL 136 (645)
+..+|..|-.+|..|...-- .+.+ ...+..+..|++|-||..++.++..+....| +. .+.+.+.+.+++
T Consensus 107 ~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l 186 (228)
T PF12348_consen 107 KKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL 186 (228)
T ss_dssp -HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC
Confidence 99999888887776533222 2333 6777888999999999999999999888776 21 256888888999
Q ss_pred cCCChhHHHHHHHHHHHH
Q psy8267 137 QDKTTLVVGSAVMAFEEV 154 (645)
Q Consensus 137 ~D~~~~V~~sav~~l~ei 154 (645)
.|.++.|..+|-.+|..+
T Consensus 187 ~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 187 SDADPEVREAARECLWAL 204 (228)
T ss_dssp TSS-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999998887766654
No 64
>KOG4224|consensus
Probab=96.95 E-value=0.042 Score=57.86 Aligned_cols=322 Identities=16% Similarity=0.129 Sum_probs=174.1
Q ss_pred HHhccCCchhHHHHHHHHHHhcccCchH----HHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHH------HHHH
Q psy8267 25 KNVVSKNIEVKKLVYVYLARYAEEQQDL----ALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPI------VMLA 94 (645)
Q Consensus 25 kli~s~~~~~KkL~Yl~l~~~~~~~~dl----~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~------l~~~ 94 (645)
-+.+|.+..+..-+-.++..++-....- .++-..-+...+..++-.+||.|..++.++.+.+=... -..+
T Consensus 92 ~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p 171 (550)
T KOG4224|consen 92 ALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEP 171 (550)
T ss_pred HHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhh
Confidence 3455666666666666666555322210 01111113344556666778888888877644321111 1234
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhcCch---hH-HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh--hhh----HH
Q psy8267 95 IKDSSLDMSPYVRKTAAHAIPKLYSLDPE---QK-EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI--DMI----HK 164 (645)
Q Consensus 95 I~~~l~d~~pyVRK~Aalal~kl~~~~p~---~~-~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~--~li----~~ 164 (645)
+.++...++--||+.|.-++..+-..... ++ ..-++.+.+++...|+.|..-+..++..|.-++. ..+ ++
T Consensus 172 ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~ 251 (550)
T KOG4224|consen 172 LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPK 251 (550)
T ss_pred hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccc
Confidence 55677778888999888888776544332 22 2456788889999999888888888877765432 111 23
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChh
Q psy8267 165 SYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPD 244 (645)
Q Consensus 165 ~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d 244 (645)
.+++|++.+.+.++-.|+..=-.|..... ++.++. +. .. .
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-------------dt~Yq~--ei-----v~------------a-------- 291 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLAS-------------DTEYQR--EI-----VE------------A-------- 291 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcc-------------cchhhh--HH-----Hh------------c--------
Confidence 45667777777777655543333332220 000000 00 00 0
Q ss_pred HHHHHHhhhhhhcCCChHHHHHHHHHHHhc--CChHH--H--HHHHHHHHHHhC-CCh-hHHHHHHHHHHHHHhhcccch
Q psy8267 245 HRLLLKNAKPLLQSRNAAVVMAVAQLFHHL--APRRE--V--AIIAKALVRLLR-SSR-EVQTVVLTTIASLAVKRRALF 316 (645)
Q Consensus 245 ~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l--~~~~~--~--~~~~~~L~~lL~-s~~-niryv~L~~l~~l~~~~p~~~ 316 (645)
--+.....++|+..--.+++.+-|+-++ .|-.+ + ...-++|+++|+ .++ ++|.-+...+-.++..+..-
T Consensus 292 --g~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n- 368 (550)
T KOG4224|consen 292 --GSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN- 368 (550)
T ss_pred --CCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh-
Confidence 0011223556766656666767777433 33222 1 124578999996 665 49988888887777633211
Q ss_pred hhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccH----HHHHH
Q psy8267 317 VPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVT----DTCLT 392 (645)
Q Consensus 317 ~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~----~~~v~ 392 (645)
.+.| -++++ +..|.+.+.+...+|+.++--+|+.+|..-.... .-.++
T Consensus 369 ---~~~i----------------------~esgA---i~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~ 420 (550)
T KOG4224|consen 369 ---VSVI----------------------RESGA---IPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIP 420 (550)
T ss_pred ---hHHH----------------------hhcCc---hHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcc
Confidence 0000 12222 2334445567778888888888888875422111 12334
Q ss_pred HHHHhhccCChhhHHHHHHHHHHHh
Q psy8267 393 GLVSLLSYSDEAVVAESVVVIKNLL 417 (645)
Q Consensus 393 ~ll~LL~~~~~~v~~e~v~~i~~il 417 (645)
+|+.+.....+.+...+...+.++-
T Consensus 421 iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 421 ILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred eeecccCccchhhcccHHHHHHhhh
Confidence 4555554444445444444444443
No 65
>KOG1077|consensus
Probab=96.87 E-value=1 Score=51.39 Aligned_cols=336 Identities=19% Similarity=0.223 Sum_probs=183.7
Q ss_pred HHHHHHHHHHhcccCchHH-HHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy8267 35 KKLVYVYLARYAEEQQDLA-LLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHA 113 (645)
Q Consensus 35 KkL~Yl~l~~~~~~~~dl~-lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aala 113 (645)
=||.|+|+.-|- =|.- +-++|-+ +.-+=+.-.|--+++..|-+ ...++...+...|++-+.+.+|-----|..|
T Consensus 60 ~KLlyI~llg~d---IdFGhmEaV~LL-ss~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL~~ 134 (938)
T KOG1077|consen 60 CKLLYIYLLGYD---IDFGHMEAVNLL-SSNKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLALHC 134 (938)
T ss_pred HHHHHHHHhcCc---cccchHHHHHHh-hcCCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHHHH
Confidence 356777775431 2221 2233322 11122234555577776665 3477888899999999999999888889999
Q ss_pred HHHHhhcCchhHHHHHHHHHHhhcCCC--hhHHHHHHHHHHHHChhhhhhhHH--HHHHHHHHhcCCCchh----HHHHH
Q psy8267 114 IPKLYSLDPEQKEELVLVIEKLLQDKT--TLVVGSAVMAFEEVCPERIDMIHK--SYRKLCNLLVDVDEWG----QVFIL 185 (645)
Q Consensus 114 l~kl~~~~p~~~~~~~~~l~~lL~D~~--~~V~~sav~~l~ei~~~~~~li~~--~~~kL~~~L~~~~~W~----Qv~iL 185 (645)
+..+.. -|..+.+.+.|-++|-..+ +.|--.|.-+|..+....++++.+ -+.+++.+|.|-+ .+ -+.++
T Consensus 135 I~niG~--re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~-~gv~ta~~sLi 211 (938)
T KOG1077|consen 135 IANIGS--REMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQH-MGVVTAATSLI 211 (938)
T ss_pred HHhhcc--HhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccc-cceeeehHHHH
Confidence 888763 3455777778888886543 455555555555665444444332 2556777776643 32 23455
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhh----hh---hc-
Q psy8267 186 NMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAK----PL---LQ- 257 (645)
Q Consensus 186 ~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~----~l---l~- 257 (645)
..|..+. |..... -+.+....+.+.+. ++ ..
T Consensus 212 ~~lvk~~------p~~yk~-----------------------------------~~~~avs~L~riv~~~~t~~qdYTyy 250 (938)
T KOG1077|consen 212 EALVKKN------PESYKT-----------------------------------CLPLAVSRLSRIVVVVGTSLQDYTYY 250 (938)
T ss_pred HHHHHcC------CHHHhh-----------------------------------hHHHHHHHHHHHHhhcccchhhceee
Confidence 5554443 211000 00000011111000 00 00
Q ss_pred -CCChHHHHHHHHHHHhcCChH---HHHHHHHHHHHHhCC-----------ChhHHHHHHHHHHHHHhh---cccchhhh
Q psy8267 258 -SRNAAVVMAVAQLFHHLAPRR---EVAIIAKALVRLLRS-----------SREVQTVVLTTIASLAVK---RRALFVPY 319 (645)
Q Consensus 258 -s~n~aVv~ea~~~i~~l~~~~---~~~~~~~~L~~lL~s-----------~~niryv~L~~l~~l~~~---~p~~~~~~ 319 (645)
-.++=......+++-.+.+++ ...++.+.|-++|+. +.|.+-.+|--...++.+ .|+++.+.
T Consensus 251 ~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~ 330 (938)
T KOG1077|consen 251 FVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRA 330 (938)
T ss_pred cCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 011111122233333332221 123344455555431 124444444333333322 23455443
Q ss_pred hceEE-EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHH----hhc-cccHHHHHHHHHHHHHHHhhccccHHHHHHH
Q psy8267 320 LKSFY-VRSSDPTHVKTLKLELLTTLASETSIASILREFQT----YIS-SVDKAFVAATVQAIGKCAANIAQVTDTCLTG 393 (645)
Q Consensus 320 ~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~----yl~-~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ 393 (645)
....- .+.+..+.||-++||-++.||+.+-....|+.=++ -++ +.|..+|+.++.-+--++. -+.+...|+-
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~IV~e 408 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQIVAE 408 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHHHHHHH
Confidence 33221 23445578999999999999998877777764443 334 5788999999887755553 3577889999
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhhcCC
Q psy8267 394 LVSLLSYSDEAVVAESVVVIKNLLQTQP 421 (645)
Q Consensus 394 ll~LL~~~~~~v~~e~v~~i~~il~~~p 421 (645)
+++.|.+++..+.+|.+.-+--+-.++.
T Consensus 409 lLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 409 LLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 9999999887777777665554555543
No 66
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.86 E-value=0.078 Score=54.53 Aligned_cols=219 Identities=17% Similarity=0.201 Sum_probs=134.4
Q ss_pred HHhhcC-CCChHHHHHHHHHHHHHhhc--CchhHH--HHHHHHHHhhcCCChhHHHHHHHHHHHHChh--hhhhhHHHHH
Q psy8267 95 IKDSSL-DMSPYVRKTAAHAIPKLYSL--DPEQKE--ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE--RIDMIHKSYR 167 (645)
Q Consensus 95 I~~~l~-d~~pyVRK~Aalal~kl~~~--~p~~~~--~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~--~~~li~~~~~ 167 (645)
+..++. ..+|+++.+|..++...-.. +.+.+. +.++.+.++|+++++.|.-.|+.++..+... +...+..++.
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~ 96 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP 96 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 344455 45899999999998886322 223332 4578899999999999999999999877643 3345555677
Q ss_pred HHHHHhcC--CCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhH
Q psy8267 168 KLCNLLVD--VDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDH 245 (645)
Q Consensus 168 kL~~~L~~--~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~ 245 (645)
++|+.+.. .+.-.|..-|++|...... +.. +.+ +
T Consensus 97 ~Vc~~~~s~~lns~~Q~agLrlL~nLtv~----~~~------------------------------------~~~----l 132 (254)
T PF04826_consen 97 QVCEETVSSPLNSEVQLAGLRLLTNLTVT----NDY------------------------------------HHM----L 132 (254)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHccCCC----cch------------------------------------hhh----H
Confidence 78876544 3666899999999877531 100 011 1
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHH-H-----HHHHHHHHHhCC--ChhHHHHHHHHHHHHHhhcccchh
Q psy8267 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREV-A-----IIAKALVRLLRS--SREVQTVVLTTIASLAVKRRALFV 317 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~-~-----~~~~~L~~lL~s--~~niryv~L~~l~~l~~~~p~~~~ 317 (645)
...+....+++.+.|..+...+.+++.+++..... + ++...++.|+.+ +.++-.-+|..+..|......
T Consensus 133 ~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~--- 209 (254)
T PF04826_consen 133 ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK--- 209 (254)
T ss_pred HhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc---
Confidence 12233345678888888999999999999865432 2 234566677753 345555566655555432211
Q ss_pred hhhceEEE--cCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHH
Q psy8267 318 PYLKSFYV--RSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATV 373 (645)
Q Consensus 318 ~~~~~f~~--l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i 373 (645)
++ ..+. .++.+ -|+.+..+. +...++|+.-+.+.|++++.++|
T Consensus 210 ~~--~~~~~~~~~~~---------~L~~~~~e~--~~~~~~l~~l~~h~d~ev~~~v~ 254 (254)
T PF04826_consen 210 EA--YVFVQDDFSED---------SLFSLFGES--SQLAKKLQALANHPDPEVKEQVI 254 (254)
T ss_pred cc--ceeccccCCch---------hHHHHHccH--HHHHHHHHHHHcCCCHHHhhhcC
Confidence 00 0111 11111 133333333 46777777777778888887653
No 67
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.79 E-value=0.0071 Score=67.87 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=120.6
Q ss_pred ccchHHHHHHhcc----CCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCC--CccccHH
Q psy8267 17 SDLFPAVVKNVVS----KNIEVKKLVYVYLARYAEEQQDLALLSISTFQRAL-KDPNQLIRASALRVLSSI--RVPMIIP 89 (645)
Q Consensus 17 s~lf~~vvkli~s----~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL-~~~N~~iralALr~ls~I--~~~ei~~ 89 (645)
|.+-|-|.+..++ +|.++.+-+|+.+..+.--..+...-.-..+..-+ ++|+|.||+.|.-.||.+ +-...++
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d 970 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD 970 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH
Confidence 5556667777776 78889999999887664322221111111122223 599999999999999986 4456677
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHH
Q psy8267 90 IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKL 169 (645)
Q Consensus 90 ~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL 169 (645)
.....+.+.+.|.+..|||++.+++.-+.-...=-+.+-.+.+..+|.|+|.++---|-+.|.++..+.-... ..|--+
T Consensus 971 e~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~y-n~fidi 1049 (1128)
T COG5098 971 EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMY-NGFIDI 1049 (1128)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchh-hhhHHH
Confidence 7777788999999999999999999888744433345667788899999999988788888888875432221 112234
Q ss_pred HHHhcCCCchhHH---HHHHHHHHHH
Q psy8267 170 CNLLVDVDEWGQV---FILNMLTRYA 192 (645)
Q Consensus 170 ~~~L~~~~~W~Qv---~iL~lL~~y~ 192 (645)
...|..-++-+|- +|+++|+.+.
T Consensus 1050 fs~ls~~ae~g~e~fk~II~FLt~fI 1075 (1128)
T COG5098 1050 FSTLSSDAENGQEPFKLIIGFLTDFI 1075 (1128)
T ss_pred HHHcCchhhcCCCcHHHHHHHHHHHH
Confidence 4555554555553 6888888886
No 68
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.73 E-value=0.051 Score=55.83 Aligned_cols=128 Identities=18% Similarity=0.147 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHhCCCccccHHHHH------HHHHhhcCCCChHHHHHHHHHHHHHhhcCch--hHHHHHHHHHH-hh
Q psy8267 66 DPNQLIRASALRVLSSIRVPMIIPIVM------LAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE--QKEELVLVIEK-LL 136 (645)
Q Consensus 66 ~~N~~iralALr~ls~I~~~ei~~~l~------~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~--~~~~~~~~l~~-lL 136 (645)
+.+|.++.-|+-+|++...-...+.++ +.|.+.+.+++|-||.+|..|+..+-.-.+. .++..++.+.+ .+
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 568999999999999987655555543 4578889999999999999998876543333 34555555444 34
Q ss_pred cC-CChhHHHHHHHHHHHHChh--hhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 137 QD-KTTLVVGSAVMAFEEVCPE--RIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 137 ~D-~~~~V~~sav~~l~ei~~~--~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
.+ -|..|..+++.++..+.-. .-..+.+.+..++..|..-++-.|+..|++|..+..
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 43 4678888999999888632 224455667778888888888899999999988763
No 69
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.69 E-value=0.0061 Score=53.10 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=56.2
Q ss_pred ccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH----HHHHHHHHHhhcCCChhHHHHHH
Q psy8267 84 VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK----EELVLVIEKLLQDKTTLVVGSAV 148 (645)
Q Consensus 84 ~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~----~~~~~~l~~lL~D~~~~V~~sav 148 (645)
..+..+.++++|.+++.|+++-||-.|+.|++.+.+...+.+ ++.++.+.+++.|.|+.|..+|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 566778889999999999999999999999999998766543 67788889999999999988763
No 70
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.48 E-value=0.99 Score=50.45 Aligned_cols=186 Identities=16% Similarity=0.220 Sum_probs=111.2
Q ss_pred HHHHHHHH---hCCChhHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHH-----ccCcCCHHHHH
Q psy8267 283 IAKALVRL---LRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTT-----LASETSIASIL 354 (645)
Q Consensus 283 ~~~~L~~l---L~s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~-----L~~~~Nv~~Il 354 (645)
+.+.|++- ..++.|.|-.+..++.+|....|+.+.+-.-.|+ ++-.+|||--.+ ++.++ ...+
T Consensus 499 i~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~-------~~~~~kl~~~isv~~q~l~~eD--~~~~ 569 (858)
T COG5215 499 ILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY-------DYTSKKLDECISVLGQILATED--QLLV 569 (858)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhhHH--HHHH
Confidence 44555442 2367899999999999998888876665444442 222333332221 11222 1124
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhccCCh-hhHHHHHHHHHHHhhcCCcch----H
Q psy8267 355 REFQTYISSVDKAFVAATVQAIGKCAANI----AQVTDTCLTGLVSLLSYSDE-AVVAESVVVIKNLLQTQPEAY----T 425 (645)
Q Consensus 355 ~EL~~yl~~~d~~~~~~~i~~I~~la~k~----~~~~~~~v~~ll~LL~~~~~-~v~~e~v~~i~~il~~~p~~~----~ 425 (645)
+||+. ..+.-+..+..++ .++.+..++.++++|+...+ .+-.|+...|..+...-.+.+ +
T Consensus 570 ~elqS-----------N~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~ 638 (858)
T COG5215 570 EELQS-----------NYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYAS 638 (858)
T ss_pred HHHHH-----------HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 55543 1222222233344 34567788888888988744 456677777777765333333 3
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhcccccCCC----chHHHHHHHHHhhcCC--chHHHHHHHHhhh
Q psy8267 426 DIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPA----LGPDVLRKAAITFVNE--EDIVKLQVLNLAP 489 (645)
Q Consensus 426 ~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~----~~~diLr~l~~~f~~e--~~~vk~~iL~~~~ 489 (645)
+.+..|.+.+ ++++..+..+++-++|.-+..... ++.++...++....++ +.++|..||..|.
T Consensus 639 ~fiPyl~~al-n~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFg 707 (858)
T COG5215 639 KFIPYLTRAL-NCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFG 707 (858)
T ss_pred hhhHHHHHHh-cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHH
Confidence 4555666666 456666777778888887754432 3556677777777665 4579999998887
No 71
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.38 E-value=0.53 Score=53.36 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhCC--CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHH
Q psy8267 69 QLIRASALRVLSSI--RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGS 146 (645)
Q Consensus 69 ~~iralALr~ls~I--~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~s 146 (645)
+-..-||-.++.+. .-|++.+.-+.++..+..|.+.-||+.|+-++..+++-+|+.+....++|..||...++..+..
T Consensus 36 ~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~ 115 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDA 115 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHH
Confidence 44444444444443 3455555566666677777788889999989998888889988888999999998777665555
Q ss_pred HHHHHHHHChhhh-hhhHHHHHHHHHHhc---CCCchhHHHHHHHHHHHH
Q psy8267 147 AVMAFEEVCPERI-DMIHKSYRKLCNLLV---DVDEWGQVFILNMLTRYA 192 (645)
Q Consensus 147 av~~l~ei~~~~~-~li~~~~~kL~~~L~---~~~~W~Qv~iL~lL~~y~ 192 (645)
+-.+|.++....+ .-+ .-+++.+. .-++-..-++|++|....
T Consensus 116 v~~sL~~ll~~d~k~tL----~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 116 VKNSLMSLLKQDPKGTL----TGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HHHHHHHHHHH-HHHHH----HHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCcHHHH----HHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 4445544442222 112 22333333 345656667888776554
No 72
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.24 E-value=0.01 Score=45.63 Aligned_cols=50 Identities=36% Similarity=0.391 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHhhcCchhH----HHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy8267 104 PYVRKTAAHAIPKLYSLDPEQK----EELVLVIEKLLQDKTTLVVGSAVMAFEE 153 (645)
Q Consensus 104 pyVRK~Aalal~kl~~~~p~~~----~~~~~~l~~lL~D~~~~V~~sav~~l~e 153 (645)
|.||..|+.++..+-...|+.. ++.++.+..+|+|+++.|..+|+.++..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5677777777776655555543 4566666677777777777777666653
No 73
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.18 E-value=3.9 Score=48.10 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=85.3
Q ss_pred HHHHH-cCCCCHHHHHHHHHHH-hCC-CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q psy8267 59 TFQRA-LKDPNQLIRASALRVL-SSI-RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKL 135 (645)
Q Consensus 59 sl~kD-L~~~N~~iralALr~l-s~I-~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~l 135 (645)
+++.. +.+.|..-|--|++.+ +.+ .+.+ .+.+.++|.|.....+.-+||=--+=+.+.-+.+|+..--.++.+.+=
T Consensus 22 ~~~sg~l~s~n~~~kidAmK~iIa~M~~G~d-mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kD 100 (757)
T COG5096 22 ALSSGRLESSNDYKKIDAMKKIIAQMSLGED-MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKD 100 (757)
T ss_pred hhccccccccChHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Confidence 44555 8888888888888765 333 2334 567777787777778888888777766666677787655556666777
Q ss_pred hcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHH-HHHHHHHHH
Q psy8267 136 LQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQV-FILNMLTRY 191 (645)
Q Consensus 136 L~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv-~iL~lL~~y 191 (645)
+.|+|+.+.+.|+..+..+--.. ++...+.-+.+.+.+.++...- .++-+...|
T Consensus 101 l~d~N~~iR~~AlR~ls~l~~~e--l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLRVKE--LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 78889998888888877664222 2222233455566777775533 344444444
No 74
>KOG2259|consensus
Probab=96.17 E-value=2.9 Score=47.67 Aligned_cols=314 Identities=16% Similarity=0.132 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCc-----cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHH
Q psy8267 53 ALLSISTFQRALKDPNQLIRASALRVLSSIRV-----PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE 127 (645)
Q Consensus 53 ~lL~iNsl~kDL~~~N~~iralALr~ls~I~~-----~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~ 127 (645)
..+..+.=.+-......-+|-.++.++..++. +..-+.+...+.....|.++-||+.|+.+++.+.. .-.+-..
T Consensus 156 i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~ 234 (823)
T KOG2259|consen 156 ILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKA 234 (823)
T ss_pred HHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHH
Confidence 34444444444455555667777777776653 23445566667788899999999999999988875 2222245
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHH---HHCh-------hhhhhhHHHHHHHHHHhcCC------------CchhHH---
Q psy8267 128 LVLVIEKLLQDKTTLVVGSAVMAFE---EVCP-------ERIDMIHKSYRKLCNLLVDV------------DEWGQV--- 182 (645)
Q Consensus 128 ~~~~l~~lL~D~~~~V~~sav~~l~---ei~~-------~~~~li~~~~~kL~~~L~~~------------~~W~Qv--- 182 (645)
......++|.|.+..|..+|+.++. ..+| ++..+.-..|.++|+.+.|. -.+.|+
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 6777789999999999999987765 4453 12245556789999998773 333443
Q ss_pred HHHHHHHH-----HHhhhc--CCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhh--h
Q psy8267 183 FILNMLTR-----YARTQF--TDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNA--K 253 (645)
Q Consensus 183 ~iL~lL~~-----y~r~~~--~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~--~ 253 (645)
.|.+.|.+ .-|.-+ ..|..... +-+ . -..+.|-++-. .++ .|.....++..- -
T Consensus 315 ~i~QTLdKKlms~lRRkr~ahkrpk~l~s-~Ge-w-----SsGk~~~advp-see----------~d~~~~siI~sGACG 376 (823)
T KOG2259|consen 315 IIQQTLDKKLMSRLRRKRTAHKRPKALYS-SGE-W-----SSGKEWNADVP-SEE----------DDEEEESIIPSGACG 376 (823)
T ss_pred HHHHHHHHHHhhhhhhhhhcccchHHHHh-cCC-c-----ccCccccccCc-hhh----------ccccccccccccccc
Confidence 23333322 111100 01111000 000 0 00111101000 000 010011111100 0
Q ss_pred hh---hcCCChHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHhhcccchhhhhceEE-Ec
Q psy8267 254 PL---LQSRNAAVVMAVAQLFHHLAP--RREVAIIAKALVRLLRSS-REVQTVVLTTIASLAVKRRALFVPYLKSFY-VR 326 (645)
Q Consensus 254 ~l---l~s~n~aVv~ea~~~i~~l~~--~~~~~~~~~~L~~lL~s~-~niryv~L~~l~~l~~~~p~~~~~~~~~f~-~l 326 (645)
.+ +...-.-|.-+|+..++.++. +.-...+..-|+.+++.+ -.+|.-++.+|..|+.. -.+-+.++..|. ++
T Consensus 377 A~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~~il~~L 455 (823)
T KOG2259|consen 377 ALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLRQILESL 455 (823)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHHHHHHHH
Confidence 00 000111344455555555543 222345667777777755 47888888888777753 333345555555 67
Q ss_pred CCCChHHHHHHHHHHHH--ccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccH
Q psy8267 327 SSDPTHVKTLKLELLTT--LASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVT 387 (645)
Q Consensus 327 ~~d~~~Ir~~kLdlL~~--L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~ 387 (645)
.|....||.-..++|.. ..+.+-+...+.+|+..+..- ++=+.++..++++++.|.+.-.
T Consensus 456 ~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~lv 517 (823)
T KOG2259|consen 456 EDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRRLV 517 (823)
T ss_pred HhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChhhH
Confidence 67667777766666643 223333444555555544321 0113345556666676665443
No 75
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.14 E-value=0.059 Score=60.85 Aligned_cols=127 Identities=17% Similarity=0.317 Sum_probs=105.0
Q ss_pred CCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC-----CccccHH-------HHHHHHHh
Q psy8267 30 KNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI-----RVPMIIP-------IVMLAIKD 97 (645)
Q Consensus 30 ~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I-----~~~ei~~-------~l~~~I~~ 97 (645)
++.+--|=+-+++..+.+-.|.+++---+.+.+-|.+..-..||.-+...+++ ..++|.+ .++.-+..
T Consensus 274 ~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~E 353 (1128)
T COG5098 274 PDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVE 353 (1128)
T ss_pred ccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHH
Confidence 44444466678888888888998888899999999999999999999999997 3444554 56667777
Q ss_pred hcCCCChHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHCh
Q psy8267 98 SSLDMSPYVRKTAAHAIPKLYSLD---PEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 98 ~l~d~~pyVRK~Aalal~kl~~~~---p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~ 156 (645)
-+.|.+||+|-||...+-|++.+. |.-..+++......|.|++..|..+|+.++..+.-
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 889999999999999999999864 44456788888899999999999999998887763
No 76
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.13 E-value=0.014 Score=44.93 Aligned_cols=49 Identities=24% Similarity=0.256 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCC------ccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy8267 69 QLIRASALRVLSSIR------VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKL 117 (645)
Q Consensus 69 ~~iralALr~ls~I~------~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl 117 (645)
|.+|..|+.+||++. .....+.+++.+.+++.|+++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 568999999999874 2345667888889999999999999999998764
No 77
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.10 E-value=0.0087 Score=40.49 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhh
Q psy8267 91 VMLAIKDSSLDMSPYVRKTAAHAIPKLYS 119 (645)
Q Consensus 91 l~~~I~~~l~d~~pyVRK~Aalal~kl~~ 119 (645)
+++.+.+++.|++|.||..|+.|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999998875
No 78
>KOG1824|consensus
Probab=96.10 E-value=1.9 Score=50.88 Aligned_cols=202 Identities=14% Similarity=0.132 Sum_probs=107.3
Q ss_pred HHHHHHHHhC--CChhHHHHHHHHHHHHHhhcccchhhhhceEE--EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHH
Q psy8267 283 IAKALVRLLR--SSREVQTVVLTTIASLAVKRRALFVPYLKSFY--VRSSDPTHVKTLKLELLTTLASETSIASILREFQ 358 (645)
Q Consensus 283 ~~~~L~~lL~--s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~--~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~ 358 (645)
+.+....+.+ ++..+|..++-.+..+....+..-++.+.... +..+....||.-|---|-+++ ..|.+.-+.+++
T Consensus 819 a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~-vgnl~~yLpfil 897 (1233)
T KOG1824|consen 819 ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLA-VGNLPKYLPFIL 897 (1233)
T ss_pred HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhh-cCchHhHHHHHH
Confidence 3344445664 45678899999999988755533333333322 345556778888877776654 567777777777
Q ss_pred Hhhcccc--HHHHHHHH-HHHHHHHh-hccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHh
Q psy8267 359 TYISSVD--KAFVAATV-QAIGKCAA-NIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRL 434 (645)
Q Consensus 359 ~yl~~~d--~~~~~~~i-~~I~~la~-k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~ 434 (645)
+.+.+.. .++--.+. ..|..... -+-+..+...+.|.+=.+...+....-+.+.+-.++-.+|+. .+.+|-..
T Consensus 898 ~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes---LlpkL~~~ 974 (1233)
T KOG1824|consen 898 EQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES---LLPKLKLL 974 (1233)
T ss_pred HHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH---HHHHHHHH
Confidence 6554422 11111111 11111110 011222333333443333333332222233456677777854 34444444
Q ss_pred hccCChHHH----HHHHHHHHhcccccCCCchHHHHHHHHHhhcCCchHHHHHHHHhhh
Q psy8267 435 SDSITVPTA----RAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 435 l~~i~~~~a----k~~~iwilGEy~~~i~~~~~diLr~l~~~f~~e~~~vk~~iL~~~~ 489 (645)
+.+ ..+.. ..++=|.+.+-++.+..+-...+..+++.|.+++.+||...|.++-
T Consensus 975 ~~S-~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~n 1032 (1233)
T KOG1824|consen 975 LRS-EASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLN 1032 (1233)
T ss_pred hcC-CCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 433 22223 3334455555555555444456778888899999999986666554
No 79
>KOG1240|consensus
Probab=95.62 E-value=0.5 Score=56.83 Aligned_cols=131 Identities=21% Similarity=0.282 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCC----------CccccHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHhh----
Q psy8267 55 LSISTFQRALKDPNQLIRASALRVLSSI----------RVPMIIPIVMLAIKDSSLD-MSPYVRKTAAHAIPKLYS---- 119 (645)
Q Consensus 55 L~iNsl~kDL~~~N~~iralALr~ls~I----------~~~ei~~~l~~~I~~~l~d-~~pyVRK~Aalal~kl~~---- 119 (645)
-+.--+.--+.|+.+.+||.||.+++.+ ...-..+++.+.+..++.| ...+||=+=|-++..+-.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 5667777888999999999999999875 2234678899999999999 788899777766655431
Q ss_pred --------------cCchh---------------HHHHHHHHHHhhcCCChhHHHHHHHHHHHHCh----hhh-hhhHHH
Q psy8267 120 --------------LDPEQ---------------KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCP----ERI-DMIHKS 165 (645)
Q Consensus 120 --------------~~p~~---------------~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~----~~~-~li~~~ 165 (645)
-+|+- .....+....||.|+++.|-.+-+..+..+|- .+. ++|
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~i--- 618 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVI--- 618 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccch---
Confidence 11221 12334456678999999998888777777772 222 444
Q ss_pred HHHHHHHhcCCCchhHHHHHHHH
Q psy8267 166 YRKLCNLLVDVDEWGQVFILNML 188 (645)
Q Consensus 166 ~~kL~~~L~~~~~W~Qv~iL~lL 188 (645)
..+|+..|+|-|+-+.....+-+
T Consensus 619 LshLiTfLNDkDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 619 LSHLITFLNDKDWRLRGAFFDSI 641 (1431)
T ss_pred HHHHHHHhcCccHHHHHHHHhhc
Confidence 34477777776444444444443
No 80
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.47 E-value=0.26 Score=56.88 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKL 135 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~l 135 (645)
..+-+.++.+..++..+-++|++|||++.+..++.+.+.+. .-...++++|..|+.|+.++-..+|+.+. +.+.++
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~---~~l~~i 522 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQ---EVLLPI 522 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHH---HHHHHH
Confidence 34445555566778889999999999999999998887764 33445899999999999999888888653 334455
Q ss_pred hcC--CChhHHHHHHHHHHHHChhhh
Q psy8267 136 LQD--KTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 136 L~D--~~~~V~~sav~~l~ei~~~~~ 159 (645)
..| .++.|..+|+.++....|...
T Consensus 523 ~~n~~e~~EvRiaA~~~lm~t~P~~~ 548 (574)
T smart00638 523 YLNRAEPPEVRMAAVLVLMETKPSVA 548 (574)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCCHH
Confidence 444 678899999999998877654
No 81
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.21 E-value=0.52 Score=47.23 Aligned_cols=161 Identities=11% Similarity=0.093 Sum_probs=92.3
Q ss_pred CCCChHHHHHHHHHHHHccCcC----CHHHHHHHHH-------HhhccccHHHHHHHHHHHHHHHhhc----cccHHHHH
Q psy8267 327 SSDPTHVKTLKLELLTTLASET----SIASILREFQ-------TYISSVDKAFVAATVQAIGKCAANI----AQVTDTCL 391 (645)
Q Consensus 327 ~~d~~~Ir~~kLdlL~~L~~~~----Nv~~Il~EL~-------~yl~~~d~~~~~~~i~~I~~la~k~----~~~~~~~v 391 (645)
.+.+...|..+|+-|-.++... +.+.+++.|. ..+.+....+.+.++..++.++... .+..+.++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4566777788888777776544 4444444443 2333344557777888888877654 44556777
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHH-HHHHHHhhccCChHHHHHHHHHH----Hhccc---ccCCCc--
Q psy8267 392 TGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDI-IRHMVRLSDSITVPTARAAILWL----LGEYS---HLVPAL-- 461 (645)
Q Consensus 392 ~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~-i~~L~~~l~~i~~~~ak~~~iwi----lGEy~---~~i~~~-- 461 (645)
..|++.+..+...+.+.+...+..+++..+ ....+ ...+.... .-+.|.+|..++=. +..++ ..+...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 778888888877888888899999998766 22334 33333333 33567776543333 44444 122221
Q ss_pred hHHHHHHHHHhhcCCchHHHHHHHHhhh
Q psy8267 462 GPDVLRKAAITFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 462 ~~diLr~l~~~f~~e~~~vk~~iL~~~~ 489 (645)
-+.+...+.+...+.+++||.+.-.++.
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLW 202 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 2567888888888999999998777765
No 82
>KOG1240|consensus
Probab=94.60 E-value=7.3 Score=47.44 Aligned_cols=117 Identities=20% Similarity=0.266 Sum_probs=78.6
Q ss_pred HHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhhhceEEEc-CCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHh
Q psy8267 283 IAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPYLKSFYVR-SSDPTHVKTLKLELLTTLASETSIASILREFQTY 360 (645)
Q Consensus 283 ~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l-~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~y 360 (645)
+......||. ++|.||-.-|++|..|+. ||.+ .++| .|+..|.+|
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------------FFGk~ksND---------------------~iLshLiTf 625 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCV------------FFGKEKSND---------------------VILSHLITF 625 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHH------------Hhhhccccc---------------------chHHHHHHH
Confidence 3445566776 667999988888776653 4532 2333 378888999
Q ss_pred hccccHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHH
Q psy8267 361 ISSVDKAFVAATVQAIGKCAANIAQV--TDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVR 433 (645)
Q Consensus 361 l~~~d~~~~~~~i~~I~~la~k~~~~--~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~ 433 (645)
+.+.|..+|..-.++|.-++.-..+. .+..+..|.+=|+++.++|...++..+.-++.. .-+++.++..+.+
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~ 699 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQ 699 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHH
Confidence 99999999999999887665544443 344455555567888888888888777766643 3445555554443
No 83
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.58 E-value=4.6 Score=45.77 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhcCch----hHHHHHH
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDM-SPYVRKTAAHAIPKLYSLDPE----QKEELVL 130 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~-~pyVRK~Aalal~kl~~~~p~----~~~~~~~ 130 (645)
++.+++-|..+.+|++|--.-|+.|-+...-=++.+.+.+..+..+. |.--|.+.+-++.++..+-.- .+..+.+
T Consensus 282 ~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ 361 (975)
T COG5181 282 SVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLK 361 (975)
T ss_pred eeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHH
Confidence 34578889999999999777666665432222334555555556555 888899988888887764322 2356788
Q ss_pred HHHHhhcCCChhHH---HHHHHHHHHHC
Q psy8267 131 VIEKLLQDKTTLVV---GSAVMAFEEVC 155 (645)
Q Consensus 131 ~l~~lL~D~~~~V~---~sav~~l~ei~ 155 (645)
.|.++|.|.+..|. +++++.+.|..
T Consensus 362 ci~~~l~D~~~~vRi~tA~alS~lae~~ 389 (975)
T COG5181 362 CISKLLKDRSRFVRIDTANALSYLAELV 389 (975)
T ss_pred HHHHHhhccceeeeehhHhHHHHHHHhc
Confidence 89999999875444 45566655554
No 84
>KOG0567|consensus
Probab=94.55 E-value=0.18 Score=51.23 Aligned_cols=87 Identities=30% Similarity=0.452 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLD--MSPYVRKTAAHAIPKLYSLDPEQKEELVLVIE 133 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d--~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~ 133 (645)
+||+|-.-+.+...++|--+--++|.+..+.-++.+. +.|.| .+|+||--||-|+..+- + ++.++.|.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~----k~L~d~~E~pMVRhEaAeALGaIa--~----e~~~~vL~ 257 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLI----KVLLDETEHPMVRHEAAEALGAIA--D----EDCVEVLK 257 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHH----HHHHhhhcchHHHHHHHHHHHhhc--C----HHHHHHHH
Confidence 4566666666666677766666777776666555553 33333 26677777777766553 2 33455666
Q ss_pred HhhcCCChhHHHHHHHHHH
Q psy8267 134 KLLQDKTTLVVGSAVMAFE 152 (645)
Q Consensus 134 ~lL~D~~~~V~~sav~~l~ 152 (645)
+.+.|..+.|.-++..+|.
T Consensus 258 e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALD 276 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH
Confidence 6667776666666655553
No 85
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.52 E-value=0.39 Score=47.60 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=97.0
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCC--HHHHHHHHHHHhCCCccccHHHHHHHHH
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN--QLIRASALRVLSSIRVPMIIPIVMLAIK 96 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N--~~iralALr~ls~I~~~ei~~~l~~~I~ 96 (645)
..-.+-.+..+..++.|-++++++....+....- .+..+.+-+.+-+ ..+=++|-+.++.+.... +.+.+.+.
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~ 126 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLE 126 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHH
Confidence 3445666788888999999998887655432221 3344555555433 355567777777763322 44566678
Q ss_pred hhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhh
Q psy8267 97 DSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDM 161 (645)
Q Consensus 97 ~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~l 161 (645)
+.+.|.++++|+.|+.++.+.++. +..+.+.+.+..++.|++..|.-+.--+|.++....++.
T Consensus 127 ~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 127 KWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp HHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 899999999999999999888776 445778888999999999999999989999998665543
No 86
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.06 E-value=0.25 Score=42.62 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=37.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHHhCCC-----ccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCch
Q psy8267 59 TFQRALKDPNQLIRASALRVLSSIR-----VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE 123 (645)
Q Consensus 59 sl~kDL~~~N~~iralALr~ls~I~-----~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~ 123 (645)
...+++.||.+-+||-||..|+++- ...-++.+..-....+.|+++||-=.|+-++.-+...+|+
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4456666777777777776666541 1122344444455556666666666666666666666665
No 87
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.85 E-value=0.41 Score=50.20 Aligned_cols=189 Identities=20% Similarity=0.231 Sum_probs=128.1
Q ss_pred HHHHHHHhCCCC-------cccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHH-----HHHHHHcCCCCHHH
Q psy8267 4 GTCCYMMAKGRD-------ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSI-----STFQRALKDPNQLI 71 (645)
Q Consensus 4 kkli~l~~~G~d-------vs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~i-----Nsl~kDL~~~N~~i 71 (645)
...+..+.+|++ +|...|-..|++-+.|.++--=.|-+++.+.+...|-.--++ -.+..-|.+++-.+
T Consensus 222 TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i 301 (526)
T COG5064 222 TWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI 301 (526)
T ss_pred HHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc
Confidence 346778889985 666788888999999999988889888877765444211222 23566788999999
Q ss_pred HHHHHHHHhCCCccc------cHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCC
Q psy8267 72 RASALRVLSSIRVPM------IIP-IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDK 139 (645)
Q Consensus 72 ralALr~ls~I~~~e------i~~-~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~ 139 (645)
..=|||.+|+|.+-. ++. -...+...+++++..-+||.|+-++..+-.-+-+++ .++++-+..+|...
T Consensus 302 qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a 381 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA 381 (526)
T ss_pred cCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH
Confidence 999999999985321 111 134677788999999999999999988876666653 25677788888776
Q ss_pred ChhHHHHHHHHHHHHC------hhhhhhh--HHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHh
Q psy8267 140 TTLVVGSAVMAFEEVC------PERIDMI--HKSYRKLCNLLVDVDE-WGQVFILNMLTRYAR 193 (645)
Q Consensus 140 ~~~V~~sav~~l~ei~------~~~~~li--~~~~~kL~~~L~~~~~-W~Qv~iL~lL~~y~r 193 (645)
+.-.---|.-|+.... |+-..++ .+.+..||+.|.-.+. --|+. |+.+....+
T Consensus 382 e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~-LD~~eniLk 443 (526)
T COG5064 382 EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA-LDAIENILK 443 (526)
T ss_pred HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh-HHHHHHHHh
Confidence 6655554544444332 3332222 2356678998876555 33443 666665443
No 88
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.71 E-value=14 Score=42.52 Aligned_cols=75 Identities=12% Similarity=0.239 Sum_probs=55.4
Q ss_pred ChhHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhcc-ccHHHHHH
Q psy8267 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISS-VDKAFVAA 371 (645)
Q Consensus 294 ~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~-~d~~~~~~ 371 (645)
++.+|..++.++.+++...|....+.+-.+|.-.++|..||..|..+|.. |+++ ...++.+..++.. .+.+++.-
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~-t~P~--~~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 493 STFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLME-TKPS--VALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCC--HHHHHHHHHHHhhcCcHHHHHH
Confidence 45799999999999998899888887777777778888999999999987 4444 3455555555543 34555443
No 89
>KOG1517|consensus
Probab=93.28 E-value=0.49 Score=56.11 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=93.5
Q ss_pred chHHHHHHhccCCchhHHH-HHHHHHHhcccCchHHHHHHHHHHHH---------cC---CCCHHHHHHHHHHHhCCCc-
Q psy8267 19 LFPAVVKNVVSKNIEVKKL-VYVYLARYAEEQQDLALLSISTFQRA---------LK---DPNQLIRASALRVLSSIRV- 84 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL-~Yl~l~~~~~~~~dl~lL~iNsl~kD---------L~---~~N~~iralALr~ls~I~~- 84 (645)
.||-|+|+++|+-.++|.+ +++-...++-..+=.+- +.|| |. .-++.-|++|-=.|+.|..
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~d-----LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQAD-----LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHH-----HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 6999999999999999986 55555555432111111 2344 22 2346889999888887622
Q ss_pred -----cc-cHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy8267 85 -----PM-IIPIVMLAIKDSSLD-MSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFE 152 (645)
Q Consensus 85 -----~e-i~~~l~~~I~~~l~d-~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ 152 (645)
.+ +-..++.-....++| +.|..|.-.++|+.+|+.-+++.. ....+.+..+|.|+-|.|.++|+.||.
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 11 112233334555677 479999999999999999888753 456788999999999999999999987
Q ss_pred HHC
Q psy8267 153 EVC 155 (645)
Q Consensus 153 ei~ 155 (645)
...
T Consensus 668 tfl 670 (1387)
T KOG1517|consen 668 TFL 670 (1387)
T ss_pred HHh
Confidence 654
No 90
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.22 E-value=0.76 Score=39.60 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcCc-h--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 92 MLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP-E--QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 92 ~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p-~--~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
...+.+.+.|+-|.||-.|..-+.++.+... . ..+.....+.+.|+|+|+.|=.+|+.++..++..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 3445667899999999999999999998655 2 3477888889999999999999999998888743
No 91
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.99 E-value=0.74 Score=45.08 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=55.0
Q ss_pred HHHHHcCCCCHHHHHHHHHHHhCCCccccHHH--HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH
Q psy8267 59 TFQRALKDPNQLIRASALRVLSSIRVPMIIPI--VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE 126 (645)
Q Consensus 59 sl~kDL~~~N~~iralALr~ls~I~~~ei~~~--l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~ 126 (645)
.+.+-..+++..+|-.|++++..+-..-++.. .++.+.-+..|+++++|++|...+..+++++|+.++
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 44556679999999999999988744443333 456677788999999999999999999999998763
No 92
>KOG4224|consensus
Probab=92.83 E-value=16 Score=39.22 Aligned_cols=176 Identities=21% Similarity=0.164 Sum_probs=96.4
Q ss_pred ccchHHHHHHhccCCchhHHHHHHHHHHhcc--cCchHHH--HHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccH----
Q psy8267 17 SDLFPAVVKNVVSKNIEVKKLVYVYLARYAE--EQQDLAL--LSISTFQRALKDPNQLIRASALRVLSSIRVPMII---- 88 (645)
Q Consensus 17 s~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~--~~~dl~l--L~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~---- 88 (645)
+...--++++-.+++...+|-.-=++..+-+ ++...+. =.+--+..-+++.|+.+|--+-+++|+|++.+-.
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 3344455665566666666644333333222 2211111 0112234456788888888888888888764322
Q ss_pred ----HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCc---hhH-HHHHHHHHHhhcCCChhHHHHHHHHHHH--HChhh
Q psy8267 89 ----PIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP---EQK-EELVLVIEKLLQDKTTLVVGSAVMAFEE--VCPER 158 (645)
Q Consensus 89 ----~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p---~~~-~~~~~~l~~lL~D~~~~V~~sav~~l~e--i~~~~ 158 (645)
|-+++.+..++.|+++-|+--|.+|+..+-.-.. +++ ..-++.+.+||.|+..-.+.+.+..+.. +.|-+
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN 325 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN 325 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence 3467778888888999999888888876653211 112 2346677788877654444445555533 33443
Q ss_pred hhhh--HHHHHHHHHHhcCC-CchhHHHHHHHHHHHH
Q psy8267 159 IDMI--HKSYRKLCNLLVDV-DEWGQVFILNMLTRYA 192 (645)
Q Consensus 159 ~~li--~~~~~kL~~~L~~~-~~W~Qv~iL~lL~~y~ 192 (645)
..+| .+..+.|+++|.-- +|=.|+.....|..++
T Consensus 326 e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 326 EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 3333 12344455555432 3335555555555444
No 93
>COG1470 Predicted membrane protein [Function unknown]
Probab=92.82 E-value=0.37 Score=52.59 Aligned_cols=68 Identities=21% Similarity=0.395 Sum_probs=56.0
Q ss_pred CCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCC-CcccCCCCceEEEEeEEecCCCCCCccEE
Q psy8267 535 SPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPE-IASIDPGLAVEVSLGLNLNDSTQPLSPRL 605 (645)
Q Consensus 535 ~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (645)
.|.-..+.+.+.|.++.||+++.+.+++ |.|..++-++. ||.|+||++-++.+.|.....+.+-.-++
T Consensus 395 aGee~~i~i~I~NsGna~LtdIkl~v~~---PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i 463 (513)
T COG1470 395 AGEEKTIRISIENSGNAPLTDIKLTVNG---PQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRI 463 (513)
T ss_pred CCccceEEEEEEecCCCccceeeEEecC---CccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEE
Confidence 5666788999999999999999999995 56777775554 78999999999999999888888774444
No 94
>KOG0915|consensus
Probab=92.80 E-value=34 Score=43.03 Aligned_cols=343 Identities=16% Similarity=0.170 Sum_probs=179.2
Q ss_pred cccchHHH----HHHhccCCchhHHHHHHHHHHhcccCch-----HHH-HHHHHHHHHcCCCCHHHHH---HHHHHHhCC
Q psy8267 16 ASDLFPAV----VKNVVSKNIEVKKLVYVYLARYAEEQQD-----LAL-LSISTFQRALKDPNQLIRA---SALRVLSSI 82 (645)
Q Consensus 16 vs~lf~~v----vkli~s~~~~~KkL~Yl~l~~~~~~~~d-----l~l-L~iNsl~kDL~~~N~~ira---lALr~ls~I 82 (645)
++.+|-|+ +.++.++-..+|--..+++.-+.+..+- -+. +-. ++-+-+.|--+-+|- .|.++++++
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~-~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWE-AAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 5567888999999999999988775432 111 111 222333444556664 567777775
Q ss_pred C-----------ccccHHHHHHHHH-hhcCCCChHHHHHHHHHHHHHhhcCchhH----HHHHHHHHHhhcCCChhHHHH
Q psy8267 83 R-----------VPMIIPIVMLAIK-DSSLDMSPYVRKTAAHAIPKLYSLDPEQK----EELVLVIEKLLQDKTTLVVGS 146 (645)
Q Consensus 83 ~-----------~~ei~~~l~~~I~-~~l~d~~pyVRK~Aalal~kl~~~~p~~~----~~~~~~l~~lL~D~~~~V~~s 146 (645)
. ..++...+.|++. +..-+..+-|||-++-++.++-+..+..+ +++++.+.+..+.-.|.|+.-
T Consensus 1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred HhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHH
Confidence 3 3466667777663 34457799999999999999999888754 567777777777777777652
Q ss_pred -HHHHHHHHChhhhh----------hhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCC
Q psy8267 147 -AVMAFEEVCPERID----------MIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDG 215 (645)
Q Consensus 147 -av~~l~ei~~~~~~----------li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~ 215 (645)
++.+ .++..+..+ .....+.++++.+.. -.-..++--+....|....-+. +.+++.+-.+
T Consensus 1192 ls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~---~vLeelip~l~el~R~sVgl~T---kvg~A~fI~~-- 1262 (1702)
T KOG0915|consen 1192 LSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDI---SVLEELIPRLTELVRGSVGLGT---KVGCASFISL-- 1262 (1702)
T ss_pred HHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH---HHHHHHHHHHHHHHhccCCCCc---chhHHHHHHH--
Confidence 2233 322221111 011112222222111 0000111111111121000000 0000000000
Q ss_pred CCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcC---ChHHHHHHHHHHH-HHh
Q psy8267 216 EDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLA---PRREVAIIAKALV-RLL 291 (645)
Q Consensus 216 ~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~---~~~~~~~~~~~L~-~lL 291 (645)
. ..+....|-|-.-.+++.+.|.+..+|++|.-.+++...|+. .++...+....+. .++
T Consensus 1263 ----------------L-~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l 1325 (1702)
T KOG0915|consen 1263 ----------------L-VQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLL 1325 (1702)
T ss_pred ----------------H-HHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 0 000000112223457888889999999999999999888763 2334445554444 444
Q ss_pred CCChhHHHHHHHHHHHHHhhcccchhhhhceE----EE-cCCCChHHHHHHHHHHHHcc--CcCCHHHHHHHHH----Hh
Q psy8267 292 RSSREVQTVVLTTIASLAVKRRALFVPYLKSF----YV-RSSDPTHVKTLKLELLTTLA--SETSIASILREFQ----TY 360 (645)
Q Consensus 292 ~s~~niryv~L~~l~~l~~~~p~~~~~~~~~f----~~-l~~d~~~Ir~~kLdlL~~L~--~~~Nv~~Il~EL~----~y 360 (645)
-+.+..+-++...+..++...++++..|.+.| |+ ..+++....-+==|+...++ ....++-...|.+ +-
T Consensus 1326 ~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~icen 1405 (1702)
T KOG0915|consen 1326 GKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICEN 1405 (1702)
T ss_pred ccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHH
Confidence 43333346677777778888888888887764 22 22222222222223333332 2334432223322 22
Q ss_pred hccc-cHHHHHHHHHHHHHHHhhccc
Q psy8267 361 ISSV-DKAFVAATVQAIGKCAANIAQ 385 (645)
Q Consensus 361 l~~~-d~~~~~~~i~~I~~la~k~~~ 385 (645)
+.++ .-.++..++++|...|.....
T Consensus 1406 i~nn~~w~lr~q~Akai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1406 ITNNESWKLRKQAAKAIRVIAEGLSS 1431 (1702)
T ss_pred hccchHHHHHHHHHHHHHHHcccccc
Confidence 2222 255777788888888776543
No 95
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.48 E-value=6.9 Score=41.14 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHH--HHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhc
Q psy8267 330 PTHVKTLKLELL--TTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANI 383 (645)
Q Consensus 330 ~~~Ir~~kLdlL--~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~ 383 (645)
+..||.++++-| +.|.+++.+..-+.-+...+...+.+++..++++|..+...|
T Consensus 40 ~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~ 95 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTH 95 (298)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 335555555554 344455555555555555444445555555555555555544
No 96
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.25 E-value=0.29 Score=56.88 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q psy8267 54 LLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIE 133 (645)
Q Consensus 54 lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~ 133 (645)
--..+.+.+.....+..-+-.+|++|||++.++.++.+.+.+..-- +.+..+|..|+.|+.++-..+|+.+ .+.+.
T Consensus 489 ~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v---~~~l~ 564 (618)
T PF01347_consen 489 PYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKV---REILL 564 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHH---HHHHH
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHH---HHHHH
Confidence 3444566666667888999999999999999998887754432211 4489999999999999977777654 34455
Q ss_pred HhhcC--CChhHHHHHHHHHHHHChhhh
Q psy8267 134 KLLQD--KTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 134 ~lL~D--~~~~V~~sav~~l~ei~~~~~ 159 (645)
+++.| +++.|..+|..++.+..|...
T Consensus 565 ~I~~n~~e~~EvRiaA~~~lm~~~P~~~ 592 (618)
T PF01347_consen 565 PIFMNTTEDPEVRIAAYLILMRCNPSPS 592 (618)
T ss_dssp HHHH-TTS-HHHHHHHHHHHHHT---HH
T ss_pred HHhcCCCCChhHHHHHHHHHHhcCCCHH
Confidence 65555 568899999998888767644
No 97
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=92.17 E-value=1 Score=47.41 Aligned_cols=195 Identities=17% Similarity=0.188 Sum_probs=127.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCCCcc-ccHHH------HHHHHHhhcCCCCh--HHHHHHHHHHHHHhh-cCch---
Q psy8267 57 ISTFQRALKDPNQLIRASALRVLSSIRVP-MIIPI------VMLAIKDSSLDMSP--YVRKTAAHAIPKLYS-LDPE--- 123 (645)
Q Consensus 57 iNsl~kDL~~~N~~iralALr~ls~I~~~-ei~~~------l~~~I~~~l~d~~p--yVRK~Aalal~kl~~-~~p~--- 123 (645)
+.-|.+-|.+++..+|--|+-+||+|.+. +.... .+.++..++.++.+ -.-|.|--++..+.+ ++|.
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 34566778999999999999999999543 22222 23556666666655 445788888999887 5553
Q ss_pred -hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC--h-hhhhhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcC
Q psy8267 124 -QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC--P-ERIDMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFT 197 (645)
Q Consensus 124 -~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~--~-~~~~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~ 197 (645)
.+....+.+.+|+...|+.|+.-|.-|+.-+. | +..+.+ .++-.+|+..|...+--.|.-+|+........
T Consensus 239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG--- 315 (526)
T COG5064 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG--- 315 (526)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec---
Confidence 35678899999999999999998887777665 2 222221 23456788888776666666677666443311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCC-
Q psy8267 198 DPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP- 276 (645)
Q Consensus 198 ~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~- 276 (645)
++. ..+.+++- -.++...++|.|.-..+.-||+.++.++..
T Consensus 316 --------~D~---------------------------QTqviI~~---G~L~a~~~lLs~~ke~irKEaCWTiSNITAG 357 (526)
T COG5064 316 --------SDD---------------------------QTQVIINC---GALKAFRSLLSSPKENIRKEACWTISNITAG 357 (526)
T ss_pred --------Ccc---------------------------ceehheec---ccHHHHHHHhcChhhhhhhhhheeecccccC
Confidence 000 00112221 134555677777777899999999887753
Q ss_pred -hHHHH-----HHHHHHHHHhC
Q psy8267 277 -RREVA-----IIAKALVRLLR 292 (645)
Q Consensus 277 -~~~~~-----~~~~~L~~lL~ 292 (645)
.+.+. .++.+|+.+|+
T Consensus 358 nteqiqavid~nliPpLi~lls 379 (526)
T COG5064 358 NTEQIQAVIDANLIPPLIHLLS 379 (526)
T ss_pred CHHHHHHHHhcccchHHHHHHH
Confidence 23332 25678888885
No 98
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.79 E-value=12 Score=41.44 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhhhceE
Q psy8267 279 EVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPYLKSF 323 (645)
Q Consensus 279 ~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~~~~f 323 (645)
++..+.+.|+.-|+ .+++++..+|+++..+....|+++.+|+.++
T Consensus 362 ~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sL 407 (415)
T PF12460_consen 362 ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSL 407 (415)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 45566677777775 6778999999999999999999999998754
No 99
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=91.69 E-value=34 Score=40.48 Aligned_cols=300 Identities=16% Similarity=0.188 Sum_probs=166.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCCCc------cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH----
Q psy8267 57 ISTFQRALKDPNQLIRASALRVLSSIRV------PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE---- 126 (645)
Q Consensus 57 iNsl~kDL~~~N~~iralALr~ls~I~~------~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~---- 126 (645)
+..+.+=|.+.|+....+|+++|.++.. ......+++.+.+.+..+++-++..|...++.+- .+++...
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~ 370 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVS 370 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHH
Confidence 4456667788899999999999988753 1222335677888998899999999888777764 6777543
Q ss_pred -HHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh--hhh--HHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhhhcCCCC
Q psy8267 127 -ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI--DMI--HKSYRKLCNLLVD-VDEWGQVFILNMLTRYARTQFTDPN 200 (645)
Q Consensus 127 -~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~--~li--~~~~~kL~~~L~~-~~~W~Qv~iL~lL~~y~r~~~~~P~ 200 (645)
++++.+..+|.|++.. ..++..+..++-+.- ..+ ..++..+.+.|.. .++=.+..++.++...+.. |.
T Consensus 371 ~GlIPkLv~LL~d~~~~--~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~----~r 444 (708)
T PF05804_consen 371 LGLIPKLVELLKDPNFR--EVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN----KR 444 (708)
T ss_pred CCCcHHHHHHhCCCchH--HHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC----HH
Confidence 5788899999987643 346677777774321 111 1244555565543 3444455555555554421 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh--H
Q psy8267 201 LNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR--R 278 (645)
Q Consensus 201 ~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~--~ 278 (645)
.-+ .+-+ +.-++.+++.+ ++ ...+.++..++.+...+++ .
T Consensus 445 naq--------lm~~--------------------------g~gL~~L~~ra---~~-~~D~lLlKlIRNiS~h~~~~k~ 486 (708)
T PF05804_consen 445 NAQ--------LMCE--------------------------GNGLQSLMKRA---LK-TRDPLLLKLIRNISQHDGPLKE 486 (708)
T ss_pred HHH--------HHHh--------------------------cCcHHHHHHHH---Hh-cccHHHHHHHHHHHhcCchHHH
Confidence 100 0000 00133444433 22 3456777777777655532 1
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhhc-cc-----chh-----hhhceEEEcCCCChHHHHHHHHHHHHccCc
Q psy8267 279 EVAIIAKALVRLLRSSREVQTVVLTTIASLAVKR-RA-----LFV-----PYLKSFYVRSSDPTHVKTLKLELLTTLASE 347 (645)
Q Consensus 279 ~~~~~~~~L~~lL~s~~niryv~L~~l~~l~~~~-p~-----~~~-----~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~ 347 (645)
.+...+..|++.+.+.. -...+++++..++... |+ +++ |++.........+..+-....-++..++..
T Consensus 487 ~f~~~i~~L~~~v~~~~-~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d 565 (708)
T PF05804_consen 487 LFVDFIGDLAKIVSSGD-SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD 565 (708)
T ss_pred HHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC
Confidence 23345566667664221 2345556666665432 22 222 344444322222234777777777777776
Q ss_pred CCHHHH------HHHHHHhhc--cccHHHHHHHHHHHHHHHhhccccHH------HHHHHHHHhhccCCh
Q psy8267 348 TSIASI------LREFQTYIS--SVDKAFVAATVQAIGKCAANIAQVTD------TCLTGLVSLLSYSDE 403 (645)
Q Consensus 348 ~Nv~~I------l~EL~~yl~--~~d~~~~~~~i~~I~~la~k~~~~~~------~~v~~ll~LL~~~~~ 403 (645)
..+... +..|.+-+. ..|.+|+-.++-...++... ++..+ ..+.-+++|+.+.+.
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~ 634 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNA 634 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCH
Confidence 554433 344444333 35788888887777766532 22221 233445666665554
No 100
>KOG0413|consensus
Probab=91.68 E-value=7.1 Score=46.44 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=75.5
Q ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHhCC----CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH---HH
Q psy8267 56 SISTFQRALK-DPNQLIRASALRVLSSI----RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK---EE 127 (645)
Q Consensus 56 ~iNsl~kDL~-~~N~~iralALr~ls~I----~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~---~~ 127 (645)
+.--+.+-+. |.-.-++-.|++.+.++ ....+.|.+.--++.+..|+-.-|||+++-++.++...+|-.. ..
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~ 656 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSK 656 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHH
Confidence 3344555554 44445666677776654 3455666666666778899999999999999999999999865 68
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 128 ~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
|.--+..+++|.+..|...|...+..+.
T Consensus 657 wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 657 WLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888776553
No 101
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.59 E-value=2.3 Score=48.28 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=86.5
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC--ccccHHHHHHHHH
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIR--VPMIIPIVMLAIK 96 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~--~~ei~~~l~~~I~ 96 (645)
.|-.++..+.. +..+|+|+--.+..|+..=|++.--++|++..-+.|.+..||..|+|.|..++ .++.+.-+..-+-
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 56667776664 68999999999999999999999999999988889999999999999999986 5689999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHHhhcCchh-HHHHHHHHH
Q psy8267 97 DSSLDMSPYVRKTAAHAIPKLYSLDPEQ-KEELVLVIE 133 (645)
Q Consensus 97 ~~l~d~~pyVRK~Aalal~kl~~~~p~~-~~~~~~~l~ 133 (645)
++|...++-.+..+=-++..+++.||-. ...++..|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999888887777777788888888864 344444443
No 102
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=91.50 E-value=0.42 Score=39.58 Aligned_cols=67 Identities=24% Similarity=0.385 Sum_probs=41.0
Q ss_pred CCceEEEEEEeeCCCCCccceEeeeCCCCCCCCccccc-CCCCcccCCCCceEEEEeEEecCCCCCCccEE
Q psy8267 536 PRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQP-FPEIASIDPGLAVEVSLGLNLNDSTQPLSPRL 605 (645)
Q Consensus 536 ~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (645)
|.-..+.++++|.++.+++++++.++ . |+|..... ...++.|+||++.++.+.+.......+-...|
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~--~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLS--L-PEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE-----TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEe--C-CCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 55678999999999999999999888 3 77888332 23455999999999888888777666554444
No 103
>KOG2025|consensus
Probab=91.33 E-value=4.3 Score=46.72 Aligned_cols=136 Identities=26% Similarity=0.239 Sum_probs=92.1
Q ss_pred cccchHHHHHHhccCCchhHHHHHHHHHHhccc----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCcc---ccH
Q psy8267 16 ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEE----QQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVP---MII 88 (645)
Q Consensus 16 vs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~----~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~---ei~ 88 (645)
+..+|-++++-..|++-.++.=+...+..+.++ +.++.=...-.+.+-+.|..|.+|--|+-+||..... +=.
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 456788999999999988888777777666653 3344445556777788999999999999999998632 222
Q ss_pred HHHHHHHHhh-cCCCChHHHHHHHHHHH-------HHh----------------------hcCchhHHHHHHHHHHhhcC
Q psy8267 89 PIVMLAIKDS-SLDMSPYVRKTAAHAIP-------KLY----------------------SLDPEQKEELVLVIEKLLQD 138 (645)
Q Consensus 89 ~~l~~~I~~~-l~d~~pyVRK~Aalal~-------kl~----------------------~~~p~~~~~~~~~l~~lL~D 138 (645)
+. ...++.+ =+|||+-||+.|..++. ++. ++.-..++..+..++.-|+|
T Consensus 163 ~v-~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnD 241 (892)
T KOG2025|consen 163 PV-VNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLND 241 (892)
T ss_pred cH-HHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhh
Confidence 32 2233333 37899999999987652 111 11111223455566777889
Q ss_pred CChhHHHHHHHHHH
Q psy8267 139 KTTLVVGSAVMAFE 152 (645)
Q Consensus 139 ~~~~V~~sav~~l~ 152 (645)
++..|-+|+.-++.
T Consensus 242 Re~sVk~A~~d~il 255 (892)
T KOG2025|consen 242 REFSVKGALVDAIL 255 (892)
T ss_pred hhhHHHHHHHHHHH
Confidence 99888887766553
No 104
>KOG1949|consensus
Probab=91.29 E-value=2 Score=49.15 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=87.3
Q ss_pred CchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHhC--------CCccccHHHHH-HHHH
Q psy8267 31 NIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKD-----PNQLIRASALRVLSS--------IRVPMIIPIVM-LAIK 96 (645)
Q Consensus 31 ~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~-----~N~~iralALr~ls~--------I~~~ei~~~l~-~~I~ 96 (645)
+-..-+.|=+|..-.-+.+-|+.--.=|-+.+|+-+ +..-+.+--=+++|. =++++|.-.+. +.+-
T Consensus 101 ks~~~~~geI~frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~ 180 (1005)
T KOG1949|consen 101 KSLMVYIGEIYFRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILW 180 (1005)
T ss_pred HHHHHHHhHHHHHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH
Confidence 334555565666555555666544444444444421 111112222233332 24566665554 5568
Q ss_pred hhcCCCChHHHHHHHHHHHHHhh-cCchh--------HHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHH
Q psy8267 97 DSSLDMSPYVRKTAAHAIPKLYS-LDPEQ--------KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKS 165 (645)
Q Consensus 97 ~~l~d~~pyVRK~Aalal~kl~~-~~p~~--------~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~ 165 (645)
+.+.-++..||..||+-+..+|. .+||. ++.=...+.+||.|+-|+|.+.|+-.++.+...-|++++++
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~ 258 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT 258 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH
Confidence 88999999999999999999997 47775 13335678899999999999998888887777777777664
No 105
>KOG1525|consensus
Probab=91.28 E-value=31 Score=43.28 Aligned_cols=160 Identities=14% Similarity=0.095 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHc--cCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHH---hhccCChh
Q psy8267 331 THVKTLKLELLTTL--ASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANI-AQVTDTCLTGLVS---LLSYSDEA 404 (645)
Q Consensus 331 ~~Ir~~kLdlL~~L--~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~-~~~~~~~v~~ll~---LL~~~~~~ 404 (645)
.+++..--++++.| +.++-+-.|+.+|..-+.+.+.++|.+++.-+|++-... ....+.|-++... -+.+....
T Consensus 236 ~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 236 SSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence 55666666777654 456666778889999999999999999999999875432 1222333333333 34455566
Q ss_pred hHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhccc--ccCCCchHHHHHHHHHhhcCCchHHHH
Q psy8267 405 VVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYS--HLVPALGPDVLRKAAITFVNEEDIVKL 482 (645)
Q Consensus 405 v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~--~~i~~~~~diLr~l~~~f~~e~~~vk~ 482 (645)
|.-+++..+++++.++|+..+.....+.--..+ .++..+....-+++.-. ..--.+.++++..+.++-.+-...||.
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~-~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~ 394 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAKASTILLALRERD-LDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRK 394 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhc-CChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHH
Confidence 888999999999999998765444333221111 23443332222333321 111112334888888888888899999
Q ss_pred HHHHhhhhh
Q psy8267 483 QVLNLAPVE 491 (645)
Q Consensus 483 ~iL~~~~~~ 491 (645)
+.+.-+++-
T Consensus 395 ~Am~~Laql 403 (1266)
T KOG1525|consen 395 QAMNGLAQL 403 (1266)
T ss_pred HHHHHHHHH
Confidence 999988853
No 106
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.24 E-value=5.4 Score=41.98 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhC--CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCch-h------
Q psy8267 54 LLSISTFQRALKDPNQLIRASALRVLSS--IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE-Q------ 124 (645)
Q Consensus 54 lL~iNsl~kDL~~~N~~iralALr~ls~--I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~-~------ 124 (645)
-+.-+-+...++++++.+|..|++++|- +-.++++..-+.-+.+.+...++-||-.|+.++.-+...++- .
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 3555666788899999999999999985 456778888777777788666999999999999888765432 1
Q ss_pred ------HHHHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 125 ------KEELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 125 ------~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
...+.+.+.+.|++.++.+...|+-++..+.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1356778888999999998888888887664
No 107
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.18 E-value=33 Score=39.32 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=77.0
Q ss_pred CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHH---HhhcCchh--HHHHHHHHHHhhcCCChhHHHHHHHHHHHHCh-
Q psy8267 83 RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPK---LYSLDPEQ--KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCP- 156 (645)
Q Consensus 83 ~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~k---l~~~~p~~--~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~- 156 (645)
+..-..+.+...+.+.+.++.|.||-.||-.+.. +.+-+.|. ...+-.++.+-|....|.|+++.+.|++.|..
T Consensus 597 r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 597 RGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred ccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhh
Confidence 4445556677888999999999999999986544 44445443 34566677788888999999999998887763
Q ss_pred hhhh----hhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 157 ERID----MIHKSYRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 157 ~~~~----li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
.+.+ .+...+..|..+|..-.+=.|..-+.++...+.
T Consensus 677 ~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~ 717 (975)
T COG5181 677 HRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICM 717 (975)
T ss_pred hcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHh
Confidence 2221 234444556666665555566777777777763
No 108
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.14 E-value=1.1 Score=38.95 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcCc----hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh----hhhHHHHHHHHHHhcCCC
Q psy8267 106 VRKTAAHAIPKLYSLDP----EQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI----DMIHKSYRKLCNLLVDVD 177 (645)
Q Consensus 106 VRK~Aalal~kl~~~~p----~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~----~li~~~~~kL~~~L~~~~ 177 (645)
-||-+.+|+..+----+ +..+.+++.+.+++.|+|..|...|.-++..++.... ..++..|..|++.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 37777777776643222 2346788888899999999999999999998874321 334556777788778877
Q ss_pred chhH
Q psy8267 178 EWGQ 181 (645)
Q Consensus 178 ~W~Q 181 (645)
|=.|
T Consensus 82 ~~Vr 85 (97)
T PF12755_consen 82 ENVR 85 (97)
T ss_pred hhHH
Confidence 6544
No 109
>KOG1949|consensus
Probab=90.80 E-value=2.3 Score=48.75 Aligned_cols=137 Identities=24% Similarity=0.193 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhC---CCcccc--------HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcC
Q psy8267 53 ALLSISTFQRALKDPNQLIRASALRVLSS---IRVPMI--------IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD 121 (645)
Q Consensus 53 ~lL~iNsl~kDL~~~N~~iralALr~ls~---I~~~ei--------~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~ 121 (645)
..|.-.-+-+.|+-+|..+|..|+..+-+ ++.|+. ++--...+.+++.|+-|-||..|..+++|++.+.
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 33666778899999999999999998876 455544 4444567788999999999999999999988765
Q ss_pred chh-----HHHHHH-HHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHH----HhcCCCchhHHHHHHHHHHH
Q psy8267 122 PEQ-----KEELVL-VIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCN----LLVDVDEWGQVFILNMLTRY 191 (645)
Q Consensus 122 p~~-----~~~~~~-~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~----~L~~~~~W~Qv~iL~lL~~y 191 (645)
=+. +.++.. ++.++-.|....|..+++..+.++.-.. +-|+.+..++. .|.|..+-..+...++|.+.
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 333 333333 3334445666777777777776664211 12333333333 34566666667777776655
No 110
>KOG1020|consensus
Probab=90.80 E-value=1 Score=55.50 Aligned_cols=109 Identities=14% Similarity=0.254 Sum_probs=64.1
Q ss_pred chhhhhceEE-EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhc----cccHHHHHHHHHHHHHHHhhccccHHH
Q psy8267 315 LFVPYLKSFY-VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYIS----SVDKAFVAATVQAIGKCAANIAQVTDT 389 (645)
Q Consensus 315 ~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~----~~d~~~~~~~i~~I~~la~k~~~~~~~ 389 (645)
.|.+|++.+. ++..+-+.+|.+||..|..++..+-.-..-.+.+.-+. +....+|+.++.-+|+...-+|+....
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 4555665554 44455566666666666666666544433344444332 233456666666666666666666666
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcc
Q psy8267 390 CLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEA 423 (645)
Q Consensus 390 ~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~ 423 (645)
|.+.+..-+.+.|-.|..-++..+|+|...+|+.
T Consensus 893 yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 893 YYDQIIERILDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence 6666666666666566666666666666666653
No 111
>KOG1822|consensus
Probab=90.58 E-value=26 Score=44.92 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCC----Cc-cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh-----
Q psy8267 55 LSISTFQRALKDPNQLIRASALRVLSSI----RV-PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ----- 124 (645)
Q Consensus 55 L~iNsl~kDL~~~N~~iralALr~ls~I----~~-~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~----- 124 (645)
+..--+..+|..+||..||.|-.+++.+ +. +-++...-..++++.+-.+|+-|---.+|+..+++..-..
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 4555567788999999999998888875 22 2234444445566666667777777777888777643222
Q ss_pred HHHHHHHHHHhhcCCCh-hHHHHHHHHHHHH
Q psy8267 125 KEELVLVIEKLLQDKTT-LVVGSAVMAFEEV 154 (645)
Q Consensus 125 ~~~~~~~l~~lL~D~~~-~V~~sav~~l~ei 154 (645)
...-+..+..+-.|+++ .|...++.++.-+
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i 986 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALI 986 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHH
Confidence 23445577888889776 7777888777644
No 112
>KOG2956|consensus
Probab=90.54 E-value=3.1 Score=45.70 Aligned_cols=188 Identities=15% Similarity=0.187 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHhhcc-cchhhhhceE----E-EcCC-CChHHHHHHHHHHHHccCc------CCHHHHHHHHHHhhc
Q psy8267 296 EVQTVVLTTIASLAVKRR-ALFVPYLKSF----Y-VRSS-DPTHVKTLKLELLTTLASE------TSIASILREFQTYIS 362 (645)
Q Consensus 296 niryv~L~~l~~l~~~~p-~~~~~~~~~f----~-~l~~-d~~~Ir~~kLdlL~~L~~~------~Nv~~Il~EL~~yl~ 362 (645)
.-+--+|..|..+..... .+-++|+..+ | ++.+ .+..+|..+|.+|..||+. +..+..+..+++-..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 455667887777765442 3445565553 3 5555 7789999999999999986 456677778887777
Q ss_pred cccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCC--cch---HHHHHHHHHhhcc
Q psy8267 363 SVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQP--EAY---TDIIRHMVRLSDS 437 (645)
Q Consensus 363 ~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p--~~~---~~~i~~L~~~l~~ 437 (645)
+.+++..+.+.+.--+.+..+- -..|+..+..++-++++...--++..+..++.+-+ ++. ..++.-+.+..++
T Consensus 382 ds~~~v~~~Aeed~~~~las~~--P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S 459 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTTLASHL--PLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS 459 (516)
T ss_pred CCchhHHHHHHHHHHHHHHhhC--chhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC
Confidence 7777777666655444443332 23577777777777665555555555555655433 111 1222222333333
Q ss_pred CChHHHHHHHHHHHhcccccCCCchHHHHHHHHHhhcCCchHHHHHHHHhhhhhcc
Q psy8267 438 ITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAA 493 (645)
Q Consensus 438 i~~~~ak~~~iwilGEy~~~i~~~~~diLr~l~~~f~~e~~~vk~~iL~~~~~~a~ 493 (645)
.++.+|..++|++=--...+. ..+ +.+++.. =.-.|.-+++..++||.
T Consensus 460 -~SS~VRKtaVfCLVamv~~vG--~~~----mePhL~~-Lt~sk~~LlqlYinRa~ 507 (516)
T KOG2956|consen 460 -TSSTVRKTAVFCLVAMVNRVG--MEE----MEPHLEQ-LTSSKLNLLQLYINRAS 507 (516)
T ss_pred -chHHhhhhHHHhHHHHHHHHh--HHh----hhhHhhh-ccHHHHHHHHHHHHHhh
Confidence 356677777777643322221 011 1111111 12356667777777765
No 113
>KOG0915|consensus
Probab=90.45 E-value=59 Score=41.08 Aligned_cols=161 Identities=16% Similarity=0.185 Sum_probs=104.6
Q ss_pred chHHHHHHhccCCchhHHHHHHHH---HHhcccCchHHHH---HHHHHHHHcCCCCHHHHHHHHHHHhCC---Cccc---
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYL---ARYAEEQQDLALL---SISTFQRALKDPNQLIRASALRVLSSI---RVPM--- 86 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l---~~~~~~~~dl~lL---~iNsl~kDL~~~N~~iralALr~ls~I---~~~e--- 86 (645)
..-...+.+.|+|.+.||-+.+.+ .+|...+++..++ +--+|..-|.|.||.++-.|=|-||=+ +...
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 334445677899999999988754 4555556663221 125677788999999999997777531 1100
Q ss_pred ------------------------------------------------------cHHHHHHHHHhhcCCC-ChHHHHHHH
Q psy8267 87 ------------------------------------------------------IIPIVMLAIKDSSLDM-SPYVRKTAA 111 (645)
Q Consensus 87 ------------------------------------------------------i~~~l~~~I~~~l~d~-~pyVRK~Aa 111 (645)
=-|.++--..++.+|. ...=||-||
T Consensus 899 ~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaA 978 (1702)
T KOG0915|consen 899 SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAA 978 (1702)
T ss_pred HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchh
Confidence 0122333334556665 666789999
Q ss_pred HHHHHHhhcCchhH----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHH----HHHHHHHhcCCCchh
Q psy8267 112 HAIPKLYSLDPEQK----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKS----YRKLCNLLVDVDEWG 180 (645)
Q Consensus 112 lal~kl~~~~p~~~----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~----~~kL~~~L~~~~~W~ 180 (645)
.++..+....-+.. ..++|++..-=-|+|+.|..+-.+-...+.+|.-..+-.+ ++.|+..+. +.+|-
T Consensus 979 fGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt-~kewR 1054 (1702)
T KOG0915|consen 979 FGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT-SKEWR 1054 (1702)
T ss_pred hchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc-chhHH
Confidence 99999987765543 4677777777789999999988887778888754333333 333433333 46785
No 114
>KOG1242|consensus
Probab=89.66 E-value=43 Score=38.26 Aligned_cols=295 Identities=15% Similarity=0.136 Sum_probs=162.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCCCc---cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH---HHH
Q psy8267 55 LSISTFQRALKDPNQLIRASALRVLSSIRV---PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK---EEL 128 (645)
Q Consensus 55 L~iNsl~kDL~~~N~~iralALr~ls~I~~---~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~---~~~ 128 (645)
-.+-.+-.-+.-|.+.++-.-..++..... ..=...+.+.+.+++...+--=|+.|+.++..+.+-.+-.. ..+
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~ 175 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGF 175 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhH
Confidence 444455566677777777665555554322 22234455566777777777778888888888776554432 356
Q ss_pred HHHHHHhhcCCChhHHH-HHHHHHH----HHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCC
Q psy8267 129 VLVIEKLLQDKTTLVVG-SAVMAFE----EVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNE 203 (645)
Q Consensus 129 ~~~l~~lL~D~~~~V~~-sav~~l~----ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~ 203 (645)
+..+.+...|++..-.. .+..++. .+.+..-..+.+.+..++....+..+-.+-..........+.. ++..
T Consensus 176 l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~--~~~a-- 251 (569)
T KOG1242|consen 176 LDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL--SAYA-- 251 (569)
T ss_pred HHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc--Ccch--
Confidence 77777788886543222 2222222 2222222233344455555555544433222222221111110 1110
Q ss_pred CCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhh-hhhhcC--CChHHHHHHHHHHHhcCChH--
Q psy8267 204 NDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNA-KPLLQS--RNAAVVMAVAQLFHHLAPRR-- 278 (645)
Q Consensus 204 ~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~-~~ll~s--~n~aVv~ea~~~i~~l~~~~-- 278 (645)
...++..+ ..+... +......+.+.+...++|.+
T Consensus 252 -----------------------------------------VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs 290 (569)
T KOG1242|consen 252 -----------------------------------------VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS 290 (569)
T ss_pred -----------------------------------------hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH
Confidence 01111111 111222 33445555566666666642
Q ss_pred -HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhh--cccchhhhhceEE-EcCCCChHHHHHHHHHHH-----HccCcC
Q psy8267 279 -EVAIIAKALVRLL-RSSREVQTVVLTTIASLAVK--RRALFVPYLKSFY-VRSSDPTHVKTLKLELLT-----TLASET 348 (645)
Q Consensus 279 -~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~--~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~-----~L~~~~ 348 (645)
.+..+++.+..-| .+++++|-.+..+|.++... +|+ +++++.... |.. ||+-=-...++.|+ .-+++.
T Consensus 291 ~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~-dp~~~~~e~~~~L~~ttFV~~V~~p 368 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALA-DPSCYTPECLDSLGATTFVAEVDAP 368 (569)
T ss_pred HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhc-CcccchHHHHHhhcceeeeeeecch
Confidence 2456777777777 58999999999999888653 444 677777665 443 34311223444443 245566
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHH
Q psy8267 349 SIASILREFQTYISSVDKAFVAATVQAIGKCAANI--AQVTDTCLTGLVS 396 (645)
Q Consensus 349 Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~--~~~~~~~v~~ll~ 396 (645)
....++.=|..=+.+.+...++.++..++.++.-. |.+..-++.-|+.
T Consensus 369 sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp 418 (569)
T KOG1242|consen 369 SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLP 418 (569)
T ss_pred hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhh
Confidence 67777776666677778889999999999888654 4444444444433
No 115
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.73 E-value=26 Score=38.24 Aligned_cols=200 Identities=14% Similarity=0.138 Sum_probs=129.9
Q ss_pred HHhCCChhHHHHHHHHHHHHHhhccc---chhhhhceEEE--c--CCCChHHHHHHHHHHHHccCcC-CH----HHHHHH
Q psy8267 289 RLLRSSREVQTVVLTTIASLAVKRRA---LFVPYLKSFYV--R--SSDPTHVKTLKLELLTTLASET-SI----ASILRE 356 (645)
Q Consensus 289 ~lL~s~~niryv~L~~l~~l~~~~p~---~~~~~~~~f~~--l--~~d~~~Ir~~kLdlL~~L~~~~-Nv----~~Il~E 356 (645)
.+|+.++++|-.+++.+-.+...... +.+-|+..|.+ + .+....=|..||.+...+.+-. .. ..|++-
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 35566688999898888776653322 33456666653 2 2333557888999998887763 33 567888
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHhhccccHHHH--HHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHH-----
Q psy8267 357 FQTYISSVDKAFVAATVQAIGKCAANIAQVTDTC--LTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIR----- 429 (645)
Q Consensus 357 L~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~--v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~----- 429 (645)
+..-+.+.|+.++..++..++.++...|+...+| +.++++.+..+.-.+.+-++.++-.++ +.|+.+.++..
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLE 191 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHH
Confidence 8888888899999999999999999998865433 556666665533235555556666666 46766543322
Q ss_pred HHHHhhccC-----C-hH------HHHHHHHHHHhcccccCCCchH--HHHHHHHHhhcCCchHHHHHHHHhhh
Q psy8267 430 HMVRLSDSI-----T-VP------TARAAILWLLGEYSHLVPALGP--DVLRKAAITFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 430 ~L~~~l~~i-----~-~~------~ak~~~iwilGEy~~~i~~~~~--diLr~l~~~f~~e~~~vk~~iL~~~~ 489 (645)
.+..-+-+. + .. .++.++.-++--+...+.=..+ .-++.++..+.-..+++|-.|+..+.
T Consensus 192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222212111 1 11 2345667777777665432111 56888888888888999999999886
No 116
>KOG2062|consensus
Probab=88.60 E-value=1.9 Score=49.58 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=92.1
Q ss_pred HHHHhCCCCcccchHHHHHHhccCCch-hHHHHH--HHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC--
Q psy8267 7 CYMMAKGRDASDLFPAVVKNVVSKNIE-VKKLVY--VYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS-- 81 (645)
Q Consensus 7 i~l~~~G~dvs~lf~~vvkli~s~~~~-~KkL~Y--l~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~-- 81 (645)
+++.++|.--...+-++......+-++ ++|=.- ++|..|..++ .+- +-+.+-+.|.||..|....-+++.
T Consensus 473 MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe--~Ad---~lI~el~~dkdpilR~~Gm~t~alAy 547 (929)
T KOG2062|consen 473 MGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE--DAD---PLIKELLRDKDPILRYGGMYTLALAY 547 (929)
T ss_pred hhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh--hhH---HHHHHHhcCCchhhhhhhHHHHHHHH
Confidence 567888888888888888877744443 555433 3556665542 222 334444567799999654433321
Q ss_pred C--CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHCh
Q psy8267 82 I--RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQ-DKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 82 I--~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~-D~~~~V~~sav~~l~ei~~ 156 (645)
. +....+..+. +=..+|.+..|||.|+.|+.-+.-.||++.+.. .++|. .-||-|...|.+++.-.|.
T Consensus 548 ~GTgnnkair~lL---h~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~----V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 548 VGTGNNKAIRRLL---HVAVSDVNDDVRRAAVIALGFVLFRDPEQLPST----VSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred hccCchhhHHHhh---cccccccchHHHHHHHHHheeeEecChhhchHH----HHHHhhhcChhhhhhHHHHHhhhhc
Confidence 2 2233333332 336789999999999999999988999986543 45565 4789999999999887774
No 117
>KOG2062|consensus
Probab=88.17 E-value=2.9 Score=48.25 Aligned_cols=137 Identities=20% Similarity=0.196 Sum_probs=88.7
Q ss_pred HHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHH-HHhccc-CchHHHHHHHHH-HHHcCCCCHHHHHHHHHHHhCCC
Q psy8267 7 CYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYL-ARYAEE-QQDLALLSISTF-QRALKDPNQLIRASALRVLSSIR 83 (645)
Q Consensus 7 i~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l-~~~~~~-~~dl~lL~iNsl-~kDL~~~N~~iralALr~ls~I~ 83 (645)
|++.+.|..= ..=+-+-++...+|.-+|.-|-+.+ .-|... +.. +|-.+ .=..+|.|..+|-.|..+||=|.
T Consensus 509 iaL~~ygrqe-~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk----air~lLh~aVsD~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 509 IALVVYGRQE-DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK----AIRRLLHVAVSDVNDDVRRAAVIALGFVL 583 (929)
T ss_pred HHHHHhhhhh-hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh----hHHHhhcccccccchHHHHHHHHHheeeE
Confidence 4555555421 1223345566788888888776644 233322 222 11122 22358999999999999999875
Q ss_pred ccccHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy8267 84 VPMIIPIVMLAIKDSSLDM-SPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFE 152 (645)
Q Consensus 84 ~~ei~~~l~~~I~~~l~d~-~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ 152 (645)
..+ |...+.+..+|+.+ +|+||--||+|+.=.+.-.- ..+.++.|+.|..|....|.-+|+.++.
T Consensus 584 ~~d--p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG--~~eAi~lLepl~~D~~~fVRQgAlIa~a 649 (929)
T KOG2062|consen 584 FRD--PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG--LKEAINLLEPLTSDPVDFVRQGALIALA 649 (929)
T ss_pred ecC--hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC--cHHHHHHHhhhhcChHHHHHHHHHHHHH
Confidence 444 33444455566554 99999999999886654222 2446788899999999999888876654
No 118
>KOG2140|consensus
Probab=87.90 E-value=6 Score=44.04 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=88.6
Q ss_pred HHHHHHHccCcCCHHHHHHHHHH---------hhcc------ccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhc--
Q psy8267 337 KLELLTTLASETSIASILREFQT---------YISS------VDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLS-- 399 (645)
Q Consensus 337 kLdlL~~L~~~~Nv~~Il~EL~~---------yl~~------~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~-- 399 (645)
.+.=|.+=+|.+|+..|++||.. |+++ +.+.|-.-...-++.+-.|||...+..+.-|+-.+.
T Consensus 167 sInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~r~ 246 (739)
T KOG2140|consen 167 SINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFKRS 246 (739)
T ss_pred HhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Confidence 34445666889999999999984 2222 122233333344566777899998877776544443
Q ss_pred -cCChhhHH-HHHHHHHHHhhcCCcchHHHHHHH-HHhhccCChHHHHHHHHHHHhcccccCCCchH-------HHHHHH
Q psy8267 400 -YSDEAVVA-ESVVVIKNLLQTQPEAYTDIIRHM-VRLSDSITVPTARAAILWLLGEYSHLVPALGP-------DVLRKA 469 (645)
Q Consensus 400 -~~~~~v~~-e~v~~i~~il~~~p~~~~~~i~~L-~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~-------diLr~l 469 (645)
..++++.. .++..|-.++ ++.-.|+-++-.+ .-+|+..++..+..+ +-++-|.|-....++| +=||.+
T Consensus 247 f~RnDk~~c~~~~kfiahLi-nq~VahEIv~Leil~lLLe~PTddSveva-I~flkecGakL~~VSpr~~n~IfErlR~I 324 (739)
T KOG2140|consen 247 FRRNDKVSCLNASKFIAHLI-NQQVAHEIVALEILTLLLERPTDDSVEVA-IAFLKECGAKLAEVSPRALNGIFERLRYI 324 (739)
T ss_pred hcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchHHHH-HHHHHHHHHHHHHhChHHHhHHHHHHHHH
Confidence 23455433 3334444444 3444455444444 345677666555554 3445566555444444 334444
Q ss_pred HHhhcCCchHHHHHHHHhhhhhcccCCC
Q psy8267 470 AITFVNEEDIVKLQVLNLAPVEAAGITT 497 (645)
Q Consensus 470 ~~~f~~e~~~vk~~iL~~~~~~a~~y~~ 497 (645)
+. =...+..||..|=+++..|--+|-.
T Consensus 325 Lh-e~Eld~rvqy~iEtlf~iRkdkfk~ 351 (739)
T KOG2140|consen 325 LH-EGELDRRVQYMIETLFQIRKDKFKS 351 (739)
T ss_pred Hh-HhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 42 1123567888999999866555543
No 119
>KOG2274|consensus
Probab=87.40 E-value=73 Score=38.18 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHhCCCccccHHHHHH----HHHhhcCCCChHHHHHHHHHHHHHhhcCchhH----HHHHHHHHHhh
Q psy8267 65 KDPNQLIRASALRVLSSIRVPMIIPIVML----AIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK----EELVLVIEKLL 136 (645)
Q Consensus 65 ~~~N~~iralALr~ls~I~~~ei~~~l~~----~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~----~~~~~~l~~lL 136 (645)
.|.-|.+|..|+|+++..+.+..+....+ .+...+.+.+.-|=---.-++....+.||+.. ....+.+..+.
T Consensus 501 ~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 501 MDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF 580 (1005)
T ss_pred cCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence 45667889999999988877655544444 44445556676776666677888888888753 12233222222
Q ss_pred --cCCChhHHHHHHHHHHHHChhh--h-hhhHHHHHHHHHHhcCCC----chhHHHHHHHHHHHHhh
Q psy8267 137 --QDKTTLVVGSAVMAFEEVCPER--I-DMIHKSYRKLCNLLVDVD----EWGQVFILNMLTRYART 194 (645)
Q Consensus 137 --~D~~~~V~~sav~~l~ei~~~~--~-~li~~~~~kL~~~L~~~~----~W~Qv~iL~lL~~y~r~ 194 (645)
..+||.|+.-+--.|.+++... . ......+..+++.|...+ +=.+-..+++|+...|.
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~ 647 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN 647 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc
Confidence 3466777777777777777521 1 122334555666665433 33455566666666654
No 120
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=86.49 E-value=1.6 Score=43.08 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=60.0
Q ss_pred HHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHH
Q psy8267 59 TFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLV 131 (645)
Q Consensus 59 sl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~ 131 (645)
.+.+=+.|+|+..|-.|+-++......+-.+.+...+...+.|++.||||..+-++..+++.+|+.+.+++..
T Consensus 124 ~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 124 LLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3445567999999999998888776667778888888899999999999999999999999999988766554
No 121
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.40 E-value=17 Score=42.32 Aligned_cols=109 Identities=8% Similarity=0.135 Sum_probs=69.1
Q ss_pred cCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-C---ChhHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChH
Q psy8267 257 QSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-S---SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTH 332 (645)
Q Consensus 257 ~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s---~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~ 332 (645)
...+.-..+-+++++.+++.+ .+++.|..++. . +..+|..|+.++.+++...|+.+.+-+-.+|.-.++|..
T Consensus 500 ~~~~~~~~~~~LkaLgN~g~~----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~E 575 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLGHP----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPE 575 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT-G----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HH
T ss_pred hccCHHHHHHHHHHhhccCCc----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChh
Confidence 344555666677888777643 34566666664 2 458999999999888887887776666666666677788
Q ss_pred HHHHHHHHHHHccCcCCHHHHHHHHHHhhcc-ccHHHHHHH
Q psy8267 333 VKTLKLELLTTLASETSIASILREFQTYISS-VDKAFVAAT 372 (645)
Q Consensus 333 Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~-~d~~~~~~~ 372 (645)
||..|+.+|.. |+++ ..+++.+..++.. .+.+++.-+
T Consensus 576 vRiaA~~~lm~-~~P~--~~~l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 576 VRIAAYLILMR-CNPS--PSVLQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp HHHHHHHHHHH-T-----HHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHh-cCCC--HHHHHHHHHHHhhCchHHHHHHH
Confidence 99999988887 5555 5566766666643 455555443
No 122
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.76 E-value=1.1 Score=30.09 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHCh
Q psy8267 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 128 ~~~~l~~lL~D~~~~V~~sav~~l~ei~~ 156 (645)
+++.+.++++|+++.|..+|+.++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36778899999999999999999887753
No 123
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=85.62 E-value=18 Score=35.07 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=54.2
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 93 LAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 93 ~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
+.+.+...|+++++|+.|..+..+.+.. ....+.+.+.+..++.|++..|.-+..-++.++....+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 4567788999999999999999998876 22356778889999999999999988888888875433
No 124
>KOG0211|consensus
Probab=85.49 E-value=50 Score=39.37 Aligned_cols=250 Identities=17% Similarity=0.147 Sum_probs=146.6
Q ss_pred cccchHHHHHHhccCCchhHHHHHHHHHHhccc--CchHHHHHHHHHHHHcCCCCHHHHHHHH-------HHHhCCCccc
Q psy8267 16 ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEE--QQDLALLSISTFQRALKDPNQLIRASAL-------RVLSSIRVPM 86 (645)
Q Consensus 16 vs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~--~~dl~lL~iNsl~kDL~~~N~~iralAL-------r~ls~I~~~e 86 (645)
.+..+|.+-.++.+++...|..--......... .+...-.-.--+..-++|..+.+|..-+ .+...+|..-
T Consensus 396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred hhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 355678888888888888776543333333211 0110000111122335666666665555 4445567788
Q ss_pred cHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh-cCchhH-HHHHHHHHHhhcCCChhHHHHHHHHHHHHChh---hhhh
Q psy8267 87 IIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS-LDPEQK-EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE---RIDM 161 (645)
Q Consensus 87 i~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~-~~p~~~-~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~---~~~l 161 (645)
..+.+.+.+-.+..|.+.-||.+..-.++.+.. .+-+.. +.+.+.+...|.|....+.-+|..-+..++.. .| .
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w-~ 554 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW-A 554 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch-h
Confidence 888889999999999988899888877766554 232222 44555666666676666666666666555532 23 2
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccccccccc
Q psy8267 162 IHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTEL 241 (645)
Q Consensus 162 i~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 241 (645)
.+...++++....+.+-|....++..+..+.. .+++
T Consensus 555 ~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~------------------v~g~-------------------------- 590 (759)
T KOG0211|consen 555 RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE------------------VLGQ-------------------------- 590 (759)
T ss_pred HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH------------------Hhcc--------------------------
Confidence 34445666666665555555666665555441 1110
Q ss_pred ChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHh-C-CChhHHHHHHHHHHHHHh
Q psy8267 242 DPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR---REVAIIAKALVRLL-R-SSREVQTVVLTTIASLAV 310 (645)
Q Consensus 242 d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~---~~~~~~~~~L~~lL-~-s~~niryv~L~~l~~l~~ 310 (645)
+...+.++.-+..+.....+.|.+.+++.+-.+.+. +..+.-+.++...| . .+.|+||.+..+...+..
T Consensus 591 ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 591 EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 011244555555666778889999999977654321 23344444444444 3 556999999998877765
No 125
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.35 E-value=2.2 Score=47.74 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=63.0
Q ss_pred HhCCCCcccchHHHHHHhccCC-chhHHHHHH--HHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHH-----HHHHHhC
Q psy8267 10 MAKGRDASDLFPAVVKNVVSKN-IEVKKLVYV--YLARYAEEQQDLALLSISTFQRALKDPNQLIRAS-----ALRVLSS 81 (645)
Q Consensus 10 ~~~G~dvs~lf~~vvkli~s~~-~~~KkL~Yl--~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iral-----ALr~ls~ 81 (645)
.++|---+...-++......+. -.+||=.-+ ++..|.. ++++-=.|| +-+.|.++..|.. ||-..|.
T Consensus 473 ~mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe~add~I~---ell~d~ds~lRy~G~fs~alAy~GT 547 (926)
T COG5116 473 LMLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGR--QEMADDYIN---ELLYDKDSILRYNGVFSLALAYVGT 547 (926)
T ss_pred eeecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HHHHHHHHH---HHhcCchHHhhhccHHHHHHHHhcC
Confidence 3444444444444444444333 335554444 3334433 343333333 3345556666642 3333222
Q ss_pred CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHC
Q psy8267 82 IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQ-DKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~-D~~~~V~~sav~~l~ei~ 155 (645)
+...++..+ ++=..+|.+..|||.|+.|+.-++-.||+.+... .++|. ..|+-|......++.--|
T Consensus 548 -gn~~vv~~l---Lh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~t----velLs~shN~hVR~g~AvaLGiac 614 (926)
T COG5116 548 -GNLGVVSTL---LHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGT----VELLSESHNFHVRAGVAVALGIAC 614 (926)
T ss_pred -CcchhHhhh---heeecccCchHHHHHHHHheeeeEecCcchhhHH----HHHhhhccchhhhhhhHHHhhhhh
Confidence 222333332 2335677777788888777776666676654322 23333 345555554444444333
No 126
>KOG1991|consensus
Probab=85.18 E-value=97 Score=37.50 Aligned_cols=432 Identities=14% Similarity=0.192 Sum_probs=218.9
Q ss_pred CCcccchHHHHHHhccCC--chhHHHHHHHHHHhcc----cC----------chHHHHHHHHHHHHcCCCCHHHHHHH--
Q psy8267 14 RDASDLFPAVVKNVVSKN--IEVKKLVYVYLARYAE----EQ----------QDLALLSISTFQRALKDPNQLIRASA-- 75 (645)
Q Consensus 14 ~dvs~lf~~vvkli~s~~--~~~KkL~Yl~l~~~~~----~~----------~dl~lL~iNsl~kDL~~~N~~iralA-- 75 (645)
+....+.+.+.+.+++.+ ..+|+.+-+|+...-. .. +|-=-++-+-+..-+-..++.+|..=
T Consensus 32 ~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~ 111 (1010)
T KOG1991|consen 32 EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTA 111 (1010)
T ss_pred hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 455666677888887665 5579999999876522 11 12122444555555556677888533
Q ss_pred -HHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCc----h-------hHHHHHH----HHHHhhcCC
Q psy8267 76 -LRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP----E-------QKEELVL----VIEKLLQDK 139 (645)
Q Consensus 76 -Lr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p----~-------~~~~~~~----~l~~lL~D~ 139 (645)
|+.+=+=.-|+=.+.+.+-++..+.+.+.-.==.|.+|+..+++.+. + .++.+.+ +...+|.+.
T Consensus 112 ~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~ 191 (1010)
T KOG1991|consen 112 CLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQE 191 (1010)
T ss_pred HHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhcccc
Confidence 33333334455557788888999988876666688888877776432 2 2334444 444577777
Q ss_pred ChhHHHH---HHHHHHHHC----hhh---hhhhHHHHHHHHHHhcC---------------CCchh------HHHHHHHH
Q psy8267 140 TTLVVGS---AVMAFEEVC----PER---IDMIHKSYRKLCNLLVD---------------VDEWG------QVFILNML 188 (645)
Q Consensus 140 ~~~V~~s---av~~l~ei~----~~~---~~li~~~~~kL~~~L~~---------------~~~W~------Qv~iL~lL 188 (645)
+..++-- .+..|..+| |.. .+.+..-+.-.++++.. ..||- --.+=|++
T Consensus 192 s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf 271 (1010)
T KOG1991|consen 192 SYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLF 271 (1010)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHH
Confidence 6554321 112222222 211 11111111111222221 23444 44566778
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhc--CCChHHHHH
Q psy8267 189 TRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQ--SRNAAVVMA 266 (645)
Q Consensus 189 ~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~--s~n~aVv~e 266 (645)
+||+ +|..... .+..-+ .+|.. +..+. -++-+++.+...-+ --++-|++-
T Consensus 272 ~Ryg-----~~~~~~~----~y~~Fa-----~~f~~----------n~~~~----ile~~lk~l~~~~~~~yls~rvl~~ 323 (1010)
T KOG1991|consen 272 ERYG-----SPSLVVP----EYKEFA-----QMFLK----------NFAQG----ILEVFLKILEQWRQQLYLSDRVLYY 323 (1010)
T ss_pred HHhC-----Cccccch----hhHHHH-----HHHHH----------HHHHH----HHHHHHHHHHHHHhcccCCHHHHHH
Confidence 8887 3432110 000000 00000 00000 01112221111111 023455555
Q ss_pred HHHHHHhcCChH--------HHHH----HHHHHHHH-------hCCCh---------------hHHHHHHHHHHHHHhhc
Q psy8267 267 VAQLFHHLAPRR--------EVAI----IAKALVRL-------LRSSR---------------EVQTVVLTTIASLAVKR 312 (645)
Q Consensus 267 a~~~i~~l~~~~--------~~~~----~~~~L~~l-------L~s~~---------------niryv~L~~l~~l~~~~ 312 (645)
+.+.+-.+-... ++.. ++=|+..+ ...+| --+-.+++.+..++.++
T Consensus 324 ~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR 403 (1010)
T KOG1991|consen 324 LLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKR 403 (1010)
T ss_pred HHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhc
Confidence 554443322111 1111 11122111 01111 01235677788888888
Q ss_pred -ccchhh---hhceEEE------cCCCChHHHHHHHHHHHHccCc----CCHHHHHHHHH-Hh----hccccHHHHHHHH
Q psy8267 313 -RALFVP---YLKSFYV------RSSDPTHVKTLKLELLTTLASE----TSIASILREFQ-TY----ISSVDKAFVAATV 373 (645)
Q Consensus 313 -p~~~~~---~~~~f~~------l~~d~~~Ir~~kLdlL~~L~~~----~Nv~~Il~EL~-~y----l~~~d~~~~~~~i 373 (645)
++.|.+ +..+++- ..+++.--|--+|.++.++++- +-.+..++-++ .| .++.--.+|+.+.
T Consensus 404 ~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac 483 (1010)
T KOG1991|consen 404 GKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARAC 483 (1010)
T ss_pred chhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHH
Confidence 666654 3333333 2345566666788888887741 22223333222 22 2344456788888
Q ss_pred HHHHHHH-hhcc--ccHHHHHHHHHHhhccCC-hhhHHHHHHHHHHHhhcCCcchHHHHHH-------HHHhhccCChHH
Q psy8267 374 QAIGKCA-ANIA--QVTDTCLTGLVSLLSYSD-EAVVAESVVVIKNLLQTQPEAYTDIIRH-------MVRLSDSITVPT 442 (645)
Q Consensus 374 ~~I~~la-~k~~--~~~~~~v~~ll~LL~~~~-~~v~~e~v~~i~~il~~~p~~~~~~i~~-------L~~~l~~i~~~~ 442 (645)
--++..+ +.|+ ......++...+.|.+.. =-|.-|++..++-++.+++..++++-.+ +..+........
T Consensus 484 ~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~ 563 (1010)
T KOG1991|consen 484 WVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD 563 (1010)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH
Confidence 8888888 5554 455666666666666433 2477788889999999887665533333 333333322222
Q ss_pred HHHHHHHHHhcccccCCCchHHHHHHHHHhh
Q psy8267 443 ARAAILWLLGEYSHLVPALGPDVLRKAAITF 473 (645)
Q Consensus 443 ak~~~iwilGEy~~~i~~~~~diLr~l~~~f 473 (645)
.--.+==++++|++.+..+++++-..++..|
T Consensus 564 Lt~vme~iV~~fseElsPfA~eL~q~La~~F 594 (1010)
T KOG1991|consen 564 LTNVMEKIVCKFSEELSPFAVELCQNLAETF 594 (1010)
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 2233446789999988888888766666555
No 127
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=84.77 E-value=16 Score=34.92 Aligned_cols=122 Identities=14% Similarity=0.205 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhc-ccchhhhhceEE------EcCCCChHHHHHHHHHHHHccCcC
Q psy8267 277 RREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKR-RALFVPYLKSFY------VRSSDPTHVKTLKLELLTTLASET 348 (645)
Q Consensus 277 ~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~-p~~~~~~~~~f~------~l~~d~~~Ir~~kLdlL~~L~~~~ 348 (645)
...+......+..+|+ +++.-|+.|+.-+...+... ++.|..|...++ +..+||..++..++..|..|.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~--- 96 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF--- 96 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---
Confidence 3456777778888886 67899999999999988876 788865554432 234677777777777666533
Q ss_pred CHHHHHHHHHHhhccccHHHHHH-HHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchH
Q psy8267 349 SIASILREFQTYISSVDKAFVAA-TVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYT 425 (645)
Q Consensus 349 Nv~~Il~EL~~yl~~~d~~~~~~-~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~ 425 (645)
.+++.-. ++.+| +.-.+ ...+..++++++. .....++...+..++..+|....
T Consensus 97 ----------~~~~~~p-~l~Rei~tp~l-----------~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r 150 (165)
T PF08167_consen 97 ----------DLIRGKP-TLTREIATPNL-----------PKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR 150 (165)
T ss_pred ----------HHhcCCC-chHHHHhhccH-----------HHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc
Confidence 3333322 33333 22222 2334455666654 56788888999999999997543
No 128
>KOG2759|consensus
Probab=84.57 E-value=68 Score=35.19 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=58.6
Q ss_pred CChhhHHHHHHH-HHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHHHH------HHHhh
Q psy8267 401 SDEAVVAESVVV-IKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRK------AAITF 473 (645)
Q Consensus 401 ~~~~v~~e~v~~-i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr~------l~~~f 473 (645)
+..|....-|.- +..+ .+-.-++++.|.++++.-.+|...+.++.=||||....|. .-.++.+ +.+-.
T Consensus 344 SP~Hk~e~FW~eNa~rl----nennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-gk~vv~k~ggKe~vM~Ll 418 (442)
T KOG2759|consen 344 SPVHKSEKFWRENADRL----NENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-GKAVVEKYGGKERVMNLL 418 (442)
T ss_pred CccccccchHHHhHHHH----hhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-HhHHHHHhchHHHHHHHh
Confidence 334555666632 1111 2233468899999999988999999999999999999887 5555443 33445
Q ss_pred cCCchHHHHHHHHhh
Q psy8267 474 VNEEDIVKLQVLNLA 488 (645)
Q Consensus 474 ~~e~~~vk~~iL~~~ 488 (645)
..++|+||...|.+.
T Consensus 419 nh~d~~Vry~ALlav 433 (442)
T KOG2759|consen 419 NHEDPEVRYHALLAV 433 (442)
T ss_pred cCCCchHHHHHHHHH
Confidence 668999999888765
No 129
>KOG2160|consensus
Probab=83.70 E-value=17 Score=38.77 Aligned_cols=93 Identities=23% Similarity=0.218 Sum_probs=64.6
Q ss_pred HcCCCCHHHHHHHHHHHhCCC--ccccHHHHH-----HHHHhhc-CCCChHHHHHHHHHHHHHhhcCchhHHHH-----H
Q psy8267 63 ALKDPNQLIRASALRVLSSIR--VPMIIPIVM-----LAIKDSS-LDMSPYVRKTAAHAIPKLYSLDPEQKEEL-----V 129 (645)
Q Consensus 63 DL~~~N~~iralALr~ls~I~--~~ei~~~l~-----~~I~~~l-~d~~pyVRK~Aalal~kl~~~~p~~~~~~-----~ 129 (645)
-++++++.+|.+|.+++|+.. .|..-+.++ ..+.+.+ .|.+-.||++|..|+..+.|.+|.....| .
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 578999999999999999862 333333333 2333334 55678899999999999999988765433 4
Q ss_pred HHHHHhhcCCChhHHH--HHHHHHHHHC
Q psy8267 130 LVIEKLLQDKTTLVVG--SAVMAFEEVC 155 (645)
Q Consensus 130 ~~l~~lL~D~~~~V~~--sav~~l~ei~ 155 (645)
..|.+.|.+++..|.. -|+.++..+.
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 5688899886554444 4444554444
No 130
>KOG1248|consensus
Probab=81.56 E-value=1.5e+02 Score=36.81 Aligned_cols=276 Identities=12% Similarity=0.143 Sum_probs=148.8
Q ss_pred ChHHHHHHHHHHHHHh-hcCc-hhHHHHHHHHHHhhcCCChhHHHH-HHHHHHHHChhhh----hhhHHHHHHHHHHhcC
Q psy8267 103 SPYVRKTAAHAIPKLY-SLDP-EQKEELVLVIEKLLQDKTTLVVGS-AVMAFEEVCPERI----DMIHKSYRKLCNLLVD 175 (645)
Q Consensus 103 ~pyVRK~Aalal~kl~-~~~p-~~~~~~~~~l~~lL~D~~~~V~~s-av~~l~ei~~~~~----~li~~~~~kL~~~L~~ 175 (645)
.+-.|++-...+.+.| ...| |....+.+.+..+..|.|..|..- ..+.|..+++-.. +.+.+.+ .+......
T Consensus 586 ~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~ 664 (1176)
T KOG1248|consen 586 ILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFEN 664 (1176)
T ss_pred cHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhc
Confidence 3456666666666333 4444 344677777888888877555542 3333333332111 1122222 22222222
Q ss_pred C-CchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhh
Q psy8267 176 V-DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKP 254 (645)
Q Consensus 176 ~-~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ 254 (645)
. ++=.|-+.-++|....+. |... .| .+.-...+.+.+.+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~----~s~~-----------------~~-------------------~~q~i~~I~n~L~d 704 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS----PSGE-----------------GL-------------------VEQRIDDIFNSLLD 704 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC----Cchh-----------------hH-------------------HHHHHHHHHHHHHH
Confidence 3 556688888888887743 3210 00 01111233344444
Q ss_pred hhcCCChHHHH---HHHHHHHhcCChHHH---H-HHHHHHHHHhC-CChhHHHHHHHHHHHHHh--hc------c--cch
Q psy8267 255 LLQSRNAAVVM---AVAQLFHHLAPRREV---A-IIAKALVRLLR-SSREVQTVVLTTIASLAV--KR------R--ALF 316 (645)
Q Consensus 255 ll~s~n~aVv~---ea~~~i~~l~~~~~~---~-~~~~~L~~lL~-s~~niryv~L~~l~~l~~--~~------p--~~~ 316 (645)
-+++....... .|.+.++.+-+.... . .+...++.+ . .+--.|-.+.++|..|.. .. | ..+
T Consensus 705 s~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~l 783 (1176)
T KOG1248|consen 705 SFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAIL 783 (1176)
T ss_pred HHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHH
Confidence 45555555544 455556655553221 1 222333322 2 223456666666666652 11 1 244
Q ss_pred hhhhceEE-EcCCCChHHHHHH---HHHH----HHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccH-
Q psy8267 317 VPYLKSFY-VRSSDPTHVKTLK---LELL----TTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVT- 387 (645)
Q Consensus 317 ~~~~~~f~-~l~~d~~~Ir~~k---LdlL----~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~- 387 (645)
++++..++ -+-.|.+..+... +..+ ....+...+..++++..-|+.+..+++++.+|..|..+..++|...
T Consensus 784 nefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l 863 (1176)
T KOG1248|consen 784 NEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL 863 (1176)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55555554 2344444333332 2211 1345566678888888999999999999999999999999998653
Q ss_pred ----HHHHHHHHHhhccCChhhHHHHHHHHHHHhhcC
Q psy8267 388 ----DTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQ 420 (645)
Q Consensus 388 ----~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~ 420 (645)
+..+..++.++.....++.-.+-..+..+++++
T Consensus 864 ~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 864 SPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 334455555555555566666666666677664
No 131
>KOG0567|consensus
Probab=81.40 E-value=2.4 Score=43.34 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=48.5
Q ss_pred HHHHHHHHcCC--CCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q psy8267 56 SISTFQRALKD--PNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIP 115 (645)
Q Consensus 56 ~iNsl~kDL~~--~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~ 115 (645)
+|-+++|-|.+ .+|++|+.|..+||.|+.++-++. +++.+.|+.+.||+.+..++-
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~~v----L~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADEDCVEV----LKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHHHH----HHHHcCCcHHHHHHHHHHHHH
Confidence 47888888876 578999999999999999886665 488999999999999998864
No 132
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.31 E-value=34 Score=36.15 Aligned_cols=173 Identities=17% Similarity=0.198 Sum_probs=87.9
Q ss_pred CCChhHHHHHHHHHHHHChh---hhhhhHH--------HHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCC
Q psy8267 138 DKTTLVVGSAVMAFEEVCPE---RIDMIHK--------SYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDS 206 (645)
Q Consensus 138 D~~~~V~~sav~~l~ei~~~---~~~li~~--------~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s 206 (645)
.+++.++..++..+.+++.+ +.++++. .|..+++.+...|++.+.+...+|+..... .|....
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~---~~~~~~--- 141 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ---GPKRSE--- 141 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS---TTT--H---
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc---CCcccc---
Confidence 34555566666666666533 2233322 466778888888999999999999998742 111000
Q ss_pred CCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHH------
Q psy8267 207 SEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREV------ 280 (645)
Q Consensus 207 ~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~------ 280 (645)
...+..+..+++.+...+++.+..+..-|++++..+-.....
T Consensus 142 --------------------------------~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~ 189 (312)
T PF03224_consen 142 --------------------------------KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK 189 (312)
T ss_dssp --------------------------------HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT
T ss_pred --------------------------------chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh
Confidence 000123344555444444444444556666666554322222
Q ss_pred HHHHHHHHHHh------CC--ChhHHHHHHHHHHHHHhhcccchhhhhc--eE-----EEcCCCChHHHHHHHHHHHHcc
Q psy8267 281 AIIAKALVRLL------RS--SREVQTVVLTTIASLAVKRRALFVPYLK--SF-----YVRSSDPTHVKTLKLELLTTLA 345 (645)
Q Consensus 281 ~~~~~~L~~lL------~s--~~niryv~L~~l~~l~~~~p~~~~~~~~--~f-----~~l~~d~~~Ir~~kLdlL~~L~ 345 (645)
...++.+..+| ++ ...++|-++-++-.|+- +++..+...+ .+ .++...-.-|-|..+-+|.+++
T Consensus 190 ~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 190 SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 23456777777 22 24788999988877764 3322211100 11 0123333567777888888888
Q ss_pred CcCC
Q psy8267 346 SETS 349 (645)
Q Consensus 346 ~~~N 349 (645)
+...
T Consensus 269 ~~~~ 272 (312)
T PF03224_consen 269 SKAP 272 (312)
T ss_dssp SSSS
T ss_pred hccH
Confidence 7655
No 133
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.13 E-value=10 Score=41.30 Aligned_cols=132 Identities=19% Similarity=0.202 Sum_probs=76.4
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhcccCch--------HHHHHHHHHHHHcCCCCHHHHHHHHHHHh---CC--Ccccc
Q psy8267 21 PAVVKNVVSKNIEVKKLVYVYLARYAEEQQD--------LALLSISTFQRALKDPNQLIRASALRVLS---SI--RVPMI 87 (645)
Q Consensus 21 ~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~d--------l~lL~iNsl~kDL~~~N~~iralALr~ls---~I--~~~ei 87 (645)
..+...+-+++-+++-.||=.+..+...... +-.+++=++.||.+ ++.-|.-||+.+- .+ +..++
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCcccC
Confidence 3333334455577777777666444432222 23345556666643 4666666666553 34 55666
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH--HHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy8267 88 IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE--ELVLVIEKLLQDKTTLVVGSAVMAFEEV 154 (645)
Q Consensus 88 ~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~--~~~~~l~~lL~D~~~~V~~sav~~l~ei 154 (645)
-..++.+|..+..+++.-.|..|..+++.+.-.+|+++- +-+..+.+.+-|.......+.+.++..+
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~l 174 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYL 174 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHH
Confidence 677777777777777777787877778777777887651 2344445555554444333444444433
No 134
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=80.93 E-value=43 Score=31.32 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=69.1
Q ss_pred HHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcccchhhhhceEEEc
Q psy8267 248 LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVR 326 (645)
Q Consensus 248 ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l 326 (645)
+-+++.+.+...+-+..++.+-.+-.= ...-+.++.+|.+-| +++|++++.+|..+..++......|..++.
T Consensus 5 iekATse~l~~~dw~~il~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva----- 77 (144)
T cd03568 5 VEKATDEKLTSENWGLILDVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVA----- 77 (144)
T ss_pred HHHHcCccCCCcCHHHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHh-----
Confidence 344556666667778888887777532 123456777777766 478999999999999998877766654432
Q ss_pred CCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhcccc
Q psy8267 327 SSDPTHVKTLKLELLTTLASETSIASILREFQTYISS-VDKAFVAATVQAIGKCAANIAQV 386 (645)
Q Consensus 327 ~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~-~d~~~~~~~i~~I~~la~k~~~~ 386 (645)
.+ ..++||...+.. .+..++.++..-|..-+..|+..
T Consensus 78 -------sk----------------~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 78 -------SR----------------DFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred -------hH----------------HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 11 233333333333 45666666666666666666543
No 135
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.08 E-value=6.6 Score=44.15 Aligned_cols=129 Identities=18% Similarity=0.146 Sum_probs=79.9
Q ss_pred chHHHHHHh-ccCCchhHHHHHHHHH-Hhcc-cCchHHHHHHHHHH-HHcCCCCHHHHHHHHHHHhCCCccccHHHHHHH
Q psy8267 19 LFPAVVKNV-VSKNIEVKKLVYVYLA-RYAE-EQQDLALLSISTFQ-RALKDPNQLIRASALRVLSSIRVPMIIPIVMLA 94 (645)
Q Consensus 19 lf~~vvkli-~s~~~~~KkL~Yl~l~-~~~~-~~~dl~lL~iNsl~-kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~ 94 (645)
.+-+.++-+ .+.+..++-=|-+.+. -|.. .+.. ++.++. -...|.|..+|-.|..++|-++-.+ +.+...
T Consensus 516 ~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~----vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--~~~lv~ 589 (926)
T COG5116 516 MADDYINELLYDKDSILRYNGVFSLALAYVGTGNLG----VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--RDLLVG 589 (926)
T ss_pred HHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcch----hHhhhheeecccCchHHHHHHHHheeeeEecC--cchhhH
Confidence 344455444 4556555555544332 2222 2221 122222 2257899999999999999876555 233334
Q ss_pred HHhhcCC-CChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 95 IKDSSLD-MSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 95 I~~~l~d-~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
..+.+++ .+++||--.|.|+.-.+.-.-+. ...+.+..|+.|.+..|.-+|..+..-|.
T Consensus 590 tvelLs~shN~hVR~g~AvaLGiacag~G~~--~a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 590 TVELLSESHNFHVRAGVAVALGIACAGTGDK--VATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred HHHHhhhccchhhhhhhHHHhhhhhcCCccH--HHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 4455554 59999999998887665433332 35678889999999999988877765443
No 136
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=79.70 E-value=3.5 Score=40.14 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=55.6
Q ss_pred HHcCCCCHHHHHHHHHHHhCCCc-cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q psy8267 62 RALKDPNQLIRASALRVLSSIRV-PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVI 132 (645)
Q Consensus 62 kDL~~~N~~iralALr~ls~I~~-~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l 132 (645)
+=..|+|+..|-.|+-++..... ..-.+.+...+..++.|.+.||||..+-++..+++.+|+.+-++++..
T Consensus 112 ~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 112 EWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 33468888888777777766433 355677888888899999999999999999999999999876655443
No 137
>KOG1943|consensus
Probab=79.49 E-value=1.6e+02 Score=36.09 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=56.1
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHC
Q psy8267 85 PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP-EQKEELVLVIEKLLQDK-TTLVVGSAVMAFEEVC 155 (645)
Q Consensus 85 ~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p-~~~~~~~~~l~~lL~D~-~~~V~~sav~~l~ei~ 155 (645)
++++|.++..+..+++|.+..||-.||-++.|+-...| ++.++.++.+.++++-- ++..-..|..++-|+.
T Consensus 336 ~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA 408 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELA 408 (1133)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHH
Confidence 58888999999999999999999999999999998766 45566666666666542 3555557777777776
No 138
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=79.06 E-value=16 Score=33.89 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=56.4
Q ss_pred hccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC---Ccccc-----HHHHHHHHHhh
Q psy8267 27 VVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI---RVPMI-----IPIVMLAIKDS 98 (645)
Q Consensus 27 i~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I---~~~ei-----~~~l~~~I~~~ 98 (645)
.+....+.---.-+-++-..+.+++-+--++.+|+|-|+++||.+.-+||..+-.+ +++.+ ....+..+.++
T Consensus 14 Ts~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l 93 (140)
T PF00790_consen 14 TSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKL 93 (140)
T ss_dssp T-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHH
T ss_pred hCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHH
Confidence 33444444444445566666666777888999999999999999999999888543 11111 12244455665
Q ss_pred cCCC--ChH--HHHHHHHHHHHH
Q psy8267 99 SLDM--SPY--VRKTAAHAIPKL 117 (645)
Q Consensus 99 l~d~--~py--VRK~Aalal~kl 117 (645)
+.++ .+. ||+++...+...
T Consensus 94 ~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 94 IKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HccCCCCchhHHHHHHHHHHHHH
Confidence 5443 233 898887665443
No 139
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=78.48 E-value=1.1e+02 Score=33.78 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=86.9
Q ss_pred HhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCc-------------------cccHHHHHHHHHhhcCCCCh
Q psy8267 44 RYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRV-------------------PMIIPIVMLAIKDSSLDMSP 104 (645)
Q Consensus 44 ~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~-------------------~ei~~~l~~~I~~~l~d~~p 104 (645)
...+.++. +.-.++.+..-+.| +.+...|-+.++-+-. .-+...+.+.+.+.....+.
T Consensus 261 Lv~R~~~~-~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 261 LVMRGHPL-ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred HHHcCCch-HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 33444444 55555666666666 4445555555543322 23344556666666666665
Q ss_pred HHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHh
Q psy8267 105 YVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLL 173 (645)
Q Consensus 105 yVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L 173 (645)
.+|-.-..|+..+.+.-|..+ +++.+.+.+.|+-+|+.|..+++..+..+..+..+.+.+|...|+..|
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL 411 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 577777888999998888643 678888888888888889999999999888888888877777777655
No 140
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=78.13 E-value=2.8 Score=30.49 Aligned_cols=25 Identities=36% Similarity=0.259 Sum_probs=20.1
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHH
Q psy8267 89 PIVMLAIKDSSLDMSPYVRKTAAHA 113 (645)
Q Consensus 89 ~~l~~~I~~~l~d~~pyVRK~Aala 113 (645)
+.+...|.+.+.|++|-||+.|+-.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3677788888999999999988653
No 141
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=78.07 E-value=82 Score=31.87 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=73.3
Q ss_pred hcCCChHHHHHHHHHHHhcCChH-H-HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhhhceEEEc------
Q psy8267 256 LQSRNAAVVMAVAQLFHHLAPRR-E-VAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPYLKSFYVR------ 326 (645)
Q Consensus 256 l~s~n~aVv~ea~~~i~~l~~~~-~-~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l------ 326 (645)
-+..++.+.....+++-.+.... . ...+.+.|..+.. .....+|++++.+..+-..++..| ++++.+...
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~ 88 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIP 88 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcc
Confidence 45566777777777776665433 2 3456677777775 445778999999999988888665 333322111
Q ss_pred ---CCCCh------HHHHHHHHHHHHccCcCCHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHh
Q psy8267 327 ---SSDPT------HVKTLKLELLTTLASETSIASILREFQTYI-SSVDKAFVAATVQAIGKCAA 381 (645)
Q Consensus 327 ---~~d~~------~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl-~~~d~~~~~~~i~~I~~la~ 381 (645)
.+++. +++.---++.. .+++....++..+...+ .+.++..+.-++++|..+.+
T Consensus 89 ~~~~~~~~~~~~~i~~a~s~~~ic~--~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 89 SSFSSKDEFWECLISIAASIRDICC--SRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 11111 11111111111 23457777778888887 66777777777777777663
No 142
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.01 E-value=11 Score=34.01 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=56.0
Q ss_pred hccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHHHH------HHH
Q psy8267 398 LSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRK------AAI 471 (645)
Q Consensus 398 L~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr~------l~~ 471 (645)
|+=+..|-++.-|.- =..+..+-.-++++.|+++|+...++.+.+.++.=||||+...|+ .-.+++. +.+
T Consensus 18 L~WSP~H~se~FW~E---Na~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~ 93 (119)
T PF11698_consen 18 LEWSPVHKSEKFWRE---NADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVME 93 (119)
T ss_dssp ----GGGG-HHHHHH---HSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHH
T ss_pred ccccCCCCCccHHHH---HHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHH
Confidence 333344556666621 222334444568999999998777899999999999999999887 4444432 334
Q ss_pred hhcCCchHHHHHHHHhhh
Q psy8267 472 TFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 472 ~f~~e~~~vk~~iL~~~~ 489 (645)
-...++++||.+.|.+.-
T Consensus 94 Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 94 LMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp HTS-SSHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHH
Confidence 445688999999988763
No 143
>KOG4413|consensus
Probab=77.79 E-value=1e+02 Score=32.83 Aligned_cols=165 Identities=16% Similarity=0.315 Sum_probs=88.9
Q ss_pred hccCCchhHHHHHHHHHHhcccCc--hH--HHHHHH-HHHHHc----CCCCHHHHHHHHHHHhCCC-ccccHHHHHH---
Q psy8267 27 VVSKNIEVKKLVYVYLARYAEEQQ--DL--ALLSIS-TFQRAL----KDPNQLIRASALRVLSSIR-VPMIIPIVML--- 93 (645)
Q Consensus 27 i~s~~~~~KkL~Yl~l~~~~~~~~--dl--~lL~iN-sl~kDL----~~~N~~iralALr~ls~I~-~~ei~~~l~~--- 93 (645)
+..++-++|-+..=-+..+.+... ++ .++++| -+.|-+ ...|..+--.|+.++.+|. .+.-.+.+.+
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSel 170 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESEL 170 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccccc
Confidence 334555555554444434443221 11 233333 344433 3456666666777766653 2221122211
Q ss_pred ----HHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcC-CChhHHHHHHHHHHHHChh--hhhh
Q psy8267 94 ----AIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQD-KTTLVVGSAVMAFEEVCPE--RIDM 161 (645)
Q Consensus 94 ----~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D-~~~~V~~sav~~l~ei~~~--~~~l 161 (645)
..+++..-.+..+|-+..--+.+++...|+.. ..+.+.+..=|.- +|..|..+++-++.++.-. .-++
T Consensus 171 lDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgref 250 (524)
T KOG4413|consen 171 LDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREF 250 (524)
T ss_pred CChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhh
Confidence 11112222355666666667777888888754 3556666655554 8899999998888877631 1123
Q ss_pred h--HHHHHHHHHHhc--CCCchhHHHHHHHHHHH
Q psy8267 162 I--HKSYRKLCNLLV--DVDEWGQVFILNMLTRY 191 (645)
Q Consensus 162 i--~~~~~kL~~~L~--~~~~W~Qv~iL~lL~~y 191 (645)
+ .+.+..+|+++. +.+||..-..|-.+.++
T Consensus 251 laQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 251 LAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred cchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 2 234667888885 56888877555444444
No 144
>KOG2213|consensus
Probab=77.19 E-value=1.2e+02 Score=33.18 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 106 VRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 106 VRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
-++-|+--|+|.|+..|++.++.++.-.++.+|.|.+|...|+.-+=..|.+
T Consensus 40 ~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 4566777788888888888777777777888888888888887766666654
No 145
>KOG1820|consensus
Probab=76.87 E-value=84 Score=37.83 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=125.2
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCc-hhH----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 85 PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP-EQK----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 85 ~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p-~~~----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
.++..-+...+...+.|+++-=|+.|+..+.....-.+ +.. ..+...+...+.|.|..|+..|+..+..|+-..-
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 45666777888889999999999999999999987555 222 2334444556789999999999888888874211
Q ss_pred ----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccc
Q psy8267 160 ----DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETS 235 (645)
Q Consensus 160 ----~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~ 235 (645)
.+....+..+++.+.+--+-.--.++..+-.++.. .|
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns---~~------------------------------------ 368 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS---TP------------------------------------ 368 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc---cc------------------------------------
Confidence 12222234455556555555555555555555521 01
Q ss_pred ccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHH----hcCC----hHHHHHHHHHHHHHhC-CChhHHHHHHHHHH
Q psy8267 236 QVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFH----HLAP----RREVAIIAKALVRLLR-SSREVQTVVLTTIA 306 (645)
Q Consensus 236 ~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~----~l~~----~~~~~~~~~~L~~lL~-s~~niryv~L~~l~ 306 (645)
+..+.+.+...+.+.|+.+.-+|..++. .+++ ...+..++..++...+ ++.+||-.+++++.
T Consensus 369 ---------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~ 439 (815)
T KOG1820|consen 369 ---------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVA 439 (815)
T ss_pred ---------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHH
Confidence 1123344455678899998888766543 2332 2345667777777774 77899999999999
Q ss_pred HHHhhcc-cchhhhhceE
Q psy8267 307 SLAVKRR-ALFVPYLKSF 323 (645)
Q Consensus 307 ~l~~~~p-~~~~~~~~~f 323 (645)
.+...+. ..+..++...
T Consensus 440 ~v~k~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 440 AVMKVHGEEVFKKLLKDL 457 (815)
T ss_pred HHHHHhhHHHHHHHHHhh
Confidence 9887665 3556555543
No 146
>KOG1248|consensus
Probab=76.41 E-value=2e+02 Score=35.59 Aligned_cols=166 Identities=19% Similarity=0.229 Sum_probs=107.0
Q ss_pred cCCChHHHHHHHHHHHhcCCh--------HHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcc----cchhhhhceE
Q psy8267 257 QSRNAAVVMAVAQLFHHLAPR--------REVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRR----ALFVPYLKSF 323 (645)
Q Consensus 257 ~s~n~aVv~ea~~~i~~l~~~--------~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p----~~~~~~~~~f 323 (645)
++.++.|.--+-+++-.+.+. +.+..+-+.|..=++ +..-.|+-.|.++..|....+ +.+..-+...
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV 743 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344666665555555443321 123344455555443 455688888888888888777 2333333333
Q ss_pred E-EcCCCChHHHHHHHHHHHHcc---------CcCCHHHHHHHHHHhhcc---ccHHH-HHHHHHHHHHHHhhccc----
Q psy8267 324 Y-VRSSDPTHVKTLKLELLTTLA---------SETSIASILREFQTYISS---VDKAF-VAATVQAIGKCAANIAQ---- 385 (645)
Q Consensus 324 ~-~l~~d~~~Ir~~kLdlL~~L~---------~~~Nv~~Il~EL~~yl~~---~d~~~-~~~~i~~I~~la~k~~~---- 385 (645)
. +..+-+.+-|+-+.++|+.|+ ++. ++.+++|++.-+.. .|... +...|-+++.+...+..
T Consensus 744 IL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~ 822 (1176)
T KOG1248|consen 744 ILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD 822 (1176)
T ss_pred HHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 3 445566789999999999999 222 45677776654432 23333 33338888888776642
Q ss_pred -cHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcc
Q psy8267 386 -VTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEA 423 (645)
Q Consensus 386 -~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~ 423 (645)
....+++.+...|..+..++...+|-.++-++...|+.
T Consensus 823 ~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 823 ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 34566777777788888889999999999999999874
No 147
>KOG0413|consensus
Probab=76.28 E-value=11 Score=44.99 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=75.5
Q ss_pred cCchHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhCCCccc--cHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh
Q psy8267 48 EQQDLALLSISTFQRALK-DPNQLIRASALRVLSSIRVPM--IIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ 124 (645)
Q Consensus 48 ~~~dl~lL~iNsl~kDL~-~~N~~iralALr~ls~I~~~e--i~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~ 124 (645)
.+.+++--.+..|.|.|. +....+|..-+-+||.++..- |++--++-|-.+|.|++++|||-+.+-+.++.+.+---
T Consensus 961 ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vK 1040 (1529)
T KOG0413|consen 961 AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVK 1040 (1529)
T ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhh
Confidence 345666656677788875 445567777777888887765 88999999999999999999999999999998643211
Q ss_pred H--HHHHHHHHHhhcCCChhHHHHHHHHHHHHCh
Q psy8267 125 K--EELVLVIEKLLQDKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 125 ~--~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~ 156 (645)
- +-|+..+. -|-|.++-+..-|=-.|.++..
T Consensus 1041 w~G~Lf~Rf~l-~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1041 WNGELFIRFML-ALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred cchhhHHHHHH-HHcccCHHHHHHHHHHHHHHHh
Confidence 1 12333333 3446777777666666666654
No 148
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=76.17 E-value=28 Score=33.22 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=72.4
Q ss_pred ccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcC-chhH----HHHHHHHHHhhcCCCh-hHHHHHHHHHHHHCh-
Q psy8267 84 VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD-PEQK----EELVLVIEKLLQDKTT-LVVGSAVMAFEEVCP- 156 (645)
Q Consensus 84 ~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~-p~~~----~~~~~~l~~lL~D~~~-~V~~sav~~l~ei~~- 156 (645)
.......+..-+-+++.+++++-|-.++.-+.-..+.+ +|.. ..|+..+.+.|+..++ .+..+|+.++..++.
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34455667777889999999999998888777777776 6754 5799999999987654 445577777776652
Q ss_pred --hhh----hh----hHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q psy8267 157 --ERI----DM----IHKSYRKLCNLLVDVDEWGQVFILNMLTRYART 194 (645)
Q Consensus 157 --~~~----~l----i~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~ 194 (645)
+.+ +. +.+.+..+++.+.+ +-.....++.|....+.
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 111 22 22333444454444 34455677777776644
No 149
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=76.02 E-value=12 Score=36.41 Aligned_cols=44 Identities=27% Similarity=0.454 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcccC---c---hHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC
Q psy8267 34 VKKLVYVYLARYAEEQ---Q---DLALLSISTFQRALKDPNQLIRASALRVLSSI 82 (645)
Q Consensus 34 ~KkL~Yl~l~~~~~~~---~---dl~lL~iNsl~kDL~~~N~~iralALr~ls~I 82 (645)
.||..|=||..+..+. + .-.++. .+ +.||++-+|+.|+.+++.+
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sLlt--~i---l~Dp~~kvR~aA~~~l~~l 67 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSLLT--CI---LKDPSPKVRAAAASALAAL 67 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcchhH--HH---HcCCchhHHHHHHHHHHHH
Confidence 4778899999888765 1 112221 11 5799999999999999876
No 150
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=75.73 E-value=87 Score=31.70 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCc--cccHHHHHHHHHh-------hcC--CCChHHHHHHHHHHHHHhh
Q psy8267 51 DLALLSISTFQRALKDPNQLIRASALRVLSSIRV--PMIIPIVMLAIKD-------SSL--DMSPYVRKTAAHAIPKLYS 119 (645)
Q Consensus 51 dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~--~ei~~~l~~~I~~-------~l~--d~~pyVRK~Aalal~kl~~ 119 (645)
+..-+++.++..=...+....++.++|-++.+-. +...+.+-..+.. ... +....+.-..+.++.-+..
T Consensus 34 ~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~ 113 (234)
T PF12530_consen 34 VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICC 113 (234)
T ss_pred cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHH
Confidence 5566777777776677777778888888887621 1111222222222 122 2234444454667777888
Q ss_pred cCchhHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHChhhh
Q psy8267 120 LDPEQKEELVLVIEKLL-QDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 120 ~~p~~~~~~~~~l~~lL-~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
..|+.-.+++..|..+| ++.++.+.+.++-++..+|+...
T Consensus 114 ~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 114 SRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred hChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 89997788899999999 78888888889999999997544
No 151
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.
Probab=75.66 E-value=2.9 Score=39.38 Aligned_cols=67 Identities=13% Similarity=0.026 Sum_probs=42.0
Q ss_pred EeecccccccCCCceEEEEEEeeCC-CCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEEe
Q psy8267 525 ASFSRAPCLASPRMISVTLRLTNHH-GAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNL 594 (645)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~l~~~N~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 594 (645)
|....-.++|..|+ .+++.++|+- +.-++|+++.+. ...+++......++++|+++++-..-+.+.+
T Consensus 37 Y~V~~vKHiF~~hi-VlQF~v~NTL~dq~LenV~V~~~--~~~~~~~~~~~ipi~~L~~~~~~~~yV~l~~ 104 (151)
T PF08752_consen 37 YVVSCVKHIFAEHI-VLQFNVTNTLNDQVLENVSVVLE--PSEEEFEEVFIIPIPSLPYNEPGSCYVVLKR 104 (151)
T ss_dssp EEEEEEEEE-SSEE-EEEEEEEE--TTEEEEEEEEEEE--ESSS--EEEEEE-EEEE-CT--EEEEEEEE-
T ss_pred EEEEEEEEEecccE-EEEEEEeeccCceeeeeEEEEEe--cCCceEEEEEEEEhhhCCCCCCeeEEEEEEe
Confidence 65555556775555 7999999995 789999999888 3333466665556669999998877776666
No 152
>KOG2160|consensus
Probab=75.58 E-value=28 Score=37.27 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=71.3
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhcCchhHHH-----HHHHHHHhhc-CCChhHHHHHHHHHHHHChhhh---h-h--h
Q psy8267 95 IKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE-----LVLVIEKLLQ-DKTTLVVGSAVMAFEEVCPERI---D-M--I 162 (645)
Q Consensus 95 I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~-----~~~~l~~lL~-D~~~~V~~sav~~l~ei~~~~~---~-l--i 162 (645)
+...+.++++-||..||-.+..+.+-+|...+. +...|...|. |.+..|...|+.|+..+...+. + + +
T Consensus 129 ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~ 208 (342)
T KOG2160|consen 129 LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL 208 (342)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc
Confidence 344789999999999999999999999986432 4445556665 4455566788888876664332 1 1 2
Q ss_pred HHHHHHHHHHhcC--CCchhHHHHHHHHHHHHhh
Q psy8267 163 HKSYRKLCNLLVD--VDEWGQVFILNMLTRYART 194 (645)
Q Consensus 163 ~~~~~kL~~~L~~--~~~W~Qv~iL~lL~~y~r~ 194 (645)
++ |.-|.+.+.+ -+.-.|++.+-++..+...
T Consensus 209 ~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 209 NG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred CC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 22 5567777776 6788999999999998743
No 153
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=75.18 E-value=1.2e+02 Score=32.22 Aligned_cols=170 Identities=20% Similarity=0.250 Sum_probs=98.6
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHhccc--CchH----HHHHHHHHHHHcCCCCHHHHHHHHHHHhCC--------Ccc
Q psy8267 20 FPAVVKNVVSKNIEVKKLVYVYLARYAEE--QQDL----ALLSISTFQRALKDPNQLIRASALRVLSSI--------RVP 85 (645)
Q Consensus 20 f~~vvkli~s~~~~~KkL~Yl~l~~~~~~--~~dl----~lL~iNsl~kDL~~~N~~iralALr~ls~I--------~~~ 85 (645)
+-+++..+..++-+.|.-++-.+...+.. .+|. ..-.+..+.|-++-....-+.+|+|.++-+ ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 44666677666655555444444444322 2332 223456778888777767778888877643 246
Q ss_pred ccHHHHHHHHHhhcCCCC--hHHHHHHHHHHH--HHh-hcCchhHHHHHHHHHHh-----hc-CC---------ChhHHH
Q psy8267 86 MIIPIVMLAIKDSSLDMS--PYVRKTAAHAIP--KLY-SLDPEQKEELVLVIEKL-----LQ-DK---------TTLVVG 145 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~--pyVRK~Aalal~--kl~-~~~p~~~~~~~~~l~~l-----L~-D~---------~~~V~~ 145 (645)
++.+.+.+.+++.+.|.+ +-+|-.++.|+. -++ --+++.+...++.+..+ ++ |. ++.|+.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 788888899999999874 445555544443 333 24555555333444421 11 22 356788
Q ss_pred HHHHHHH---HHChhh-h-hhhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy8267 146 SAVMAFE---EVCPER-I-DMIHKSYRKLCNLLVDVDEWGQVFILNMLT 189 (645)
Q Consensus 146 sav~~l~---ei~~~~-~-~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~ 189 (645)
+|+.+.. ..+|.. . ..+..+..+|...|...+.=.|+..=+.+.
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiA 253 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIA 253 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 8877654 334441 2 445566778888888777666665444333
No 154
>KOG4413|consensus
Probab=74.85 E-value=1.2e+02 Score=32.27 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=55.9
Q ss_pred CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCc-hhH--------HHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy8267 83 RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP-EQK--------EELVLVIEKLLQDKTTLVVGSAVMAFEE 153 (645)
Q Consensus 83 ~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p-~~~--------~~~~~~l~~lL~D~~~~V~~sav~~l~e 153 (645)
-...+++.+++.+.+.+.+++..|+--|+-.+.++..-+- ..+ .++.+.|..++..+|..|.-+|+-.+..
T Consensus 75 egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikr 154 (524)
T KOG4413|consen 75 EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKR 154 (524)
T ss_pred cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4556889999999999999999999999999998886432 111 2456666677778888898888777765
Q ss_pred HC
Q psy8267 154 VC 155 (645)
Q Consensus 154 i~ 155 (645)
+.
T Consensus 155 ia 156 (524)
T KOG4413|consen 155 IA 156 (524)
T ss_pred HH
Confidence 54
No 155
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=74.60 E-value=35 Score=31.25 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=44.0
Q ss_pred HHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC---Cc----cccHH-HHHHHHHhhcCC---CChHHHHHH
Q psy8267 42 LARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI---RV----PMIIP-IVMLAIKDSSLD---MSPYVRKTA 110 (645)
Q Consensus 42 l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I---~~----~ei~~-~l~~~I~~~l~d---~~pyVRK~A 110 (645)
++-..+.+++-+-.++.+++|-|+++||.++-+||..+-.+ ++ .+++. ..+..+.+.+.. .++-||+++
T Consensus 24 icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 24 LCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 33333344455667777888888888888888887776432 11 11221 222234555543 366777777
Q ss_pred HHHHHHHhh
Q psy8267 111 AHAIPKLYS 119 (645)
Q Consensus 111 alal~kl~~ 119 (645)
...+.....
T Consensus 104 l~ll~~W~~ 112 (133)
T cd03561 104 LELILAWSE 112 (133)
T ss_pred HHHHHHHHH
Confidence 666555443
No 156
>KOG4653|consensus
Probab=74.42 E-value=1.3e+02 Score=36.03 Aligned_cols=140 Identities=19% Similarity=0.233 Sum_probs=84.8
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHH---HHHhcCChHHHHHHHHHHHH-HhC--C-C-hhHHHHHHHHHHHHHhhcccchh
Q psy8267 246 RLLLKNAKPLLQSRNAAVVMAVAQ---LFHHLAPRREVAIIAKALVR-LLR--S-S-REVQTVVLTTIASLAVKRRALFV 317 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~aVv~ea~~---~i~~l~~~~~~~~~~~~L~~-lL~--s-~-~niryv~L~~l~~l~~~~p~~~~ 317 (645)
..++......+.+.++-|-+.|++ +++++.|+.-+ +-|.. ..+ + . ++.+..+=+++.++++...+++.
T Consensus 767 ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il----~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~ 842 (982)
T KOG4653|consen 767 EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDIL----PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF 842 (982)
T ss_pred HHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhH----HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH
Confidence 345666677788999999999999 56666664333 33333 232 1 1 35555555888888887777777
Q ss_pred hhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc-ccHHHHHHH---
Q psy8267 318 PYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIA-QVTDTCLTG--- 393 (645)
Q Consensus 318 ~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~-~~~~~~v~~--- 393 (645)
.|.. .+++-++.=++++|..+|..+....|.|+...+ ...+|..+.
T Consensus 843 ~y~~------------------------------~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~ 892 (982)
T KOG4653|consen 843 KYKA------------------------------VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQL 892 (982)
T ss_pred HHHH------------------------------HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 6542 233444444556677778777777787776543 223344443
Q ss_pred HHHhhccCCh-hhHHHHHHHHHHHhhc
Q psy8267 394 LVSLLSYSDE-AVVAESVVVIKNLLQT 419 (645)
Q Consensus 394 ll~LL~~~~~-~v~~e~v~~i~~il~~ 419 (645)
++.+....|. .+...++.++..+++.
T Consensus 893 Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 893 ILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 3444443333 3666677777777753
No 157
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=74.26 E-value=63 Score=30.97 Aligned_cols=78 Identities=13% Similarity=-0.015 Sum_probs=54.5
Q ss_pred HHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCCh-hhHHHHHHHHH
Q psy8267 336 LKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDE-AVVAESVVVIK 414 (645)
Q Consensus 336 ~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~-~v~~e~v~~i~ 414 (645)
+++.-+.+=.++.|.+.++++|.+...+.+++....++..|-..|..-|.....|...+-. +..... .+....+..+.
T Consensus 2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~-l~~~~~~~f~~~ll~~~~ 80 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAA-LNSRFPSEFRSLLLNRCQ 80 (209)
T ss_dssp HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH-HHHHCHHHHHHHHHHHHH
T ss_pred chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHH-HhccchhhHHHHHHHHHH
Confidence 3455555555699999999999998777789999999999999998888777666664433 333222 34444444433
No 158
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=73.94 E-value=24 Score=34.47 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=54.3
Q ss_pred HHhhcCCC-ChHHHHHHHHHHHHHhhc-Cchh----HHHHHHHHHHhhcCCChhHHHHHHHHHHHHC---hhhhhhhHHH
Q psy8267 95 IKDSSLDM-SPYVRKTAAHAIPKLYSL-DPEQ----KEELVLVIEKLLQDKTTLVVGSAVMAFEEVC---PERIDMIHKS 165 (645)
Q Consensus 95 I~~~l~d~-~pyVRK~Aalal~kl~~~-~p~~----~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~---~~~~~li~~~ 165 (645)
....+... +|| |=-|..++..+.+. .++. +++++.-|++.|+.+|+.|..+++.++..++ +.-.+.+.++
T Consensus 43 f~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPy 121 (183)
T PF10274_consen 43 FFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPY 121 (183)
T ss_pred HHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34444443 554 34566666666666 5553 4788889999999999999999999998884 3223567788
Q ss_pred HHHHHHHh
Q psy8267 166 YRKLCNLL 173 (645)
Q Consensus 166 ~~kL~~~L 173 (645)
|++|+..+
T Consensus 122 yrqLLp~l 129 (183)
T PF10274_consen 122 YRQLLPVL 129 (183)
T ss_pred HHHHHHHH
Confidence 88887644
No 159
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=73.60 E-value=20 Score=34.99 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=63.4
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhc---CchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhh
Q psy8267 86 MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL---DPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMI 162 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~---~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li 162 (645)
.+++.-.+.|.++..++++.||..|+..+.-+.+. +|- +.++.+..|..|+++.+..-|...+.++..+..+++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~---~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK---QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH---HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 35677788889999999999999999988877763 554 457778889999999999999999999987777766
Q ss_pred HHHH
Q psy8267 163 HKSY 166 (645)
Q Consensus 163 ~~~~ 166 (645)
+..+
T Consensus 81 ~~~~ 84 (187)
T PF12830_consen 81 ESRY 84 (187)
T ss_pred HHHH
Confidence 5543
No 160
>KOG1293|consensus
Probab=73.30 E-value=35 Score=39.31 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHhC-------CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHH
Q psy8267 66 DPNQLIRASALRVLSS-------IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIE 133 (645)
Q Consensus 66 ~~N~~iralALr~ls~-------I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~ 133 (645)
..+..+++.|+-++-+ ++..-=-..++.++.+.+.||+..|.+.+.-|+..+.-...+.. .+.++.+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 4567888888765533 23221123456666788899999999999999999886655543 46789999
Q ss_pred HhhcCCChhHHHHHHHHHHHHCh---h--hhhhhHHHH-HHHHHHhcCCCchhHHHHHHHHHHHH
Q psy8267 134 KLLQDKTTLVVGSAVMAFEEVCP---E--RIDMIHKSY-RKLCNLLVDVDEWGQVFILNMLTRYA 192 (645)
Q Consensus 134 ~lL~D~~~~V~~sav~~l~ei~~---~--~~~li~~~~-~kL~~~L~~~~~W~Qv~iL~lL~~y~ 192 (645)
+++.|.++.+..+++-++..+.= + ...++.+.. +.+.....++++=.|-..+++|+.+.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 99999999999999988877641 1 113344433 34555557777667999999998775
No 161
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=73.25 E-value=85 Score=31.15 Aligned_cols=132 Identities=16% Similarity=0.067 Sum_probs=77.2
Q ss_pred HHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCC
Q psy8267 23 VVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDM 102 (645)
Q Consensus 23 vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~ 102 (645)
+-.+..++-++.+-++-.++......-.+-.+-.+-.+..+ .+.=..+=++|-+.+|.+... -+.....+.+...|.
T Consensus 51 ~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~-~~~Wd~vD~~~~~i~g~~~~~--~~~~~~~l~~W~~s~ 127 (208)
T cd07064 51 VLELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITT-KSWWDTVDSLAKVVGGILLAD--YPEFEPVMDEWSTDE 127 (208)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcC-CchHHHHHHHHHHHhHHHHhC--ChhHHHHHHHHHcCC
Confidence 34466666666666666555544322212111111112222 222245556666666553211 122345567888999
Q ss_pred ChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 103 SPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 103 ~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
+.++|+.|+.+..+.-+ ..+ .+.+.+.+..++.|++..|.-+.-=+|-++...++
T Consensus 128 ~~W~rR~ai~~~l~~~~-~~~-~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~ 182 (208)
T cd07064 128 NFWLRRTAILHQLKYKE-KTD-TDLLFEIILANLGSKEFFIRKAIGWALREYSKTNP 182 (208)
T ss_pred cHHHHHHHHHHHHHHHH-ccC-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCH
Confidence 99999999998776433 222 35567778889999998888776677888875444
No 162
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=72.63 E-value=82 Score=29.28 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=50.7
Q ss_pred HHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhh
Q psy8267 248 LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPY 319 (645)
Q Consensus 248 ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~ 319 (645)
+-+++.+.+...|-+..++.+-.+-. .+ ..-+.++.++.+-|+ .+|++++.+|..+..++.....-|..+
T Consensus 6 iekAT~~~l~~~dw~~ileicD~In~-~~-~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e 76 (139)
T cd03567 6 LNKATNPSNREEDWEAIQAFCEQINK-EP-EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSE 76 (139)
T ss_pred HHHHcCccCCCCCHHHHHHHHHHHHc-CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 44566777777888888888887743 33 234567788877774 778999999999998887666555543
No 163
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=71.99 E-value=72 Score=33.85 Aligned_cols=237 Identities=15% Similarity=0.112 Sum_probs=131.6
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHH---H----HHHHHHHHHHhC---CChhHHHHHHHHHHHHHhhcccc
Q psy8267 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRRE---V----AIIAKALVRLLR---SSREVQTVVLTTIASLAVKRRAL 315 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~---~----~~~~~~L~~lL~---s~~niryv~L~~l~~l~~~~p~~ 315 (645)
.++++.+..++|+.+....+=|++|.-.+....+ + ++++..++.+++ ....+||-.|-.+-.+.- +|..
T Consensus 148 ~LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~ 226 (432)
T COG5231 148 LLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKEC 226 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHH
Confidence 4677777888898888877778888776653221 1 245556667775 346899998888766643 3322
Q ss_pred ---hhhhhceE-----EEcCCCChHHHHHHHHHHHHccCcCC------------HHHHHHHHHHhhccccHHHHHHHHHH
Q psy8267 316 ---FVPYLKSF-----YVRSSDPTHVKTLKLELLTTLASETS------------IASILREFQTYISSVDKAFVAATVQA 375 (645)
Q Consensus 316 ---~~~~~~~f-----~~l~~d~~~Ir~~kLdlL~~L~~~~N------------v~~Il~EL~~yl~~~d~~~~~~~i~~ 375 (645)
++++...| .++.+--.-|-|..+-|+..+++++- +..-++-|++- .-+|++++..+-+-
T Consensus 227 aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~er-kysDEel~~di~~i 305 (432)
T COG5231 227 AQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLER-KYSDEELVIDIERI 305 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhc-CCChHHHHHHHHHH
Confidence 22332222 12333335567778888888888653 33333333321 12576776664332
Q ss_pred HHHHHhhcc--ccHHHHHHHH-HHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHh
Q psy8267 376 IGKCAANIA--QVTDTCLTGL-VSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLG 452 (645)
Q Consensus 376 I~~la~k~~--~~~~~~v~~l-l~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilG 452 (645)
=.++.+.+- ...+.|++-| ..+|.-+..|...+-|..=.+.+.++ .-+++++|.+++..-...-..+.++-=+|
T Consensus 306 ~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd---ny~i~k~L~~~lq~n~~nt~i~vAc~Di~ 382 (432)
T COG5231 306 RSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD---NYEIVKVLKKYLQSNNPNTWICVACSDIF 382 (432)
T ss_pred HHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh---hHHHHHHHHHHHhcCCCCceEeeeHhhHH
Confidence 233333222 1223454433 22444455678888886533333222 13467777777765322223444566677
Q ss_pred cccccCCCchHHHHHH------HHHhhcCCchHHHHHHHHhh
Q psy8267 453 EYSHLVPALGPDVLRK------AAITFVNEEDIVKLQVLNLA 488 (645)
Q Consensus 453 Ey~~~i~~~~~diLr~------l~~~f~~e~~~vk~~iL~~~ 488 (645)
.|....|+ .-+++.+ +.+-....+++||...|.+.
T Consensus 383 ~~Vr~~PE-~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~ 423 (432)
T COG5231 383 QLVRASPE-INAVLSKYGVKEIIMNLINHDDDDVKFEALQAL 423 (432)
T ss_pred HHHHhCch-HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHH
Confidence 77777666 4444433 22223346688998877765
No 164
>KOG2032|consensus
Probab=71.86 E-value=18 Score=40.26 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=46.7
Q ss_pred cCCCCHHHHHHHHHHHhCCCc------cccHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhcCch-hH----HHHHHH
Q psy8267 64 LKDPNQLIRASALRVLSSIRV------PMIIPIVMLAIKDSSLDM-SPYVRKTAAHAIPKLYSLDPE-QK----EELVLV 131 (645)
Q Consensus 64 L~~~N~~iralALr~ls~I~~------~ei~~~l~~~I~~~l~d~-~pyVRK~Aalal~kl~~~~p~-~~----~~~~~~ 131 (645)
..||+..+|.+|+|.|++.-. ....+.+..+|.+.+-|+ +.-|-=.|..|+.++..+-.+ .+ -+...+
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 356666666666666666532 233444445555554443 455555555555555443211 11 123444
Q ss_pred HHHhhcCCChhHHHHHHHHHHHH
Q psy8267 132 IEKLLQDKTTLVVGSAVMAFEEV 154 (645)
Q Consensus 132 l~~lL~D~~~~V~~sav~~l~ei 154 (645)
+..+.+|.++.+..+|..+|..+
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L 369 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGAL 369 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHH
Confidence 55566666666665665555544
No 165
>KOG4535|consensus
Probab=71.68 E-value=7.2 Score=43.07 Aligned_cols=122 Identities=22% Similarity=0.288 Sum_probs=79.2
Q ss_pred hccCCchhHHHHHHHHHHhcccCch-----HHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC--------------Ccccc
Q psy8267 27 VVSKNIEVKKLVYVYLARYAEEQQD-----LALLSISTFQRALKDPNQLIRASALRVLSSI--------------RVPMI 87 (645)
Q Consensus 27 i~s~~~~~KkL~Yl~l~~~~~~~~d-----l~lL~iNsl~kDL~~~N~~iralALr~ls~I--------------~~~ei 87 (645)
.+..|--.||.-|=|+..+....++ +++| -|+|+|+--||+||.+++.| +...+
T Consensus 21 ~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l-------~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~f 93 (728)
T KOG4535|consen 21 LSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTL-------TLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAF 93 (728)
T ss_pred HHHHhhhhhhhhhceeeeecCCCCCCCCceeeEE-------ecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCC
Confidence 3455667899999999998876554 3333 27999999999999999765 11111
Q ss_pred HHH---H---HHHHHhhc-----CCCChHHHHHHHHHHHHHhhcCch------hHHHHHHHHHHhhcCCChhHHHHHHHH
Q psy8267 88 IPI---V---MLAIKDSS-----LDMSPYVRKTAAHAIPKLYSLDPE------QKEELVLVIEKLLQDKTTLVVGSAVMA 150 (645)
Q Consensus 88 ~~~---l---~~~I~~~l-----~d~~pyVRK~Aalal~kl~~~~p~------~~~~~~~~l~~lL~D~~~~V~~sav~~ 150 (645)
.|. + +....+++ ...+|-|--..+-|+..+.+-.|= .+-++...+++++..+|+.|..+++.+
T Consensus 94 tpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~ 173 (728)
T KOG4535|consen 94 TPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTL 173 (728)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHH
Confidence 110 0 11112221 223444444455666666666552 235677889999999999999998888
Q ss_pred HHHHC
Q psy8267 151 FEEVC 155 (645)
Q Consensus 151 l~ei~ 155 (645)
+..+.
T Consensus 174 ~~~~v 178 (728)
T KOG4535|consen 174 LGAIV 178 (728)
T ss_pred HHHHH
Confidence 77665
No 166
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=70.63 E-value=10 Score=37.00 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhh
Q psy8267 86 MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLL 136 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL 136 (645)
-+++.++.+++++++..+|-|.+.+..++.++....+-.=+.+.+....+|
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 467889999999999999999999999999986655544455666655543
No 167
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=70.61 E-value=34 Score=35.39 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=35.8
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhhccC--ChhhHHHHHHHHHHHh
Q psy8267 355 REFQTYISSVDKAFVAATVQAIGKCAANIAQV--TDTCLTGLVSLLSYS--DEAVVAESVVVIKNLL 417 (645)
Q Consensus 355 ~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~--~~~~v~~ll~LL~~~--~~~v~~e~v~~i~~il 417 (645)
+.|-.|+++.|...|.+++..++.+..+.|.. ...-+.++++++..+ +......++..+..++
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~ 68 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALV 68 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH
Confidence 45666777777777777777777776666632 233344444444322 2334445556666665
No 168
>KOG1293|consensus
Probab=69.70 E-value=1.5e+02 Score=34.41 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=86.8
Q ss_pred HHcCCCCHHHHHHHHHHHhCCCcc----------ccHHHHHHHHHh-hcCCCChHHHHHHHHHHHHHhh----cCchhH-
Q psy8267 62 RALKDPNQLIRASALRVLSSIRVP----------MIIPIVMLAIKD-SSLDMSPYVRKTAAHAIPKLYS----LDPEQK- 125 (645)
Q Consensus 62 kDL~~~N~~iralALr~ls~I~~~----------ei~~~l~~~I~~-~l~d~~pyVRK~Aalal~kl~~----~~p~~~- 125 (645)
..++...|..|.++++-....... ++.+.-.....- ...+.+..++..|++|+..+-+ ++.+..
T Consensus 338 ~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~ 417 (678)
T KOG1293|consen 338 ASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKR 417 (678)
T ss_pred HHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 456678888898888876543211 222222222222 2345588899999999766543 222221
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhh----hhhhHH-HHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy8267 126 EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER----IDMIHK-SYRKLCNLLVDVDEWGQVFILNMLTRYA 192 (645)
Q Consensus 126 ~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~----~~li~~-~~~kL~~~L~~~~~W~Qv~iL~lL~~y~ 192 (645)
.+.++.+.++|.|++..|.++++.+++.+.-+- -.++.. -+.++.+.+.++++-....-+..|....
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 356777888999999999999999999887432 223332 3567888889999988888888887654
No 169
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=69.56 E-value=7.8 Score=28.15 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=31.7
Q ss_pred HHHHHhhcCchhH--HHHHHHHHHhhcCCChhHHHHHHHH
Q psy8267 113 AIPKLYSLDPEQK--EELVLVIEKLLQDKTTLVVGSAVMA 150 (645)
Q Consensus 113 al~kl~~~~p~~~--~~~~~~l~~lL~D~~~~V~~sav~~ 150 (645)
|+..+...+|+.. +...+.+.+.|.|+++.|.-+|+.+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4667778899875 5788899999999999999888764
No 170
>KOG0168|consensus
Probab=69.51 E-value=2.6e+02 Score=33.69 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=86.6
Q ss_pred HHHHHHHcCCC-CHHHHHHHHHHHhCC---Cccc-----cHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhcCchhH-
Q psy8267 57 ISTFQRALKDP-NQLIRASALRVLSSI---RVPM-----IIPIVMLAIKDSSLDM-SPYVRKTAAHAIPKLYSLDPEQK- 125 (645)
Q Consensus 57 iNsl~kDL~~~-N~~iralALr~ls~I---~~~e-----i~~~l~~~I~~~l~d~-~pyVRK~Aalal~kl~~~~p~~~- 125 (645)
.+.+..-|+.. +|...--||.-||.+ ++++ .++.+.+.+..+++|. ++.+---|+-|+..++...|...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 35566666655 888888899888863 3333 4577888999999997 89999999999999999999743
Q ss_pred ----HHHHHHHH-HhhcCCChhHHHHHHHHHHHHChhhhhh-hH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 126 ----EELVLVIE-KLLQDKTTLVVGSAVMAFEEVCPERIDM-IH-KSYRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 126 ----~~~~~~l~-~lL~D~~~~V~~sav~~l~ei~~~~~~l-i~-~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
+..++.+. +|+-=+=.-|.-.++.|+..|....... +. +.+.-.+..|.=+.--.|-+.|.+....|.
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23444443 3333333445556777777776543321 11 111111222222334467778887777774
No 171
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=69.17 E-value=21 Score=36.62 Aligned_cols=66 Identities=27% Similarity=0.418 Sum_probs=48.5
Q ss_pred HHHhhcCCC--ChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhh----cCCChhHHHHHHHHHHHHChhhh
Q psy8267 94 AIKDSSLDM--SPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLL----QDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 94 ~I~~~l~d~--~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL----~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
.+++.+.|+ ..|||-.|.-|+..+....|...++.+..+..++ +.++..+.++-+...++++|...
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL 186 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEEL 186 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHh
Confidence 456777776 8999999999999999998887766555555554 33444456677777888887654
No 172
>KOG2933|consensus
Probab=68.55 E-value=39 Score=35.58 Aligned_cols=117 Identities=14% Similarity=0.204 Sum_probs=79.5
Q ss_pred HHHHHHHHHhccc-CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC---Ccccc---HHHHHHHHHhhcCCCChHHHH
Q psy8267 36 KLVYVYLARYAEE-QQDLALLSISTFQRALKDPNQLIRASALRVLSSI---RVPMI---IPIVMLAIKDSSLDMSPYVRK 108 (645)
Q Consensus 36 kL~Yl~l~~~~~~-~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I---~~~ei---~~~l~~~I~~~l~d~~pyVRK 108 (645)
..-|+....|..- +|| .+.+...+-|.|.|=...+-+|..|.++ ..+++ ...++..|.+.+.++..-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 4557766666553 455 4556667788888888888887776643 33333 334566778888999999999
Q ss_pred HHHHHHHHHhhcCchhHH-HHHHHHHHhh---cCCChhHHHHHHHHHHHHC
Q psy8267 109 TAAHAIPKLYSLDPEQKE-ELVLVIEKLL---QDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 109 ~Aalal~kl~~~~p~~~~-~~~~~l~~lL---~D~~~~V~~sav~~l~ei~ 155 (645)
+|++|+.-+|....+.+. ++-..+..|| .+.+..|+-.|-.++..+.
T Consensus 148 aA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV 198 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMV 198 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 999999999987666543 3333444444 2456778887777777665
No 173
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=67.43 E-value=62 Score=30.74 Aligned_cols=139 Identities=15% Similarity=0.190 Sum_probs=72.2
Q ss_pred cCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHH-HHHHHHHHhhc--Cchh
Q psy8267 48 EQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKT-AAHAIPKLYSL--DPEQ 124 (645)
Q Consensus 48 ~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~-Aalal~kl~~~--~p~~ 124 (645)
+.|+++-+..+-++.+ .++.+|--|+|+||-||--+ |.-...+.+...+.++-.-.. ........-.. ..|.
T Consensus 7 ~yP~LL~~L~~iLk~e---~s~~iR~E~lr~lGilGALD--P~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 7 DYPELLDILLNILKTE---QSQSIRREALRVLGILGALD--PYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEE 81 (160)
T ss_pred HhHHHHHHHHHHHHhC---CCHHHHHHHHHHhhhccccC--cHHHhcccccCCccccccccccchhhHHhhccCCCchHH
Confidence 3478877888888877 44999999999999998655 444443333333211100000 00011111111 1111
Q ss_pred -H-HHHHHHHHHhhcCCCh-----hHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy8267 125 -K-EELVLVIEKLLQDKTT-----LVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRY 191 (645)
Q Consensus 125 -~-~~~~~~l~~lL~D~~~-----~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y 191 (645)
. .-.+..+.+.|+|++. .|+.+.+..|.........++.+.+..+++.+..+++-..-.+++-|+..
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1 1234555666777543 23333333333333334455666666777777777765555566555543
No 174
>KOG3723|consensus
Probab=67.28 E-value=85 Score=35.66 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=54.0
Q ss_pred HHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHHHHHHHhhcCCchHHHHHHHHhhh
Q psy8267 414 KNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 414 ~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr~l~~~f~~e~~~vk~~iL~~~~ 489 (645)
.-|.|+.|+.-+..+..|+..+.+-+....+-.++-.|..|+........|.++.+.+.|..-.+. +.+|.|++.
T Consensus 224 ~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p~~~~~-~a~i~T~~g 298 (851)
T KOG3723|consen 224 VLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFLEMLKEIGERFPYLTGQ-MARIYTAVG 298 (851)
T ss_pred HHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCccHH-HHHHHHHhc
Confidence 345567788888888888888877666777778888899998765555778888888887765442 334555544
No 175
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=67.27 E-value=1.7e+02 Score=30.92 Aligned_cols=155 Identities=20% Similarity=0.121 Sum_probs=86.1
Q ss_pred hHHHHHHHHhCCCCcc-------cchHHHHHHhccCCchhHHHHHHHHHHhc------ccCchHHHHHHHHHHHHcCCCC
Q psy8267 2 AKGTCCYMMAKGRDAS-------DLFPAVVKNVVSKNIEVKKLVYVYLARYA------EEQQDLALLSISTFQRALKDPN 68 (645)
Q Consensus 2 alkkli~l~~~G~dvs-------~lf~~vvkli~s~~~~~KkL~Yl~l~~~~------~~~~dl~lL~iNsl~kDL~~~N 68 (645)
||+.++.++..-+-.. .+...+.+.+...+-++..+++-.+..++ ....++.--+.+.+++-+.|..
T Consensus 63 aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s 142 (309)
T PF05004_consen 63 ALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSS 142 (309)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCc
Confidence 5666666665544322 24555666665444467766654443331 2334444455666676666543
Q ss_pred --HHHHHHHHHHHhCC---Cc--cccHH---HHHHHHHhhc---CC---------CChHHHHHHHHHHHHHhhcCch--h
Q psy8267 69 --QLIRASALRVLSSI---RV--PMIIP---IVMLAIKDSS---LD---------MSPYVRKTAAHAIPKLYSLDPE--Q 124 (645)
Q Consensus 69 --~~iralALr~ls~I---~~--~ei~~---~l~~~I~~~l---~d---------~~pyVRK~Aalal~kl~~~~p~--~ 124 (645)
+..|+.++++||-+ +. .+-+. ..+..|.... .| +++-|.-.|+.|-.=+...-|. .
T Consensus 143 ~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~ 222 (309)
T PF05004_consen 143 ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKL 222 (309)
T ss_pred cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHH
Confidence 45665555555432 22 22223 2233222211 11 2467888888877666665555 2
Q ss_pred ---HHHHHHHHHHhhcCCChhHHHHH---HHHHHHHCh
Q psy8267 125 ---KEELVLVIEKLLQDKTTLVVGSA---VMAFEEVCP 156 (645)
Q Consensus 125 ---~~~~~~~l~~lL~D~~~~V~~sa---v~~l~ei~~ 156 (645)
.+..++.+..+|+..|..|..+| +.++.|+..
T Consensus 223 ~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 223 EDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 35578889999999999998875 444455543
No 176
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.04 E-value=99 Score=28.79 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=47.5
Q ss_pred HHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcccchhh
Q psy8267 248 LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRRALFVP 318 (645)
Q Consensus 248 ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p~~~~~ 318 (645)
+-+++.+.+...+-+..++.+..+-. .+ ..-+.++.+|.+-| ++++++++.+|..+..++......|..
T Consensus 9 I~kATs~~l~~~dw~~ileicD~In~-~~-~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ 78 (142)
T cd03569 9 IEKATSELLGEPDLASILEICDMIRS-KD-VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHD 78 (142)
T ss_pred HHHHcCcccCccCHHHHHHHHHHHhC-CC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHH
Confidence 44455566666677888888777743 11 23456777887766 478999999999999888765555543
No 177
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=65.24 E-value=22 Score=39.48 Aligned_cols=87 Identities=10% Similarity=0.189 Sum_probs=50.4
Q ss_pred HHHHHhhcCCcchHHHHHHHHHhhccCC----hHHHHHHHHHHHhcccccCCC--chHHHHHHHHHhhc-----------
Q psy8267 412 VIKNLLQTQPEAYTDIIRHMVRLSDSIT----VPTARAAILWLLGEYSHLVPA--LGPDVLRKAAITFV----------- 474 (645)
Q Consensus 412 ~i~~il~~~p~~~~~~i~~L~~~l~~i~----~~~ak~~~iwilGEy~~~i~~--~~~diLr~l~~~f~----------- 474 (645)
.+-.+.+++|.+-...-+.+.+.+.+.. -.+.-..++|+||||+.--.+ +..|+++.+.+...
T Consensus 291 ~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~~~~~~ 370 (459)
T PF14764_consen 291 QLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEVTQSRR 370 (459)
T ss_pred HHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455667788765555555666654432 233444579999999865443 34555444333211
Q ss_pred -------CCchHHHHHHHHhhhhhcccCCCC
Q psy8267 475 -------NEEDIVKLQVLNLAPVEAAGITTL 498 (645)
Q Consensus 475 -------~e~~~vk~~iL~~~~~~a~~y~~l 498 (645)
...+.+=..++|+.+|-|....+|
T Consensus 371 ~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl 401 (459)
T PF14764_consen 371 DPSASRPSSQPRLMTVLMTALAKLASRSQDL 401 (459)
T ss_pred cccccCCCCchhHHHHHHHHHHHHHHhCHhh
Confidence 123445556777777877777664
No 178
>KOG1243|consensus
Probab=64.81 E-value=25 Score=40.69 Aligned_cols=137 Identities=14% Similarity=0.195 Sum_probs=93.9
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCc--hHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC----CccccHHHHH
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQ--DLALLSISTFQRALKDPNQLIRASALRVLSSI----RVPMIIPIVM 92 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~--dl~lL~iNsl~kDL~~~N~~iralALr~ls~I----~~~ei~~~l~ 92 (645)
+-|.++|+++++|-.+|-+.--|+..|.+.=+ .+---+...+..-+.|.|+.+|..+|++|..+ .-..+-..++
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ell 410 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELL 410 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHH
Confidence 56788999999998888777777777765322 22224556788889999999999999999765 3334555677
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhc-CchhHH-HHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 93 LAIKDSSLDMSPYVRKTAAHAIPKLYSL-DPEQKE-ELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 93 ~~I~~~l~d~~pyVRK~Aalal~kl~~~-~p~~~~-~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
....+.-.|.++-+|-+...|+.|+-.. +|.... -+.-...+-+.|.=+--..+++.++...+
T Consensus 411 r~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 411 RYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred HHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 7778888899999999999999998764 343322 12222333455544434445666665444
No 179
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=64.59 E-value=50 Score=37.72 Aligned_cols=98 Identities=22% Similarity=0.207 Sum_probs=65.1
Q ss_pred cccchHHHHHHhccCCchhHHHHHHHHHHhccc----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHH-
Q psy8267 16 ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEE----QQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPI- 90 (645)
Q Consensus 16 vs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~----~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~- 90 (645)
|...|-++++-..|++-.+++=+.-.+.+..+. +.+++=...-.+.+-+-|..+.+|--|+.+||.....+.-+.
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 556788889988898877776555544444432 344444555667777889999999999999998753332221
Q ss_pred -HHHHHHh-hcCCCChHHHHHHHHH
Q psy8267 91 -VMLAIKD-SSLDMSPYVRKTAAHA 113 (645)
Q Consensus 91 -l~~~I~~-~l~d~~pyVRK~Aala 113 (645)
+..-++. .-+|||.-||+.|.+-
T Consensus 169 ~~~n~l~~~vqnDPS~EVRr~alln 193 (885)
T COG5218 169 RIVNLLKDIVQNDPSDEVRRLALLN 193 (885)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1111222 2368999999998764
No 180
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=64.18 E-value=1.2e+02 Score=27.79 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=46.0
Q ss_pred hhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcccchhhhh
Q psy8267 251 NAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRRALFVPYL 320 (645)
Q Consensus 251 ~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p~~~~~~~ 320 (645)
.+.+.+...+-+..++.+..+-+-. ..-+.++.+|.+-| +++|++++.+|..+-.++......|..++
T Consensus 8 ATs~~~~~~D~~~il~icd~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 8 ATSPSLEEPDWALNLELCDLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred HcCcccCCccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 3344455566677777777664332 23456778887767 47899999999999998876666565443
No 181
>KOG1991|consensus
Probab=63.50 E-value=2.2e+02 Score=34.66 Aligned_cols=101 Identities=18% Similarity=0.159 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC-----ccccHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHhhcCchh-
Q psy8267 52 LALLSISTFQRALKDPNQLIRASALRVLSSIR-----VPMIIPIVMLAIKDSSL-DMSPYVRKTAAHAIPKLYSLDPEQ- 124 (645)
Q Consensus 52 l~lL~iNsl~kDL~~~N~~iralALr~ls~I~-----~~ei~~~l~~~I~~~l~-d~~pyVRK~Aalal~kl~~~~p~~- 124 (645)
+=.+.+|.+-=+++|+-=+.||-|.-+++.+. .+.+....+..+++|+. |++--||=.||+|+..+..-+++.
T Consensus 459 mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~ 538 (1010)
T KOG1991|consen 459 MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQAD 538 (1010)
T ss_pred HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhh
Confidence 34477888888889999999999988887654 56667778888899998 889999999999999998876643
Q ss_pred ------HHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy8267 125 ------KEELVLVIEKLLQDKTTLVVGSAVMAFE 152 (645)
Q Consensus 125 ------~~~~~~~l~~lL~D~~~~V~~sav~~l~ 152 (645)
++..++.+.++.++-+--.+.+++-.+.
T Consensus 539 e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV 572 (1010)
T KOG1991|consen 539 EKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIV 572 (1010)
T ss_pred hhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3456666667777765555555554443
No 182
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=63.07 E-value=46 Score=30.56 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=51.9
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC---Cc----ccc-HHHHHHHHHhhcCCC--ChHHH
Q psy8267 38 VYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI---RV----PMI-IPIVMLAIKDSSLDM--SPYVR 107 (645)
Q Consensus 38 ~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I---~~----~ei-~~~l~~~I~~~l~d~--~pyVR 107 (645)
.-+.++-..+.+++-.--++.+++|-|+++||.+.-.||..|-.+ ++ .++ ....+..+.+.+.++ .|.||
T Consensus 20 ~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk 99 (133)
T smart00288 20 LILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVK 99 (133)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHH
Confidence 334555555666677788889999999999999999999887543 11 111 122444555666554 34478
Q ss_pred HHHHHHHHHHh
Q psy8267 108 KTAAHAIPKLY 118 (645)
Q Consensus 108 K~Aalal~kl~ 118 (645)
+++...+..-+
T Consensus 100 ~kil~li~~W~ 110 (133)
T smart00288 100 KRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHH
Confidence 77776655443
No 183
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=62.91 E-value=87 Score=29.28 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHH------HHHHHHHhcC-CCchhH
Q psy8267 109 TAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKS------YRKLCNLLVD-VDEWGQ 181 (645)
Q Consensus 109 ~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~------~~kL~~~L~~-~~~W~Q 181 (645)
...+-++-..+.+++...+.+..|.+-|..+||-|+.-|+.++..+.......+|.. ...|.+++.+ .++=.+
T Consensus 19 ~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk 98 (144)
T cd03568 19 GLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVK 98 (144)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHH
Confidence 344555555655655556677788888899999999999988876654333333321 2334444555 566677
Q ss_pred HHHHHHHHHHHhhh
Q psy8267 182 VFILNMLTRYARTQ 195 (645)
Q Consensus 182 v~iL~lL~~y~r~~ 195 (645)
-+++.++......+
T Consensus 99 ~kil~li~~W~~~f 112 (144)
T cd03568 99 EKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999988664
No 184
>KOG0211|consensus
Probab=62.69 E-value=3.4e+02 Score=32.61 Aligned_cols=391 Identities=15% Similarity=0.167 Sum_probs=171.9
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh--HHHHHHHHHHhhcCCChhHHHHHHHHHHHHCh---hhh
Q psy8267 85 PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ--KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCP---ERI 159 (645)
Q Consensus 85 ~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~--~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~---~~~ 159 (645)
..+-..+-+-..++..|..|.||++++--+..+-+.-+.. .....+....|..|....|..+|+..+..+.+ +..
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence 3344445555566777788888888887777666654443 34566677777777777777777766665542 111
Q ss_pred hhhHHHHHHHHHHhcCCCchhHHHHHH-HHHHHHhhhcCCCCCCCCC-----CCCCCCCCCCCCCCCCcCCccccccc--
Q psy8267 160 DMIHKSYRKLCNLLVDVDEWGQVFILN-MLTRYARTQFTDPNLNEND-----SSEDDDDLDGEDKKPFYDDETTRDTK-- 231 (645)
Q Consensus 160 ~li~~~~~kL~~~L~~~~~W~Qv~iL~-lL~~y~r~~~~~P~~~~~~-----s~~~~~~l~~~~~~~f~~~~~~~~~~-- 231 (645)
+..|.....+++...+. .|-+..... .+...... ..|...... .....+...+ .-++......+.
T Consensus 312 d~~~~~~~~l~~~~~d~-~~~v~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~~l~~~~~~e----~r~a~a~~~~~l~~ 384 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDG-SWRVSYMVADKFSELSSA--VGPSATRTQLVPPVSNLLKDEEWE----VRYAIAKKVQKLAC 384 (759)
T ss_pred hhhhhhhHHHHHHhcCh-hHHHHHHHhhhhhhHHHH--hccccCcccchhhHHHHhcchhhh----hhHHhhcchHHHhh
Confidence 33333334444444332 222222111 10000000 001000000 0000000000 000000000000
Q ss_pred -ccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHhC-CChhHHHHHHHHH
Q psy8267 232 -NETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR----REVAIIAKALVRLLR-SSREVQTVVLTTI 305 (645)
Q Consensus 232 -~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~----~~~~~~~~~L~~lL~-s~~niryv~L~~l 305 (645)
........+.+ ..++..+.-+..+.|.-|--+.+..++.+.|. ..+......+...++ ..+.+|--..+.+
T Consensus 385 ~l~~~~~~~i~~---~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 385 YLNASCYPNIPD---SSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKL 461 (759)
T ss_pred hcCcccccccch---hhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHH
Confidence 00000011111 12233334444455555554444444444331 123333444454554 4466666655554
Q ss_pred HHHHhhccc-----chhhhhceEEEcCCC-ChHHHHHHHHHHHHccCcCCHHHHHHHHH----HhhccccHHHHHHHHHH
Q psy8267 306 ASLAVKRRA-----LFVPYLKSFYVRSSD-PTHVKTLKLELLTTLASETSIASILREFQ----TYISSVDKAFVAATVQA 375 (645)
Q Consensus 306 ~~l~~~~p~-----~~~~~~~~f~~l~~d-~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~----~yl~~~d~~~~~~~i~~ 375 (645)
..+-...+. +-+.++..+-.+..| -..+|..-++-+-.++...=.+..-.++. .|+.+...++++.+...
T Consensus 462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~ 541 (759)
T KOG0211|consen 462 SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARN 541 (759)
T ss_pred HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 444332221 122344433333322 36677777777776666655444444443 35566678899999999
Q ss_pred HHHHHhhccccHHHHHHHHHH-hhccCCh--hh-HHHHHHHHHHHhh--cCCcchHHHHHHHHHhhccCChHHHHHHHHH
Q psy8267 376 IGKCAANIAQVTDTCLTGLVS-LLSYSDE--AV-VAESVVVIKNLLQ--TQPEAYTDIIRHMVRLSDSITVPTARAAILW 449 (645)
Q Consensus 376 I~~la~k~~~~~~~~v~~ll~-LL~~~~~--~v-~~e~v~~i~~il~--~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iw 449 (645)
...++++|. .+|+..+++. +|...++ |. .--+...+.-+.. ..+-..+..+.-+.+...+ ..|++|..++.
T Consensus 542 l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D-~vanVR~nvak 618 (759)
T KOG0211|consen 542 LPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKD-PVANVRINVAK 618 (759)
T ss_pred hHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccC-CchhhhhhHHH
Confidence 999999997 4555554332 3332222 32 2222222222221 1122222233322222222 35667766666
Q ss_pred HHhcccccCCC-chHHHHHHHHHhhc-CCchHHHHHHHHhh
Q psy8267 450 LLGEYSHLVPA-LGPDVLRKAAITFV-NEEDIVKLQVLNLA 488 (645)
Q Consensus 450 ilGEy~~~i~~-~~~diLr~l~~~f~-~e~~~vk~~iL~~~ 488 (645)
.+-.+...... ...+.+..+...+. +.+..||.-..-+.
T Consensus 619 ~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 619 HLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAF 659 (759)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 66555543322 12233444433332 34455665444333
No 185
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=62.46 E-value=99 Score=28.50 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHH------HHHHHHHhc--CCCch
Q psy8267 108 KTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKS------YRKLCNLLV--DVDEW 179 (645)
Q Consensus 108 K~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~------~~kL~~~L~--~~~~W 179 (645)
-.+.+-++-+.+.+++...+.+..|.+-|...+|.|+.-|+.++..+......-+|.. ...|.+.+. ...++
T Consensus 23 w~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~ 102 (140)
T PF00790_consen 23 WSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPE 102 (140)
T ss_dssp HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCch
Confidence 3666777777777777767788888999999999999999888776654332333332 233444343 23555
Q ss_pred --hHHHHHHHHHHHHhhh
Q psy8267 180 --GQVFILNMLTRYARTQ 195 (645)
Q Consensus 180 --~Qv~iL~lL~~y~r~~ 195 (645)
.+-++++++......+
T Consensus 103 ~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 103 TPVKEKILELLQEWAEAF 120 (140)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 7889999999988653
No 186
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=61.92 E-value=21 Score=33.19 Aligned_cols=58 Identities=12% Similarity=0.255 Sum_probs=45.9
Q ss_pred ceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEEecCCC
Q psy8267 538 MISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDST 598 (645)
Q Consensus 538 ~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 598 (645)
-..+.+.+.|.++..+.|+++.+- +. +++++-+-|..-+|.|++....+..+.+...+
T Consensus 70 DIvLDvllvNqT~~tLqNl~vEla--t~-gdLklve~p~~~tL~P~~~~~i~~~iKVsSte 127 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELA--TL-GDLKLVERPQPITLAPHGFARIKATIKVSSTE 127 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEE--ec-CCcEEccCCCceeeCCCcEEEEEEEEEEEecc
Confidence 357888999999999999999887 54 37999977765599999998876666654433
No 187
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=59.80 E-value=23 Score=36.07 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=19.4
Q ss_pred hcCCCChHHHHHHHHHHHHHhhc
Q psy8267 98 SSLDMSPYVRKTAAHAIPKLYSL 120 (645)
Q Consensus 98 ~l~d~~pyVRK~Aalal~kl~~~ 120 (645)
++.|.+|-|.|.|+.|...+|+.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~ 23 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPL 23 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999863
No 188
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=59.63 E-value=18 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=20.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHH
Q psy8267 91 VMLAIKDSSLDMSPYVRKTAAHAIPKL 117 (645)
Q Consensus 91 l~~~I~~~l~d~~pyVRK~Aalal~kl 117 (645)
.++.+.+++.++++-||+.|+-|+..+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456667778888888888888887765
No 189
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=59.27 E-value=17 Score=39.54 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=39.8
Q ss_pred HHHHHHHHHcC---CCCHHHHHHHHHHHhCCC---ccccHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy8267 55 LSISTFQRALK---DPNQLIRASALRVLSSIR---VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAI 114 (645)
Q Consensus 55 L~iNsl~kDL~---~~N~~iralALr~ls~I~---~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal 114 (645)
.-.+.+.-||+ +..|..||-|++++...| .++....+++.+.+++.+++.-|+--||+|+
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33444455555 566888888888886544 4566666778888888888888888888775
No 190
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=59.12 E-value=89 Score=28.64 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHH------HHHHHHHhcC--CCchh
Q psy8267 109 TAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKS------YRKLCNLLVD--VDEWG 180 (645)
Q Consensus 109 ~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~------~~kL~~~L~~--~~~W~ 180 (645)
...+.++-+.+.+++...+.+..|.+-|.+++|-|+.-|+.++..+......-+|.. ...|.+.+.. ..+..
T Consensus 19 ~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~V 98 (133)
T smart00288 19 ELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLV 98 (133)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHH
Confidence 345556666666666666777888888999999999999888776654322223322 2234444433 34557
Q ss_pred HHHHHHHHHHHHhhh
Q psy8267 181 QVFILNMLTRYARTQ 195 (645)
Q Consensus 181 Qv~iL~lL~~y~r~~ 195 (645)
+-+++.++......+
T Consensus 99 k~kil~li~~W~~~f 113 (133)
T smart00288 99 KKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999999887654
No 191
>KOG2038|consensus
Probab=58.67 E-value=3.8e+02 Score=31.94 Aligned_cols=61 Identities=25% Similarity=0.317 Sum_probs=33.8
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 95 IKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 95 I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
+..+..|+=+.||++|+-+++-+..--||+-..+.-.+..-|.|++.-+.+.|..++..+.
T Consensus 309 Le~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~ 369 (988)
T KOG2038|consen 309 LEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLL 369 (988)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHH
Confidence 3444455555666666666666655556555555555555555655555555555555443
No 192
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=58.31 E-value=58 Score=30.34 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=49.2
Q ss_pred HHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC------------CccccHHHHHHHHHhhcC-CCChHHH
Q psy8267 41 YLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI------------RVPMIIPIVMLAIKDSSL-DMSPYVR 107 (645)
Q Consensus 41 ~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I------------~~~ei~~~l~~~I~~~l~-d~~pyVR 107 (645)
-++-..+.+++-.--++.+++|-|+++||.+.-+||..+-.+ ...++ +..+.+++. ..++-||
T Consensus 27 eicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~f----l~~l~~l~~~~~~~~Vk 102 (142)
T cd03569 27 EICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREF----MDELKDLIKTTKNEEVR 102 (142)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHH----HHHHHHHHcccCCHHHH
Confidence 344444444445667888999999999999999999877432 33333 344445554 5688899
Q ss_pred HHHHHHHHHHh
Q psy8267 108 KTAAHAIPKLY 118 (645)
Q Consensus 108 K~Aalal~kl~ 118 (645)
++++..+..-.
T Consensus 103 ~kil~li~~W~ 113 (142)
T cd03569 103 QKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHH
Confidence 88877665443
No 193
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=58.30 E-value=1.1e+02 Score=28.37 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHH------HHHHHHHhcC------C
Q psy8267 109 TAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKS------YRKLCNLLVD------V 176 (645)
Q Consensus 109 ~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~------~~kL~~~L~~------~ 176 (645)
.+.+.++-+...+|+...+.+..|.+-|.++|+-|+.-|+.++..+......-+|.. ...|++++.. .
T Consensus 20 ~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~ 99 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRT 99 (139)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCC
Confidence 456666666667777666677888889999999999999988876654322223322 2345555532 4
Q ss_pred CchhHHHHHHHHHHHHhhh
Q psy8267 177 DEWGQVFILNMLTRYARTQ 195 (645)
Q Consensus 177 ~~W~Qv~iL~lL~~y~r~~ 195 (645)
++=.+-++|.++......+
T Consensus 100 ~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 100 SEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 5667889999999988653
No 194
>KOG2973|consensus
Probab=58.28 E-value=63 Score=34.10 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhhcCchh-----HHHHHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 94 AIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ-----KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 94 ~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~-----~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
.+.+.+.+++|-|||.|+.-+.-+--- +-. -...++.+.+|+.|.++ ..-|+.++..+..+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 455677777777877777554433221 111 03345666777777776 33455555555543
No 195
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.99 E-value=22 Score=32.13 Aligned_cols=51 Identities=22% Similarity=0.119 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHhCC-----CccccHHHH--HHHHHhhcCCCChHHHHHHHHHHHHHh
Q psy8267 68 NQLIRASALRVLSSI-----RVPMIIPIV--MLAIKDSSLDMSPYVRKTAAHAIPKLY 118 (645)
Q Consensus 68 N~~iralALr~ls~I-----~~~ei~~~l--~~~I~~~l~d~~pyVRK~Aalal~kl~ 118 (645)
++..-|.|+.-||.+ .+..+++.+ -..|.+++.|++|-||+.|..|+.|+.
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 455555555555543 122222221 234445555555555555555555543
No 196
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=57.64 E-value=3e+02 Score=30.39 Aligned_cols=217 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCccc----cHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhc-----CC
Q psy8267 69 QLIRASALRVLSSIRVPM----IIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQ-----DK 139 (645)
Q Consensus 69 ~~iralALr~ls~I~~~e----i~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~-----D~ 139 (645)
..+=..-++++.+-.... +-...+..+..++.+++|.-|...-..+.++|.+.++....+...+.+.+. +.
T Consensus 108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcc
Q ss_pred ChhHHHHHHHHHHHHC------------------------hhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhh
Q psy8267 140 TTLVVGSAVMAFEEVC------------------------PERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQ 195 (645)
Q Consensus 140 ~~~V~~sav~~l~ei~------------------------~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~ 195 (645)
.+..++-.+..+..+. +.....+|+.+.+.+....+-||=.-..+++.+-+|-
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W--- 264 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW--- 264 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS---
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC---
Q ss_pred cCCCCCC-----------CCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHH
Q psy8267 196 FTDPNLN-----------ENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVV 264 (645)
Q Consensus 196 ~~~P~~~-----------~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv 264 (645)
|... +. .+.......| ..-...+.+.+...++|.|.-|.
T Consensus 265 ---P~t~s~Kev~FL~el~~-------il~~~~~~~f--------------------~~i~~~lf~~la~ci~S~h~qVA 314 (409)
T PF01603_consen 265 ---PKTNSQKEVLFLNELEE-------ILEVLPPEEF--------------------QKIMVPLFKRLAKCISSPHFQVA 314 (409)
T ss_dssp ----SS-HHHHHHHHHHHHH-------HHTT--HHHH--------------------HHHHHHHHHHHHHHHTSSSHHHH
T ss_pred ---CCCCchhHHHHHHHHHH-------HHHhcCHHHH--------------------HHHHHHHHHHHHHHhCCCCHHHH
Q ss_pred HHHHHH--------HHhcCChHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHhhcccchhh
Q psy8267 265 MAVAQL--------FHHLAPRREVAIIAKALVRLLRSS--REVQTVVLTTIASLAVKRRALFVP 318 (645)
Q Consensus 265 ~ea~~~--------i~~l~~~~~~~~~~~~L~~lL~s~--~niryv~L~~l~~l~~~~p~~~~~ 318 (645)
-.|..+ ++.-.....+..+.++|-+...++ ..+|-.+...+..+...+|++|+.
T Consensus 315 ErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 315 ERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
No 197
>KOG2973|consensus
Probab=57.61 E-value=80 Score=33.38 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=64.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhCCCcc------ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh----HHH
Q psy8267 58 STFQRALKDPNQLIRASALRVLSSIRVP------MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ----KEE 127 (645)
Q Consensus 58 Nsl~kDL~~~N~~iralALr~ls~I~~~------ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~----~~~ 127 (645)
+.+.+-+.++||-+|..|.+-+.++-.. .--+..+.++.+++.++.| -.-||.|+.++.+ +++. ...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH
Confidence 3566778899999999999888776544 1124677888999999988 6778888888875 3333 233
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 128 ~~~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
+...+...+-|......-...+++..+..+
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 555555555555433334455556555543
No 198
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=56.81 E-value=1.1e+02 Score=31.16 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=36.4
Q ss_pred hhcCCChhHHHHHHHHHHHHChh-------------hhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q psy8267 135 LLQDKTTLVVGSAVMAFEEVCPE-------------RIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYART 194 (645)
Q Consensus 135 lL~D~~~~V~~sav~~l~ei~~~-------------~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~ 194 (645)
||+|+|+.|+-.++.++..+.|. -|+.+...=.++++.+...+|=..+..++++.+....
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 67899999988887776655442 2322222223455555555554577888888887654
No 199
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=56.57 E-value=1.5e+02 Score=30.70 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=67.8
Q ss_pred HHHHHHHHccCcCCHHHHHHHHHHhhcc---ccHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhccCChhhHHHHHH
Q psy8267 336 LKLELLTTLASETSIASILREFQTYISS---VDKAFVAATVQAIGKCAANI-AQVTDTCLTGLVSLLSYSDEAVVAESVV 411 (645)
Q Consensus 336 ~kLdlL~~L~~~~Nv~~Il~EL~~yl~~---~d~~~~~~~i~~I~~la~k~-~~~~~~~v~~ll~LL~~~~~~v~~e~v~ 411 (645)
..-+.|..+|...+...+-+=+..|.+. ...+|.+.++..|. +.| |.....++..++.+|+++...+...+..
T Consensus 134 ~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~---~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~ 210 (262)
T PF14225_consen 134 EIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLR---EAFFPDHEFQILTFLLGLLENGPPWLRRKTLQ 210 (262)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HHhCchhHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 3446677777765555555444455443 34578888877774 444 7777889999999999988888888888
Q ss_pred HHHHHhhcCCc---chHHHHHHHHHhhccCChHHH
Q psy8267 412 VIKNLLQTQPE---AYTDIIRHMVRLSDSITVPTA 443 (645)
Q Consensus 412 ~i~~il~~~p~---~~~~~i~~L~~~l~~i~~~~a 443 (645)
+++-+++.-+- .-...+.-+.++++...-++|
T Consensus 211 iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~eA 245 (262)
T PF14225_consen 211 ILKVLLPHVDMRSPHGADLISPLLRLLQTDLWMEA 245 (262)
T ss_pred HHHHHhccccCCCCcchHHHHHHHHHhCCccHHHH
Confidence 88888864221 122344555555554443333
No 200
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=56.54 E-value=1.7e+02 Score=33.86 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=80.5
Q ss_pred cCcCCHHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhH--------------HHH
Q psy8267 345 ASETSIASILREFQTYIS-SVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVV--------------AES 409 (645)
Q Consensus 345 ~~~~Nv~~Il~EL~~yl~-~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~--------------~e~ 409 (645)
-+.+ .+.+|+.++.+-= ..+.++++.-++=++.|+...+.....|++.+++.+........ +-+
T Consensus 67 Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~v 145 (563)
T PF05327_consen 67 LDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERV 145 (563)
T ss_dssp G-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------H
T ss_pred hhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHH
Confidence 3444 7888888887621 36889999999999999999999999999999998875443222 224
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHhhccCChHHH-----HHHHHHHHhcccccCCCchHHHHHHHHHhhcCCc
Q psy8267 410 VVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTA-----RAAILWLLGEYSHLVPALGPDVLRKAAITFVNEE 477 (645)
Q Consensus 410 v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~a-----k~~~iwilGEy~~~i~~~~~diLr~l~~~f~~e~ 477 (645)
-..++.|++..|.....+...+.+.+.....+.. ...++|+. +|+ |.+..++++.++++...-+
T Consensus 146 H~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~-~Y~---P~L~~~Il~lIi~rLi~iD 214 (563)
T PF05327_consen 146 HDALQKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLT-EYC---PELRSDILSLIIERLIKID 214 (563)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHH-CC----GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHH-cch---HHHHHHHHHHHHHHHHHHh
Confidence 5667888888898887777777777765443321 22344544 555 4456666666665554433
No 201
>KOG0946|consensus
Probab=56.28 E-value=1.3e+02 Score=35.59 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCh--hHHHHHHHHHHHHHhhcccchh----hhhceEEEcCCCChHHHHHHHHHHHHccCcC-------CH
Q psy8267 284 AKALVRLLRSSR--EVQTVVLTTIASLAVKRRALFV----PYLKSFYVRSSDPTHVKTLKLELLTTLASET-------SI 350 (645)
Q Consensus 284 ~~~L~~lL~s~~--niryv~L~~l~~l~~~~p~~~~----~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~-------Nv 350 (645)
+..|+.-+.+.+ +=|--|++.|..++.++...+. +++-...-++-+|+.+-..+||.++.+...+ |-
T Consensus 24 I~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds 103 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS 103 (970)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc
Q ss_pred H-----------------HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHH-------HHHhhccCChhhH
Q psy8267 351 A-----------------SILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTG-------LVSLLSYSDEAVV 406 (645)
Q Consensus 351 ~-----------------~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~-------ll~LL~~~~~~v~ 406 (645)
. .-+.=|+.|+..-|..+|.-+|+-|..+-..-|.....|+-+ ++++|.+.-+-+.
T Consensus 104 ~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IR 183 (970)
T KOG0946|consen 104 TQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIR 183 (970)
T ss_pred hhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhc
Q ss_pred HHHHHHHHHHhhcCCcch-----HHHHHHHHHhhcc
Q psy8267 407 AESVVVIKNLLQTQPEAY-----TDIIRHMVRLSDS 437 (645)
Q Consensus 407 ~e~v~~i~~il~~~p~~~-----~~~i~~L~~~l~~ 437 (645)
+|++..+..+++-+|..+ +-+-.+|+.+++.
T Consensus 184 Ne~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 184 NEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
No 202
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=55.75 E-value=1.6e+02 Score=33.84 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=37.0
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhc----CchhHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy8267 85 PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL----DPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEE 153 (645)
Q Consensus 85 ~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~----~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~e 153 (645)
.++++..+..+.+.+..++--|||..+--+..+..- |.++...+.+.+.+-+-|+.+.|..-|+.+++.
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~ 158 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCY 158 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 345555555566666666666666655544444331 222334455555555556666666666555543
No 203
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=55.53 E-value=3.4e+02 Score=35.12 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=68.9
Q ss_pred ccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh-HHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhh
Q psy8267 84 VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ-KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMI 162 (645)
Q Consensus 84 ~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~-~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li 162 (645)
..+..+.++.-...++.++.+-|+.-+++.-..+|...... ..+.+..|...+.+.+..=+.+|+.++.+++..+++.+
T Consensus 429 L~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l 508 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSEL 508 (1426)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHH
Confidence 34566666666677788999999999999888888765432 24455555555555555555788999999987666555
Q ss_pred HHH---HHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 163 HKS---YRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 163 ~~~---~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
.++ +..+++.+...++=---++.++|...+-
T Consensus 509 ~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 509 QPFATFLKGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp HHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 543 3344444444444333456777776653
No 204
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=55.48 E-value=40 Score=32.52 Aligned_cols=41 Identities=32% Similarity=0.413 Sum_probs=30.2
Q ss_pred ccCCCCceEEEEeEEecCCCCCCccEEeecccCCCCCccceEeeCCc
Q psy8267 579 SIDPGLAVEVSLGLNLNDSTQPLSPRLVWGVEGEDGLSAPLKLSAPV 625 (645)
Q Consensus 579 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~pv 625 (645)
+|.||+++.+++..-...+. |.+|++.++ |..+.+.-..|-
T Consensus 127 slapG~s~~~~~~YyLPiSg-PsN~tv~~~-----g~~Yal~~d~p~ 167 (180)
T PF06483_consen 127 SLAPGASVELDMVYYLPISG-PSNFTVNIG-----GKTYALKFDYPR 167 (180)
T ss_pred ccCCCCEEEEeEEEEeccCC-CceEEEEEC-----CEEEEEecccCC
Confidence 89999999977755555554 889999863 555677766665
No 205
>KOG1943|consensus
Probab=55.14 E-value=5e+02 Score=32.18 Aligned_cols=226 Identities=17% Similarity=0.163 Sum_probs=118.6
Q ss_pred chhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhh-hhhhHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHhhhcC
Q psy8267 122 PEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER-IDMIHKSYRKLCNLL---VDVDEWGQVFILNMLTRYARTQFT 197 (645)
Q Consensus 122 p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~-~~li~~~~~kL~~~L---~~~~~W~Qv~iL~lL~~y~r~~~~ 197 (645)
|+.+|..++.+.+.|+|.|..|..+|.-.+..+...- +++.-..+...++.+ .+...|-- -+=.|...+++.+.
T Consensus 336 ~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHg--acLaLAELA~rGlL 413 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHG--ACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHH--HHHHHHHHHhcCCc
Confidence 4566788888999999999999999999888776322 333333334444433 23567862 23345555655444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhh---hhhhc-CCChHHHHHHHHHHHh
Q psy8267 198 DPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNA---KPLLQ-SRNAAVVMAVAQLFHH 273 (645)
Q Consensus 198 ~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~---~~ll~-s~n~aVv~ea~~~i~~ 273 (645)
-|+.- +..+-.++..+ ...-+ +.+..|.=+|+-..+.
T Consensus 414 lps~l---------------------------------------~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WA 454 (1133)
T KOG1943|consen 414 LPSLL---------------------------------------EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWA 454 (1133)
T ss_pred chHHH---------------------------------------HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHH
Confidence 44221 00112222211 11111 2233343333333333
Q ss_pred c---CChHHHH----HHHHHHHH--HhCCChhHHHHHHHHHHHHHhhcccc-----hhhhhceEEEcCCCChHHHHH---
Q psy8267 274 L---APRREVA----IIAKALVR--LLRSSREVQTVVLTTIASLAVKRRAL-----FVPYLKSFYVRSSDPTHVKTL--- 336 (645)
Q Consensus 274 l---~~~~~~~----~~~~~L~~--lL~s~~niryv~L~~l~~l~~~~p~~-----~~~~~~~f~~l~~d~~~Ir~~--- 336 (645)
+ ..+++++ .++..|+. +...+-|.|+.+--++...+-+.++. +..+.+.| ++..+
T Consensus 455 f~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~--------sV~~rsNc 526 (1133)
T KOG1943|consen 455 FARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYF--------SVTNRSNC 526 (1133)
T ss_pred HHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchh--------hhhhhhhH
Confidence 2 2223333 34433322 33467799999988888887765543 12222222 11111
Q ss_pred HHHHHHHccC-cCCHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHhhccccHH-HHHHHHHH
Q psy8267 337 KLELLTTLAS-ETSIASILREFQTY-ISSVDKAFVAATVQAIGKCAANIAQVTD-TCLTGLVS 396 (645)
Q Consensus 337 kLdlL~~L~~-~~Nv~~Il~EL~~y-l~~~d~~~~~~~i~~I~~la~k~~~~~~-~~v~~ll~ 396 (645)
-+++-..++- +.=.+.++++|.+- +.+=|..+|+.+..++.+++...|+... .++.-+++
T Consensus 527 y~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld 589 (1133)
T KOG1943|consen 527 YLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLD 589 (1133)
T ss_pred HHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhh
Confidence 1222222222 22245566666654 5555888888888899988888775543 44443433
No 206
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=55.01 E-value=1.7e+02 Score=31.80 Aligned_cols=128 Identities=12% Similarity=0.089 Sum_probs=72.2
Q ss_pred ccCCchhHHHHHHHHHHhccc---Cch------HHHHHHHHHHHHcCC-------CCHHHHHHHHHHHhCCC--------
Q psy8267 28 VSKNIEVKKLVYVYLARYAEE---QQD------LALLSISTFQRALKD-------PNQLIRASALRVLSSIR-------- 83 (645)
Q Consensus 28 ~s~~~~~KkL~Yl~l~~~~~~---~~d------l~lL~iNsl~kDL~~-------~N~~iralALr~ls~I~-------- 83 (645)
++.+.+.|.=+|+.+...... .|| -+=+.+..+++|+.+ .+..+..-|||++|.+-
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 456667777788887766542 222 144677889999987 46677789999998742
Q ss_pred -ccccHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhh-----cCchhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHC
Q psy8267 84 -VPMIIPIVMLAIKDSSLDM-SPYVRKTAAHAIPKLYS-----LDPEQKEELVLVIEKLLQ-DKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 84 -~~ei~~~l~~~I~~~l~d~-~pyVRK~Aalal~kl~~-----~~p~~~~~~~~~l~~lL~-D~~~~V~~sav~~l~ei~ 155 (645)
..+...-++......+.++ .|=.--++++.+++.-+ ...+..+.+...+..+-+ =+...++.-++.++..+.
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll 162 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL 162 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 2233332333333444444 33233333333333322 234555666666555543 245556666777776665
No 207
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=54.80 E-value=14 Score=23.86 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCCccccHHHHHHHH
Q psy8267 71 IRASALRVLSSIRVPMIIPIVMLAI 95 (645)
Q Consensus 71 iralALr~ls~I~~~ei~~~l~~~I 95 (645)
+|..|.++||.++.++-++.+...+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 4666777777777766665554443
No 208
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=54.69 E-value=46 Score=28.52 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=45.6
Q ss_pred CCCChHHHHHHHHHHHHHhhcC----chhHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHChhhh
Q psy8267 100 LDMSPYVRKTAAHAIPKLYSLD----PEQKEELVLVIEKLLQDK--TTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 100 ~d~~pyVRK~Aalal~kl~~~~----p~~~~~~~~~l~~lL~D~--~~~V~~sav~~l~ei~~~~~ 159 (645)
.+.+..+|..||-.+..+.+.. |.+.+.....+.+.+.|+ +......|+..+.++.++-.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~v 81 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAV 81 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3558899999999999998864 555667777777777764 45677789999998877655
No 209
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=53.77 E-value=69 Score=30.26 Aligned_cols=92 Identities=23% Similarity=0.149 Sum_probs=58.8
Q ss_pred CCChHHHHHHHHHHHHHhhcCchhH-HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhH------HHHHHHHHHh
Q psy8267 101 DMSPYVRKTAAHAIPKLYSLDPEQK-EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIH------KSYRKLCNLL 173 (645)
Q Consensus 101 d~~pyVRK~Aalal~kl~~~~p~~~-~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~------~~~~kL~~~L 173 (645)
...+-||-.|.+++.|+++..++.. +.+.+.+..++.+.+..-...++.++..+.|-.+++-. +....+....
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 4577899999999999986666654 45666777777664444444566666666654443211 1223344444
Q ss_pred c--CCCchhHHHHHHHHHHHH
Q psy8267 174 V--DVDEWGQVFILNMLTRYA 192 (645)
Q Consensus 174 ~--~~~~W~Qv~iL~lL~~y~ 192 (645)
. ..++=.|..++++|..-+
T Consensus 96 ~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHT
T ss_pred hcccCCHHHHHHHHHHHHHHH
Confidence 4 457777899999998655
No 210
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=53.61 E-value=31 Score=32.65 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHhCCC---ccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH------HHHHHHHHHhhc
Q psy8267 67 PNQLIRASALRVLSSIR---VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK------EELVLVIEKLLQ 137 (645)
Q Consensus 67 ~N~~iralALr~ls~I~---~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~------~~~~~~l~~lL~ 137 (645)
..+.+|+.|+=+++.+- ..+.-+.+...+...+.+...--...|+-++.-+|...|+.- +++.+.+..++.
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 34455555555555441 122233344455555544422244467777788899999863 678888899988
Q ss_pred --CCChhHHHHHHHHHHHHChhh--hhhhHHHHHHHHHHhcC
Q psy8267 138 --DKTTLVVGSAVMAFEEVCPER--IDMIHKSYRKLCNLLVD 175 (645)
Q Consensus 138 --D~~~~V~~sav~~l~ei~~~~--~~li~~~~~kL~~~L~~ 175 (645)
.++..+..+++-++..-|-+. -..+.+++..+++.+.+
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 788888889999999888643 36777777776666653
No 211
>KOG1967|consensus
Probab=53.45 E-value=37 Score=40.59 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=61.6
Q ss_pred CCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHc----CCCC---HHHHHHHHHHHhCCCc
Q psy8267 12 KGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRAL----KDPN---QLIRASALRVLSSIRV 84 (645)
Q Consensus 12 ~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL----~~~N---~~iralALr~ls~I~~ 84 (645)
.|-++..++|-.++.++-+|...|-=.-=.+.....+.+-+.-.=..|+..-+ .|+| ..+|-.||++|..+-.
T Consensus 903 llp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 903 LLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred hccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 34566677777777777666665432222222222222222111122222211 2222 5788888888877632
Q ss_pred -------cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q psy8267 85 -------PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLY 118 (645)
Q Consensus 85 -------~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~ 118 (645)
...-+.++.++.+++.|+.-.|||-|+-|=.+-|
T Consensus 983 ~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 983 RLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred cCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 3455678888888888888888888887755444
No 212
>KOG1820|consensus
Probab=53.20 E-value=2.5e+02 Score=33.95 Aligned_cols=127 Identities=19% Similarity=0.153 Sum_probs=96.0
Q ss_pred cCCchhHHHHHHHHHHhcccC----chHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCCh
Q psy8267 29 SKNIEVKKLVYVYLARYAEEQ----QDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSP 104 (645)
Q Consensus 29 s~~~~~KkL~Yl~l~~~~~~~----~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~p 104 (645)
-.|+.+..+.-.++..++..- ...+..+.|.|..-+.+.....|-.++.++=.+...--...+.+.|...+.+.+|
T Consensus 306 DaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp 385 (815)
T KOG1820|consen 306 DANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNP 385 (815)
T ss_pred CcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCh
Confidence 345555555555555555433 3457788999999999999999987777766555555566788888999999999
Q ss_pred HHHHHHHHHHHHHhhcCch------hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 105 YVRKTAAHAIPKLYSLDPE------QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 105 yVRK~Aalal~kl~~~~p~------~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
-+|--....+-+.++..+. .+..+.+.+.+..+|.+.-|..+|..++..+.
T Consensus 386 ~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 386 QIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 9999988888888876552 24678888889999999999998877776554
No 213
>KOG2025|consensus
Probab=52.30 E-value=4.7e+02 Score=31.01 Aligned_cols=70 Identities=16% Similarity=0.113 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh----cCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 86 MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS----LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~----~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
+++......+.+....++--||+..+.-+.++.. .+.+....+.+.+..-|.|+.|.|..-|+.++..+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ 154 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 4566666666677777777777777666666654 222233555555666666777777777777766554
No 214
>KOG2759|consensus
Probab=50.90 E-value=18 Score=39.43 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhCC-----CccccHHHH--HHHHHhhcCCCChHHHHHHHHHHHHHh
Q psy8267 68 NQLIRASALRVLSSI-----RVPMIIPIV--MLAIKDSSLDMSPYVRKTAAHAIPKLY 118 (645)
Q Consensus 68 N~~iralALr~ls~I-----~~~ei~~~l--~~~I~~~l~d~~pyVRK~Aalal~kl~ 118 (645)
+|.+-|.|.+-+|.. ++..+++.. -..|.++++|++|-||..|..|+.++.
T Consensus 380 Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 380 DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 466666666666653 222222222 235666777777777777777776664
No 215
>KOG1517|consensus
Probab=50.76 E-value=4.2e+02 Score=32.81 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=96.5
Q ss_pred HHHHHHHHhC-CChhHHHHHHHHHHHHHhhccc----chhhh-hceEE-EcCCCChHHHHHHHHHHHHccCcCCHHHHHH
Q psy8267 283 IAKALVRLLR-SSREVQTVVLTTIASLAVKRRA----LFVPY-LKSFY-VRSSDPTHVKTLKLELLTTLASETSIASILR 355 (645)
Q Consensus 283 ~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~----~~~~~-~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~ 355 (645)
+..-.++||. +-+|+|-+-.-.=++|.+..|+ ++... ++.|. ++.+.
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~-------------------------- 566 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS-------------------------- 566 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc--------------------------
Confidence 5567788996 5578998766666888887774 55542 33443 34330
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHH-----HHHHHhhccC-ChhhHHHHHHHHHHHhhcCCcc-----h
Q psy8267 356 EFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCL-----TGLVSLLSYS-DEAVVAESVVVIKNLLQTQPEA-----Y 424 (645)
Q Consensus 356 EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v-----~~ll~LL~~~-~~~v~~e~v~~i~~il~~~p~~-----~ 424 (645)
...+++-|..++=-++.+...|+.-.+.|+ .+.+..|... ...+.+-+...+-.|-++|++- +
T Consensus 567 ------~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r 640 (1387)
T KOG1517|consen 567 ------QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR 640 (1387)
T ss_pred ------CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc
Confidence 111123333333333444444443333332 2334444442 3445555666666777777653 3
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHhcccccC----CC----c------------hHHHHH----HHHHhhcCCchHH
Q psy8267 425 TDIIRHMVRLSDSITVPTARAAILWLLGEYSHLV----PA----L------------GPDVLR----KAAITFVNEEDIV 480 (645)
Q Consensus 425 ~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i----~~----~------------~~diLr----~l~~~f~~e~~~v 480 (645)
..+-.+|...+.+ ..|++|+++++.+|-|-.-. ++ + ..++.. .++....+-++.|
T Consensus 641 ~~AhekL~~~LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplv 719 (1387)
T KOG1517|consen 641 DNAHEKLILLLSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLV 719 (1387)
T ss_pred ccHHHHHHHHhcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHH
Confidence 4556667666654 46889999999999875431 10 0 122222 3455566677778
Q ss_pred HHHHHHhhh
Q psy8267 481 KLQVLNLAP 489 (645)
Q Consensus 481 k~~iL~~~~ 489 (645)
|-++.-++.
T Consensus 720 r~ev~v~ls 728 (1387)
T KOG1517|consen 720 RTEVVVALS 728 (1387)
T ss_pred HHHHHHHHH
Confidence 877665555
No 216
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=50.66 E-value=81 Score=30.01 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=55.6
Q ss_pred HHHHHHHHcc--CcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhc---cCChhhHHHHH
Q psy8267 336 LKLELLTTLA--SETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLS---YSDEAVVAESV 410 (645)
Q Consensus 336 ~kLdlL~~L~--~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~---~~~~~v~~e~v 410 (645)
...++|.++. .+.....|++++.+.+-....+-...-++.++.+..++|-....|.+.+-+++. .-...++...+
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll 116 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLL 116 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555443 344455666666665543222222233556666666666554444444444333 22334455555
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHH
Q psy8267 411 VVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAA 446 (645)
Q Consensus 411 ~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~ 446 (645)
..+.=+++..++.++..+..|-+.+-+ .+.++|.+
T Consensus 117 ~Al~PLi~~s~~lrd~lilvLRKamf~-r~~~~R~~ 151 (158)
T PF14676_consen 117 RALLPLIKFSPSLRDSLILVLRKAMFS-RELDARQM 151 (158)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTT--SSHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHcc-ccHHHHHH
Confidence 666667777777888877777777754 34455544
No 217
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=50.23 E-value=30 Score=31.50 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh
Q psy8267 86 MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ 124 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~ 124 (645)
.-...++..+.+-|+|++|+||.||.-.|-.+.+..++.
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence 334556666677777777777777777777766655543
No 218
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=49.70 E-value=1.1e+02 Score=32.53 Aligned_cols=68 Identities=19% Similarity=0.125 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCC---CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh
Q psy8267 52 LALLSISTFQRAL-KDPNQLIRASALRVLSSI---RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS 119 (645)
Q Consensus 52 l~lL~iNsl~kDL-~~~N~~iralALr~ls~I---~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~ 119 (645)
++--+++.+-.=+ ++.||...+.++.+++.= ...++-+.+...+++++.|+.+-|||.-..++..++.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 3333444443333 347787777777777642 1578889999999999999999999999999999886
No 219
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=49.30 E-value=3.6e+02 Score=28.77 Aligned_cols=113 Identities=20% Similarity=0.185 Sum_probs=62.2
Q ss_pred HHhCCChhHHHHHHHHHHHHHhhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccC-cCCHHHHHHHHHHhhccccH
Q psy8267 289 RLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLAS-ETSIASILREFQTYISSVDK 366 (645)
Q Consensus 289 ~lL~s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~-~~Nv~~Il~EL~~yl~~~d~ 366 (645)
..++++...+-.+......|. ++|.+.++ .+.+....+..-+|.+|..|+. .. ....+|+..+..-.-.
T Consensus 34 ~~ls~~~~~~~~g~~l~~~iL-------~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~--g~~a~~v~~~fd~~~~ 104 (330)
T PF11707_consen 34 KKLSSDLSFQSYGLELIRSIL-------QNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDG--GALAREVLRSFDFSLK 104 (330)
T ss_pred HHhccchhHHHHHHHHHHHHH-------HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCC--HHHHHHHHHhcCCchh
Confidence 334555556655666555444 45566666 5555557788899999999987 33 3455666555422111
Q ss_pred HHHHHHHHHHHHHHhh--c----cccHHHHHHHHHHhhccCChhhHHHHH
Q psy8267 367 AFVAATVQAIGKCAAN--I----AQVTDTCLTGLVSLLSYSDEAVVAESV 410 (645)
Q Consensus 367 ~~~~~~i~~I~~la~k--~----~~~~~~~v~~ll~LL~~~~~~v~~e~v 410 (645)
.+.+-+...-...... . +..-..++++++.+++.++..+..+.+
T Consensus 105 ~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL 154 (330)
T PF11707_consen 105 SLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLL 154 (330)
T ss_pred hHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 1111111000000000 0 144567899999999988766555543
No 220
>KOG4653|consensus
Probab=49.13 E-value=2.2e+02 Score=34.29 Aligned_cols=67 Identities=22% Similarity=0.238 Sum_probs=43.6
Q ss_pred cCCCCHHHHHHHHHHHhCCC------ccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-HHHHH
Q psy8267 64 LKDPNQLIRASALRVLSSIR------VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-EELVL 130 (645)
Q Consensus 64 L~~~N~~iralALr~ls~I~------~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-~~~~~ 130 (645)
+.|+-+.+|+-||+.|..+- ...+-+-+.......+.|.++||-=.|+-++..+...+|+-+ +.+.+
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e 809 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSE 809 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHH
Confidence 34666777777777777642 234445566666777777777777777777777777777643 54444
No 221
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=48.49 E-value=62 Score=38.18 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=62.4
Q ss_pred HHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHh-hcCCChhHHHHH
Q psy8267 74 SALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKL-LQDKTTLVVGSA 147 (645)
Q Consensus 74 lALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~l-L~D~~~~V~~sa 147 (645)
.|+..|++++.|-= ..++..+-.++.. |--|..|..-+..+.+..|..+ ..+++-|.++ ..|.++.|+.+|
T Consensus 55 ~~~~il~~~~~P~~-K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~a 131 (668)
T PF04388_consen 55 RALEILVGVQEPHD-KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSA 131 (668)
T ss_pred HHHHHHHhcCCccH-HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHH
Confidence 57778888887721 2344445555554 4577788888888999888754 2455555554 469999999999
Q ss_pred HHHHHHHChhhhhhhHHHHHHHHH
Q psy8267 148 VMAFEEVCPERIDMIHKSYRKLCN 171 (645)
Q Consensus 148 v~~l~ei~~~~~~li~~~~~kL~~ 171 (645)
+.++.-+.|.-+..+.++...|..
T Consensus 132 l~~LimlLP~ip~~l~~~L~~Lf~ 155 (668)
T PF04388_consen 132 LLVLIMLLPHIPSSLGPHLPDLFN 155 (668)
T ss_pred HHHHHHHhccccchhhHHHHHHHH
Confidence 999998887654333333333333
No 222
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=47.97 E-value=2.3e+02 Score=26.26 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=48.9
Q ss_pred HHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHhhcccchhh
Q psy8267 247 LLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR--SSREVQTVVLTTIASLAVKRRALFVP 318 (645)
Q Consensus 247 ~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~--s~~niryv~L~~l~~l~~~~p~~~~~ 318 (645)
.+-+++.+.+...+-+..++.+..+-. ....-+.++.+|.+-|. .++++++.+|..+..++......|..
T Consensus 5 ~IekATse~l~~~dw~~ileicD~In~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ 76 (141)
T cd03565 5 LIEKATDGSLQSEDWGLNMEICDIINE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHV 76 (141)
T ss_pred HHHHHcCcCCCCcCHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHH
Confidence 445566777777788888888887753 22234567777777664 46889999999988888766655553
No 223
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=47.83 E-value=1.2e+02 Score=25.91 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=45.6
Q ss_pred CCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEEecCCCCC--CccEEeecccCC
Q psy8267 535 SPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQP--LSPRLVWGVEGE 612 (645)
Q Consensus 535 ~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 612 (645)
-|.--...++++|.+..+. .|++.... .....+++. +.-..|.||.+.+..+ .|.+.... ..-.++ + ..
T Consensus 18 ~g~~~~~~v~l~N~s~~p~-~f~v~~~~-~~~~~~~v~--~~~g~l~PG~~~~~~V--~~~~~~~~g~~~~~l~--i-~~ 88 (102)
T PF14874_consen 18 VGQTYSRTVTLTNTSSIPA-RFRVRQPE-SLSSFFSVE--PPSGFLAPGESVELEV--TFSPTKPLGDYEGSLV--I-TT 88 (102)
T ss_pred cCCEEEEEEEEEECCCCCE-EEEEEeCC-cCCCCEEEE--CCCCEECCCCEEEEEE--EEEeCCCCceEEEEEE--E-EE
Confidence 3444567888999998874 66665541 122345544 2223899999877444 55532222 233333 2 22
Q ss_pred CCCccceEeeC
Q psy8267 613 DGLSAPLKLSA 623 (645)
Q Consensus 613 ~~~~~~~~l~~ 623 (645)
+|+.+.+.++.
T Consensus 89 e~~~~~i~v~a 99 (102)
T PF14874_consen 89 EGGSFEIPVKA 99 (102)
T ss_pred CCeEEEEEEEE
Confidence 35678777764
No 224
>PF05536 Neurochondrin: Neurochondrin
Probab=46.76 E-value=4.8e+02 Score=30.05 Aligned_cols=176 Identities=12% Similarity=0.142 Sum_probs=102.8
Q ss_pred ccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHH---HH-----HHHHHHHcCC-------CCHHHHHHHHHHHhC
Q psy8267 17 SDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLAL---LS-----ISTFQRALKD-------PNQLIRASALRVLSS 81 (645)
Q Consensus 17 s~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~l---L~-----iNsl~kDL~~-------~N~~iralALr~ls~ 81 (645)
+..+-.+++++.+.+-+.|-.|-+-++.+.+.++.... .+ ..-+.|=|.. +....+.+|+..++.
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34455667777777755555555556666654332110 01 1223344443 446889999999987
Q ss_pred CCc-cccH--HH---HHHHHHhhcCCCCh-HHHHHHHHHHHHHhhcCchhHH-----HHHHHHHHhhcCCChhHHHHHHH
Q psy8267 82 IRV-PMII--PI---VMLAIKDSSLDMSP-YVRKTAAHAIPKLYSLDPEQKE-----ELVLVIEKLLQDKTTLVVGSAVM 149 (645)
Q Consensus 82 I~~-~ei~--~~---l~~~I~~~l~d~~p-yVRK~Aalal~kl~~~~p~~~~-----~~~~~l~~lL~D~~~~V~~sav~ 149 (645)
... ++++ +. -+|.+.+++...+. -+-.-|.-|+.-+. -.|+-.. +-++.+.+.+.+ .+...-.|+.
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 643 2222 11 24566667766665 77778888887777 4444221 223344444444 3344445555
Q ss_pred HHHHHCh--------hhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q psy8267 150 AFEEVCP--------ERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYART 194 (645)
Q Consensus 150 ~l~ei~~--------~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~ 194 (645)
++..++. +....++....++.+.+..........++++|..+.+.
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 5554431 23344566667777777778888899999999998743
No 225
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=46.68 E-value=1.1e+02 Score=26.94 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=53.0
Q ss_pred hcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcccchhhhhce---------E-E
Q psy8267 256 LQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRRALFVPYLKS---------F-Y 324 (645)
Q Consensus 256 l~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p~~~~~~~~~---------f-~ 324 (645)
+...+.....+.+.++.. . ......+++.|.+-| ++++++++-+|..|-.++..-.+-|..++.. | +
T Consensus 13 ~~~p~~~~i~~i~d~~~~-~-~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~ 90 (115)
T cd00197 13 NMGPDWPLIMEICDLINE-T-NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDK 90 (115)
T ss_pred CCCCCHHHHHHHHHHHHC-C-CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhc
Confidence 334445556666655532 1 233456777777666 4778999999999999887655444332211 1 1
Q ss_pred ---EcCCCChHHHHHHHHHHHHcc
Q psy8267 325 ---VRSSDPTHVKTLKLELLTTLA 345 (645)
Q Consensus 325 ---~l~~d~~~Ir~~kLdlL~~L~ 345 (645)
...+.+..||.+.++++...+
T Consensus 91 ~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 91 SKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred cccccCCCChHHHHHHHHHHHHHh
Confidence 112336788888888876543
No 226
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=46.30 E-value=74 Score=29.64 Aligned_cols=51 Identities=25% Similarity=0.155 Sum_probs=34.5
Q ss_pred cHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCC
Q psy8267 87 IIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKT 140 (645)
Q Consensus 87 i~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~ 140 (645)
..+.+...+.+++.++++-|+|.|.-|+... ++|.+ ....+.+..|++|..
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l-~pY~d~L~~Lldd~~ 64 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYL-TPYKDNLENLLDDKT 64 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHH-HhHHHHHHHHcCcch
Confidence 3455666677888888888888888887763 34433 335566777777753
No 227
>KOG2933|consensus
Probab=45.94 E-value=1.1e+02 Score=32.26 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=89.6
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchH----HHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC---ccccHHHH
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDL----ALLSISTFQRALKDPNQLIRASALRVLSSIR---VPMIIPIV 91 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl----~lL~iNsl~kDL~~~N~~iralALr~ls~I~---~~ei~~~l 91 (645)
..-++.+.++|.+-+.|-=|--.+.++..-++|. +..+|=++.|.+++++.-+-..|.-+++.|- ...+.+.+
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888777777777777666653 4467778899999999999888888887762 23333333
Q ss_pred HHHHHhhc---CCCChHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy8267 92 MLAIKDSS---LDMSPYVRKTAAHAIPKLYS-LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFE 152 (645)
Q Consensus 92 ~~~I~~~l---~d~~pyVRK~Aalal~kl~~-~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ 152 (645)
-..+..++ ...+-|||--|--|+-.+-. ..|.. +.+.|...+...++.+...+...+.
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~---~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK---LLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH---HHHHHHHHHhhhchhhhhhhhcccc
Confidence 33333333 34588999988888877754 34433 4455666788888888876655443
No 228
>KOG2032|consensus
Probab=45.94 E-value=4.9e+02 Score=29.43 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=71.2
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChh--h
Q psy8267 86 MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE--R 158 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~--~ 158 (645)
.....+....-.-..||+.-+|.-|+-++...+...|+.+ ..+..+|..|.+|.+..|+.-|+.++.-+.+. +
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 3344556666667889999999999999999999999865 23555677788888899999888888766653 2
Q ss_pred h---hhhHHHHHHHHHHhcCCCchhH---HHHHHHHHHHH
Q psy8267 159 I---DMIHKSYRKLCNLLVDVDEWGQ---VFILNMLTRYA 192 (645)
Q Consensus 159 ~---~li~~~~~kL~~~L~~~~~W~Q---v~iL~lL~~y~ 192 (645)
+ +++-...-++-+...+.++=.. ..+...|..|+
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 2 1222223344455555444333 44555555565
No 229
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=45.90 E-value=29 Score=30.27 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=37.3
Q ss_pred CCCceEEEEEEeeCCCCCccceEeee-----CCCCCCCCccc---ccCCCCcccCCCCceEEEEeEEecC
Q psy8267 535 SPRMISVTLRLTNHHGAPLSRVRIDS-----EGSSLGHGMSM---QPFPEIASIDPGLAVEVSLGLNLND 596 (645)
Q Consensus 535 ~~~~~~~~l~~~N~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 596 (645)
-|+...+.+.|+|.++.+++++++.+ .+ .|... ......+++.|++..++.+.+....
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y----tG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY----TGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQ 78 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC----TTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEE----CCcccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence 46667889999999999999977644 42 26643 2123344999999998877776433
No 230
>KOG2199|consensus
Probab=45.78 E-value=1.5e+02 Score=32.21 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=61.7
Q ss_pred HHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC--------CccccHHHHHH
Q psy8267 22 AVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI--------RVPMIIPIVML 93 (645)
Q Consensus 22 ~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I--------~~~ei~~~l~~ 93 (645)
+|.|...-++-.++-=+-|-++-...+++|..--++-++.|-|.+.||.|.-+||..+..+ +.+--......
T Consensus 12 ~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 12 DVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred HHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 4444444444445544555667777788898889999999999999999999999888653 22222233455
Q ss_pred HHHhhcCC-CChHHHHHHHHH
Q psy8267 94 AIKDSSLD-MSPYVRKTAAHA 113 (645)
Q Consensus 94 ~I~~~l~d-~~pyVRK~Aala 113 (645)
.+++++.+ .+|-|+++-...
T Consensus 92 el~al~~~~~h~kV~~k~~~l 112 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDL 112 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHH
Confidence 56667763 477777775544
No 231
>KOG1992|consensus
Probab=45.17 E-value=6.3e+02 Score=30.47 Aligned_cols=296 Identities=19% Similarity=0.259 Sum_probs=157.7
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcC-CC-ChHHHHHHHHHHHHHhhc--C--chh-------
Q psy8267 58 STFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSL-DM-SPYVRKTAAHAIPKLYSL--D--PEQ------- 124 (645)
Q Consensus 58 Nsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~-d~-~pyVRK~Aalal~kl~~~--~--p~~------- 124 (645)
+.+++- -+|+|.+|+-|=|+|.+.....-.+.... +++. +. ++-.|-.|+.+.-...+. . +|.
T Consensus 9 ~~l~qT-l~pdps~rk~aEr~L~~~e~q~~y~l~lL---~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~ 84 (960)
T KOG1992|consen 9 NYLLQT-LSPDPSVRKPAERALRSLEGQQNYPLLLL---NLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEE 84 (960)
T ss_pred HHHHhc-CCCCCccCchHHHHHHHhccCCCchHHHH---HHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchh
Confidence 344443 35778899998888888877644343332 2332 22 677888888887666552 1 221
Q ss_pred -HHHHHHHHHHhhcCCChhHHH---HHHHHHHHH-ChhhhhhhHHHHHHHHHHhcCCCchhHHHHHH----HHHHHHhhh
Q psy8267 125 -KEELVLVIEKLLQDKTTLVVG---SAVMAFEEV-CPERIDMIHKSYRKLCNLLVDVDEWGQVFILN----MLTRYARTQ 195 (645)
Q Consensus 125 -~~~~~~~l~~lL~D~~~~V~~---sav~~l~ei-~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~----lL~~y~r~~ 195 (645)
.+.+...|..++-.....+.. -|++.+..- .|++|+-+ ...|++.+..-|=-.-.-+|. ++.+|-
T Consensus 85 ~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptL---l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R--- 158 (960)
T KOG1992|consen 85 DREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTL---LPDLVARLSSGDFNVINGVLVTAHSIFKRYR--- 158 (960)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHH---HHHHHhhccccchHHHHHHHHHHHHHHHhcC---
Confidence 234445555555554444443 344443322 27888433 345777766433222222332 344443
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccC---hhHHHHHHhhhhhhc--CCCh---HHHHH-
Q psy8267 196 FTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD---PDHRLLLKNAKPLLQ--SRNA---AVVMA- 266 (645)
Q Consensus 196 ~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d---~d~~~ll~~~~~ll~--s~n~---aVv~e- 266 (645)
|.- .|++.+-+ -++.+| ..+..+++.+..+.+ ..+. .++|+
T Consensus 159 ---~ef---rSdaL~~E------------------------IK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~v 208 (960)
T KOG1992|consen 159 ---PEF---RSDALWLE------------------------IKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGV 208 (960)
T ss_pred ---ccc---ccHHHHHH------------------------HHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 210 11111111 112233 123444555544442 1222 23444
Q ss_pred ---HHHHHHhcCCh-------HHHHHHHHHHHHHhC-CCh-------------hHHHHHHHHHHHHHhhcccchhhhhce
Q psy8267 267 ---VAQLFHHLAPR-------REVAIIAKALVRLLR-SSR-------------EVQTVVLTTIASLAVKRRALFVPYLKS 322 (645)
Q Consensus 267 ---a~~~i~~l~~~-------~~~~~~~~~L~~lL~-s~~-------------niryv~L~~l~~l~~~~p~~~~~~~~~ 322 (645)
++++|+.+... ..++.-.....++|+ +.| .+|--+.+.+...++++++.|++++..
T Consensus 209 lll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~ 288 (960)
T KOG1992|consen 209 LLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPD 288 (960)
T ss_pred HHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 56667666531 234555566666664 211 355567777888889999999988888
Q ss_pred EE-----E---cCCCC--hHHHHHHHHHHHHccCcCCHH------HHHH------------------HHH-----Hhhcc
Q psy8267 323 FY-----V---RSSDP--THVKTLKLELLTTLASETSIA------SILR------------------EFQ-----TYISS 363 (645)
Q Consensus 323 f~-----~---l~~d~--~~Ir~~kLdlL~~L~~~~Nv~------~Il~------------------EL~-----~yl~~ 363 (645)
|. + ...|+ .+...+++..|...+...-.. .+++ |+. +|++.
T Consensus 289 fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRR 368 (960)
T KOG1992|consen 289 FVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRR 368 (960)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHH
Confidence 75 1 12333 467888999999887754333 2222 222 35442
Q ss_pred ----ccHHH-HHHHHHHHHHHHhhccccHHHHHHH
Q psy8267 364 ----VDKAF-VAATVQAIGKCAANIAQVTDTCLTG 393 (645)
Q Consensus 364 ----~d~~~-~~~~i~~I~~la~k~~~~~~~~v~~ 393 (645)
.|.+- |+.++.-++-++.+|......|++.
T Consensus 369 DlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~ 403 (960)
T KOG1992|consen 369 DLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS 403 (960)
T ss_pred hcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 34443 5567788888888887655555544
No 232
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=44.68 E-value=42 Score=29.90 Aligned_cols=55 Identities=31% Similarity=0.411 Sum_probs=33.7
Q ss_pred eEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCc-ccCCCCceEEEEeEEecCCC
Q psy8267 539 ISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIA-SIDPGLAVEVSLGLNLNDST 598 (645)
Q Consensus 539 ~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~ 598 (645)
..+.++++|+++.+.. +++.+++ +.|+++.. +.-+ +++||++....+.+......
T Consensus 33 N~Y~lkl~Nkt~~~~~-~~i~~~g---~~~~~l~~-~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRT-YTISVEG---LPGAELQG-PENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEE-SSS-EE-EEEEEES----SS-EE-E-S--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEECCCCCEE-EEEEEec---CCCeEEEC-CCcceEECCCCEEEEEEEEEECHHH
Confidence 5678999999999886 7888874 33888854 3333 89999998877777644443
No 233
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=44.37 E-value=4.2e+02 Score=28.17 Aligned_cols=112 Identities=16% Similarity=0.070 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCccccHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHhhcCCChhHHHHH
Q psy8267 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLD-MSPYVRKTAAHAIPKLYSLD-PEQKEELVLVIEKLLQDKTTLVVGSA 147 (645)
Q Consensus 70 ~iralALr~ls~I~~~ei~~~l~~~I~~~l~d-~~pyVRK~Aalal~kl~~~~-p~~~~~~~~~l~~lL~D~~~~V~~sa 147 (645)
.-|.+....|+.+....+.+.+...+...+.. .+.-+...++-++.+-+... .+.-+..++.+.+-|.|+.+.|...-
T Consensus 2 d~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w 81 (339)
T PF12074_consen 2 DQRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAW 81 (339)
T ss_pred cHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHH
Confidence 34777778888877766777777777666654 58888888888887766544 55567788899999999999888877
Q ss_pred HHHHHHHCh-----hhhhhhHHHHHHHHHHh----cCCCchhH
Q psy8267 148 VMAFEEVCP-----ERIDMIHKSYRKLCNLL----VDVDEWGQ 181 (645)
Q Consensus 148 v~~l~ei~~-----~~~~li~~~~~kL~~~L----~~~~~W~Q 181 (645)
+..+.+++- +...++.+....|.+.+ ..+.+..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~ 124 (339)
T PF12074_consen 82 LLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQ 124 (339)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 777776653 22234444455555555 34555555
No 234
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=44.19 E-value=48 Score=29.13 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHH--HHHHhh-----ccCChhhHHHHHHHHHHHhhcCCcchHHH
Q psy8267 368 FVAATVQAIGKCAANIAQVTDTCLT--GLVSLL-----SYSDEAVVAESVVVIKNLLQTQPEAYTDI 427 (645)
Q Consensus 368 ~~~~~i~~I~~la~k~~~~~~~~v~--~ll~LL-----~~~~~~v~~e~v~~i~~il~~~p~~~~~~ 427 (645)
||+.+|+-||.++-+.+...+...+ .+--+| ...++++.+-++..||.++..+|+-|+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6888999999999877766554432 222233 34567899999999999999999877543
No 235
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=43.55 E-value=59 Score=30.31 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 126 EELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 126 ~~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
+++.+.+..+|.+.|+.|...|+-++..-.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 456667778888888888888777766553
No 236
>KOG2137|consensus
Probab=43.40 E-value=3.5e+02 Score=31.83 Aligned_cols=148 Identities=19% Similarity=0.309 Sum_probs=89.0
Q ss_pred HHHHHhCCCCcc----cchHHHHHHhccCCchhHHHHHH-HHHHhccc--CchHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy8267 6 CCYMMAKGRDAS----DLFPAVVKNVVSKNIEVKKLVYV-YLARYAEE--QQDLALLSISTFQRALKDPNQLIRASALRV 78 (645)
Q Consensus 6 li~l~~~G~dvs----~lf~~vvkli~s~~~~~KkL~Yl-~l~~~~~~--~~dl~lL~iNsl~kDL~~~N~~iralALr~ 78 (645)
++-.+..|.+.. ..++.+...+..++...=.+..+ .+-.+.+. .+|+.-=+.--+..-+++....++..+|+.
T Consensus 333 ~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~ 412 (700)
T KOG2137|consen 333 LVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQI 412 (700)
T ss_pred hhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHh
Confidence 344566676654 35566666665322222111111 23223332 233322344456677889999999999998
Q ss_pred HhC----CCccccHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhc-Cchh-HHHHHHHHHHhhcCCChhHHHHHHHHH
Q psy8267 79 LSS----IRVPMIIPIVMLAIKDSS-LDMSPYVRKTAAHAIPKLYSL-DPEQ-KEELVLVIEKLLQDKTTLVVGSAVMAF 151 (645)
Q Consensus 79 ls~----I~~~ei~~~l~~~I~~~l-~d~~pyVRK~Aalal~kl~~~-~p~~-~~~~~~~l~~lL~D~~~~V~~sav~~l 151 (645)
+.. |..+-+-+.+++.|+.+. .+.+.+||-.++.|+..+.+. |--. ++++ .-+.+..+-.+|.++...+.++
T Consensus 413 lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~-lpi~~~~~~~dp~iv~~~~~i~ 491 (700)
T KOG2137|consen 413 LPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDEL-LPILKCIKTRDPAIVMGFLRIY 491 (700)
T ss_pred hhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHhcCCCcHHHHHHHHHH
Confidence 876 456667777888887764 556999999999999999842 2222 2333 3344566667777777666655
Q ss_pred HHH
Q psy8267 152 EEV 154 (645)
Q Consensus 152 ~ei 154 (645)
..+
T Consensus 492 ~~l 494 (700)
T KOG2137|consen 492 EAL 494 (700)
T ss_pred HHH
Confidence 544
No 237
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=43.31 E-value=3.3e+02 Score=29.26 Aligned_cols=138 Identities=13% Similarity=0.110 Sum_probs=69.3
Q ss_pred cchHHHHHHhccCCchhHHHHHHHHHHhcccC---chHHHHHHHHHHHHcCCCCHHHHHHHHHHHh------CCCccccH
Q psy8267 18 DLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQ---QDLALLSISTFQRALKDPNQLIRASALRVLS------SIRVPMII 88 (645)
Q Consensus 18 ~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~---~dl~lL~iNsl~kDL~~~N~~iralALr~ls------~I~~~ei~ 88 (645)
.+|-++++.+.+++...++.++--+..-..-+ |-+...+...+..-+.. |-..-.-.+|++. ++...--+
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 46667777776666555555433222111111 11233333333333332 2111111122222 23333344
Q ss_pred HHHHHHHHhhc----------CCCChHHHHHHHHHHHHHhhcC----chhHHHHHHHHHHhhcCCC-h-hHHHHHHHHHH
Q psy8267 89 PIVMLAIKDSS----------LDMSPYVRKTAAHAIPKLYSLD----PEQKEELVLVIEKLLQDKT-T-LVVGSAVMAFE 152 (645)
Q Consensus 89 ~~l~~~I~~~l----------~d~~pyVRK~Aalal~kl~~~~----p~~~~~~~~~l~~lL~D~~-~-~V~~sav~~l~ 152 (645)
-.+++++..|+ .+.+..+|.-||..+..+.+.. |.+.+.+...+.+.|.|++ + .....|+..+.
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLS 336 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Confidence 44566666665 2345689999999988888754 4445566655666565543 2 22456777776
Q ss_pred HHCh
Q psy8267 153 EVCP 156 (645)
Q Consensus 153 ei~~ 156 (645)
.+.+
T Consensus 337 ~lG~ 340 (343)
T cd08050 337 ALGP 340 (343)
T ss_pred HhCc
Confidence 6654
No 238
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=43.00 E-value=1.1e+02 Score=26.34 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=43.4
Q ss_pred hhccccHHHHHHHHHHHHHHHhhccc----cHHHHHHHHHHhhccCChhhHHHHHHHHHHHhh
Q psy8267 360 YISSVDKAFVAATVQAIGKCAANIAQ----VTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQ 418 (645)
Q Consensus 360 yl~~~d~~~~~~~i~~I~~la~k~~~----~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~ 418 (645)
|+...+ +=+.+++...-..+...+. .+.+|+.++-+++..+.+++..| ..++..|+.
T Consensus 13 f~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~ 73 (95)
T PF07749_consen 13 FVAASD-DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLE 73 (95)
T ss_dssp HHHS-C-HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHH
T ss_pred HHcCcH-HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHh
Confidence 555555 6667777777777776653 57899999999999999999998 578888887
No 239
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=42.03 E-value=2.1e+02 Score=24.63 Aligned_cols=58 Identities=10% Similarity=0.243 Sum_probs=42.0
Q ss_pred hhccccHHHHHHHHHHHHHHHhhcc----ccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhc
Q psy8267 360 YISSVDKAFVAATVQAIGKCAANIA----QVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQT 419 (645)
Q Consensus 360 yl~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~ 419 (645)
|+...+ +=+.+++..+-..+.+.. ..+..|+.++-+++..+.+|+..| +.++..|+.+
T Consensus 11 f~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E-~~RL~~iL~~ 72 (93)
T cd00238 11 FVDASD-EERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKE-LARLERLLEK 72 (93)
T ss_pred Hhccch-hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHH-HHHHHHHHhc
Confidence 554444 446777777766666553 456889999888888888888888 5788888876
No 240
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=41.99 E-value=35 Score=32.89 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=37.3
Q ss_pred CCChHHHHHHHHHHHHHhhcCchhH--HHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy8267 101 DMSPYVRKTAAHAIPKLYSLDPEQK--EELVLVIEKLLQDKTTLVVGSAVMAFEEV 154 (645)
Q Consensus 101 d~~pyVRK~Aalal~kl~~~~p~~~--~~~~~~l~~lL~D~~~~V~~sav~~l~ei 154 (645)
|.---+||.|.-|++.++...++.+ ..+.+++..-|.| ++.+..-+...+..+
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl 92 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKL 92 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHH
Confidence 3345699999999999998776653 6789999999999 555544343334433
No 241
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=41.55 E-value=28 Score=38.63 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=11.8
Q ss_pred HHhhcCCCChHHHHHHHHHHHHH
Q psy8267 95 IKDSSLDMSPYVRKTAAHAIPKL 117 (645)
Q Consensus 95 I~~~l~d~~pyVRK~Aalal~kl 117 (645)
|.++++|++|-||+.|..|+.|+
T Consensus 401 vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 401 VMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHH
Confidence 44445555555555555555544
No 242
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=40.98 E-value=42 Score=28.25 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=40.3
Q ss_pred ccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEEec
Q psy8267 533 LASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLN 595 (645)
Q Consensus 533 ~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 595 (645)
+..|....+.+++.|.+..+..++.+.+. .. |-.+ ....++.|.||++.++.+.+...
T Consensus 15 ~~~g~~~~i~~~V~N~G~~~~~~~~v~~~--~~--~~~~-~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 15 VVPGEPVTITVTVKNNGTADAENVTVRLY--LD--GNSV-STVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp EETTSEEEEEEEEEE-SSS-BEEEEEEEE--ET--TEEE-EEEEESEB-TTEEEEEEEEEE-S
T ss_pred ccCCCEEEEEEEEEECCCCCCCCEEEEEE--EC--Ccee-ccEEECCcCCCcEEEEEEEEEeC
Confidence 34678889999999999999999999776 22 3333 35667899999998877665554
No 243
>KOG0168|consensus
Probab=40.89 E-value=3.6e+02 Score=32.53 Aligned_cols=129 Identities=12% Similarity=0.160 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHHH---HccCcCC-----HHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhccccHHHHHH-----H-H
Q psy8267 330 PTHVKTLKLELLT---TLASETS-----IASILREFQTYISS-VDKAFVAATVQAIGKCAANIAQVTDTCLT-----G-L 394 (645)
Q Consensus 330 ~~~Ir~~kLdlL~---~L~~~~N-----v~~Il~EL~~yl~~-~d~~~~~~~i~~I~~la~k~~~~~~~~v~-----~-l 394 (645)
|++....+|.=|+ .|.|++. ++.++.-|..-+++ .+.++.-.+++++..+.+-+|......|+ + +
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 3455555554443 2344444 34455555555544 56888889999999999999988877776 3 3
Q ss_pred HHhhccCChhhHHHHHHHHHHHhhcCCc--chHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCC
Q psy8267 395 VSLLSYSDEAVVAESVVVIKNLLQTQPE--AYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVP 459 (645)
Q Consensus 395 l~LL~~~~~~v~~e~v~~i~~il~~~p~--~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~ 459 (645)
-+|+...-=.|.+++.+.+..|-|.+|. ++.-.+..++.|+|-.. ..|...++-+....|..+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFS-i~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFS-IHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence 3455544334788889999999998885 34445556666776432 2343333556666665543
No 244
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=40.42 E-value=55 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=22.2
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy8267 353 ILREFQTYISSVDKAFVAATVQAIGKCA 380 (645)
Q Consensus 353 Il~EL~~yl~~~d~~~~~~~i~~I~~la 380 (645)
.+.-|...+.+.|++++++++-+++.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3456777788888899999988888876
No 245
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=39.90 E-value=1.9e+02 Score=30.09 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcc
Q psy8267 280 VAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRR 313 (645)
Q Consensus 280 ~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p 313 (645)
..-+..++..++. .++++|.-|+..+.++...-|
T Consensus 117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 4567888899996 678999999999999987444
No 246
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=39.83 E-value=63 Score=28.49 Aligned_cols=71 Identities=17% Similarity=0.344 Sum_probs=37.3
Q ss_pred CCCceEEEEEEeeCCCCCcc----ceEeee-CCCCCCCCcccccCC--CCc-ccCCCCceEEEEeEEecCCCCCCccEE
Q psy8267 535 SPRMISVTLRLTNHHGAPLS----RVRIDS-EGSSLGHGMSMQPFP--EIA-SIDPGLAVEVSLGLNLNDSTQPLSPRL 605 (645)
Q Consensus 535 ~~~~~~~~l~~~N~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~--~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (645)
.+.-..+.+++.|+++.++. .|.+.. ++..-+......... .+. +|.||.+.+..+.+++....++..+++
T Consensus 34 g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~~~~l~~ 112 (123)
T PF11611_consen 34 GNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDKPYTLEY 112 (123)
T ss_dssp -SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-GG-EEEE
T ss_pred CCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCccEEEEE
Confidence 34557889999999877653 344431 210111111111111 233 999999999999999998888866665
No 247
>KOG3687|consensus
Probab=39.75 E-value=3.7e+02 Score=32.96 Aligned_cols=174 Identities=18% Similarity=0.226 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHhhcccchhhhhceEE-EcCCCC-hHHHHHHHHHHHHccCc----CC
Q psy8267 278 REVAIIAKALVRLLR--SSREVQTVVLTTIASLAVKRRALFVPYLKSFY-VRSSDP-THVKTLKLELLTTLASE----TS 349 (645)
Q Consensus 278 ~~~~~~~~~L~~lL~--s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~-~l~~d~-~~Ir~~kLdlL~~L~~~----~N 349 (645)
+++..+-+....|+. ...+.|.++|.-+.++++...+...-....|| +-.++| ..=-+.-|++|-.|+++ +|
T Consensus 63 ~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~~~l~I~R~~FF~vI~~~p~~edL~~rLe~L~~LTDnG~~It~ 142 (1697)
T KOG3687|consen 63 HAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQGERLGILRALFFKVIKDYPSNEDLHERLEVLKALTDNGRHITY 142 (1697)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhhCCccccc
Confidence 446666677777775 44589999999999998876654433333565 333333 22233456666666665 45
Q ss_pred HHHHHHHHH----------Hhh-----------ccccHHHHHHHHHHHHHHHhhcccc-HHHHHHHHHH-----------
Q psy8267 350 IASILREFQ----------TYI-----------SSVDKAFVAATVQAIGKCAANIAQV-TDTCLTGLVS----------- 396 (645)
Q Consensus 350 v~~Il~EL~----------~yl-----------~~~d~~~~~~~i~~I~~la~k~~~~-~~~~v~~ll~----------- 396 (645)
+++=+..+. .|+ .+.|.++..-+++.+.-++.++... --.|+.++.-
T Consensus 143 ~Ee~iG~f~l~W~~~~l~~~~L~~lvnl~kfn~~~lD~~i~~l~vq~~c~lc~~t~~~i~~~~l~~l~~v~~y~~~P~e~ 222 (1697)
T KOG3687|consen 143 LEEELGDFVLQWMDVGLSSEFLLVLVNLVKFNSCYLDEYIARLMVQMICLLCVRTASSVDIEVLQVLDAVVCYNCLPAES 222 (1697)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhccccchhhhhhhhhheeeeecccch
Confidence 554333322 111 1357888888998888776555422 2233333211
Q ss_pred ---hhc----c-CChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccC---ChHHHHHHHHHHHhc
Q psy8267 397 ---LLS----Y-SDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSI---TVPTARAAILWLLGE 453 (645)
Q Consensus 397 ---LL~----~-~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i---~~~~ak~~~iwilGE 453 (645)
++. . ....+.+.+|..+++++-.+ +--..+..||.++++- ++.....++++.+|-
T Consensus 223 lpQ~I~tlcrt~nv~~~C~~~~k~m~nllgth--lg~~~~~~mc~~~~drA~~eDa~llrgavf~~~m 288 (1697)
T KOG3687|consen 223 LPQFIVTLCRTINVKELCEPCWKLMRNLLGTH--LGHSAIYNMCHLMEDRAYMEDAPLLRGAVFFVGM 288 (1697)
T ss_pred HHHHHHHHhcccchhhcCchHHHHHHhhhhcc--cchHHHHHHHhhhhhhhhhccchhhcchhhhcch
Confidence 111 1 11224556677777777443 2234677888877642 232333344666654
No 248
>KOG1967|consensus
Probab=39.55 E-value=1.3e+02 Score=36.26 Aligned_cols=102 Identities=13% Similarity=0.196 Sum_probs=45.8
Q ss_pred HHHHHHHHhC-CChhHHHHHHHHHHHHHhhccc-chhhhhceEE-----EcCCCChHHHHHHHHHHHHccCcC------C
Q psy8267 283 IAKALVRLLR-SSREVQTVVLTTIASLAVKRRA-LFVPYLKSFY-----VRSSDPTHVKTLKLELLTTLASET------S 349 (645)
Q Consensus 283 ~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~-~~~~~~~~f~-----~l~~d~~~Ir~~kLdlL~~L~~~~------N 349 (645)
+++.|++... .+...|-.-|..+.++...-|. ++-|....++ ++.-.|..+|.-+|+.+-.+.++. -
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~ 947 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEH 947 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHH
Confidence 4444444443 2234555555555555544442 2233333322 234445555555555554444332 2
Q ss_pred HHHHHHHHHHhhcccc---HHHHHHHHHHHHHHHhhcc
Q psy8267 350 IASILREFQTYISSVD---KAFVAATVQAIGKCAANIA 384 (645)
Q Consensus 350 v~~Il~EL~~yl~~~d---~~~~~~~i~~I~~la~k~~ 384 (645)
++.++.-|+.--.+.| ...|..+++.++.+++..|
T Consensus 948 ~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P 985 (1030)
T KOG1967|consen 948 LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLP 985 (1030)
T ss_pred HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCC
Confidence 3344444443333333 2345555555555555444
No 249
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=38.71 E-value=77 Score=36.01 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=80.4
Q ss_pred cCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCC--CHHHHHHHHHHH---hCC---Cccc----cHHHHHHHHH
Q psy8267 29 SKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP--NQLIRASALRVL---SSI---RVPM----IIPIVMLAIK 96 (645)
Q Consensus 29 s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~--N~~iralALr~l---s~I---~~~e----i~~~l~~~I~ 96 (645)
+..+.+|=|.||-=+..+....+-.+-+ +.-.+.++ |.-.|.+|++++ ..+ ..+. +.+.+.....
T Consensus 296 ~~~lq~kIL~~L~kS~~Aa~~~~~~~~i---~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~ 372 (501)
T PF13001_consen 296 SPRLQEKILSLLSKSVIAATSFPNILQI---VFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGW 372 (501)
T ss_pred CHHHHHHHHHHHHHhHHHHhCCccHHHH---HhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCc
Confidence 4456677777776666655443322222 34456677 778899999999 443 2233 3333444444
Q ss_pred hhcC--------CCChHHHHHHHHHHHHHhhcCchhH-H--HHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 97 DSSL--------DMSPYVRKTAAHAIPKLYSLDPEQK-E--ELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 97 ~~l~--------d~~pyVRK~Aalal~kl~~~~p~~~-~--~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
+.+. ..+.-.|..|..|++.+.+.+|..+ + +++..+-+-|+++++.|..+.-.|+..+.
T Consensus 373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 4452 2377899999999999999999976 2 45666666668888888877666665543
No 250
>KOG2753|consensus
Probab=38.65 E-value=1.8e+02 Score=31.05 Aligned_cols=121 Identities=13% Similarity=0.129 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcC-CcchHHHH
Q psy8267 351 ASILREFQTYISSVDKAFVAATVQAIGKCAANIAQ-VTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQ-PEAYTDII 428 (645)
Q Consensus 351 ~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~-~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~-p~~~~~~i 428 (645)
+.=+.||..|+...+.+.-++.-+ +-.. +....+... .++...++.=.+-+...|..|+.+- |+.++..+
T Consensus 15 ~~Ql~elr~yl~~~eaeis~e~~~-------kgl~~~l~~ii~~c-~v~~k~~ekdle~vlnsi~sLi~~~~~e~~e~~v 86 (378)
T KOG2753|consen 15 EEQLAELRAYLKKLEAEISEEASE-------KGLEEDLLMIIEAC-DVLAKIPEKDLECVLNSIVSLIKNAPPEKVEEMV 86 (378)
T ss_pred HHHHHHHHHHHhhcCcccchhhhc-------cCHHHHHHHHHHHh-HHhhcCCcchHHHHHHHHHHHHHhCCHHHhHHHH
Confidence 445678888887766554433222 1111 111111111 1111112212344445556666543 45555555
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHHHHHHHhhcCCchHHHHHHHHhhhhhcccC
Q psy8267 429 RHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAAGI 495 (645)
Q Consensus 429 ~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr~l~~~f~~e~~~vk~~iL~~~~~~a~~y 495 (645)
..+|+-+-+ ...+..+.+.-.+|..+++++....| +|.++...+++-|..|
T Consensus 87 ~a~~ekva~---------------q~n~~~~~l~L~vLsnLfn~~d~~~~-aR~~Vy~~lv~la~~~ 137 (378)
T KOG2753|consen 87 KAICEKVAK---------------QPNDKTASLRLQVLSNLFNGVDKPTP-ARYQVYMSLVTLAASC 137 (378)
T ss_pred HHHHHHHhc---------------CccCCCcccHHHHHHHHHhccCCCch-HHHHHHHHHHHHHhhc
Confidence 555443321 11122233455667777777777777 8999888888655555
No 251
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=38.52 E-value=4.6e+02 Score=27.03 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=39.3
Q ss_pred cCCCChHHHHHHH--HHHHHccC-cCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcccc
Q psy8267 326 RSSDPTHVKTLKL--ELLTTLAS-ETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQV 386 (645)
Q Consensus 326 l~~d~~~Ir~~kL--dlL~~L~~-~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~ 386 (645)
..+||..|.+.-| .+.-.|+. +.=++..+.-|++=+.+.....+.++.+++..|+.+|+..
T Consensus 179 p~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~ 242 (262)
T PF14500_consen 179 PPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGAD 242 (262)
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHH
Confidence 3567744544433 33334443 3334566666667677777778889999999999888643
No 252
>KOG2956|consensus
Probab=37.20 E-value=6.5e+02 Score=28.34 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=92.5
Q ss_pred CChHHHHHHHHHHHHccCcC-------CHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhccc----cHHHHHHHHHH
Q psy8267 329 DPTHVKTLKLELLTTLASET-------SIASILREFQTYISS-VDKAFVAATVQAIGKCAANIAQ----VTDTCLTGLVS 396 (645)
Q Consensus 329 d~~~Ir~~kLdlL~~L~~~~-------Nv~~Il~EL~~yl~~-~d~~~~~~~i~~I~~la~k~~~----~~~~~v~~ll~ 396 (645)
...+=+..+|-=|..|..+. +...|+.-+++-+.+ .|...++.+.+-|+.+...-|. .++-.+...++
T Consensus 299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 299 ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 34556677777555555444 356677777777777 6777788888888887765543 33444444444
Q ss_pred hhccCChhhHHHHHHHHHHHh-hcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCC-----CchHHHHHHHH
Q psy8267 397 LLSYSDEAVVAESVVVIKNLL-QTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVP-----ALGPDVLRKAA 470 (645)
Q Consensus 397 LL~~~~~~v~~e~v~~i~~il-~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~-----~~~~diLr~l~ 470 (645)
--.+..+.++.++.+..-.++ +-.|... +..++..+-..++|.+.++ +-++-+-.+.++ ++-+|+.=.++
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~~---I~~i~~~Ilt~D~~~~~~~-iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC---IVNISPLILTADEPRAVAV-IKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchhH---HHHHhhHHhcCcchHHHHH-HHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 444455556665554433333 3345433 3344444444555655543 445555544433 24566777777
Q ss_pred HhhcCCchHHHHHHHHhhh
Q psy8267 471 ITFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 471 ~~f~~e~~~vk~~iL~~~~ 489 (645)
+.|.+.+..||-..+-..+
T Consensus 455 qay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHhcCchHHhhhhHHHhHH
Confidence 8899888888876665554
No 253
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=37.18 E-value=52 Score=22.52 Aligned_cols=26 Identities=27% Similarity=0.196 Sum_probs=18.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHH
Q psy8267 92 MLAIKDSSLDMSPYVRKTAAHAIPKL 117 (645)
Q Consensus 92 ~~~I~~~l~d~~pyVRK~Aalal~kl 117 (645)
++.+.+++.++++-+++.|+.++..+
T Consensus 14 i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 14 LPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44456666677888888888887765
No 254
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=37.12 E-value=2.7e+02 Score=32.99 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCC----CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcC---ch---h
Q psy8267 55 LSISTFQRALKDPNQLIRASALRVLSSI----RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD---PE---Q 124 (645)
Q Consensus 55 L~iNsl~kDL~~~N~~iralALr~ls~I----~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~---p~---~ 124 (645)
.++|.+.-.++|+--+.++-|..+++.+ ..+.+.-.....+.+|+.+++--|+=.||+|+.-+...+ +- .
T Consensus 460 fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 460 FIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred HHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 3445555556677777788888888876 345566667888899999998899999999988776543 11 2
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhh
Q psy8267 125 KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER 158 (645)
Q Consensus 125 ~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~ 158 (645)
++..++.+.+|=++-+..+++.+.-.|.+-.++.
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseE 573 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEE 573 (970)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHh
Confidence 3444555555556666666666666665555443
No 255
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=37.01 E-value=36 Score=22.25 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCCccccHHHH
Q psy8267 70 LIRASALRVLSSIRVPMIIPIV 91 (645)
Q Consensus 70 ~iralALr~ls~I~~~ei~~~l 91 (645)
.+|..|..+|++++.++-++.+
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L 23 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPAL 23 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHH
Confidence 3555666666666655544443
No 256
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=36.67 E-value=57 Score=28.16 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=33.6
Q ss_pred CCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEE
Q psy8267 536 PRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLN 593 (645)
Q Consensus 536 ~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 593 (645)
+......++++|+++.++ .+.++. ..|..+.+. |....|.||++.++.|...
T Consensus 17 ~~~~~~~l~l~N~s~~~i---~fKikt-t~~~~y~v~--P~~G~i~p~~~~~i~I~~~ 68 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPI---AFKIKT-TNPNRYRVK--PSYGIIEPGESVEITITFQ 68 (109)
T ss_dssp SS-EEEEEEEEE-SSSEE---EEEEEE-S-TTTEEEE--SSEEEE-TTEEEEEEEEE-
T ss_pred CceEEEEEEEECCCCCcE---EEEEEc-CCCceEEec--CCCEEECCCCEEEEEEEEE
Confidence 345778899999998865 555553 335566665 6677999999988666444
No 257
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=35.96 E-value=1.4e+02 Score=28.30 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhcccc
Q psy8267 352 SILREFQTYISS-VDKAFVAATVQAIGKCAANIAQV 386 (645)
Q Consensus 352 ~Il~EL~~yl~~-~d~~~~~~~i~~I~~la~k~~~~ 386 (645)
.+++-|...++. .+..+|+|+++.+|.|+.--|-.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~ 45 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYK 45 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHH
Confidence 455556666654 46889999999999998654433
No 258
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=35.90 E-value=4.1e+02 Score=27.34 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=34.0
Q ss_pred HHHHHhhcc--ccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhcc
Q psy8267 355 REFQTYISS--VDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSY 400 (645)
Q Consensus 355 ~EL~~yl~~--~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~ 400 (645)
+.|..|+.+ .|...|..++.+++.++..-+...+.++.++-.++..
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344556655 3556788889999999988888888888887777764
No 259
>KOG2011|consensus
Probab=35.72 E-value=4.5e+02 Score=32.59 Aligned_cols=105 Identities=23% Similarity=0.194 Sum_probs=71.8
Q ss_pred cCchHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHhCC--Ccccc--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q psy8267 48 EQQDLALLSISTFQRAL-----KDPNQLIRASALRVLSSI--RVPMI--IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLY 118 (645)
Q Consensus 48 ~~~dl~lL~iNsl~kDL-----~~~N~~iralALr~ls~I--~~~ei--~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~ 118 (645)
++.|..--++|.+-+-. .|-.|.||+--+..||-= ..|++ -......+-=.|+|.+.-||++.+-++.++|
T Consensus 275 e~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~ 354 (1048)
T KOG2011|consen 275 EQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLY 354 (1048)
T ss_pred HHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHH
Confidence 44554555667776655 688999999999998851 11221 1122333334589999999999999999999
Q ss_pred hcCchh------HHHHHHHHHHhh-cCCChhHHHHHHHHHH
Q psy8267 119 SLDPEQ------KEELVLVIEKLL-QDKTTLVVGSAVMAFE 152 (645)
Q Consensus 119 ~~~p~~------~~~~~~~l~~lL-~D~~~~V~~sav~~l~ 152 (645)
..+.+. ...|-++|.++. .|.+++|...++....
T Consensus 355 e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~ 395 (1048)
T KOG2011|consen 355 EKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCL 395 (1048)
T ss_pred hccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 985442 256788888887 5677777766555444
No 260
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=35.65 E-value=1.2e+02 Score=31.66 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh
Q psy8267 85 PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ 124 (645)
Q Consensus 85 ~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~ 124 (645)
.+..+-+++++..++.|.++.+|..++.++..+....|..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~ 153 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA 153 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh
Confidence 3455678999999999999999999999999999876653
No 261
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=35.61 E-value=6.8e+02 Score=28.07 Aligned_cols=241 Identities=12% Similarity=0.113 Sum_probs=116.7
Q ss_pred hHHHHHHhhhhh-hcCCChHHHHHHHHHH---HhcC--ChHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhhcc-cch
Q psy8267 244 DHRLLLKNAKPL-LQSRNAAVVMAVAQLF---HHLA--PRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRR-ALF 316 (645)
Q Consensus 244 d~~~ll~~~~~l-l~s~n~aVv~ea~~~i---~~l~--~~~~~~~~~~~L~~lL~s~~niryv~L~~l~~l~~~~p-~~~ 316 (645)
++..+++.+..+ .++++...+-+|++++ +..+ |.+.+..++..|++..+.. +..-.+-+.|..|...+- ...
T Consensus 173 ~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~-~l~~~~w~~m~nL~~S~~g~~~ 251 (464)
T PF11864_consen 173 EISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV-SLCKPSWRTMRNLLKSHLGHSA 251 (464)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc-ccchhHHHHHHHHHcCccHHHH
Confidence 344455554443 3445555555555543 2222 4456777888888776432 333334444444443221 111
Q ss_pred hhhhceEEE----cCCCChHHHHHHHHHHHHccCcC---C-----HHH--HHHHHHHhhccccHHHHHHHHHHHHHHH-h
Q psy8267 317 VPYLKSFYV----RSSDPTHVKTLKLELLTTLASET---S-----IAS--ILREFQTYISSVDKAFVAATVQAIGKCA-A 381 (645)
Q Consensus 317 ~~~~~~f~~----l~~d~~~Ir~~kLdlL~~L~~~~---N-----v~~--Il~EL~~yl~~~d~~~~~~~i~~I~~la-~ 381 (645)
-..+-.|.. ...++..+-|=|+.++-.+.-.. . ... ++..|..-++..+.-+--+++..+.++- .
T Consensus 252 i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~ 331 (464)
T PF11864_consen 252 IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDG 331 (464)
T ss_pred HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhH
Confidence 111112210 11345667778888887665544 2 223 8888887777655444445555554444 3
Q ss_pred hc-----cccHHHHHHHHHHhhccCC------------hh---hHHHHHHHHHHHhhcCC--cchHHHHHHHHHhhccCC
Q psy8267 382 NI-----AQVTDTCLTGLVSLLSYSD------------EA---VVAESVVVIKNLLQTQP--EAYTDIIRHMVRLSDSIT 439 (645)
Q Consensus 382 k~-----~~~~~~~v~~ll~LL~~~~------------~~---v~~e~v~~i~~il~~~p--~~~~~~i~~L~~~l~~i~ 439 (645)
+| ....+..++++..+..... +. ...+.+..+.++..+.. ..++.+..-+.+..+...
T Consensus 332 ~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~lp 411 (464)
T PF11864_consen 332 KYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYLP 411 (464)
T ss_pred hhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccCC
Confidence 33 2333455565554433211 11 12233334444444321 134444444444444444
Q ss_pred hHHHHHHHHHHHhcccccCCCch--HHHHHHHHHhhc--CCchHHHHHHHHhh
Q psy8267 440 VPTARAAILWLLGEYSHLVPALG--PDVLRKAAITFV--NEEDIVKLQVLNLA 488 (645)
Q Consensus 440 ~~~ak~~~iwilGEy~~~i~~~~--~diLr~l~~~f~--~e~~~vk~~iL~~~ 488 (645)
++.+...+ ..++....|.-+ .+-+..+.++|. +.++.||...|...
T Consensus 412 ~s~~~~vl---~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l 461 (464)
T PF11864_consen 412 DSSALLVL---FYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVL 461 (464)
T ss_pred HHHHHHHH---HHHhcccCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 44455443 333322223212 256677777776 35678999888765
No 262
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=35.56 E-value=1.4e+02 Score=30.68 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=53.1
Q ss_pred ccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCC--CcccccC--C--CCcccCCCCceEEEEeEE-ecCCCCCCccEE
Q psy8267 533 LASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGH--GMSMQPF--P--EIASIDPGLAVEVSLGLN-LNDSTQPLSPRL 605 (645)
Q Consensus 533 ~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~--~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 605 (645)
+|=|...+..|-+.|.+..+++++++.++-..... .+.+... . +.+.|.||++.+-.+..+ .+...+...-++
T Consensus 10 iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~G~h~L~c~V 89 (249)
T PF06159_consen 10 IYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHELKELGNHTLVCTV 89 (249)
T ss_pred EeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEeeecCceEEEEEE
Confidence 56677778899999999999999999654212212 2223322 2 244899999999888888 455555668888
Q ss_pred eecc
Q psy8267 606 VWGV 609 (645)
Q Consensus 606 ~~~~ 609 (645)
+|.-
T Consensus 90 sY~~ 93 (249)
T PF06159_consen 90 SYTD 93 (249)
T ss_pred EEec
Confidence 8853
No 263
>KOG2081|consensus
Probab=35.28 E-value=1.8e+02 Score=33.20 Aligned_cols=98 Identities=20% Similarity=0.306 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccC-C-hhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCC-hHH
Q psy8267 366 KAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYS-D-EAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSIT-VPT 442 (645)
Q Consensus 366 ~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~-~-~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~-~~~ 442 (645)
.+||..++..+..++--..+ +.|+..+..-+..+ . -..++.++-.++.++.+-+-....++..+++.+.+.. ...
T Consensus 366 ~~fR~~v~dvl~Dv~~iigs--~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIGS--DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchh
Confidence 35777777777776655433 35666555444432 1 2355555666777777766656667777777775542 223
Q ss_pred HHHHHHHHHhcccccCCCchHHHH
Q psy8267 443 ARAAILWLLGEYSHLVPALGPDVL 466 (645)
Q Consensus 443 ak~~~iwilGEy~~~i~~~~~diL 466 (645)
.+...+-++|||++.+.. .|+.+
T Consensus 444 ~~~ts~ll~g~~~ew~~~-~p~~l 466 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQ-HPELL 466 (559)
T ss_pred HHHHHHHHHHHHHHHHHh-CcHHH
Confidence 777779999999998877 55443
No 264
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=35.18 E-value=51 Score=29.16 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=29.0
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy8267 95 IKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFE 152 (645)
Q Consensus 95 I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ 152 (645)
+..++.|+++.||=.||..++++ .|+......+ .+-+..-....++|-+.+.
T Consensus 52 Ll~LL~hpn~~VRl~AA~~~L~~---~p~eA~~~Le---~ia~~~~~~~a~~a~~~l~ 103 (106)
T PF09450_consen 52 LLPLLKHPNMQVRLWAAAHTLRY---APEEARKVLE---EIASSKWFPQAGDAGMCLR 103 (106)
T ss_dssp GGGGGGSS-HHHHHHHHHTTTTT----HHHHHHHHH---HHHHHT-TTHHHHHHHHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHHh---CHHHHHHHHH---HHHHcCCCCCCCcHHHHHH
Confidence 35678999999999998887764 5654433333 3333333334445544443
No 265
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=34.90 E-value=2.1e+02 Score=25.75 Aligned_cols=38 Identities=24% Similarity=0.162 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHhhc-CchhH--HHHHHHHHHhhcCCCh
Q psy8267 104 PYVRKTAAHAIPKLYSL-DPEQK--EELVLVIEKLLQDKTT 141 (645)
Q Consensus 104 pyVRK~Aalal~kl~~~-~p~~~--~~~~~~l~~lL~D~~~ 141 (645)
+.+.++|.-|+....+. +++.+ ..+++.+.++|.+++.
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~ 140 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL 140 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH
Confidence 78888888888877763 33333 2477777777755544
No 266
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=34.71 E-value=2.2e+02 Score=27.09 Aligned_cols=116 Identities=16% Similarity=0.089 Sum_probs=68.5
Q ss_pred HHHHHHHHhcccCc----hHHHHHHHHHHHHcCC-CCHHHHHHHHHHHhCC-CccccHHHHHHHHHhhcCCCChHHHHHH
Q psy8267 37 LVYVYLARYAEEQQ----DLALLSISTFQRALKD-PNQLIRASALRVLSSI-RVPMIIPIVMLAIKDSSLDMSPYVRKTA 110 (645)
Q Consensus 37 L~Yl~l~~~~~~~~----dl~lL~iNsl~kDL~~-~N~~iralALr~ls~I-~~~ei~~~l~~~I~~~l~d~~pyVRK~A 110 (645)
+|=-.+...++.++ ++.-.+.|-+.-.-.+ .++++++++.=+-..= -..+-.. -+..+..-+..-.+.+-..=
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~-~l~~~ld~l~~lp~~~a~~l 115 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSS-KLKELLDYLSFLPGDVAIGL 115 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-H-HHHGGGGGTTTS-HHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHH-HHHHHHHHHHhCCHHHHHHH
Confidence 55555555555443 3455677777666555 3567766665443320 0001101 11122233344577777777
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy8267 111 AHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEE 153 (645)
Q Consensus 111 alal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~e 153 (645)
..|+.-+.+..++..+.++-.++|.|-.++......|+..|.+
T Consensus 116 l~Al~PLi~~s~~lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 116 LRALLPLIKFSPSLRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 7788889999999999999999999999998888889888764
No 267
>KOG2011|consensus
Probab=33.73 E-value=3.7e+02 Score=33.32 Aligned_cols=166 Identities=11% Similarity=0.091 Sum_probs=90.9
Q ss_pred HHHHHHHHHH--Hh-C---CChhHHHHHHHHHHHHHhhcccchh--hhhceEE-EcCCCChHHHHHHHHHHHHccCcCCH
Q psy8267 280 VAIIAKALVR--LL-R---SSREVQTVVLTTIASLAVKRRALFV--PYLKSFY-VRSSDPTHVKTLKLELLTTLASETSI 350 (645)
Q Consensus 280 ~~~~~~~L~~--lL-~---s~~niryv~L~~l~~l~~~~p~~~~--~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv 350 (645)
+..+.+.+.+ |+ + -.|+||-+.++.|..=...+|+.|- .|++.+= -+.|....||++.|.+|-.|-..+
T Consensus 280 i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~-- 357 (1048)
T KOG2011|consen 280 IESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKD-- 357 (1048)
T ss_pred HHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhcc--
Confidence 4455555555 23 2 4689999999999999999999884 5888774 678888899999999998877652
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhH-HHHHHHHHHHhhcCCcchHHHHH
Q psy8267 351 ASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVV-AESVVVIKNLLQTQPEAYTDIIR 429 (645)
Q Consensus 351 ~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~-~e~v~~i~~il~~~p~~~~~~i~ 429 (645)
.....|..|.. -|+..+ -.+|.+....+-..+...+.++....+.+. .++..+..-+.-.+|..+..+..
T Consensus 358 -~~~~~L~lFts----RFK~RI----VeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~ 428 (1048)
T KOG2011|consen 358 -EDKDKLELFTS----RFKDRI----VEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGE 428 (1048)
T ss_pred -ccchHHHHHHH----HHHHHH----HHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcchHHHHHH
Confidence 22222222221 133222 222222222222222222222222222333 33334444555566666666666
Q ss_pred HHHHhhccCChHHHHHHHHHHHhcccccCCC
Q psy8267 430 HMVRLSDSITVPTARAAILWLLGEYSHLVPA 460 (645)
Q Consensus 430 ~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~ 460 (645)
.++..+... .+.. -.|.-+.+....++
T Consensus 429 fl~~k~~~~---~a~~-e~~~~~~~~~~~~~ 455 (1048)
T KOG2011|consen 429 FLYKKLFER---VANS-ERVGAEKSLLKAEN 455 (1048)
T ss_pred HHHHHhhcc---ccch-hhhccccccccccc
Confidence 665555332 2222 24555555554443
No 268
>KOG2274|consensus
Probab=33.29 E-value=5.7e+02 Score=31.11 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=57.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHhhcC----------ch-
Q psy8267 57 ISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLD--MSPYVRKTAAHAIPKLYSLD----------PE- 123 (645)
Q Consensus 57 iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d--~~pyVRK~Aalal~kl~~~~----------p~- 123 (645)
++-+.....|+|+.+|+.|=..+......+ .+..++-+.+.+ .+--.|+-|+.-+.|....+ |.
T Consensus 6 ii~~L~~~ls~d~~vr~~AE~~l~qle~~~---~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 6 IIELLSGSLSADQNVRSQAETQLKQLELTE---GFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHHHHHhhcCCChhHHHHHHHHHhccccch---HHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 444555667888888888877666654433 233333344333 35567777776666655421 22
Q ss_pred ----hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC----hhhh
Q psy8267 124 ----QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC----PERI 159 (645)
Q Consensus 124 ----~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~----~~~~ 159 (645)
.+.-..+.+.++|.|++.-+..++.+++..|. |+.|
T Consensus 83 ~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~W 126 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEW 126 (1005)
T ss_pred ccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhh
Confidence 11223445556666777777766666666554 5655
No 269
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=33.13 E-value=67 Score=28.72 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHChhh
Q psy8267 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPER 158 (645)
Q Consensus 129 ~~~l~~lL~D~~~~V~~sav~~l~ei~~~~ 158 (645)
++.+.+-|.|.++.|+..|+.++.+.|++.
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 667778889999999999999999999876
No 270
>KOG2005|consensus
Probab=32.74 E-value=2.4e+02 Score=32.95 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHH
Q psy8267 69 QLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAV 148 (645)
Q Consensus 69 ~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav 148 (645)
+-+-+.|+-+||.=-..+| ....+-..+.-.+|.+||..-+|+.=++--+|... ..+.+.++..|.|+.|..+|+
T Consensus 622 ~avLgiAliAMgeeig~eM---~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~--vlDtLsk~shd~D~eva~naI 696 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGSEM---VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVN--VLDTLSKFSHDGDLEVAMNAI 696 (878)
T ss_pred chhhhhhhhhhhhhhhhHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcch--HHHHHHHhccCcchHHHHHHH
Confidence 4566788888876333333 33444556667799999999999999998999863 567788999999999999999
Q ss_pred HHHHHHCh--hhhhhhHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHhh
Q psy8267 149 MAFEEVCP--ERIDMIHKSYRKLCNLL-VDVDEWGQVFILNMLTRYART 194 (645)
Q Consensus 149 ~~l~ei~~--~~~~li~~~~~kL~~~L-~~~~~W~Qv~iL~lL~~y~r~ 194 (645)
.++.-+.. .+.. +.+..|+|.+.- ++.+-.--++|-+-|..+++.
T Consensus 697 famGLiGAGTnNAR-la~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKG 744 (878)
T KOG2005|consen 697 FAMGLIGAGTNNAR-LAQMLRQLASYYYKDSKALFVVRIAQGLVHLGKG 744 (878)
T ss_pred HHhccccCCcchHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCC
Confidence 88876653 2222 222233333221 455666667777778777754
No 271
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=32.32 E-value=85 Score=23.86 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=27.9
Q ss_pred CCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccc
Q psy8267 535 SPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQ 572 (645)
Q Consensus 535 ~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (645)
-|....+.+++.|.+..+.+++.+... +|.|+...
T Consensus 10 ~Gd~v~Yti~v~N~g~~~a~~v~v~D~---lP~g~~~v 44 (53)
T TIGR01451 10 IGDTITYTITVTNNGNVPATNVVVTDI---LPSGTTFV 44 (53)
T ss_pred CCCEEEEEEEEEECCCCceEeEEEEEc---CCCCCEEE
Confidence 466778899999999999999888654 46677665
No 272
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=32.31 E-value=1.5e+02 Score=26.06 Aligned_cols=64 Identities=17% Similarity=0.027 Sum_probs=43.4
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 96 KDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 96 ~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
.++-++..+---....+-+..+...+++...+....|.+-|.++++-|+.-|+.++..+.....
T Consensus 6 ~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g 69 (115)
T cd00197 6 EKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG 69 (115)
T ss_pred HHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 3444443333333455556666656666667788888899999999999999998887765433
No 273
>PF05536 Neurochondrin: Neurochondrin
Probab=32.12 E-value=5e+02 Score=29.89 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHHHccCcCCH
Q psy8267 329 DPTHVKTLKLELLTTLASETSI 350 (645)
Q Consensus 329 d~~~Ir~~kLdlL~~L~~~~Nv 350 (645)
++..-+..++.+|...|+..++
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~ 90 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPEL 90 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhh
Confidence 4567788888888888875443
No 274
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=30.84 E-value=68 Score=29.04 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHhhcCC
Q psy8267 104 PYVRKTAAHAIPKLYSLD-PEQKEELVLVIEKLLQDK 139 (645)
Q Consensus 104 pyVRK~Aalal~kl~~~~-p~~~~~~~~~l~~lL~D~ 139 (645)
++||.+.+.++..+...+ |+.-+++++.+.+++..+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~ 38 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS 38 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc
Confidence 689999999999999865 777777777777777773
No 275
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=30.65 E-value=2.6e+02 Score=27.64 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=50.4
Q ss_pred HHHHcCCCCHHHHHHHH-HHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHH
Q psy8267 60 FQRALKDPNQLIRASAL-RVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVL 130 (645)
Q Consensus 60 l~kDL~~~N~~iralAL-r~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~ 130 (645)
+.+=..|.|.-.|-.|+ ..+.-++..+ .+.+...+..++.|+.-||+|...-++--+.+.+|+.+..|++
T Consensus 120 l~~W~~s~~~W~rR~ai~~~l~~~~~~~-~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~ 190 (208)
T cd07064 120 MDEWSTDENFWLRRTAILHQLKYKEKTD-TDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVA 190 (208)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34445788886665444 4444444434 3566667788999999999999999999999999998766654
No 276
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=29.35 E-value=86 Score=21.38 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=22.8
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 128 ~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
.++.+.++|.+.++.++..|+.++..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667788888889999999998887664
No 277
>KOG2137|consensus
Probab=28.46 E-value=1.1e+03 Score=28.10 Aligned_cols=123 Identities=24% Similarity=0.256 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCChHHHH-HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhccc-----chhhhhceEEEcCCCChHHH
Q psy8267 262 AVVMAVAQLFHHLAPRREVA-IIAKALVRLLR-SSREVQTVVLTTIASLAVKRRA-----LFVPYLKSFYVRSSDPTHVK 334 (645)
Q Consensus 262 aVv~ea~~~i~~l~~~~~~~-~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~-----~~~~~~~~f~~l~~d~~~Ir 334 (645)
..++|=..++..-.+.+++. .+.+.|.+=+. ++..+|-.+|+.+-.++..-+- .+-|-++.. +....+.++|
T Consensus 368 l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l-~~~tt~~~vk 446 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL-AFKTTNLYVK 446 (700)
T ss_pred hhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc-hhcccchHHH
Confidence 45566667777666655543 46666666564 6679999999988887764432 222344444 4555567888
Q ss_pred HHHHHHHHHccCcCCHHHHHHHHH---HhhccccHHHHHHHHHHHHHHHhhccc
Q psy8267 335 TLKLELLTTLASETSIASILREFQ---TYISSVDKAFVAATVQAIGKCAANIAQ 385 (645)
Q Consensus 335 ~~kLdlL~~L~~~~Nv~~Il~EL~---~yl~~~d~~~~~~~i~~I~~la~k~~~ 385 (645)
.-.|.-+-.+...--.-.+++|++ ...+..|+++.-..++....++.+.+.
T Consensus 447 vn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 447 VNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 887777766663322334555555 445567888888888888888876554
No 278
>KOG1822|consensus
Probab=28.28 E-value=1.4e+03 Score=30.44 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=83.3
Q ss_pred HHHHHHHhhcCCChh----H-HHHHHHHHHHHCh-----hhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcC
Q psy8267 128 LVLVIEKLLQDKTTL----V-VGSAVMAFEEVCP-----ERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFT 197 (645)
Q Consensus 128 ~~~~l~~lL~D~~~~----V-~~sav~~l~ei~~-----~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~ 197 (645)
....+.+.++|+++. | ...++..+..-.| +.+...|++...+-..|...+||.|.+-++.+......
T Consensus 1834 al~vi~e~~~~~~~~~~nevs~l~~i~vf~~sa~~~v~~~~ql~~~~c~~~l~~~L~s~n~~v~~k~~q~l~sif~~--- 1910 (2067)
T KOG1822|consen 1834 ALAVILEALDDSEPTSKNEVSTLLAITVFTLSAPEDVVDDPQLQFQSCINSLKLALNSSNPSVQAKTLQLLPSIFSN--- 1910 (2067)
T ss_pred HHHHHHHhcCCcccccchhhHHHHHHHHHhhcCcccccccHHHHHHHHHHHHHHHhccCChHHHHHHHHhHHHHHhc---
Confidence 344556677754332 1 2233333433334 23445667888888889999999999999988775422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhh--hcCCChHHHHHHHHHHHh--
Q psy8267 198 DPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPL--LQSRNAAVVMAVAQLFHH-- 273 (645)
Q Consensus 198 ~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~l--l~s~n~aVv~ea~~~i~~-- 273 (645)
+.. . .+|.. .++.+-+++...+...... -.....-++-+|++++-.
T Consensus 1911 -~~~-~----------------~~~p~------------i~~~la~vi~~~l~~~d~~~~~s~sel~i~~e~i~~~e~lV 1960 (2067)
T KOG1822|consen 1911 -SND-A----------------NAYPY------------IDYSLAPVIKESLTAEDSNKPKSESELEIVEECIKVLETLV 1960 (2067)
T ss_pred -ccc-c----------------ccccc------------HHHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh
Confidence 110 0 01110 0111223333233222110 000112566677776632
Q ss_pred -cCCh----HHHHHHHHHHHHHhC------CC----hhHHHHHHHHHHHHHhhcccchhh
Q psy8267 274 -LAPR----REVAIIAKALVRLLR------SS----REVQTVVLTTIASLAVKRRALFVP 318 (645)
Q Consensus 274 -l~~~----~~~~~~~~~L~~lL~------s~----~niryv~L~~l~~l~~~~p~~~~~ 318 (645)
.+.+ +-+.-.+..+++|+. +. .+.+-.++++|..+...+|.-|..
T Consensus 1961 ~~~ee~~~~q~~sllIp~llsfl~d~~s~~~~~~~~~~lh~~a~~~L~~i~~~~p~~fKs 2020 (2067)
T KOG1822|consen 1961 DKSEEQKRIQVLSLLIPLLLSFLLDETSLGSHPSYEKKLHEFALQNLLAIGPLYPIEFKS 2020 (2067)
T ss_pred hccchhhhhHHHHHHHHHHHHHhccccccccCchHHHhHHHHHHHHHHHhcCCCcHHHHH
Confidence 2222 112335566777772 22 267788899999888888876653
No 279
>KOG2213|consensus
Probab=27.97 E-value=2.8e+02 Score=30.40 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=63.9
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhc
Q psy8267 20 FPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSS 99 (645)
Q Consensus 20 f~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l 99 (645)
+-.+++.+ -.+...|||+--++-+|++.-|+++--++++-.--..|.+--||--|+|-|-..+..+...-+.+.+-++|
T Consensus 27 y~~il~~~-k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 27 YEGILKAV-KGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLL 105 (460)
T ss_pred HHHHHHHh-hcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHH
Confidence 34455544 34567999999999999999999999999885444456777899999999988888788888888888888
Q ss_pred C
Q psy8267 100 L 100 (645)
Q Consensus 100 ~ 100 (645)
+
T Consensus 106 n 106 (460)
T KOG2213|consen 106 N 106 (460)
T ss_pred H
Confidence 7
No 280
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=27.97 E-value=5.7e+02 Score=24.88 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhh-cccchhhhhc---------------eEE-E-cCCCChHHHHHHHHHHHHccCcC
Q psy8267 297 VQTVVLTTIASLAVK-RRALFVPYLK---------------SFY-V-RSSDPTHVKTLKLELLTTLASET 348 (645)
Q Consensus 297 iryv~L~~l~~l~~~-~p~~~~~~~~---------------~f~-~-l~~d~~~Ir~~kLdlL~~L~~~~ 348 (645)
+|..+|.++..+++. .|..+-.|-. +.+ | +.|..+.+|..++.+|..|-+..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs 71 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS 71 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc
Confidence 566777777777776 4433322221 222 3 34566889999999998876653
No 281
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.71 E-value=3.1e+02 Score=26.69 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=41.6
Q ss_pred cCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccc-cCCC--CcccCCCCceEEEEeEE
Q psy8267 534 ASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQ-PFPE--IASIDPGLAVEVSLGLN 593 (645)
Q Consensus 534 ~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~~~ 593 (645)
..|....+.+++-|.++.+..++++..++ -.++++.+- +..+ +.+|+||+.++..+.+.
T Consensus 35 v~g~~v~V~~~iyN~G~~~A~dV~l~D~~-fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~ 96 (181)
T PF05753_consen 35 VEGEDVTVTYTIYNVGSSAAYDVKLTDDS-FPPEDFELVSGSLSASWERIPPGENVSHSYVVR 96 (181)
T ss_pred cCCcEEEEEEEEEECCCCeEEEEEEECCC-CCccccEeccCceEEEEEEECCCCeEEEEEEEe
Confidence 46777899999999999999999997752 223455543 2222 33999999987555443
No 282
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=27.54 E-value=7.9e+02 Score=26.38 Aligned_cols=110 Identities=21% Similarity=0.326 Sum_probs=64.0
Q ss_pred ChhHHHHHHHHHHHHHhhcccchh----hhhceEE-----EcCCCChHHHHHHHHHHHHcc-CcCCHHHHHHHHHHhhcc
Q psy8267 294 SREVQTVVLTTIASLAVKRRALFV----PYLKSFY-----VRSSDPTHVKTLKLELLTTLA-SETSIASILREFQTYISS 363 (645)
Q Consensus 294 ~~niryv~L~~l~~l~~~~p~~~~----~~~~~f~-----~l~~d~~~Ir~~kLdlL~~L~-~~~Nv~~Il~EL~~yl~~ 363 (645)
.-++.-=+..++..+..+++.+.. .|+..|| ++.++.--.||..|.+|..+. +..|.....+ |+.+
T Consensus 177 ~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~----yi~~ 252 (335)
T PF08569_consen 177 NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR----YISS 252 (335)
T ss_dssp SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH----HTT-
T ss_pred ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH----HHCC
Confidence 346777777777777777765433 3444443 234555556666777666543 3344333222 3322
Q ss_pred ccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHH
Q psy8267 364 VDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMV 432 (645)
Q Consensus 364 ~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~ 432 (645)
...+..++.||++....+.-|+.++++-.+ .||..-..+...|.
T Consensus 253 ------------------------~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV-ANp~K~~~I~~iL~ 296 (335)
T PF08569_consen 253 ------------------------PENLKLMMNLLRDKSKNIQFEAFHVFKVFV-ANPNKPPPIVDILI 296 (335)
T ss_dssp ------------------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH-H-SS-BHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHhcCcchhhhHHHHHHHHHHH-hCCCCChHHHHHHH
Confidence 345777889999999999999999988555 56876666655443
No 283
>KOG2149|consensus
Probab=27.48 E-value=5.8e+02 Score=28.03 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=63.3
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhhcCchhH----HHHHHHHHHhhcCCChhHHHHHHHHHHHH----Chhhhh-hhHH
Q psy8267 94 AIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK----EELVLVIEKLLQDKTTLVVGSAVMAFEEV----CPERID-MIHK 164 (645)
Q Consensus 94 ~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~----~~~~~~l~~lL~D~~~~V~~sav~~l~ei----~~~~~~-li~~ 164 (645)
++..-+.|.+.-|||.|...+..+..-+|+.. -.+.+.+..+..|.+..|......++..+ |++..+ .++-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 34556789999999999999999998889865 35667777888899999988887777653 333322 1222
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHH
Q psy8267 165 SYRKLCNLLVDVDEWGQVFILNMLT 189 (645)
Q Consensus 165 ~~~kL~~~L~~~~~W~Qv~iL~lL~ 189 (645)
...++-..+.-..|-.|.--+.+|.
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~ 166 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLS 166 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHH
Confidence 2233444445555555554443333
No 284
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=27.21 E-value=1e+02 Score=24.92 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=29.4
Q ss_pred ccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccc
Q psy8267 533 LASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQ 572 (645)
Q Consensus 533 ~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (645)
..-|....+.++++|.++.+++++.+... +|.|+...
T Consensus 37 ~~~Gd~v~ytitvtN~G~~~a~nv~v~D~---lp~g~~~v 73 (76)
T PF01345_consen 37 ANPGDTVTYTITVTNTGPAPATNVVVTDT---LPAGLTFV 73 (76)
T ss_pred ccCCCEEEEEEEEEECCCCeeEeEEEEEc---CCCCCEEe
Confidence 34677788999999999999999888665 36677654
No 285
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=26.80 E-value=5.2e+02 Score=30.32 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=42.9
Q ss_pred hcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHH
Q psy8267 98 SSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQD-KTTLVVGSAVMAFEEV 154 (645)
Q Consensus 98 ~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D-~~~~V~~sav~~l~ei 154 (645)
....+++.+|+.+..-+.++....|+.. =...|..+|.+ +.+++.++++.-+-+.
T Consensus 450 ~~~~p~~~lR~~~~~ll~~iL~~~p~~~--rf~~i~dlLe~c~~~~~k~~~I~~lKd~ 505 (633)
T PF08568_consen 450 SVYCPSPELRKIAFTLLTRILHLFPEET--RFKFIRDLLENCPFESLKASAIGWLKDE 505 (633)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHCCcHh--HHHHHHHHHhcCCCHhHHHHHHHHHHHH
Confidence 3467899999999999999999999865 34667777765 6678888887776654
No 286
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=26.59 E-value=5.3e+02 Score=30.78 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCCCc---------cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh--cCchhHHHHHHHHHHhhc
Q psy8267 69 QLIRASALRVLSSIRV---------PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS--LDPEQKEELVLVIEKLLQ 137 (645)
Q Consensus 69 ~~iralALr~ls~I~~---------~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~--~~p~~~~~~~~~l~~lL~ 137 (645)
+.-.--|||.+++|.. .+|-..+.+.|.-.+.++.-|.|..|+..+.++-. +++.+.-+..+-..++|.
T Consensus 430 arq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~ 509 (970)
T COG5656 430 ARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLK 509 (970)
T ss_pred HHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 4444589999999865 12223344555666788999999999999988832 355566677888889999
Q ss_pred CCChhHHHHHHHHHHHH
Q psy8267 138 DKTTLVVGSAVMAFEEV 154 (645)
Q Consensus 138 D~~~~V~~sav~~l~ei 154 (645)
+.+--|..-|.-|+.-.
T Consensus 510 nn~lpv~ieAalAlq~f 526 (970)
T COG5656 510 NNHLPVMIEAALALQFF 526 (970)
T ss_pred cCCcchhhhHHHHHHHH
Confidence 98877877666666533
No 287
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=26.58 E-value=1.8e+02 Score=26.97 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=41.7
Q ss_pred CCceEEEEEEeeCCCCCccceEeeeCCCC---C-CCCcccccCCCCc----------ccCCCCceEEEEeEEecCCCCCC
Q psy8267 536 PRMISVTLRLTNHHGAPLSRVRIDSEGSS---L-GHGMSMQPFPEIA----------SIDPGLAVEVSLGLNLNDSTQPL 601 (645)
Q Consensus 536 ~~~~~~~l~~~N~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~ 601 (645)
+....+..+++|+++.++++..+.++--+ . .....-...+..| .|+||++..-.+-++..+..+.+
T Consensus 61 ~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~~p~~~~~ 140 (149)
T PF09624_consen 61 SESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPYPPYFGNY 140 (149)
T ss_pred ccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecCCccCCCc
Confidence 45557889999999999999998554101 1 1111111112222 28999988877766644444455
Q ss_pred ccEE
Q psy8267 602 SPRL 605 (645)
Q Consensus 602 ~~~~ 605 (645)
.+++
T Consensus 141 ~~~~ 144 (149)
T PF09624_consen 141 NIRV 144 (149)
T ss_pred eEEE
Confidence 5554
No 288
>KOG1087|consensus
Probab=26.04 E-value=3.1e+02 Score=30.97 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=58.9
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhh------hhc
Q psy8267 249 LKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVP------YLK 321 (645)
Q Consensus 249 l~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~------~~~ 321 (645)
=+++.+.+...+=+.-++.+-.|-.-. ..-+.++.+|.+.|+ +.+.++|++|..|..++......|.. .+.
T Consensus 7 dkAT~~~l~~pDWa~NleIcD~IN~~~--~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~ 84 (470)
T KOG1087|consen 7 DKATSESLAEPDWALNLEICDLINSTE--GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLN 84 (470)
T ss_pred HHhhcccccCccHHHHHHHHHHHhcCc--cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344455555566677777666553211 112367788888885 77899999999777777655555542 222
Q ss_pred eEE--EcCC-CChHHHHHHHHHHHH
Q psy8267 322 SFY--VRSS-DPTHVKTLKLELLTT 343 (645)
Q Consensus 322 ~f~--~l~~-d~~~Ir~~kLdlL~~ 343 (645)
.+. .++. .+.-||.+.|.+|..
T Consensus 85 emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 85 EMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHhccccCCcchhHHHHHHHHHHH
Confidence 222 3445 678899999998864
No 289
>KOG1684|consensus
Probab=25.73 E-value=2.3e+02 Score=30.69 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhcccc-HHHHHHHHHHHHH
Q psy8267 329 DPTHVKTLKLELLTTLASETSIASILREFQTYISSVD-KAFVAATVQAIGK 378 (645)
Q Consensus 329 d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d-~~~~~~~i~~I~~ 378 (645)
++......++|++-+--..+++++|+++|.+|-.+.| .+|..+.++.|..
T Consensus 257 ~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k 307 (401)
T KOG1684|consen 257 DESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKK 307 (401)
T ss_pred CccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 3344555688999887788899999999998875443 5688887777753
No 290
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=24.53 E-value=5.2e+02 Score=27.11 Aligned_cols=82 Identities=15% Similarity=0.217 Sum_probs=50.9
Q ss_pred ceeeEeeccc-ccccCCCceEEEEEEeeCCCCCccceEee--eCCCCCCCCcccccCCCCc---ccCCCCceEEEEeEEe
Q psy8267 521 LSALASFSRA-PCLASPRMISVTLRLTNHHGAPLSRVRID--SEGSSLGHGMSMQPFPEIA---SIDPGLAVEVSLGLNL 594 (645)
Q Consensus 521 l~~~~~~~~~-~~~~~~~~~~~~l~~~N~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~ 594 (645)
......|++. ..+.-|+...+-+.|+|++..+++=..+. +.. +...++-++.|.... .++||++.+ +...|
T Consensus 82 adt~~~F~~~~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~-p~d~~~~iqNfTa~~y~~~V~pg~~aT--~~YsF 158 (285)
T PF03896_consen 82 ADTTILFPKPTKKLPAGEPVKFLVGFTNKGSEPFTVESIEASLRY-PQDYSYYIQNFTAVRYNREVPPGEEAT--FPYSF 158 (285)
T ss_pred ceEEEEeccccccccCCCeEEEEEEEEeCCCCCEEEEEEeeeecC-ccccceEEEeecccccCcccCCCCeEE--EEEEE
Confidence 4455677776 33788999999999999998666544442 221 112355555554444 889988877 44445
Q ss_pred cC--CCCCCccEE
Q psy8267 595 ND--STQPLSPRL 605 (645)
Q Consensus 595 ~~--~~~~~~~~~ 605 (645)
.+ .-+|-.|.+
T Consensus 159 ~~~~~l~pr~f~L 171 (285)
T PF03896_consen 159 TPSEELAPRPFGL 171 (285)
T ss_pred ecchhcCCcceEE
Confidence 44 344555554
No 291
>KOG0392|consensus
Probab=24.30 E-value=1.4e+02 Score=37.36 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=79.9
Q ss_pred HHHHcCCCCHHHHHHHHHHHhC---CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcC-----chhHHHHHHH
Q psy8267 60 FQRALKDPNQLIRASALRVLSS---IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD-----PEQKEELVLV 131 (645)
Q Consensus 60 l~kDL~~~N~~iralALr~ls~---I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~-----p~~~~~~~~~ 131 (645)
+-.-+.++...+|..|.|+++. +...|.--.++..+..++.|.+-.+||-++.++.-+...- +-...-++..
T Consensus 821 l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~p 900 (1549)
T KOG0392|consen 821 LFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVP 900 (1549)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhh
Confidence 3444567788888888887765 4566666667777778888889999999988876555321 1122446677
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHChh-----------hh--hhhH--HHHHHHHHHhcC
Q psy8267 132 IEKLLQDKTTLVVGSAVMAFEEVCPE-----------RI--DMIH--KSYRKLCNLLVD 175 (645)
Q Consensus 132 l~~lL~D~~~~V~~sav~~l~ei~~~-----------~~--~li~--~~~~kL~~~L~~ 175 (645)
+..+++|.+..|.-+|..+|..+.|- .. +++. .-.++.++.|-+
T Consensus 901 llr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlld 959 (1549)
T KOG0392|consen 901 LLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLD 959 (1549)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcC
Confidence 77889999999999988888877631 11 2332 346777777754
No 292
>KOG3060|consensus
Probab=23.96 E-value=4.4e+02 Score=27.35 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=56.2
Q ss_pred cCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHH
Q psy8267 48 EQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE 127 (645)
Q Consensus 48 ~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~ 127 (645)
...++|--++|+++.-+-.++-..+--|.+.=++=...+-.+....-+.+-=.|..+|+||-|+ .|---+.-+.+++
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAi---lka~GK~l~aIk~ 142 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAI---LKAQGKNLEAIKE 142 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHH---HHHcCCcHHHHHH
Confidence 4467899999999999955555555444443333334443344332222222334778888764 4444456677888
Q ss_pred HHHHHHHhhcCCCh
Q psy8267 128 LVLVIEKLLQDKTT 141 (645)
Q Consensus 128 ~~~~l~~lL~D~~~ 141 (645)
+.+.+..++.|.+.
T Consensus 143 ln~YL~~F~~D~EA 156 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEA 156 (289)
T ss_pred HHHHHHHhcCcHHH
Confidence 99999999988653
No 293
>KOG4524|consensus
Probab=23.89 E-value=3.1e+02 Score=33.48 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHHHHH---HhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 86 MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPK---LYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~pyVRK~Aalal~k---l~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
+|+..++.-.+..++|++-.+|=+|..++.- +...+++.. ..| +-+...+.++||.++..|+..+..++..
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W-~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTW-PSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhh-hHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 5677777788889999999999999888643 334455542 245 4455677788999999999999988876
Q ss_pred hhhhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy8267 158 RIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188 (645)
Q Consensus 158 ~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL 188 (645)
.-+++.+-+ +.+.=||..-.+.+..
T Consensus 878 sgDFv~sR~------l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 878 SGDFVASRF------LEDVLPWLKHLCQDSF 902 (1014)
T ss_pred hhhHHHHHH------HHHHHHHHHHHHHHHH
Confidence 666653322 3345566655555444
No 294
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=23.88 E-value=1.8e+03 Score=29.60 Aligned_cols=231 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHhcC----ChHH------HHHHHHHHHHHh--CCChhHHHHHHHHHHHHHhhcccchhhhhceEE-
Q psy8267 258 SRNAAVVMAVAQLFHHLA----PRRE------VAIIAKALVRLL--RSSREVQTVVLTTIASLAVKRRALFVPYLKSFY- 324 (645)
Q Consensus 258 s~n~aVv~ea~~~i~~l~----~~~~------~~~~~~~L~~lL--~s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~- 324 (645)
+.|..|.+-|+..+-.++ ..++ -+.+-+++...+ +.+.++|-.+|+++..|...+.+-+..=-+.+|
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Q ss_pred EcC----CCChHHHHHHHHHHHHccCc----------CCHHHHHHHHHHhhccc-cHHHHHHHHHHHHHHHhhcccc---
Q psy8267 325 VRS----SDPTHVKTLKLELLTTLASE----------TSIASILREFQTYISSV-DKAFVAATVQAIGKCAANIAQV--- 386 (645)
Q Consensus 325 ~l~----~d~~~Ir~~kLdlL~~L~~~----------~Nv~~Il~EL~~yl~~~-d~~~~~~~i~~I~~la~k~~~~--- 386 (645)
++. ++...+-+.+-+.+-.++++ ++....|+-|.+|.... |.++.-.++.-+..|+.++...
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~ 1307 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLG 1307 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccc
Q ss_pred -------------------------------------HHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHH---
Q psy8267 387 -------------------------------------TDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTD--- 426 (645)
Q Consensus 387 -------------------------------------~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~--- 426 (645)
.--.+..+.++.......|..-++.++-+++..+......
T Consensus 1308 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W 1387 (1780)
T PLN03076 1308 SSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLW 1387 (1780)
T ss_pred ccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHH
Q ss_pred ------HHHHHHHhhc-----------------------------cCChHHHHHHHHHHHhcccccCCCchHHHHHHHHH
Q psy8267 427 ------IIRHMVRLSD-----------------------------SITVPTARAAILWLLGEYSHLVPALGPDVLRKAAI 471 (645)
Q Consensus 427 ------~i~~L~~~l~-----------------------------~i~~~~ak~~~iwilGEy~~~i~~~~~diLr~l~~ 471 (645)
++.-+++.+. .-+-..|...++=++..|-+.+...-+++|..+..
T Consensus 1388 ~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ 1467 (1780)
T PLN03076 1388 ERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVS 1467 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcCCchHHHHHHHHhh
Q psy8267 472 TFVNEEDIVKLQVLNLA 488 (645)
Q Consensus 472 ~f~~e~~~vk~~iL~~~ 488 (645)
..-.+++..=..-.+++
T Consensus 1468 ci~q~n~~la~ig~~~l 1484 (1780)
T PLN03076 1468 FIKRPHQSLAGIGIAAF 1484 (1780)
T ss_pred HHcCchHHHHHHHHHHH
No 295
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=23.45 E-value=5.2e+02 Score=22.83 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhH-HHHHHHHHHHhhcC
Q psy8267 350 IASILREFQTYIS-SVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVV-AESVVVIKNLLQTQ 420 (645)
Q Consensus 350 v~~Il~EL~~yl~-~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~-~e~v~~i~~il~~~ 420 (645)
+..++.-+.+-+. +...|++..+---++.++.|.+-..+..-..+-.++......-. .+++..+..+.+.+
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4456666666666 66778998888889999998876654433333334444433333 67777888888766
No 296
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=23.41 E-value=2e+02 Score=25.00 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=31.1
Q ss_pred cHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh
Q psy8267 87 IIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ 124 (645)
Q Consensus 87 i~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~ 124 (645)
.++.++..+..++.|-+|.||.-|..-+--+.+.+|+.
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 35677788888899999999999888887777888876
No 297
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.35 E-value=8.7e+02 Score=25.40 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=39.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH----HHHHHHHHhhc----CCChhHHHHHHHHHHHHC
Q psy8267 92 MLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE----ELVLVIEKLLQ----DKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 92 ~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~----~~~~~l~~lL~----D~~~~V~~sav~~l~ei~ 155 (645)
..+..+.+..+++|++-+|+..+.++....+.... ++.+.+.+.|. .++..+...|+.++.++.
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 34445688889999999999999999987665322 34444444444 455666677777777775
No 298
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=23.28 E-value=1.7e+02 Score=37.20 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=26.4
Q ss_pred ccCCCceEEEEEEeeCCCCCccceEeeeC
Q psy8267 533 LASPRMISVTLRLTNHHGAPLSRVRIDSE 561 (645)
Q Consensus 533 ~~~~~~~~~~l~~~N~~~~~~~~~~~~~~ 561 (645)
+|.|....+.+++.|+|..|+..+.+...
T Consensus 795 lleGE~~~~~ItL~N~S~~pvd~l~~sf~ 823 (1185)
T PF08626_consen 795 LLEGEKQTFTITLRNTSSVPVDFLSFSFQ 823 (1185)
T ss_pred EECCcEEEEEEEEEECCccccceEEEEEE
Confidence 58999999999999999999999999754
No 299
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=23.02 E-value=3.9e+02 Score=29.10 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHhCCCccc---------------cH----HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhc-CchhH
Q psy8267 66 DPNQLIRASALRVLSSIRVPM---------------II----PIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL-DPEQK 125 (645)
Q Consensus 66 ~~N~~iralALr~ls~I~~~e---------------i~----~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~-~p~~~ 125 (645)
+.|.--+-.||+.++++.... +. ..+.+.+. .-.+..|++|-.|+-.+...-.. .+++.
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l 344 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL 344 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH
Confidence 345566678888877652221 12 22234443 33366899998888877766554 45567
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHH
Q psy8267 126 EELVLVIEKLLQDKTTLVVGSAVM 149 (645)
Q Consensus 126 ~~~~~~l~~lL~D~~~~V~~sav~ 149 (645)
.+.++.+..+|.+++..|..=|..
T Consensus 345 ~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 345 LQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhhhh
Confidence 788999999999998877664433
No 300
>KOG4535|consensus
Probab=22.97 E-value=2e+02 Score=32.27 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHhCC-------CccccHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHhhcCch-------hHHHH
Q psy8267 67 PNQLIRASALRVLSSI-------RVPMIIPIVMLAIKDSSLD----MSPYVRKTAAHAIPKLYSLDPE-------QKEEL 128 (645)
Q Consensus 67 ~N~~iralALr~ls~I-------~~~ei~~~l~~~I~~~l~d----~~pyVRK~Aalal~kl~~~~p~-------~~~~~ 128 (645)
.|.-+++.|.|+|++. -.....+.+..++.+++.- ..--||-.|++++..+++ +|. .....
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk-n~a~~lq~~~wA~~~ 574 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK-NPALPLQTAPWASQA 574 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc-CccccccCCCchHHH
Confidence 4678999999999984 2333444445555555432 266799999999999995 333 23567
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHHHC
Q psy8267 129 VLVIEKLLQD-KTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 129 ~~~l~~lL~D-~~~~V~~sav~~l~ei~ 155 (645)
++.+..|+.| +|--|...|..++....
T Consensus 575 F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 575 FNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 7788888876 78888888888876443
No 301
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=22.76 E-value=5.9e+02 Score=24.16 Aligned_cols=83 Identities=12% Similarity=0.214 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHH---HHHHhhccCChhhHHHH
Q psy8267 333 VKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLT---GLVSLLSYSDEAVVAES 409 (645)
Q Consensus 333 Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~---~ll~LL~~~~~~v~~e~ 409 (645)
=|..+|+....+-..++++..++.+... .|..+..+++..+......--...+.|.+ .+-.+|.+.-+....-+
T Consensus 13 ~R~~~L~~v~~~W~~~~~k~ai~~~~~~---~D~svlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~a 89 (164)
T PF13925_consen 13 SRLTNLQVVRTFWRRNDIKGAIEYAVRM---NDPSVLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVA 89 (164)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHhc---CCchHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3778888888888888888888766554 56666666655444222222222233333 33445555544433444
Q ss_pred HHHHHHHhh
Q psy8267 410 VVVIKNLLQ 418 (645)
Q Consensus 410 v~~i~~il~ 418 (645)
...++.|+.
T Consensus 90 L~~L~~i~~ 98 (164)
T PF13925_consen 90 LEMLRSILK 98 (164)
T ss_pred HHHHHHHHH
Confidence 444444444
No 302
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=6.4e+02 Score=29.03 Aligned_cols=89 Identities=19% Similarity=0.110 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHhCCC-ccccHHHH-HHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChh
Q psy8267 65 KDPNQLIRASALRVLSSIR-VPMIIPIV-MLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTL 142 (645)
Q Consensus 65 ~~~N~~iralALr~ls~I~-~~ei~~~l-~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~ 142 (645)
++....+..+|+-..+-|. .+++...+ ...+-..+.-.+|.+||.--+|..-++..+|+.. .++.+.+...|.+..
T Consensus 614 k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~--vfDtL~r~shd~dl~ 691 (881)
T COG5110 614 KNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMN--VFDTLERSSHDGDLN 691 (881)
T ss_pred hhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchH--HHHHHHHhccccchh
Confidence 3334566666655544442 23333332 3333333444599999999999999998999863 567788999999999
Q ss_pred HHHHHHHHHHHHC
Q psy8267 143 VVGSAVMAFEEVC 155 (645)
Q Consensus 143 V~~sav~~l~ei~ 155 (645)
|..+++.++.-+.
T Consensus 692 v~~ntIfamGLiG 704 (881)
T COG5110 692 VIINTIFAMGLIG 704 (881)
T ss_pred HHHHHHHHhhccc
Confidence 9999988876554
No 303
>KOG2038|consensus
Probab=20.74 E-value=2.9e+02 Score=32.85 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=75.6
Q ss_pred cCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC--CccccHHHHHHHHHhhcCCCChHH
Q psy8267 29 SKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI--RVPMIIPIVMLAIKDSSLDMSPYV 106 (645)
Q Consensus 29 s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I--~~~ei~~~l~~~I~~~l~d~~pyV 106 (645)
+++..-|.|...|+..++.. +-.-.|-.+.--..|+=+.++.-||.++..+ .-||=-..+...+..-+.|+..-+
T Consensus 281 ~~~~~~k~Ll~WyfE~~LK~---ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKi 357 (988)
T KOG2038|consen 281 NKRLRDKILLMWYFEHELKI---LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKI 357 (988)
T ss_pred ccccccceehHHHHHHHHHH---HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhh
Confidence 44445555555555555432 1223344444444667788888888888765 345555667777788888888888
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhH
Q psy8267 107 RKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLV 143 (645)
Q Consensus 107 RK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V 143 (645)
-.+|..-+..|...+|.+.--.++.|.+++--++.+-
T Consensus 358 askAsylL~~L~~~HPnMK~Vvi~EIer~~FRpn~~~ 394 (988)
T KOG2038|consen 358 ASKASYLLEGLLAKHPNMKIVVIDEIERLAFRPNVSE 394 (988)
T ss_pred hhhHHHHHHHHHhhCCcceeehHHHHHHHHcccCccc
Confidence 8888888888888888877667777888777666554
No 304
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=20.69 E-value=1.4e+02 Score=26.29 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.1
Q ss_pred cCCCChHHHHHHHHHHHHHhhcCchh
Q psy8267 99 SLDMSPYVRKTAAHAIPKLYSLDPEQ 124 (645)
Q Consensus 99 l~d~~pyVRK~Aalal~kl~~~~p~~ 124 (645)
..|.+||+|--|+.|+-.+..-+|+-
T Consensus 39 iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 39 IDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred CCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 35569999999999999999888764
No 305
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=20.40 E-value=2.2e+02 Score=31.21 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=49.9
Q ss_pred CCCCCccceEeeeCCCCCCCCccccc-CCCCcccCCCCceEEEEeEEecCCCCCCccEE----eecccCCCCCc--cceE
Q psy8267 548 HHGAPLSRVRIDSEGSSLGHGMSMQP-FPEIASIDPGLAVEVSLGLNLNDSTQPLSPRL----VWGVEGEDGLS--APLK 620 (645)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~ 620 (645)
++...++++++.+.. ..| +.... .-.++.+.|+.+..+.+.+-......|.+.++ +|. +..|.. .+-+
T Consensus 8 ~~~~~~~~v~v~v~~-~~P--l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~pssl~v~v~asy~--~~~G~~rv~~~~ 82 (377)
T PF14728_consen 8 KSRSTLENVQVSVVV-DPP--LACSQDTFVFENISPGSSQTVEISFYVSGSLPPSSLEVTVVASYT--TPTGIPRVVQCT 82 (377)
T ss_pred ecceeeEeeEEEEEe-CCC--EeecCCeEEEEecCCCCcEEEEEEEEeCCCcCCccceEEEEEEEE--CCCccceeeEEE
Confidence 344666766665552 113 33331 22345888888877777766666666665544 574 444543 4778
Q ss_pred eeCCcccccccccC
Q psy8267 621 LSAPVGEWLRAVTM 634 (645)
Q Consensus 621 l~~pv~~~~~~~~~ 634 (645)
+++|...+.+|++-
T Consensus 83 ~~LPL~L~~~~~~p 96 (377)
T PF14728_consen 83 FDLPLKLVCRPCQP 96 (377)
T ss_pred EEechhheEEccCC
Confidence 99999888777653
Done!