Query psy8267
Match_columns 645
No_of_seqs 292 out of 1316
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 22:58:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 100.0 6.7E-78 2.3E-82 690.4 30.8 478 2-517 58-619 (621)
2 2vgl_B AP-2 complex subunit be 100.0 1.6E-73 5.4E-78 651.6 41.9 485 2-533 33-582 (591)
3 1w63_A Adapter-related protein 100.0 1.1E-70 3.7E-75 631.2 30.2 450 2-493 54-540 (618)
4 3tjz_B Coatomer subunit gamma; 100.0 5.7E-50 1.9E-54 424.7 13.7 296 2-348 47-355 (355)
5 1b3u_A Protein (protein phosph 99.7 6.8E-14 2.3E-18 157.0 32.1 423 26-489 134-583 (588)
6 1b3u_A Protein (protein phosph 99.6 7.8E-13 2.7E-17 148.3 29.3 429 19-492 88-547 (588)
7 4fdd_A Transportin-1; heat rep 99.5 1.3E-11 4.4E-16 146.0 38.4 243 247-490 174-468 (852)
8 2vgl_B AP-2 complex subunit be 99.5 4.6E-12 1.6E-16 144.0 29.4 370 24-444 92-520 (591)
9 1w63_A Adapter-related protein 99.5 6.3E-12 2.1E-16 143.7 26.5 394 17-477 9-435 (618)
10 4fdd_A Transportin-1; heat rep 99.5 1.4E-10 4.8E-15 137.1 37.4 392 21-454 51-513 (852)
11 2jdq_A Importin alpha-1 subuni 99.4 7.4E-11 2.5E-15 127.9 27.5 326 55-421 20-393 (450)
12 1ibr_B P95, importin beta-1 su 99.3 3.4E-10 1.2E-14 122.7 28.0 351 59-459 5-440 (462)
13 4b8j_A Importin subunit alpha- 99.3 3.1E-10 1.1E-14 126.5 27.6 361 54-457 73-497 (528)
14 2bpt_A Importin beta-1 subunit 99.3 5.1E-09 1.7E-13 122.9 38.9 426 20-489 6-525 (861)
15 1qgr_A Protein (importin beta 99.3 2.9E-09 9.8E-14 125.2 36.6 417 30-489 340-867 (876)
16 2jdq_A Importin alpha-1 subuni 99.3 7E-10 2.4E-14 120.2 28.1 324 20-384 22-393 (450)
17 1oyz_A Hypothetical protein YI 99.3 1.5E-10 5.1E-15 118.2 21.3 128 56-188 24-152 (280)
18 1qgr_A Protein (importin beta 99.3 2.5E-08 8.7E-13 117.1 43.1 142 14-155 124-287 (876)
19 1u6g_C TIP120 protein, CAND1; 99.3 4E-09 1.4E-13 129.5 37.3 429 17-489 5-544 (1230)
20 1wa5_B Importin alpha subunit; 99.3 2.3E-10 7.8E-15 127.8 24.1 325 56-421 88-460 (530)
21 1u6g_C TIP120 protein, CAND1; 99.3 1.1E-09 3.9E-14 134.4 32.1 429 18-489 48-594 (1230)
22 2bpt_A Importin beta-1 subunit 99.3 2E-08 7E-13 117.7 40.8 400 17-459 38-532 (861)
23 1wa5_B Importin alpha subunit; 99.3 9.1E-10 3.1E-14 122.9 27.5 328 16-384 85-460 (530)
24 2vgl_A Adaptor protein complex 99.2 8.8E-10 3E-14 126.0 26.2 393 34-485 59-497 (621)
25 3hs8_A Adaptor protein complex 99.2 7.9E-12 2.7E-16 127.4 7.8 105 534-642 65-174 (273)
26 2z6g_A B-catenin; FULL-length, 99.2 9.7E-10 3.3E-14 129.0 25.3 358 57-456 117-518 (780)
27 1kyf_A Alpha-adaptin C; protei 99.2 2.4E-11 8.4E-16 122.5 8.6 104 534-642 39-148 (247)
28 4b8j_A Importin subunit alpha- 99.1 1.2E-08 4.1E-13 113.6 28.3 326 18-384 74-446 (528)
29 1oyz_A Hypothetical protein YI 99.1 9.9E-09 3.4E-13 104.6 24.2 161 19-191 24-186 (280)
30 3now_A UNC-45 protein, SD10334 99.1 1.4E-07 4.8E-12 109.8 36.3 413 27-456 256-737 (810)
31 3ul1_B Importin subunit alpha- 99.1 1.2E-07 4E-12 105.7 33.0 323 56-419 58-431 (510)
32 1jdh_A Beta-catenin; beta-cate 99.1 1.4E-07 4.6E-12 104.4 32.9 426 18-488 17-525 (529)
33 3ltm_A Alpha-REP4; protein eng 99.1 6.5E-09 2.2E-13 101.3 18.8 184 57-312 21-205 (211)
34 3now_A UNC-45 protein, SD10334 99.0 9.6E-08 3.3E-12 111.1 30.7 396 18-457 290-786 (810)
35 2z6g_A B-catenin; FULL-length, 99.0 4.9E-08 1.7E-12 114.5 27.6 389 19-453 116-556 (780)
36 3ltj_A Alpharep-4; protein eng 99.0 1.9E-08 6.5E-13 97.2 19.6 182 56-309 15-197 (201)
37 2z6h_A Catenin beta-1, beta-ca 99.0 6.2E-07 2.1E-11 102.6 35.2 430 15-489 10-523 (644)
38 1jdh_A Beta-catenin; beta-cate 99.0 4.9E-08 1.7E-12 108.0 25.2 360 50-453 12-423 (529)
39 3tjz_B Coatomer subunit gamma; 99.0 7.1E-09 2.4E-13 109.7 17.4 286 34-410 48-345 (355)
40 3tpo_A Importin subunit alpha- 99.0 4.1E-07 1.4E-11 101.6 30.6 323 56-419 77-450 (529)
41 3ul1_B Importin subunit alpha- 98.9 1.7E-06 5.7E-11 96.3 31.8 323 17-380 56-429 (510)
42 2z6h_A Catenin beta-1, beta-ca 98.9 7.8E-07 2.7E-11 101.8 29.6 325 90-456 14-382 (644)
43 1ibr_B P95, importin beta-1 su 98.8 5.5E-07 1.9E-11 97.3 25.9 175 19-194 36-247 (462)
44 3ltm_A Alpha-REP4; protein eng 98.8 1.6E-07 5.6E-12 91.2 19.5 188 15-276 16-203 (211)
45 3ltj_A Alpharep-4; protein eng 98.8 1.6E-07 5.4E-12 90.6 19.0 154 17-192 13-166 (201)
46 3tpo_A Importin subunit alpha- 98.8 6.9E-06 2.4E-10 91.7 34.3 324 16-380 74-448 (529)
47 2g30_A AP-2 complex subunit be 98.8 1.9E-08 6.6E-13 101.6 11.5 123 509-643 34-162 (258)
48 4hxt_A De novo protein OR329; 98.7 1.6E-06 5.4E-11 85.7 23.1 219 57-316 4-247 (252)
49 4db6_A Armadillo repeat protei 98.6 1.7E-06 5.7E-11 83.6 18.0 181 12-192 6-208 (210)
50 4hxt_A De novo protein OR329; 98.5 1.3E-05 4.6E-10 78.9 23.4 175 19-193 3-199 (252)
51 4db8_A Armadillo-repeat protei 98.5 4E-06 1.4E-10 83.3 19.6 178 15-192 9-208 (252)
52 1wa5_C Importin alpha RE-expor 98.4 0.00026 8.9E-09 84.6 33.5 405 23-491 10-523 (960)
53 3b2a_A TON_1937, putative unch 98.4 5.6E-06 1.9E-10 81.0 14.8 190 127-359 33-231 (265)
54 1te4_A Conserved protein MTH18 98.3 3E-07 1E-11 82.9 5.0 115 21-152 15-129 (131)
55 1te4_A Conserved protein MTH18 98.3 3.5E-07 1.2E-11 82.5 5.4 116 57-189 14-129 (131)
56 1xm9_A Plakophilin 1; armadill 98.3 0.00024 8.3E-09 77.7 27.8 128 328-456 295-449 (457)
57 4db8_A Armadillo-repeat protei 98.3 1.3E-05 4.4E-10 79.5 16.1 174 18-191 54-249 (252)
58 3l6x_A Catenin delta-1; cateni 98.2 0.00069 2.4E-08 76.2 29.7 99 93-191 51-161 (584)
59 2qk2_A LP04448P; mini spindles 98.2 7.3E-05 2.5E-09 74.2 19.5 200 86-340 11-229 (242)
60 2qk2_A LP04448P; mini spindles 98.2 4.5E-05 1.5E-09 75.8 16.4 177 14-193 10-205 (242)
61 4db6_A Armadillo repeat protei 98.1 0.00013 4.4E-09 70.2 18.8 135 58-192 15-166 (210)
62 3l6x_A Catenin delta-1; cateni 98.0 0.0028 9.6E-08 71.2 29.4 130 328-457 320-477 (584)
63 2db0_A 253AA long hypothetical 98.0 0.00076 2.6E-08 63.6 20.2 209 90-380 32-245 (253)
64 1xm9_A Plakophilin 1; armadill 97.9 0.0026 8.9E-08 69.4 26.6 116 58-173 5-136 (457)
65 3opb_A SWI5-dependent HO expre 97.9 0.0013 4.4E-08 75.6 24.4 86 69-155 308-405 (778)
66 2qk1_A Protein STU2; STU2P, XM 97.9 0.0004 1.4E-08 69.7 18.0 201 94-342 20-246 (249)
67 4ady_A RPN2, 26S proteasome re 97.9 0.0081 2.8E-07 70.5 30.8 324 8-399 348-698 (963)
68 3nmz_A APC variant protein; pr 97.9 0.0032 1.1E-07 68.9 25.8 281 103-424 95-456 (458)
69 1wa5_C Importin alpha RE-expor 97.8 0.0028 9.4E-08 75.7 26.4 125 32-156 375-525 (960)
70 3opb_A SWI5-dependent HO expre 97.8 0.012 4E-07 67.8 29.5 376 65-455 266-730 (778)
71 2qk1_A Protein STU2; STU2P, XM 97.8 0.00058 2E-08 68.5 16.4 170 24-193 22-220 (249)
72 2x19_B Importin-13; nuclear tr 97.7 0.011 3.8E-07 70.2 29.5 167 22-192 28-230 (963)
73 1xqr_A HSPBP1 protein; armadil 97.6 0.0013 4.5E-08 67.7 16.2 179 14-193 24-238 (296)
74 3nmw_A APC variant protein; AR 97.5 0.0043 1.5E-07 65.6 19.9 252 65-425 42-341 (354)
75 2x1g_F Cadmus; transport prote 97.5 0.0048 1.6E-07 73.6 22.1 127 24-155 13-156 (971)
76 1xqr_A HSPBP1 protein; armadil 97.4 0.0012 4.2E-08 68.0 13.1 140 18-157 81-239 (296)
77 3nmz_A APC variant protein; pr 97.3 0.016 5.5E-07 63.2 21.7 131 257-387 297-456 (458)
78 2db0_A 253AA long hypothetical 97.3 0.0031 1.1E-07 59.5 13.2 163 29-192 81-245 (253)
79 4ady_A RPN2, 26S proteasome re 97.2 0.11 3.8E-06 61.0 28.3 302 15-377 389-715 (963)
80 3b2a_A TON_1937, putative unch 96.9 0.0044 1.5E-07 60.8 10.4 126 64-192 84-217 (265)
81 3m1i_C Exportin-1; heat repeat 96.9 0.21 7E-06 60.1 27.7 126 22-152 20-162 (1049)
82 2x1g_F Cadmus; transport prote 96.9 1.2 4.2E-05 52.7 33.8 124 67-193 476-615 (971)
83 3nmw_A APC variant protein; AR 96.6 0.14 4.6E-06 53.9 20.5 211 67-315 96-339 (354)
84 3a6p_A Exportin-5; exportin-5, 96.5 2.4 8.2E-05 51.7 33.9 138 14-155 4-161 (1204)
85 2x19_B Importin-13; nuclear tr 96.5 2.1 7.1E-05 50.5 34.0 322 56-420 446-848 (963)
86 3gs3_A Symplekin, LD45768P; he 96.5 0.61 2.1E-05 46.6 23.0 125 70-194 30-174 (257)
87 3mnm_A ADP-ribosylation factor 96.4 0.017 5.7E-07 51.4 9.7 83 519-609 18-107 (123)
88 3zy7_A AP-1 complex subunit ga 96.4 0.017 5.9E-07 51.2 9.8 84 519-609 14-102 (122)
89 3o2t_A Symplekin; heat repeat, 96.3 0.38 1.3E-05 50.9 21.0 124 71-194 41-184 (386)
90 4ffb_C Protein STU2; tubulin f 96.1 0.099 3.4E-06 52.6 15.3 169 95-310 14-212 (278)
91 3ibv_A Exportin-T; karyopherin 95.9 0.53 1.8E-05 56.2 22.6 122 35-157 416-567 (980)
92 3m1i_C Exportin-1; heat repeat 95.9 2.8 9.5E-05 50.2 29.1 103 55-157 451-570 (1049)
93 1gyu_A Adapter-related protein 95.8 0.051 1.8E-06 49.3 10.0 83 521-609 33-120 (140)
94 1iu1_A Gamma1-adaptin; coated 95.7 0.058 2E-06 49.4 10.0 83 521-609 39-126 (146)
95 4hat_C Exportin-1; heat repeat 95.5 1.2 4.1E-05 53.4 23.6 142 51-192 447-617 (1023)
96 3grl_A General vesicular trans 95.4 4.6 0.00016 45.4 28.9 147 27-175 31-219 (651)
97 4ffb_C Protein STU2; tubulin f 95.4 0.13 4.4E-06 51.8 12.7 135 21-155 58-211 (278)
98 2e9g_A AP-1 complex subunit ga 95.2 0.069 2.4E-06 47.9 8.8 84 519-609 23-111 (131)
99 1lrv_A LRV, leucine-rich repea 95.2 0.023 7.9E-07 56.7 6.2 184 63-377 58-242 (244)
100 3l9t_A Putative uncharacterize 95.2 0.11 3.7E-06 51.2 10.7 138 14-162 67-213 (240)
101 3ibv_A Exportin-T; karyopherin 94.5 11 0.00037 44.9 31.4 111 29-141 19-142 (980)
102 1lsh_A Lipovitellin (LV-1N, LV 94.4 0.34 1.2E-05 58.3 14.6 126 31-159 408-546 (1056)
103 1p4u_A ADP-ribosylation factor 94.4 0.26 8.9E-06 45.3 10.5 85 521-609 37-130 (153)
104 2iw3_A Elongation factor 3A; a 93.7 2.3 7.8E-05 50.4 19.3 209 56-310 96-324 (986)
105 3u0r_A Apoptosis inhibitor 5; 93.7 2.1 7.1E-05 46.3 17.2 145 293-440 40-191 (507)
106 3tt9_A Plakophilin-2; cell adh 93.1 0.2 6.7E-06 49.5 7.7 99 57-155 10-123 (233)
107 3l9t_A Putative uncharacterize 93.0 2.3 7.8E-05 41.8 15.0 155 327-496 81-238 (240)
108 2of3_A ZYG-9; multifunctional 93.0 1.2 4.3E-05 44.6 13.6 160 292-454 57-234 (266)
109 3u0r_A Apoptosis inhibitor 5; 92.9 1.5 5.2E-05 47.3 14.8 115 19-134 30-145 (507)
110 3oc3_A Helicase MOT1, MOT1; re 92.6 1.7 5.7E-05 48.0 14.4 235 19-305 175-431 (800)
111 4hat_C Exportin-1; heat repeat 92.5 22 0.00075 42.4 28.4 120 74-193 435-569 (1023)
112 2iw3_A Elongation factor 3A; a 92.3 23 0.00077 42.0 28.0 286 29-362 26-355 (986)
113 3grl_A General vesicular trans 92.1 18 0.00063 40.6 28.5 31 164-194 122-152 (651)
114 2of3_A ZYG-9; multifunctional 91.7 0.7 2.4E-05 46.4 9.9 102 53-157 130-237 (266)
115 3gjx_A Exportin-1; transport, 90.8 17 0.0006 43.5 22.3 138 55-192 477-643 (1073)
116 3tt9_A Plakophilin-2; cell adh 90.3 4.3 0.00015 39.8 13.9 141 15-156 5-180 (233)
117 1ho8_A Vacuolar ATP synthase s 88.8 29 0.00099 37.5 27.6 122 364-489 333-472 (480)
118 1lsh_A Lipovitellin (LV-1N, LV 88.5 14 0.00049 44.2 19.3 84 296-382 493-577 (1056)
119 3gs3_A Symplekin, LD45768P; he 87.7 5.8 0.0002 39.5 12.8 138 16-153 10-170 (257)
120 2b6c_A Hypothetical protein EF 86.9 3.2 0.00011 40.2 10.3 149 23-185 60-212 (220)
121 3ldz_A STAM-1, signal transduc 84.8 19 0.00064 32.1 13.5 111 246-386 8-119 (140)
122 1vsy_5 Proteasome activator BL 83.7 0.99 3.4E-05 53.8 5.7 173 20-194 762-967 (997)
123 4gmo_A Putative uncharacterize 81.7 11 0.00039 42.7 13.5 62 95-157 39-106 (684)
124 3a6p_A Exportin-5; exportin-5, 80.3 1.1E+02 0.0038 37.0 27.4 118 68-192 26-161 (1204)
125 1lrv_A LRV, leucine-rich repea 79.5 1.8 6.2E-05 42.8 5.0 69 60-152 151-219 (244)
126 1t06_A Hypothetical protein; s 79.4 3.9 0.00013 40.1 7.4 60 101-160 119-184 (235)
127 3o2t_A Symplekin; heat repeat, 79.1 67 0.0023 33.7 23.2 240 86-399 22-274 (386)
128 3g2s_A C-terminal fragment of 78.7 37 0.0013 30.6 13.2 118 246-388 14-133 (149)
129 2b6c_A Hypothetical protein EF 76.6 5.7 0.00019 38.4 7.5 70 60-129 129-198 (220)
130 1x5b_A Signal transducing adap 76.2 37 0.0013 31.1 12.6 73 246-320 18-91 (163)
131 3jxy_A Alkylpurine DNA glycosy 75.2 16 0.00053 35.5 10.4 155 21-189 64-223 (232)
132 3jxy_A Alkylpurine DNA glycosy 72.4 9 0.00031 37.3 7.9 70 61-130 137-206 (232)
133 3oc3_A Helicase MOT1, MOT1; re 72.1 18 0.00062 40.1 10.5 126 27-155 272-403 (800)
134 3zyq_A Hepatocyte growth facto 69.7 56 0.0019 31.5 12.9 73 246-320 11-84 (226)
135 4gmo_A Putative uncharacterize 66.8 13 0.00045 42.2 8.8 62 22-83 38-104 (684)
136 1juq_A ADP-ribosylation factor 65.2 85 0.0029 28.8 14.2 73 246-320 16-89 (171)
137 4atg_A TAF6; transcription, TF 64.5 59 0.002 30.7 11.4 94 82-175 79-182 (196)
138 1mhq_A ADP-ribosylation factor 63.4 83 0.0029 28.1 14.5 115 248-387 6-122 (148)
139 1x5b_A Signal transducing adap 62.2 54 0.0019 29.9 10.5 87 109-195 34-127 (163)
140 2xzz_A Protein-glutamine gamma 60.9 10 0.00035 32.1 4.8 67 535-607 18-85 (102)
141 1t06_A Hypothetical protein; s 60.4 44 0.0015 32.4 10.1 69 65-133 118-194 (235)
142 3zyq_A Hepatocyte growth facto 59.5 66 0.0023 31.0 11.1 91 23-116 13-115 (226)
143 3dad_A FH1/FH2 domain-containi 58.4 1.7E+02 0.0058 30.0 15.4 60 97-156 125-189 (339)
144 3gjx_A Exportin-1; transport, 56.4 3.2E+02 0.011 32.6 29.4 119 75-193 462-595 (1073)
145 3ldz_A STAM-1, signal transduc 56.2 64 0.0022 28.6 9.6 87 109-195 24-116 (140)
146 3g2s_A C-terminal fragment of 54.5 1.2E+02 0.0041 27.2 11.3 97 18-118 10-125 (149)
147 3s4w_B Protein FACD2, fanconi 53.2 2.1E+02 0.0071 34.9 16.0 82 279-361 189-271 (1323)
148 1elk_A Target of MYB1; superhe 51.8 70 0.0024 28.9 9.3 70 246-317 19-90 (157)
149 2r39_A FIXG-related protein; s 49.0 41 0.0014 28.8 6.9 53 539-596 33-85 (118)
150 3qml_C Protein SLS1, nucleotid 46.8 65 0.0022 32.7 8.8 90 103-193 83-189 (315)
151 3rru_A TOM1L1 protein; structu 46.7 1E+02 0.0035 27.7 9.4 99 246-346 19-130 (152)
152 1juq_A ADP-ribosylation factor 45.9 1.2E+02 0.0043 27.7 10.1 86 109-194 32-129 (171)
153 1mhq_A ADP-ribosylation factor 45.7 1.1E+02 0.0037 27.4 9.4 86 109-194 20-117 (148)
154 1m1s_A WR4; structural genomic 45.7 25 0.00086 30.4 4.9 47 538-590 24-70 (116)
155 1dvp_A HRS, hepatocyte growth 44.6 65 0.0022 30.8 8.3 70 40-112 27-108 (220)
156 1dvp_A HRS, hepatocyte growth 43.8 1.9E+02 0.0066 27.3 11.6 70 247-318 9-79 (220)
157 1row_A SSP-19, MSP-domain prot 42.4 25 0.00086 30.0 4.3 47 538-590 16-62 (109)
158 1ho8_A Vacuolar ATP synthase s 38.8 40 0.0014 36.4 6.1 53 67-119 417-476 (480)
159 3tj1_A RNA polymerase I-specif 36.9 3.3E+02 0.011 30.5 13.3 134 345-483 129-269 (649)
160 3dad_A FH1/FH2 domain-containi 36.5 3.6E+02 0.012 27.5 15.4 26 168-193 258-286 (339)
161 1h2v_C 80 kDa nuclear CAP bind 36.2 3.4E+02 0.012 31.0 13.9 74 339-413 14-89 (771)
162 1pzd_A Coatomer gamma subunit; 35.9 39 0.0013 34.6 5.3 107 525-635 94-218 (322)
163 1elk_A Target of MYB1; superhe 32.5 2.7E+02 0.0093 24.9 10.4 88 108-195 34-132 (157)
164 1r4x_A Gamma1-COP, coatomer ga 32.3 52 0.0018 32.8 5.4 67 525-595 47-114 (275)
165 1msp_A MSP, major sperm protei 31.9 53 0.0018 28.5 4.9 50 538-593 26-75 (126)
166 1vsy_4 Proteasome activator BL 30.6 2.8E+02 0.0095 31.9 11.9 108 85-192 334-454 (799)
167 2e6j_A Hydin protein; PAPD, st 30.4 76 0.0026 26.3 5.5 56 535-597 24-81 (112)
168 4atg_A TAF6; transcription, TF 30.1 2.5E+02 0.0087 26.3 9.6 54 404-457 105-163 (196)
169 1z9l_A Vesicle-associated memb 29.7 52 0.0018 28.6 4.4 51 537-593 27-77 (128)
170 2qc7_A ERP31, ERP28, endoplasm 26.9 1E+02 0.0035 29.9 6.5 60 358-418 135-198 (240)
171 1vsy_5 Proteasome activator BL 26.4 56 0.0019 38.8 5.2 98 50-147 838-956 (997)
172 1upk_A MO25 protein; transfera 24.8 3.6E+02 0.012 27.6 10.2 86 347-433 204-297 (341)
173 2cri_A Vesicle-associated memb 24.5 81 0.0028 28.1 4.8 50 537-592 31-80 (147)
174 3ut4_A CTHE_2751, putative unc 21.6 4.1E+02 0.014 23.3 8.7 108 74-192 16-129 (134)
175 1uw4_B UPF2, regulator of nons 21.5 5.2E+02 0.018 25.1 10.3 115 340-457 11-135 (248)
176 1wic_A Hypothetical protein ri 21.0 1.1E+02 0.0037 27.5 4.9 50 538-593 36-85 (152)
177 1xkp_A Putative membrane-bound 20.9 5.1E+02 0.017 25.1 10.1 66 407-474 102-175 (246)
178 2ys4_A Hydrocephalus-inducing 20.4 2.9E+02 0.0099 23.2 7.5 61 536-606 40-103 (122)
179 2npp_B PP2A, B subunit, serine 20.2 3.6E+02 0.012 28.7 9.5 91 45-135 274-377 (449)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=6.7e-78 Score=690.36 Aligned_cols=478 Identities=15% Similarity=0.192 Sum_probs=409.1
Q ss_pred hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267 2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS 81 (645)
Q Consensus 2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~ 81 (645)
|++|+|++|++|+|++++|++|+++++|+|+++||+||+|+..|+++++|+++|+||+|+|||+|+||++||+|||+||+
T Consensus 58 ~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~ 137 (621)
T 2vgl_A 58 YVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAN 137 (621)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHhhcCchhHH--HHHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 82 IRVPMIIPIVMLAIKDSS--LDMSPYVRKTAAHAIPKLYSLDPEQKE--ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l--~d~~pyVRK~Aalal~kl~~~~p~~~~--~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
|+.+++++.+.++|++++ .|++|||||+|++|+.|+|+++|+.++ +|.+.+.++|+|+|++|+.+|+.++.+++++
T Consensus 138 i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 138 VGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999999999999999987 8999999999999999999999999999987
Q ss_pred hhh----hhHHHHHHHHHHhcC--C-----------CchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8267 158 RID----MIHKSYRKLCNLLVD--V-----------DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKP 220 (645)
Q Consensus 158 ~~~----li~~~~~kL~~~L~~--~-----------~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~ 220 (645)
+++ ++++.++.|.+.+.. + +||+|+++|++|..|++ .. +. ..
T Consensus 218 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~------~~-d~-------~~------- 276 (621)
T 2vgl_A 218 NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP------PE-DP-------AV------- 276 (621)
T ss_dssp CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS------CS-SH-------HH-------
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC------CC-CH-------HH-------
Confidence 653 455566666666542 3 79999999999999873 11 00 00
Q ss_pred CcCCcccccccccccccccccChhHHHHHHhhh--h---hhcCCCh--HHHHHHHHHHHhcCChHH-HHHHHHHHHHHhC
Q psy8267 221 FYDDETTRDTKNETSQVSTELDPDHRLLLKNAK--P---LLQSRNA--AVVMAVAQLFHHLAPRRE-VAIIAKALVRLLR 292 (645)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~--~---ll~s~n~--aVv~ea~~~i~~l~~~~~-~~~~~~~L~~lL~ 292 (645)
... +...+..+++.+. + .++|.|+ ||+|||+++++++++... +..+++.|++||+
T Consensus 277 ----------------~~~-l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~ 339 (621)
T 2vgl_A 277 ----------------RGR-LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQ 339 (621)
T ss_dssp ----------------HHH-HHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSS
T ss_pred ----------------HHH-HHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 000 1112233443321 2 4567776 999999999999987544 6678999999995
Q ss_pred -CChhHHHHHHHHHHHHHhhcc--cchhhhhceEE-EcC-CCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHH
Q psy8267 293 -SSREVQTVVLTTIASLAVKRR--ALFVPYLKSFY-VRS-SDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKA 367 (645)
Q Consensus 293 -s~~niryv~L~~l~~l~~~~p--~~~~~~~~~f~-~l~-~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~ 367 (645)
+++|+||++|++|.+++..+| +.+++|...|+ |+. ++|++||++|||+|+.|+|++|++.|++||++|+.+.|.+
T Consensus 340 ~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~ 419 (621)
T 2vgl_A 340 HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYS 419 (621)
T ss_dssp CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHH
T ss_pred CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHH
Confidence 889999999999999999886 68899999887 677 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHH-HHHH
Q psy8267 368 FVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPT-ARAA 446 (645)
Q Consensus 368 ~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~-ak~~ 446 (645)
|+++++++||.||+||+++.+||+++++++++.+|+++.+|+|.+++++++++|+.|++++.++++.+++..... ...+
T Consensus 420 ~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~ 499 (621)
T 2vgl_A 420 IREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKV 499 (621)
T ss_dssp HHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765332 2334
Q ss_pred HHHHHhcccccCCC---c-hHHHHHHHHHhhcCCchHHHHHHHHhhh-------------------------------hh
Q psy8267 447 ILWLLGEYSHLVPA---L-GPDVLRKAAITFVNEEDIVKLQVLNLAP-------------------------------VE 491 (645)
Q Consensus 447 ~iwilGEy~~~i~~---~-~~diLr~l~~~f~~e~~~vk~~iL~~~~-------------------------------~~ 491 (645)
++|++||||+.+++ + +.++++.+.++|..|+++||.++|++++ +|
T Consensus 500 ~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~~~~~~d~evrdR 579 (621)
T 2vgl_A 500 GGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQLKNADVELQQR 579 (621)
T ss_dssp HHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHHHHSCSSHHHHHH
T ss_pred HHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 57999999998876 2 3499999999999999999999999998 38
Q ss_pred cccCCCC---C-C----CCCC--CcH----HHHHHHHhCC
Q psy8267 492 AAGITTL---P-P----AFTS--PRY----TEVLNKIGGG 517 (645)
Q Consensus 492 a~~y~~l---~-~----~v~~--p~~----~~ll~~~~~~ 517 (645)
|++|++| + + .+++ |+| +.||+|++.+
T Consensus 580 A~~y~~Ll~~~~~~~~~~vl~~~P~~~~~~~~ll~~l~~~ 619 (621)
T 2vgl_A 580 AVEYLRLSTVASTDILATVLEEMPPFPERESSILAKLKKK 619 (621)
T ss_dssp HHHHHHHHHSSCSTTTTTTSSSCCCCCCC-----------
T ss_pred HHHHHHHHccCHHHHHHHHhhcCCCCCCcchHHHHHHHhc
Confidence 8888762 2 1 4555 888 8899999765
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=1.6e-73 Score=651.60 Aligned_cols=485 Identities=32% Similarity=0.522 Sum_probs=443.1
Q ss_pred hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267 2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS 81 (645)
Q Consensus 2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~ 81 (645)
|++|++++|++|+|++++|++++++++|+|+++||+||+|+..+++.++|++++++|+++|||+|+||.+|++||++||+
T Consensus 33 ~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~ 112 (591)
T 2vgl_B 33 AVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGC 112 (591)
T ss_dssp HHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH--HHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 82 IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE--ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~--~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
++.+++++.+.+++++++.|++|||||+|+.|+.++|+.+|+.++ +|++.+.++|+|+|++|+.+|+.++.+++++..
T Consensus 113 i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 113 IRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp CCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred CChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999886 699999999999999999999999999997643
Q ss_pred -----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccc
Q psy8267 160 -----DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNET 234 (645)
Q Consensus 160 -----~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~ 234 (645)
++.++.+.+|++.+.+++||+|++++++|.+|+ |..
T Consensus 193 ~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~------~~~--------------------------------- 233 (591)
T 2vgl_B 193 NSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN------PKD--------------------------------- 233 (591)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC------CCS---------------------------------
T ss_pred CccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC------CCC---------------------------------
Confidence 456788999999999999999999999998886 321
Q ss_pred cccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCC-----hHHH----HHHHHHHHHHhCCChhHHHHHHHHH
Q psy8267 235 SQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP-----RREV----AIIAKALVRLLRSSREVQTVVLTTI 305 (645)
Q Consensus 235 ~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~-----~~~~----~~~~~~L~~lL~s~~niryv~L~~l 305 (645)
+.+.+.+++.+.+++++.|++|++||+++++++.+ ++.+ ..++.+|+.++++++|+||++|++|
T Consensus 234 -------~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l 306 (591)
T 2vgl_B 234 -------DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNI 306 (591)
T ss_dssp -------HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 12345678888899999999999999999999753 1223 3566778887788999999999999
Q ss_pred HHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccc
Q psy8267 306 ASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQ 385 (645)
Q Consensus 306 ~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~ 385 (645)
..++..+|+.+++|++.|+|+.+||.+||++||++|+.|++++|++.|++||.+|+.+.|.+||++++.+|+.||.+|++
T Consensus 307 ~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 307 NLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHH
Q psy8267 386 VTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDV 465 (645)
Q Consensus 386 ~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~di 465 (645)
...||+++++++++.+++++..|+|.+++++++++|+.+++++..|++.++++.+|.++++++|++||||+.+++ ++++
T Consensus 387 ~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-~~~~ 465 (591)
T 2vgl_B 387 SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-ADEL 465 (591)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-HHHH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhhcCCchHHHHHHHHhhh-------------------------------hhcccCCCCCC--------CCCC--
Q psy8267 466 LRKAAITFVNEEDIVKLQVLNLAP-------------------------------VEAAGITTLPP--------AFTS-- 504 (645)
Q Consensus 466 Lr~l~~~f~~e~~~vk~~iL~~~~-------------------------------~~a~~y~~l~~--------~v~~-- 504 (645)
++.++++|.+++++||.+++++++ +||++|+.+-. .|++
T Consensus 466 l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~~~~~v~~~~ 545 (591)
T 2vgl_B 466 LESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEK 545 (591)
T ss_dssp HHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTHHHHHHTSCC
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHHHHHHHcCCC
Confidence 999999999999999999999998 48888877432 2444
Q ss_pred CcH--------HHHHHHHhCCCCcceeeEeecccccc
Q psy8267 505 PRY--------TEVLNKIGGGRGMLSALASFSRAPCL 533 (645)
Q Consensus 505 p~~--------~~ll~~~~~~~~~l~~~~~~~~~~~~ 533 (645)
|+| .++++.+....|+++..|+.+.+.++
T Consensus 546 p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 582 (591)
T 2vgl_B 546 PLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFV 582 (591)
T ss_dssp CCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC
T ss_pred CCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHc
Confidence 655 67777776666878888887776553
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.1e-70 Score=631.22 Aligned_cols=450 Identities=18% Similarity=0.222 Sum_probs=392.0
Q ss_pred hHHHHHHHHhCCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Q psy8267 2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS 81 (645)
Q Consensus 2 alkkli~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~ 81 (645)
|++|++++|++|+|++++|++|+|+++|+|+++||+||+|+..|+++++|+++|+||+|+|||+|+||.+|++|||+||+
T Consensus 54 ~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~ 133 (618)
T 1w63_A 54 NVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGC 133 (618)
T ss_dssp HHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhh
Q psy8267 82 IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDM 161 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~l 161 (645)
|+.+++++.+.+.|.+++.|++|||||+|++|+.|+|+.+|+.++.|.+.+.++|+|+|++|+.+|+.++.++++.+++.
T Consensus 134 i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~ 213 (618)
T 1w63_A 134 MGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM 213 (618)
T ss_dssp HCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999766542
Q ss_pred ---hHHHHHHHHHHhcC---------------CCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q psy8267 162 ---IHKSYRKLCNLLVD---------------VDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYD 223 (645)
Q Consensus 162 ---i~~~~~kL~~~L~~---------------~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~ 223 (645)
+.+.+..+++.|.+ .+||+|++++++|..|++. +|...+
T Consensus 214 ~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~---~~~~~~-------------------- 270 (618)
T 1w63_A 214 LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN---DDDSSE-------------------- 270 (618)
T ss_dssp HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT---CHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC---CHHHHH--------------------
Confidence 22334445555543 5999999999999999842 221100
Q ss_pred CcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHH-HHHHHHHHHHHhC-CChhHHHHH
Q psy8267 224 DETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRRE-VAIIAKALVRLLR-SSREVQTVV 301 (645)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~-~~~~~~~L~~lL~-s~~niryv~ 301 (645)
. +.+-+..+++.+ ...++.+.+|++||+++++++.+.+. ...+++.|++||. +++|+||++
T Consensus 271 ---------------~-~~~~L~~l~~~~-~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~a 333 (618)
T 1w63_A 271 ---------------A-MNDILAQVATNT-ETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVA 333 (618)
T ss_dssp ---------------T-THHHHHHHHHTS-CCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHH
T ss_pred ---------------H-HHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 0 001111222111 12345567999999999999987544 3467899999996 789999999
Q ss_pred HHHHHHHHhhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy8267 302 LTTIASLAVKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCA 380 (645)
Q Consensus 302 L~~l~~l~~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la 380 (645)
|++|..++..+|+.+++|...++ |++|+|.+||++|||+|+.|++++|++.|++||.+|+.+.|.+||++++.+||.||
T Consensus 334 L~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la 413 (618)
T 1w63_A 334 LTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAA 413 (618)
T ss_dssp HHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998776 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhcc--CChHHHHHHHHHHHhcccccC
Q psy8267 381 ANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDS--ITVPTARAAILWLLGEYSHLV 458 (645)
Q Consensus 381 ~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~--i~~~~ak~~~iwilGEy~~~i 458 (645)
.+|++...||++.++++|+.+++++.+++|.+++++++++|+.+++++.++++++++ .+++.+++ ++|++||||+.+
T Consensus 414 ~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~-~~wilGEy~~~i 492 (618)
T 1w63_A 414 EKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQV-AAWCIGEYGDLL 492 (618)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHH-HHHHHHHHHHHH
T ss_pred HHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHH-HHHHHhhhHHHh
Confidence 999999999999999999999999999999999999999999999999999999975 34566664 699999999876
Q ss_pred CC--------------chHHHHHHHHHhhcCCchHHHHHHHHhhhhhcc
Q psy8267 459 PA--------------LGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAA 493 (645)
Q Consensus 459 ~~--------------~~~diLr~l~~~f~~e~~~vk~~iL~~~~~~a~ 493 (645)
++ ..+++++.++++| .++++||.++|++++|-+.
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~ 540 (618)
T 1w63_A 493 VSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLST 540 (618)
T ss_dssp TTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHT
T ss_pred cccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Confidence 43 1346677777766 7899999999999986543
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=5.7e-50 Score=424.66 Aligned_cols=296 Identities=15% Similarity=0.191 Sum_probs=212.3
Q ss_pred hHHHHHHHHhCCCC-----cccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy8267 2 AKGTCCYMMAKGRD-----ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASAL 76 (645)
Q Consensus 2 alkkli~l~~~G~d-----vs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralAL 76 (645)
+|+|+|++|+.|++ ++++|++|+|+++|+|+++|||||+|+..|++..+| ++|++|+|+||++|+||++||+||
T Consensus 47 ~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~iLv~Nsl~kDl~~~N~~iR~lAL 125 (355)
T 3tjz_B 47 ILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VIIVTSSLTKDMTGKEDSYRGPAV 125 (355)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GGGGHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhcCCCcHhHHHHHH
Confidence 69999999999999 789999999999999999999999999999999655 789999999999999999999999
Q ss_pred HHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHCh
Q psy8267 77 RVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 77 r~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~ 156 (645)
|+||+|+.++|++.+.+.+++++.|++|||||+|++|+.|+|+.+||.++.|.+.+.++++|+|++|+.+|+.++.+++.
T Consensus 126 RtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 126 RALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhhhhHHHHHHHHHHhcCC---CchhHHHHHHHHHHHHhhhcCC-CCCCCCCCCCCCCCCCCCCCCCCcCCcccccccc
Q psy8267 157 ERIDMIHKSYRKLCNLLVDV---DEWGQVFILNMLTRYARTQFTD-PNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKN 232 (645)
Q Consensus 157 ~~~~li~~~~~kL~~~L~~~---~~W~Qv~iL~lL~~y~r~~~~~-P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~ 232 (645)
.... .+.+|+..+.+. +||+|+.+|+++..|++. + |..
T Consensus 206 ~d~~----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~---d~~~~------------------------------- 247 (355)
T 3tjz_B 206 NDRL----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLED---EDGSR------------------------------- 247 (355)
T ss_dssp TCHH----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------------------------------
T ss_pred hchH----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc---cchhh-------------------------------
Confidence 4321 345667666663 799999999999888742 1 110
Q ss_pred cccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHH
Q psy8267 233 ETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR--REVAIIAKALVRLL-RSSREVQTVVLTTIASLA 309 (645)
Q Consensus 233 ~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~--~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~ 309 (645)
...+++.+.+.++|.|++|+|||+++++.+... ..+..+++.|..|| ++++|+||++|++|..++
T Consensus 248 ------------~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 248 ------------DSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp ---------------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred ------------HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 012445556888999999999999999988652 23456778899999 588999999999999999
Q ss_pred hhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccCcC
Q psy8267 310 VKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLASET 348 (645)
Q Consensus 310 ~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~ 348 (645)
..+|++++.|..++. |..|.+.+|+..|+..|.+.++|.
T Consensus 316 ~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e~ 355 (355)
T 3tjz_B 316 MKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSEG 355 (355)
T ss_dssp ----------------------------------------
T ss_pred HHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCCC
Confidence 999999999999997 889999999999999999988763
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.65 E-value=6.8e-14 Score=156.95 Aligned_cols=423 Identities=12% Similarity=0.093 Sum_probs=269.9
Q ss_pred HhccCCchhHHHHHHHHHHhcccCchHH-HHHHHHHHHHcCCCCHHHHHHHHHHHhCC----CccccHHHHHHHHHhhcC
Q psy8267 26 NVVSKNIEVKKLVYVYLARYAEEQQDLA-LLSISTFQRALKDPNQLIRASALRVLSSI----RVPMIIPIVMLAIKDSSL 100 (645)
Q Consensus 26 li~s~~~~~KkL~Yl~l~~~~~~~~dl~-lL~iNsl~kDL~~~N~~iralALr~ls~I----~~~ei~~~l~~~I~~~l~ 100 (645)
+..+++...|..+...+..++..-++.. --....+.+-++|+++.+|..|+++++.+ +.+...+.+.+.+.+++.
T Consensus 134 l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 213 (588)
T 1b3u_A 134 LAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAS 213 (588)
T ss_dssp HHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHT
T ss_pred HhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhc
Confidence 3344555555555444444443322211 12344555666788888888888888876 333444566777778888
Q ss_pred CCChHHHHHHHHHHHHHhhcCch--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhh-hhh-hHHHHHHHHHHhcCC
Q psy8267 101 DMSPYVRKTAAHAIPKLYSLDPE--QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER-IDM-IHKSYRKLCNLLVDV 176 (645)
Q Consensus 101 d~~pyVRK~Aalal~kl~~~~p~--~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~-~~l-i~~~~~kL~~~L~~~ 176 (645)
|+++.||+.|+.++.++....++ ..+.+.+.+.++++|++..|..+|+.++..++... .+. ....+..+++.+.+.
T Consensus 214 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 293 (588)
T 1b3u_A 214 DEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 293 (588)
T ss_dssp CSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS
T ss_pred CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCC
Confidence 88888888888888888765443 23567777888888888888888888777765321 111 111234456666777
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhh
Q psy8267 177 DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLL 256 (645)
Q Consensus 177 ~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll 256 (645)
++..+......|..++... +.. . . ..+....++..+..++
T Consensus 294 ~~~vr~~a~~~l~~~~~~~---~~~----------~-----------------------~----~~~~~~~l~p~l~~~l 333 (588)
T 1b3u_A 294 EAEVRAAASHKVKEFCENL---SAD----------C-----------------------R----ENVIMSQILPCIKELV 333 (588)
T ss_dssp SHHHHHHHHHHHHHHHHTS---CTT----------T-----------------------H----HHHHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh---Chh----------h-----------------------h----hhHHHHHHHHHHHHHh
Confidence 7777777777777776320 100 0 0 0011233455556677
Q ss_pred cCCChHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhccc-ch-hhhhceEE-EcCC
Q psy8267 257 QSRNAAVVMAVAQLFHHLAP----RREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRA-LF-VPYLKSFY-VRSS 328 (645)
Q Consensus 257 ~s~n~aVv~ea~~~i~~l~~----~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~-~~-~~~~~~f~-~l~~ 328 (645)
++.+..|...++.++..+.+ ......+.+.+..+++ .++++|..++.++..+....+. .+ ...+..+. +..+
T Consensus 334 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d 413 (588)
T 1b3u_A 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413 (588)
T ss_dssp TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Confidence 88888998888887766542 1123456677778886 5689999999999888764331 11 11111121 3456
Q ss_pred CChHHHHHHHHHHHHccCc----CCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhhccCC
Q psy8267 329 DPTHVKTLKLELLTTLASE----TSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQV--TDTCLTGLVSLLSYSD 402 (645)
Q Consensus 329 d~~~Ir~~kLdlL~~L~~~----~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~--~~~~v~~ll~LL~~~~ 402 (645)
++..+|..+++.|..++.. ...+.++.-+...+.+.+.++|+.++.+++.++..+... ....+..+.+++....
T Consensus 414 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~ 493 (588)
T 1b3u_A 414 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 493 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSC
T ss_pred CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCC
Confidence 6788999999999887642 223568888888899999999999999999999887542 2334445555555555
Q ss_pred hhhHHHHHHHHHHHhhcCCc--chHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCC--chHHHHHHHHHhhcCCch
Q psy8267 403 EAVVAESVVVIKNLLQTQPE--AYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPA--LGPDVLRKAAITFVNEED 478 (645)
Q Consensus 403 ~~v~~e~v~~i~~il~~~p~--~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~--~~~diLr~l~~~f~~e~~ 478 (645)
..+...++..+..+....+. ....++..+.+.+++ .++.+|..++|.+|+++..+.. ..+.++..+.+-..+.++
T Consensus 494 ~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~ 572 (588)
T 1b3u_A 494 YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD-PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 572 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGC-SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCC-CCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCch
Confidence 56666777777666643221 123455666666655 4578999999999999876543 123444445554457788
Q ss_pred HHHHHHHHhhh
Q psy8267 479 IVKLQVLNLAP 489 (645)
Q Consensus 479 ~vk~~iL~~~~ 489 (645)
.||.....++.
T Consensus 573 ~vr~~a~~al~ 583 (588)
T 1b3u_A 573 DVKYFAQEALT 583 (588)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99988777654
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.57 E-value=7.8e-13 Score=148.29 Aligned_cols=429 Identities=14% Similarity=0.096 Sum_probs=266.9
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchHH--HHHHHHHHHHcCCCCHHHHHHHHHHHhCCC---ccccHHHHHH
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLA--LLSISTFQRALKDPNQLIRASALRVLSSIR---VPMIIPIVML 93 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~--lL~iNsl~kDL~~~N~~iralALr~ls~I~---~~ei~~~l~~ 93 (645)
+++...++..+++..+++.+--.+..++...++-. -.....+.+-..++++.+|..|.+.++.+. ...+.+.+.+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~ 167 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQ 167 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44544555556666777776666666655433211 112333333345667777777766665542 2334456666
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhhcCch--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh--hhhHHHHHHH
Q psy8267 94 AIKDSSLDMSPYVRKTAAHAIPKLYSLDPE--QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI--DMIHKSYRKL 169 (645)
Q Consensus 94 ~I~~~l~d~~pyVRK~Aalal~kl~~~~p~--~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~--~li~~~~~kL 169 (645)
.+.+++.|++|.||+.|+.++.++.+..++ ..+.+.+.+..+++|+++.|..+|+.++..++.... .........+
T Consensus 168 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 247 (588)
T 1b3u_A 168 YFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 667777777888888888887777765443 235566777777777777777766666665543211 0011111223
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHH
Q psy8267 170 CNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLL 249 (645)
Q Consensus 170 ~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll 249 (645)
.+.+.+.++..+....+.|..++... .| +.....++
T Consensus 248 ~~~~~d~~~~vR~~a~~~l~~l~~~~--~~------------------------------------------~~~~~~l~ 283 (588)
T 1b3u_A 248 RQAAEDKSWRVRYMVADKFTELQKAV--GP------------------------------------------EITKTDLV 283 (588)
T ss_dssp HHHHTCSSHHHHHHHHHTHHHHHHHH--CH------------------------------------------HHHHHTHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHh--Cc------------------------------------------ccchhHHH
Confidence 33344444334555555555554310 00 00011234
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHhc----CCh----HHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhccc-chhhh
Q psy8267 250 KNAKPLLQSRNAAVVMAVAQLFHHL----APR----REVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRA-LFVPY 319 (645)
Q Consensus 250 ~~~~~ll~s~n~aVv~ea~~~i~~l----~~~----~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~-~~~~~ 319 (645)
..+..+++..++.|.-.|+..+..+ ++. .....+.+.+..+++ .++.+|..+..++..++...+. .+.++
T Consensus 284 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 363 (588)
T 1b3u_A 284 PAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 363 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4445566777788877777765433 222 234556777777775 5678999888888777654332 11222
Q ss_pred hce-EE-EcCCCChHHHHHHHHHHHHccCcCC----HHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcccc--HHHHH
Q psy8267 320 LKS-FY-VRSSDPTHVKTLKLELLTTLASETS----IASILREFQTYISSVDKAFVAATVQAIGKCAANIAQV--TDTCL 391 (645)
Q Consensus 320 ~~~-f~-~l~~d~~~Ir~~kLdlL~~L~~~~N----v~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~--~~~~v 391 (645)
+.. |. ++.|++..||..+++-|..++..-. .+.++..|...+.+.+..+|..++..++.++..++.. ....+
T Consensus 364 l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 443 (588)
T 1b3u_A 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443 (588)
T ss_dssp THHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 222 22 3456678999999988877776433 3567788888888888999999999999999876543 24677
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhhcCCcc--hHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCC--chHHHHH
Q psy8267 392 TGLVSLLSYSDEAVVAESVVVIKNLLQTQPEA--YTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPA--LGPDVLR 467 (645)
Q Consensus 392 ~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~--~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~--~~~diLr 467 (645)
..+++++.+....|...++..+..++...+.. ...++..+.+.+.+ .....|.+++|++|+.+..... +.+.++.
T Consensus 444 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~ 522 (588)
T 1b3u_A 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVCGQDITTKHMLP 522 (588)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88888898888888888888888888764431 23455555554443 4567898999999998765432 2346677
Q ss_pred HHHHhhcCCchHHHHHHHHhhhhhc
Q psy8267 468 KAAITFVNEEDIVKLQVLNLAPVEA 492 (645)
Q Consensus 468 ~l~~~f~~e~~~vk~~iL~~~~~~a 492 (645)
.+.+...+..++||...+.++..-+
T Consensus 523 ~l~~~l~d~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 523 TVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred HHHhhCCCCCchHHHHHHHHHHHHH
Confidence 7777778888999999988886543
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.54 E-value=1.3e-11 Score=146.00 Aligned_cols=243 Identities=13% Similarity=0.164 Sum_probs=179.2
Q ss_pred HHHHhhhhhhcCCChHHHHHHHHHHHhcCC---hH---HHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhh
Q psy8267 247 LLLKNAKPLLQSRNAAVVMAVAQLFHHLAP---RR---EVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPY 319 (645)
Q Consensus 247 ~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~---~~---~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~ 319 (645)
.++..+..++++.++.|..+|++++..+-. .. .+..+.+.+..++. .++++|..+++++..++..+|+.+.+|
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 253 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 345555566778888999999888865432 11 13456677777775 678999999999999999999988888
Q ss_pred hceEE-----EcCCCChHHHHHHHHHHHHccCcC--------CHHHHHHHHHHhh-----------cc--c---------
Q psy8267 320 LKSFY-----VRSSDPTHVKTLKLELLTTLASET--------SIASILREFQTYI-----------SS--V--------- 364 (645)
Q Consensus 320 ~~~f~-----~l~~d~~~Ir~~kLdlL~~L~~~~--------Nv~~Il~EL~~yl-----------~~--~--------- 364 (645)
+..++ +..+++..+|..+++.+..++... .+..++.-|...+ .+ .
T Consensus 254 l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~ 333 (852)
T 4fdd_A 254 MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTIS 333 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------C
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccc
Confidence 76553 346777899999999999999754 3445666666655 22 1
Q ss_pred cHHHHHHHHHHHHHHHhhcccc-HHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCc----chHHHHHHHHHhhccCC
Q psy8267 365 DKAFVAATVQAIGKCAANIAQV-TDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPE----AYTDIIRHMVRLSDSIT 439 (645)
Q Consensus 365 d~~~~~~~i~~I~~la~k~~~~-~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~----~~~~~i~~L~~~l~~i~ 439 (645)
+...|+.+..+++.++...+.. ....+..+.+++.+.+..+...++..+..+....++ ....++..+...+.+ .
T Consensus 334 ~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d-~ 412 (852)
T 4fdd_A 334 DWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD-K 412 (852)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC-S
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC-C
Confidence 1125888999999999887643 355677777788877778888888888888765432 235567777777765 4
Q ss_pred hHHHHHHHHHHHhcccccC-----CCchHHHHHHHHHhhcCCchHHHHHHHHhhhh
Q psy8267 440 VPTARAAILWLLGEYSHLV-----PALGPDVLRKAAITFVNEEDIVKLQVLNLAPV 490 (645)
Q Consensus 440 ~~~ak~~~iwilGEy~~~i-----~~~~~diLr~l~~~f~~e~~~vk~~iL~~~~~ 490 (645)
.+.+|.+++|.+|+|+... ......++..+.+...+.++.||.....++..
T Consensus 413 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~ 468 (852)
T 4fdd_A 413 KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFAT 468 (852)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6889999999999998743 22456788888888878889999988887764
No 8
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.51 E-value=4.6e-12 Score=144.04 Aligned_cols=370 Identities=15% Similarity=0.198 Sum_probs=228.7
Q ss_pred HHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC--CccccHH--HHHHHHHhhc
Q psy8267 24 VKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI--RVPMIIP--IVMLAIKDSS 99 (645)
Q Consensus 24 vkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I--~~~ei~~--~l~~~I~~~l 99 (645)
.+-+.++|..++.++--++..+. .+++.--.+..+.+-+.|+||++|.-|..+++++ ..++.++ .+++.+.+++
T Consensus 92 ~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL 169 (591)
T 2vgl_B 92 VKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLI 169 (591)
T ss_dssp GGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHh
Confidence 33456777777776655555553 4566666667777777788888887777777665 3466666 3667777777
Q ss_pred CCCChHHHHHHHHHHHHHhhcCchh------------------------------------------HHHHHHHHHHhhc
Q psy8267 100 LDMSPYVRKTAAHAIPKLYSLDPEQ------------------------------------------KEELVLVIEKLLQ 137 (645)
Q Consensus 100 ~d~~pyVRK~Aalal~kl~~~~p~~------------------------------------------~~~~~~~l~~lL~ 137 (645)
.|++|.||..|+.++..+...+|+. .+.+++.+..+|.
T Consensus 170 ~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~ 249 (591)
T 2vgl_B 170 ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS 249 (591)
T ss_dssp SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSC
T ss_pred CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHc
Confidence 7778888888877777776655421 2334555666778
Q ss_pred CCChhHHHHHHHHHHHHCh---hhhhhhHHHH----HHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCC
Q psy8267 138 DKTTLVVGSAVMAFEEVCP---ERIDMIHKSY----RKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDD 210 (645)
Q Consensus 138 D~~~~V~~sav~~l~ei~~---~~~~li~~~~----~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~ 210 (645)
+.++.|+..|+.++..+.+ ...+.+...+ ..|+. |.+.++-.+...|+.|...... .|..-..
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~-L~~~d~~vr~~aL~~l~~i~~~---~p~~~~~------ 319 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT-LLSGEPEVQYVALRNINLIVQK---RPEILKQ------ 319 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH-HTTSCHHHHHHHHHHHHHHHHH---CCSTTTT------
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHh---ChHHHHH------
Confidence 8999999999999988764 2233333222 23333 3457888888888888887754 2422100
Q ss_pred CCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q psy8267 211 DDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRL 290 (645)
Q Consensus 211 ~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~l 290 (645)
.+ +.|+ . +.+....|..+++.++..+...+.+..+.+.|..+
T Consensus 320 -~~-----~~~~-------------------------------~-~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~ 361 (591)
T 2vgl_B 320 -EI-----KVFF-------------------------------V-KYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEY 361 (591)
T ss_dssp -CT-----TTTS-------------------------------C-CTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHH
T ss_pred -HH-----Hhhe-------------------------------e-ccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHH
Confidence 00 0010 0 11223567777777777776554566667777777
Q ss_pred hC-CChhHHHHHHHHHHHHHhhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccC--cCCHHHHHHHHHHhhcc-cc
Q psy8267 291 LR-SSREVQTVVLTTIASLAVKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLAS--ETSIASILREFQTYISS-VD 365 (645)
Q Consensus 291 L~-s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~--~~Nv~~Il~EL~~yl~~-~d 365 (645)
+. .+.++|-.+.++|..++.++|.....++..+. .+.+...+++..++..+..+.. ++-.+.++..|.+++.+ .+
T Consensus 362 l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~ 441 (591)
T 2vgl_B 362 ATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDE 441 (591)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCS
T ss_pred HhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccC
Confidence 75 56778888888888888777755555555443 3455566777777766666542 33334566666666654 35
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhh-ccCChHHHH
Q psy8267 366 KAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLS-DSITVPTAR 444 (645)
Q Consensus 366 ~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l-~~i~~~~ak 444 (645)
++.+..++-.||..+...+. ...++..+++-+......+...++..+.++..+.|+.....+..+++.. .+..+++++
T Consensus 442 ~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evr 520 (591)
T 2vgl_B 442 PDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLR 520 (591)
T ss_dssp HHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHH
Confidence 66677777777776665543 3445555554444445556666777777777777765545555555543 334456664
No 9
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.47 E-value=6.3e-12 Score=143.75 Aligned_cols=394 Identities=12% Similarity=0.094 Sum_probs=277.7
Q ss_pred ccchHHHHHHhccC-C-chhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC--CccccHHHHH
Q psy8267 17 SDLFPAVVKNVVSK-N-IEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI--RVPMIIPIVM 92 (645)
Q Consensus 17 s~lf~~vvkli~s~-~-~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I--~~~ei~~~l~ 92 (645)
+..+.+.|+-+.+. . .++|+.+ .--++-+++.+++++...|+-|++-+--+ .+.++. ...
T Consensus 9 ~~~l~~~i~~ir~~~~~~~e~~~i---------------~~e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~-~~~ 72 (618)
T 1w63_A 9 PIRLRELIRTIRTARTQAEEREMI---------------QKECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAH-FGQ 72 (618)
T ss_dssp CCCHHHHHHHHTTCCCHHHHHHHH---------------HHHHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCG-GGH
T ss_pred cccHHHHHHHHHcCCChHHHHHHH---------------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCc-chH
Confidence 34567777776533 2 2344333 12245678888888877777776655431 233443 355
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHH
Q psy8267 93 LAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNL 172 (645)
Q Consensus 93 ~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~ 172 (645)
..+.+++.+++..+||-+.+++..+.+.+||...-.++.+.+-|.|+|+.|.+.|+.++..+.... +.......+.+.
T Consensus 73 ~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~--~~~~l~~~l~~~ 150 (618)
T 1w63_A 73 LECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSE--MCRDLAGEVEKL 150 (618)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH--HHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH--HHHHHHHHHHHH
Confidence 566678889999999999999999999999977777888889999999999999999999998532 233335556777
Q ss_pred hcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhh
Q psy8267 173 LVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNA 252 (645)
Q Consensus 173 L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~ 252 (645)
|.+.+|...-+..-.+.+..+. +|..- +.+++.+
T Consensus 151 L~~~~~~VRk~A~~al~~l~~~---~p~~v-------------------------------------------~~~~~~l 184 (618)
T 1w63_A 151 LKTSNSYLRKKAALCAVHVIRK---VPELM-------------------------------------------EMFLPAT 184 (618)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHH---CGGGG-------------------------------------------GGGGGGT
T ss_pred HcCCCHHHHHHHHHHHHHHHHH---ChHHH-------------------------------------------HHHHHHH
Confidence 8889999988888777776654 34210 1234555
Q ss_pred hhhhcCCChHHHHHHHHHHHhcCChH-----HHHHHHHHHHHHhC----------------CChhHHHHHHHHHHHHHhh
Q psy8267 253 KPLLQSRNAAVVMAVAQLFHHLAPRR-----EVAIIAKALVRLLR----------------SSREVQTVVLTTIASLAVK 311 (645)
Q Consensus 253 ~~ll~s~n~aVv~ea~~~i~~l~~~~-----~~~~~~~~L~~lL~----------------s~~niryv~L~~l~~l~~~ 311 (645)
..++...|+.|+..|+.++..+.... .+..+++.++++|. .+|-.|-.+++.+..+...
T Consensus 185 ~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 185 KNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp TTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 67788899999999999999887532 23344455555442 2677888899999988876
Q ss_pred cccchhh---hhceE----EEcCCCChHHHHHHHHHHHHccCcCCH-HHHHHHHHHhhccccHHHHHHHHHHHHHHHhhc
Q psy8267 312 RRALFVP---YLKSF----YVRSSDPTHVKTLKLELLTTLASETSI-ASILREFQTYISSVDKAFVAATVQAIGKCAANI 383 (645)
Q Consensus 312 ~p~~~~~---~~~~f----~~l~~d~~~Ir~~kLdlL~~L~~~~Nv-~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~ 383 (645)
.|+.-.. .+..+ ....+....|...+...+..+.+.... ...++-|..++.+.|.++|.-++.+++.++.+.
T Consensus 265 ~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~ 344 (618)
T 1w63_A 265 DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD 344 (618)
T ss_dssp CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC
Confidence 6653221 11111 112233467899999999988764322 246677888898899999999999999999999
Q ss_pred cccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchH
Q psy8267 384 AQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGP 463 (645)
Q Consensus 384 ~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~ 463 (645)
|.....+.+.++..+.+.+.++...++..+..+.. ++--+.++..+.+++.+. +++.|..++..+|.-+...+....
T Consensus 345 p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~ 421 (618)
T 1w63_A 345 HNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRGMMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKR 421 (618)
T ss_dssp HHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHH
Confidence 98888899999999999999999999998888874 222456788888888763 467777778888888876543244
Q ss_pred HHHHHHHHhhcCCc
Q psy8267 464 DVLRKAAITFVNEE 477 (645)
Q Consensus 464 diLr~l~~~f~~e~ 477 (645)
.++..+.+-+...+
T Consensus 422 ~~v~~ll~lL~~~~ 435 (618)
T 1w63_A 422 WHIDTIMRVLTTAG 435 (618)
T ss_dssp HHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhcc
Confidence 45555544333333
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.45 E-value=1.4e-10 Score=137.11 Aligned_cols=392 Identities=13% Similarity=0.105 Sum_probs=274.0
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhccc-----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC---ccccHHHHH
Q psy8267 21 PAVVKNVVSKNIEVKKLVYVYLARYAEE-----QQDLALLSISTFQRALKDPNQLIRASALRVLSSIR---VPMIIPIVM 92 (645)
Q Consensus 21 ~~vvkli~s~~~~~KkL~Yl~l~~~~~~-----~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~---~~ei~~~l~ 92 (645)
..++....+.+..+|+++-+++...... +++.--.+-+.+.+-|.|+++.+|..|..+++.|. .+.-.+.++
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll 130 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLL 130 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHH
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3444434577889999999998877642 33333455566677788999999998888888773 233445566
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhcCchh---------HHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh----
Q psy8267 93 LAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ---------KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI---- 159 (645)
Q Consensus 93 ~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~---------~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~---- 159 (645)
+.+.+++.++++.+|..|+.++.++++..|+. .+.+++.+.+++.|.++.|..+|+.++..+.....
T Consensus 131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence 77778889999999999999999999876654 35677888888999999999999999987764322
Q ss_pred hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccccccc
Q psy8267 160 DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVST 239 (645)
Q Consensus 160 ~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~ 239 (645)
..+...++.+++.+.+.++-.+...++.|..+.... |.
T Consensus 211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~---~~--------------------------------------- 248 (852)
T 4fdd_A 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR---MD--------------------------------------- 248 (852)
T ss_dssp TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC---HH---------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC---HH---------------------------------------
Confidence 223345566777778888877888888888777431 21
Q ss_pred ccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh--------HHHHHHHHHHHHHhC----------C--------
Q psy8267 240 ELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR--------REVAIIAKALVRLLR----------S-------- 293 (645)
Q Consensus 240 ~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~--------~~~~~~~~~L~~lL~----------s-------- 293 (645)
.+.+.+..++..+...+++.+..|..+|+.++..+... ..+..+...+...+. .
T Consensus 249 ~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 249 RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 01222344666666667788889999998887766531 123456666666661 1
Q ss_pred -----ChhHHHHHHHHHHHHHhhcccchhhhhceEE--EcCCCChHHHHHHHHHHHHccCcC------CHHHHHHHHHHh
Q psy8267 294 -----SREVQTVVLTTIASLAVKRRALFVPYLKSFY--VRSSDPTHVKTLKLELLTTLASET------SIASILREFQTY 360 (645)
Q Consensus 294 -----~~niryv~L~~l~~l~~~~p~~~~~~~~~f~--~l~~d~~~Ir~~kLdlL~~L~~~~------Nv~~Il~EL~~y 360 (645)
+.++|..+..++..++...++.+-+.+..++ .+.+++..+|..++..|..++... ....++.-|...
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~ 408 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQC 408 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 2367999999999998876654333333333 345667899999999999998743 356678888888
Q ss_pred hccccHHHHHHHHHHHHHHHhhcc-----ccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCc----chHHHHHHH
Q psy8267 361 ISSVDKAFVAATVQAIGKCAANIA-----QVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPE----AYTDIIRHM 431 (645)
Q Consensus 361 l~~~d~~~~~~~i~~I~~la~k~~-----~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~----~~~~~i~~L 431 (645)
+.+.++.+|..++.++|+++...+ ......+..+++.+......+...+...+..+....+. ....++..+
T Consensus 409 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L 488 (852)
T 4fdd_A 409 LSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTL 488 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHH
Confidence 889999999999999999887543 34567778888888877777888888888888764332 234566777
Q ss_pred HHhhccCChHH--HHHHHHHHHhcc
Q psy8267 432 VRLSDSITVPT--ARAAILWLLGEY 454 (645)
Q Consensus 432 ~~~l~~i~~~~--ak~~~iwilGEy 454 (645)
.+.+++.+... +...+++.+.+.
T Consensus 489 ~~~l~~~~~~~~~~~~~ai~~l~~~ 513 (852)
T 4fdd_A 489 VFAFSKYQHKNLLILYDAIGTLADS 513 (852)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHH
Confidence 77776544332 223345555443
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.40 E-value=7.4e-11 Score=127.88 Aligned_cols=326 Identities=16% Similarity=0.145 Sum_probs=225.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCC----Ccccc---HH--HHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhcCchh
Q psy8267 55 LSISTFQRALKDPNQLIRASALRVLSSI----RVPMI---IP--IVMLAIKDSSLDM-SPYVRKTAAHAIPKLYSLDPEQ 124 (645)
Q Consensus 55 L~iNsl~kDL~~~N~~iralALr~ls~I----~~~ei---~~--~l~~~I~~~l~d~-~pyVRK~Aalal~kl~~~~p~~ 124 (645)
+++..+.+.++++++.+|..|++.+.++ ..+.+ ++ .+++.+.+++.+. ++.||..|+.++.++...+++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3456677777888888998888888775 23322 11 3567777888888 8999999999999999877664
Q ss_pred H-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh---hhh--HHHHHHHHHHhcC-CCchhHHHHHHHHHHHHh
Q psy8267 125 K-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI---DMI--HKSYRKLCNLLVD-VDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 125 ~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~---~li--~~~~~kL~~~L~~-~~~W~Qv~iL~lL~~y~r 193 (645)
. .+.++.+.++|.++++.|...|+.++..++.+.. +.+ .+.+..|++.+.+ .++-.+...+..|..+++
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 3 3578889999999999999999999998875432 111 1235667888875 566677788888888874
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHh
Q psy8267 194 TQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHH 273 (645)
Q Consensus 194 ~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~ 273 (645)
.. +|.... ... ..++..+..++++.+..|...++.++.+
T Consensus 180 ~~--~~~~~~-----------------------------------~~~----~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 180 GK--SPPPEF-----------------------------------AKV----SPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp CS--SSCCCG-----------------------------------GGT----GGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CC--CCCCCH-----------------------------------HHH----HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 20 021100 000 1134444566778888999999999888
Q ss_pred cCCh--HHH-----HHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccc----hhh-hhceEE-EcCCCChHHHHHHHH
Q psy8267 274 LAPR--REV-----AIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRAL----FVP-YLKSFY-VRSSDPTHVKTLKLE 339 (645)
Q Consensus 274 l~~~--~~~-----~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~----~~~-~~~~f~-~l~~d~~~Ir~~kLd 339 (645)
+... ... ..+.+.|+.+|. .++++|..++.++..++...+.. ++. -+..+. ++.+++..+|..++.
T Consensus 219 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~ 298 (450)
T 2jdq_A 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298 (450)
T ss_dssp HTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHH
Confidence 7642 111 135678888885 67899999999999998654432 111 112222 345667889999999
Q ss_pred HHHHccC--cCCHH-----HHHHHHHHhhccccHHHHHHHHHHHHHHHhhc-cccH-----HHHHHHHHHhhccCChhhH
Q psy8267 340 LLTTLAS--ETSIA-----SILREFQTYISSVDKAFVAATVQAIGKCAANI-AQVT-----DTCLTGLVSLLSYSDEAVV 406 (645)
Q Consensus 340 lL~~L~~--~~Nv~-----~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~-~~~~-----~~~v~~ll~LL~~~~~~v~ 406 (645)
.|..++. +.+.+ .++..|...+.+.+++++.+++.+++.++... +... ..++..|++++...+..+.
T Consensus 299 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999984 33333 34557777788889999999999999998753 2222 2366778888888777788
Q ss_pred HHHHHHHHHHhhcCC
Q psy8267 407 AESVVVIKNLLQTQP 421 (645)
Q Consensus 407 ~e~v~~i~~il~~~p 421 (645)
..++..+..++...+
T Consensus 379 ~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 379 QVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhch
Confidence 888888887776443
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.33 E-value=3.4e-10 Score=122.74 Aligned_cols=351 Identities=14% Similarity=0.165 Sum_probs=238.4
Q ss_pred HHHHHcCCCCHHHHHHHHHHHhCCCc---cccHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHhh--------------
Q psy8267 59 TFQRALKDPNQLIRASALRVLSSIRV---PMIIPIVMLAIKDSSLD--MSPYVRKTAAHAIPKLYS-------------- 119 (645)
Q Consensus 59 sl~kDL~~~N~~iralALr~ls~I~~---~ei~~~l~~~I~~~l~d--~~pyVRK~Aalal~kl~~-------------- 119 (645)
.+...+.++|+.+|-.|-..|..+.. ++....+ ...+.+ .++.||..|+..+-++.+
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L----~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVEL----SRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHH----HHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 45556789999999999888887654 3433333 333333 378999999999888753
Q ss_pred --cCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC----hh-hhhhhHHHHHHHHHHhcCC--CchhHHHHHHHHHH
Q psy8267 120 --LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC----PE-RIDMIHKSYRKLCNLLVDV--DEWGQVFILNMLTR 190 (645)
Q Consensus 120 --~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~----~~-~~~li~~~~~kL~~~L~~~--~~W~Qv~iL~lL~~ 190 (645)
..++..+.+.+.+...|.+.++.| ..+..++.++. |+ .|. ..+..|+..+.+. ++-.+...+..|..
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~---~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP---ELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT---THHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH---HHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 344555667777888888888888 76666666665 32 342 2244566667666 55556677888887
Q ss_pred HHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCC--ChHHHHHHH
Q psy8267 191 YARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSR--NAAVVMAVA 268 (645)
Q Consensus 191 y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~--n~aVv~ea~ 268 (645)
.+.... |. .+++....++..+...+++. ++.|..+|+
T Consensus 157 l~~~~~--~~---------------------------------------~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~ 195 (462)
T 1ibr_B 157 ICQDID--PE---------------------------------------QLQDKSNEILTAIIQGMRKEEPSNNVKLAAT 195 (462)
T ss_dssp HHHHSC--GG---------------------------------------GTGGGHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred HHHhCC--ch---------------------------------------hhHhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 774310 10 01222344666666777777 788999999
Q ss_pred HHHHhcCC--hHH-----H-HHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhhhc-eEE-----EcCCCChHH
Q psy8267 269 QLFHHLAP--RRE-----V-AIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPYLK-SFY-----VRSSDPTHV 333 (645)
Q Consensus 269 ~~i~~l~~--~~~-----~-~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~~~-~f~-----~l~~d~~~I 333 (645)
+++..+-. ... . ..+...+..++. .++++|-.+++++..++..+|+.|.+|+. .++ +..+++..+
T Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 275 (462)
T 1ibr_B 196 NALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEV 275 (462)
T ss_dssp HHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 98876422 111 1 224555566664 56799999999999999999988888777 542 235677889
Q ss_pred HHHHHHHHHHccCcC---------------------------CHHHHHHHHHHhhccc-------cHHHHHHHHHHHHHH
Q psy8267 334 KTLKLELLTTLASET---------------------------SIASILREFQTYISSV-------DKAFVAATVQAIGKC 379 (645)
Q Consensus 334 r~~kLdlL~~L~~~~---------------------------Nv~~Il~EL~~yl~~~-------d~~~~~~~i~~I~~l 379 (645)
|..+++.+..++... .+..++.-|...+.+. +...|..+...++.+
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 999999999888642 1255666666666543 235788999999999
Q ss_pred Hhhcccc-HHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCC-c----chHHHHHHHHHhhccCChHHHHHHHHHHHhc
Q psy8267 380 AANIAQV-TDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQP-E----AYTDIIRHMVRLSDSITVPTARAAILWLLGE 453 (645)
Q Consensus 380 a~k~~~~-~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p-~----~~~~~i~~L~~~l~~i~~~~ak~~~iwilGE 453 (645)
+..++.. ....+..+.+.+...+..+...++..+..+..... + ....++..+...+.+ ..+.+|.+++|.+|.
T Consensus 356 ~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 356 ATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGR 434 (462)
T ss_dssp HHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 9888732 23455555666766666788888888888876432 2 124577778888876 358899999999999
Q ss_pred ccccCC
Q psy8267 454 YSHLVP 459 (645)
Q Consensus 454 y~~~i~ 459 (645)
|++...
T Consensus 435 ~~~~~~ 440 (462)
T 1ibr_B 435 ICELLP 440 (462)
T ss_dssp HHHHGG
T ss_pred HHHhcc
Confidence 987543
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.32 E-value=3.1e-10 Score=126.50 Aligned_cols=361 Identities=16% Similarity=0.160 Sum_probs=247.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhCCC--cc-ccHH-----HHHHHHHhhcCCCC-hHHHHHHHHHHHHHhhcCchh
Q psy8267 54 LLSISTFQRALKDPNQLIRASALRVLSSIR--VP-MIIP-----IVMLAIKDSSLDMS-PYVRKTAAHAIPKLYSLDPEQ 124 (645)
Q Consensus 54 lL~iNsl~kDL~~~N~~iralALr~ls~I~--~~-ei~~-----~l~~~I~~~l~d~~-pyVRK~Aalal~kl~~~~p~~ 124 (645)
...+..+.+.|.++|+.+|..|+++++++. .. +-.. -+++.+.+++.+++ +.||..|+.++.++...+++.
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 345677888899999999998888887762 11 1111 23566778888876 999999999999999877765
Q ss_pred HH-----HHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh---hhhH--HHHHHHHHHh-cCCCchhHHHHHHHHHHHHh
Q psy8267 125 KE-----ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI---DMIH--KSYRKLCNLL-VDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 125 ~~-----~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~---~li~--~~~~kL~~~L-~~~~~W~Qv~iL~lL~~y~r 193 (645)
.. +.++.+..+|.++++.|...|+.++..++.+.. +.+. +.+..|++.| .+.++-.+...+..|..+++
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 32 478889999999999999999999999874422 2221 2456788888 45566667778888888874
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHh
Q psy8267 194 TQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHH 273 (645)
Q Consensus 194 ~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~ 273 (645)
.. |.... ......+..+..++++.+..|...|+.++.+
T Consensus 233 ~~---~~~~~---------------------------------------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~ 270 (528)
T 4b8j_A 233 GK---PQPSF---------------------------------------EQTRPALPALARLIHSNDEEVLTDACWALSY 270 (528)
T ss_dssp SS---SCCCH---------------------------------------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CC---CCCcH---------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 31 21100 0011245555677888999999999999988
Q ss_pred cCCh--HHHH-----HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhh-----hhceEE-EcCCC-ChHHHHHHH
Q psy8267 274 LAPR--REVA-----IIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVP-----YLKSFY-VRSSD-PTHVKTLKL 338 (645)
Q Consensus 274 l~~~--~~~~-----~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~-----~~~~f~-~l~~d-~~~Ir~~kL 338 (645)
+... .... .+...|+.+|. .++.++.-++.+|..++...+...+. -+..+. ++.++ +..+|..+.
T Consensus 271 l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~ 350 (528)
T 4b8j_A 271 LSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEAC 350 (528)
T ss_dssp HTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHH
Confidence 8642 2122 25678899996 66899999999999998754432211 112222 34455 789999999
Q ss_pred HHHHHccCc--CCHHH-----HHHHHHHhhccccHHHHHHHHHHHHHHHhhc-cccH-----HHHHHHHHHhhccCChhh
Q psy8267 339 ELLTTLASE--TSIAS-----ILREFQTYISSVDKAFVAATVQAIGKCAANI-AQVT-----DTCLTGLVSLLSYSDEAV 405 (645)
Q Consensus 339 dlL~~L~~~--~Nv~~-----Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~-~~~~-----~~~v~~ll~LL~~~~~~v 405 (645)
..|..|+.. ..+.. ++..|...+.+.|.+++.+++.+++.++..- +... ..++..++++|...+..+
T Consensus 351 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v 430 (528)
T 4b8j_A 351 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRI 430 (528)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 999999852 22333 3456777888889999999999999998762 3222 245778999999988888
Q ss_pred HHHHHHHHHHHhhcCCcc----------hHHH------HHHHHHhhccCChHHHHHHHHHHHhccccc
Q psy8267 406 VAESVVVIKNLLQTQPEA----------YTDI------IRHMVRLSDSITVPTARAAILWLLGEYSHL 457 (645)
Q Consensus 406 ~~e~v~~i~~il~~~p~~----------~~~~------i~~L~~~l~~i~~~~ak~~~iwilGEy~~~ 457 (645)
...++..+.+|++..+.. .... +..+.++. +-..++++..+.|++..|...
T Consensus 431 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 431 VTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCCC
Confidence 888888888888754431 1111 22233322 224566777778999887653
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.32 E-value=5.1e-09 Score=122.89 Aligned_cols=426 Identities=12% Similarity=0.131 Sum_probs=274.9
Q ss_pred hHHHHHHh-ccCCchhHHHHHHHHHHhcccC-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCc-------------
Q psy8267 20 FPAVVKNV-VSKNIEVKKLVYVYLARYAEEQ-QDLALLSISTFQRALKDPNQLIRASALRVLSSIRV------------- 84 (645)
Q Consensus 20 f~~vvkli-~s~~~~~KkL~Yl~l~~~~~~~-~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~------------- 84 (645)
+.+++... .|+|-..|+-+--++..+.+.+ |+.......-+.. .+.++.+|-+|...+.+.-.
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 34556666 7889999999999998876543 4433222222221 23578999999998888621
Q ss_pred ------cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcC-ch-hHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHC
Q psy8267 85 ------PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD-PE-QKEELVLVIEKLLQDK-TTLVVGSAVMAFEEVC 155 (645)
Q Consensus 85 ------~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~-p~-~~~~~~~~l~~lL~D~-~~~V~~sav~~l~ei~ 155 (645)
++.-+.+-..+.+++.++++.||++++.++..+.+.+ |+ ..+++++.+.+++.+. ++.+.-.|+.++..++
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~ 163 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC 163 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2233445566677788999999999999999998864 63 4578888889999988 9999888888888777
Q ss_pred hh---h----hhhhHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcc
Q psy8267 156 PE---R----IDMIHKSYRKLCNLLVDV--DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDET 226 (645)
Q Consensus 156 ~~---~----~~li~~~~~kL~~~L~~~--~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~ 226 (645)
.+ . .......+..+...+.+. ++=.+...++.|..+... ..... +.
T Consensus 164 ~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~--~~~~~-~~---------------------- 218 (861)
T 2bpt_A 164 ESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF--IKNNM-ER---------------------- 218 (861)
T ss_dssp HTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG--CHHHH-TS----------------------
T ss_pred HcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH--HHHHc-cC----------------------
Confidence 42 1 122333445566666666 444556677777665411 00000 00
Q ss_pred cccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcC---Ch---HHHH-HHHHHHHHHhC-CChhHH
Q psy8267 227 TRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLA---PR---REVA-IIAKALVRLLR-SSREVQ 298 (645)
Q Consensus 227 ~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~---~~---~~~~-~~~~~L~~lL~-s~~nir 298 (645)
+.....+++.+...+++.+..+..++++++..+. +. ..+. .+...+...+. .++++|
T Consensus 219 ---------------~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr 283 (861)
T 2bpt_A 219 ---------------EGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVA 283 (861)
T ss_dssp ---------------HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHH
T ss_pred ---------------hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 0001234555555667777888777777665442 21 2344 45555555564 567899
Q ss_pred HHHHHHHHHHHhhc-----------------ccchhhhhce----EE-EcC-------CCChHHHHHHHHHHHHccC---
Q psy8267 299 TVVLTTIASLAVKR-----------------RALFVPYLKS----FY-VRS-------SDPTHVKTLKLELLTTLAS--- 346 (645)
Q Consensus 299 yv~L~~l~~l~~~~-----------------p~~~~~~~~~----f~-~l~-------~d~~~Ir~~kLdlL~~L~~--- 346 (645)
..+++.+..++... +..+.+++.. ++ .+. +|+..+|..+.+.|..++.
T Consensus 284 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~ 363 (861)
T 2bpt_A 284 SMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG 363 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc
Confidence 99999988887642 1122222221 11 111 2346899988888877765
Q ss_pred cCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc-cc----HHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcC-
Q psy8267 347 ETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIA-QV----TDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQ- 420 (645)
Q Consensus 347 ~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~-~~----~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~- 420 (645)
+.-+..+++-+...+.+.+...|+.++.++|.++.... .. ....+..+++.+.+....+...+...+.++....
T Consensus 364 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777888888999999999999986542 22 2345566677777777777776666666555431
Q ss_pred -----CcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCC--------CchHHHHHHHHHhhcCC--chHHHHHHH
Q psy8267 421 -----PEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVP--------ALGPDVLRKAAITFVNE--EDIVKLQVL 485 (645)
Q Consensus 421 -----p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~--------~~~~diLr~l~~~f~~e--~~~vk~~iL 485 (645)
+.....++..+.+.+.+- +.++.+++|.++.+++... ...++++..+.+.+... ++.||...+
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~ 521 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAF 521 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHH
Confidence 334567788888888652 7888888999988765432 23567888888766633 367887777
Q ss_pred Hhhh
Q psy8267 486 NLAP 489 (645)
Q Consensus 486 ~~~~ 489 (645)
.+..
T Consensus 522 ~al~ 525 (861)
T 2bpt_A 522 SALT 525 (861)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.32 E-value=2.9e-09 Score=125.24 Aligned_cols=417 Identities=15% Similarity=0.118 Sum_probs=253.9
Q ss_pred CCchhHHHHHHHHHHhcccCc-hHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCcc---c----cHHHHHHHHHhhcCC
Q psy8267 30 KNIEVKKLVYVYLARYAEEQQ-DLALLSISTFQRALKDPNQLIRASALRVLSSIRVP---M----IIPIVMLAIKDSSLD 101 (645)
Q Consensus 30 ~~~~~KkL~Yl~l~~~~~~~~-dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~---e----i~~~l~~~I~~~l~d 101 (645)
.+...|+-+.-.+..+++..+ +..-.+.+.+.+-+.|+++.+|..|+.+++.+... + ..+.+++.+.+++.|
T Consensus 340 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d 419 (876)
T 1qgr_A 340 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419 (876)
T ss_dssp TCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456778777666666655333 33335667788888999999999999999988642 2 345678888999999
Q ss_pred CChHHHHHHHHHHHHHhhcCc------hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhh-----------------
Q psy8267 102 MSPYVRKTAAHAIPKLYSLDP------EQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER----------------- 158 (645)
Q Consensus 102 ~~pyVRK~Aalal~kl~~~~p------~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~----------------- 158 (645)
+++.||..|+.++.++....+ +..+.+++.+.+.|.|. +.|..+|+.++..++...
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~ 498 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYC 498 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCS
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchh
Confidence 999999999999999998644 34567888888889885 888888888887766431
Q ss_pred h-hhhHHHHHHHHHHhcCCC--c-hhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccc
Q psy8267 159 I-DMIHKSYRKLCNLLVDVD--E-WGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNET 234 (645)
Q Consensus 159 ~-~li~~~~~kL~~~L~~~~--~-W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~ 234 (645)
. .++...+..|.+.+.+.+ + =.....++.+....+.. +..
T Consensus 499 l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~---~~~--------------------------------- 542 (876)
T 1qgr_A 499 LSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS---AKD--------------------------------- 542 (876)
T ss_dssp STTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC---CST---------------------------------
T ss_pred hhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC---chh---------------------------------
Confidence 1 223344555666666542 2 23455777777776420 100
Q ss_pred cccccccChhHHHHHHhhhhhhc----------CCC-----hHH---HHHHHHHHHhcCC-h---HHHHHHHHHHHHHhC
Q psy8267 235 SQVSTELDPDHRLLLKNAKPLLQ----------SRN-----AAV---VMAVAQLFHHLAP-R---REVAIIAKALVRLLR 292 (645)
Q Consensus 235 ~~~~~~~d~d~~~ll~~~~~ll~----------s~n-----~aV---v~ea~~~i~~l~~-~---~~~~~~~~~L~~lL~ 292 (645)
..+.+..++..+...++ +.+ +.+ .+++...+...-+ . ..+..+...+..+++
T Consensus 543 ------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~ 616 (876)
T 1qgr_A 543 ------CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQ 616 (876)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHH
Confidence 00111222222211111 111 111 2333333332222 1 134567777788886
Q ss_pred CC---hhHHHHHHHHHHHHHhhcccchhhhhceEE-----EcCC-CChHHHHHHHHHHHHccCcC--C----HHHHHHHH
Q psy8267 293 SS---REVQTVVLTTIASLAVKRRALFVPYLKSFY-----VRSS-DPTHVKTLKLELLTTLASET--S----IASILREF 357 (645)
Q Consensus 293 s~---~niryv~L~~l~~l~~~~p~~~~~~~~~f~-----~l~~-d~~~Ir~~kLdlL~~L~~~~--N----v~~Il~EL 357 (645)
+. +.+|--++..+..++...+.-|.+|+..++ ++.+ +...||..+++.+..++..- . +..++..|
T Consensus 617 ~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 696 (876)
T 1qgr_A 617 STAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLL 696 (876)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 43 368888999999888766666777666542 2333 36789999999988877531 2 45666777
Q ss_pred HHhhcc--ccHHHHHHHHHHHHHHHhhccccHHHHHH----HHHHhhccCC----h-------hhHHHHHHHHHHHhhc-
Q psy8267 358 QTYISS--VDKAFVAATVQAIGKCAANIAQVTDTCLT----GLVSLLSYSD----E-------AVVAESVVVIKNLLQT- 419 (645)
Q Consensus 358 ~~yl~~--~d~~~~~~~i~~I~~la~k~~~~~~~~v~----~ll~LL~~~~----~-------~v~~e~v~~i~~il~~- 419 (645)
.+.+.+ .+.+.+..++.++|.++...++....++. .+.+.+.... + .+...+...+..+++.
T Consensus 697 ~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~ 776 (876)
T 1qgr_A 697 LENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGL 776 (876)
T ss_dssp HHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765 46789999999999999876655444444 4444443321 1 2333333334433332
Q ss_pred --C--------Ccch---HHHHHHHHHhhccCC-hHHHHHHHHHHHhcccccCCC--c----hHHHHHHHHH-hhcCCch
Q psy8267 420 --Q--------PEAY---TDIIRHMVRLSDSIT-VPTARAAILWLLGEYSHLVPA--L----GPDVLRKAAI-TFVNEED 478 (645)
Q Consensus 420 --~--------p~~~---~~~i~~L~~~l~~i~-~~~ak~~~iwilGEy~~~i~~--~----~~diLr~l~~-~f~~e~~ 478 (645)
. +... ..++..+....++.. +..+|.+++-++|+.+...+. + .+.++..+++ .+.+.++
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~ 856 (876)
T 1qgr_A 777 KGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTN 856 (876)
T ss_dssp HCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCH
T ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCH
Confidence 1 1111 223333333334332 567788888999988765543 1 2245666776 6678889
Q ss_pred HHHHHHHHhhh
Q psy8267 479 IVKLQVLNLAP 489 (645)
Q Consensus 479 ~vk~~iL~~~~ 489 (645)
+||.....+..
T Consensus 857 ~~r~~a~~a~~ 867 (876)
T 1qgr_A 857 KAKTLARWATK 867 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99987776654
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.30 E-value=7e-10 Score=120.16 Aligned_cols=324 Identities=12% Similarity=0.114 Sum_probs=231.5
Q ss_pred hHHHHHHhccCCchhHHHHHHHHHHhcc--cCchHH--H---HHHHHHHHHcCCC-CHHHHHHHHHHHhCCCc--cccH-
Q psy8267 20 FPAVVKNVVSKNIEVKKLVYVYLARYAE--EQQDLA--L---LSISTFQRALKDP-NQLIRASALRVLSSIRV--PMII- 88 (645)
Q Consensus 20 f~~vvkli~s~~~~~KkL~Yl~l~~~~~--~~~dl~--l---L~iNsl~kDL~~~-N~~iralALr~ls~I~~--~ei~- 88 (645)
.+..++.+.+++...+..+...+..++. .++... + -.+..+.+-|+++ |+.+|..|+++++++.. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 7788999999999999999888877643 233221 1 2466777788888 89999999999998754 2211
Q ss_pred ----HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH-----HHHHHHHHhhcC-CChhHHHHHHHHHHHHChhh
Q psy8267 89 ----PIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE-----ELVLVIEKLLQD-KTTLVVGSAVMAFEEVCPER 158 (645)
Q Consensus 89 ----~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~-----~~~~~l~~lL~D-~~~~V~~sav~~l~ei~~~~ 158 (645)
...++.+.+++.++++.||..|+.++..+...+|+..+ +.++.+.++|.+ .++.|...|+.++..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 23677788899999999999999999999987776432 457788889985 78999999999999988322
Q ss_pred -----hhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccc
Q psy8267 159 -----IDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNE 233 (645)
Q Consensus 159 -----~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~ 233 (645)
.....+.+..|++.+.+.++..+......|..++.. .+..
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~---~~~~-------------------------------- 226 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG---PNDK-------------------------------- 226 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---SHHH--------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC---CcHH--------------------------------
Confidence 223345567788888888888888888888877631 0000
Q ss_pred ccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh-HH-HH-----HHHHHHHHHhC-CChhHHHHHHHHH
Q psy8267 234 TSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR-RE-VA-----IIAKALVRLLR-SSREVQTVVLTTI 305 (645)
Q Consensus 234 ~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~-~~-~~-----~~~~~L~~lL~-s~~niryv~L~~l 305 (645)
...+.+ ..++..+..++++.+..|...|+.++.++... .. .. .+.+.|+.+|. .++.+|.-++.+|
T Consensus 227 ---~~~~~~---~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L 300 (450)
T 2jdq_A 227 ---IQAVID---AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300 (450)
T ss_dssp ---HHHHHH---TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ---HHHHHH---cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 000000 01234445667788899999999999887642 11 11 36678888886 5679999999999
Q ss_pred HHHHhhcccchh-----hhhceEE-EcCCCChHHHHHHHHHHHHccCc---CCHHH-----HHHHHHHhhccccHHHHHH
Q psy8267 306 ASLAVKRRALFV-----PYLKSFY-VRSSDPTHVKTLKLELLTTLASE---TSIAS-----ILREFQTYISSVDKAFVAA 371 (645)
Q Consensus 306 ~~l~~~~p~~~~-----~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~---~Nv~~-----Il~EL~~yl~~~d~~~~~~ 371 (645)
..++...++..+ .-+..+. .+.+++..+|..+...|..++.. .+++. ++..|...+.+.|.+++..
T Consensus 301 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 380 (450)
T 2jdq_A 301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQV 380 (450)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 999864443221 1122222 34566788999999999999754 33443 5567778888889999999
Q ss_pred HHHHHHHHHhhcc
Q psy8267 372 TVQAIGKCAANIA 384 (645)
Q Consensus 372 ~i~~I~~la~k~~ 384 (645)
++.+++.++...+
T Consensus 381 a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 381 ALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhch
Confidence 9999998886543
No 17
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.30 E-value=1.5e-10 Score=118.19 Aligned_cols=128 Identities=16% Similarity=0.077 Sum_probs=90.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHH-H
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIE-K 134 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~-~ 134 (645)
+++.+.+.|.|+|+.+|..|+++|+.++.++ ..+.+.+++.|+++.||..|+.++.++.. .++..+.+++.+. .
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQD----AVRLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCEDNVFNILNNM 98 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCch----HHHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccchHHHHHHHHH
Confidence 4678889999999999999999999999655 45556788899999999999999988753 3344556666666 4
Q ss_pred hhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy8267 135 LLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNML 188 (645)
Q Consensus 135 lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL 188 (645)
+++|+++.|..+|+.++..++.............|...|.+.+++.+...+..|
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL 152 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAI 152 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 678999999999999988776432111111223344444444444444444444
No 18
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.30 E-value=2.5e-08 Score=117.15 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=105.4
Q ss_pred CCcccchHHHHHHhccC--CchhHHHHHHHHHHhcccC-ch----HHHHHHHHHHHHcCCC--CHHHHHHHHHHHhCCCc
Q psy8267 14 RDASDLFPAVVKNVVSK--NIEVKKLVYVYLARYAEEQ-QD----LALLSISTFQRALKDP--NQLIRASALRVLSSIRV 84 (645)
Q Consensus 14 ~dvs~lf~~vvkli~s~--~~~~KkL~Yl~l~~~~~~~-~d----l~lL~iNsl~kDL~~~--N~~iralALr~ls~I~~ 84 (645)
.....+++.+++++.++ +...|+.+...+..+.+.- ++ ..-.++..+.+-+.++ ++.+|..|+++++++..
T Consensus 124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45788999999999988 8888887777776665432 22 2334456677777776 79999999999987532
Q ss_pred ---ccc-----HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH----H-HHHHHHHHhhcCCChhHHHHHHHHH
Q psy8267 85 ---PMI-----IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK----E-ELVLVIEKLLQDKTTLVVGSAVMAF 151 (645)
Q Consensus 85 ---~ei-----~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~----~-~~~~~l~~lL~D~~~~V~~sav~~l 151 (645)
..+ .+.+++.+.+.+.|.++.||+.|+.++.++....|+.. . .+++.+...+.|.++.|...|+..+
T Consensus 204 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 111 12467777788889999999999999999998887653 3 5667777778888999988888777
Q ss_pred HHHC
Q psy8267 152 EEVC 155 (645)
Q Consensus 152 ~ei~ 155 (645)
..++
T Consensus 284 ~~l~ 287 (876)
T 1qgr_A 284 SNVC 287 (876)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.29 E-value=4e-09 Score=129.53 Aligned_cols=429 Identities=9% Similarity=0.048 Sum_probs=274.7
Q ss_pred ccchHHHHHHhccCCchhHHHHHHHHHHhcccC-----chHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC---ccccH
Q psy8267 17 SDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQ-----QDLALLSISTFQRALKDPNQLIRASALRVLSSIR---VPMII 88 (645)
Q Consensus 17 s~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~-----~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~---~~ei~ 88 (645)
+.-+...+..+.|+|-..|+.+--.+......+ ++..--++..+.+-|.|+|+.+|..|+.+++.+. .+...
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 455778888899999999999877666554332 2333355667888899999999999999988753 23456
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCc-h---------hHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHChh
Q psy8267 89 PIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP-E---------QKEELVLVIEKLLQD-KTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 89 ~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p-~---------~~~~~~~~l~~lL~D-~~~~V~~sav~~l~ei~~~ 157 (645)
+.+.+.+.+.+.|+++.||..|+.++..+....+ + ..+++++.+.+.+.| +++.+...|+.++.+++..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 7788888899999999999999999999887544 3 257788888899985 8889999999999988743
Q ss_pred h---h-hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccc
Q psy8267 158 R---I-DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNE 233 (645)
Q Consensus 158 ~---~-~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~ 233 (645)
. . ..+......++..|.+.+++.+...++.|..++.. ..+ .+
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~------~~~----------------~~------------ 210 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS------CGN----------------IV------------ 210 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT------C--------------------------------
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh------cCH----------------HH------------
Confidence 2 2 22344556677778888999999999999888732 100 00
Q ss_pred ccccccccChhHHHHHHhhhhhhcCCChHH---HHHHHHHHHhcCCh---HHHHHHHHHHHHHhC-CChhHHHHHHHHHH
Q psy8267 234 TSQVSTELDPDHRLLLKNAKPLLQSRNAAV---VMAVAQLFHHLAPR---REVAIIAKALVRLLR-SSREVQTVVLTTIA 306 (645)
Q Consensus 234 ~~~~~~~~d~d~~~ll~~~~~ll~s~n~aV---v~ea~~~i~~l~~~---~~~~~~~~~L~~lL~-s~~niryv~L~~l~ 306 (645)
++.-+..+++.+.. ..+..+ .++++..+....+. ..+..+.+.+...+. .++++|-.++..+.
T Consensus 211 -------~~~~l~~l~~~L~~---~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~ 280 (1230)
T 1u6g_C 211 -------FVDLIEHLLSELSK---NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 280 (1230)
T ss_dssp -------CTTHHHHHHHHHHH---TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 11112223332211 111112 23444333332222 234567788888885 66899999999999
Q ss_pred HHHhhcccchhhhhceEE------EcC------------------------------------CCChHHHHHHHHHHHHc
Q psy8267 307 SLAVKRRALFVPYLKSFY------VRS------------------------------------SDPTHVKTLKLELLTTL 344 (645)
Q Consensus 307 ~l~~~~p~~~~~~~~~f~------~l~------------------------------------~d~~~Ir~~kLdlL~~L 344 (645)
.++...++.+.+|+..+. +.+ +....+|+.+++.|..+
T Consensus 281 ~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l 360 (1230)
T 1u6g_C 281 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV 360 (1230)
T ss_dssp HHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHH
Confidence 998877765544433221 000 00135799999999888
Q ss_pred cCcC--CHHHH----HHHHHHhhccccHHHHHHHHHHHHHHHhhccc-----------------------cHHHHHHHHH
Q psy8267 345 ASET--SIASI----LREFQTYISSVDKAFVAATVQAIGKCAANIAQ-----------------------VTDTCLTGLV 395 (645)
Q Consensus 345 ~~~~--Nv~~I----l~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~-----------------------~~~~~v~~ll 395 (645)
+... ....+ +..|..++.+.+.++|..++.+++.+...... .....+..+.
T Consensus 361 ~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 440 (1230)
T 1u6g_C 361 VSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440 (1230)
T ss_dssp HTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHH
Confidence 7632 23333 44555666777889999999999888765432 1123445555
Q ss_pred HhhccCChhhHHHHHHHHHHHhhcCCc----chHHHHHHHHHhhccCCh-HHHHHHHHHHHhcccccC-CC----chHHH
Q psy8267 396 SLLSYSDEAVVAESVVVIKNLLQTQPE----AYTDIIRHMVRLSDSITV-PTARAAILWLLGEYSHLV-PA----LGPDV 465 (645)
Q Consensus 396 ~LL~~~~~~v~~e~v~~i~~il~~~p~----~~~~~i~~L~~~l~~i~~-~~ak~~~iwilGEy~~~i-~~----~~~di 465 (645)
+.+.+....+...++..+..++...|+ ....++..+.+.+.+... +.++..++-.++...... ++ ..+.+
T Consensus 441 ~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~l 520 (1230)
T 1u6g_C 441 KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 520 (1230)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTT
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHH
Confidence 668777777888888888888876654 235667777777765432 344433232333221111 11 12234
Q ss_pred HHHHHHhhcCCchHHHHHHHHhhh
Q psy8267 466 LRKAAITFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 466 Lr~l~~~f~~e~~~vk~~iL~~~~ 489 (645)
+..+.+.+.+....|+...+.++.
T Consensus 521 lp~L~~~l~d~~~~v~~~al~~l~ 544 (1230)
T 1u6g_C 521 VPPVVACVGDPFYKITSEALLVTQ 544 (1230)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcccchHHHHHHHHHHH
Confidence 555566666667777766655544
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.29 E-value=2.3e-10 Score=127.83 Aligned_cols=325 Identities=17% Similarity=0.188 Sum_probs=229.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCCc----cc---cH-HHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhcCchhH-
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSSIRV----PM---II-PIVMLAIKDSSLDM-SPYVRKTAAHAIPKLYSLDPEQK- 125 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~I~~----~e---i~-~~l~~~I~~~l~d~-~pyVRK~Aalal~kl~~~~p~~~- 125 (645)
.+..+.+.|.++|+.+|-.|+.+++++.. +. ++ ..+++.+.+++.++ ++.||..|+.++.++...+++..
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 35667777889999999888888887632 21 11 12467778889987 89999999999999998777653
Q ss_pred ----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh---hhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhc
Q psy8267 126 ----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI---DMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQF 196 (645)
Q Consensus 126 ----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~---~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~ 196 (645)
.+.++.+..+|.+.++.|...|+.++..++.+.. +.+ ++.+..|++.|.+.++-.+...+..|..+++..
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~- 246 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK- 246 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS-
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC-
Confidence 3457888899999999999999999999875421 211 234567888888877667778888888887420
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCC
Q psy8267 197 TDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP 276 (645)
Q Consensus 197 ~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~ 276 (645)
+|.. . . .....++..+..++.+.+..|...|+.++.++..
T Consensus 247 -~~~~-~-----------------------------------~---~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 247 -KPQP-D-----------------------------------W---SVVSQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp -SSCC-C-----------------------------------H---HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred -CCCC-c-----------------------------------H---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 0110 0 0 0011234445567788889999999998887753
Q ss_pred --hHHHH-----HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccc----hh-hhhceEE-EcCCCChHHHHHHHHHHH
Q psy8267 277 --RREVA-----IIAKALVRLLR-SSREVQTVVLTTIASLAVKRRAL----FV-PYLKSFY-VRSSDPTHVKTLKLELLT 342 (645)
Q Consensus 277 --~~~~~-----~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~----~~-~~~~~f~-~l~~d~~~Ir~~kLdlL~ 342 (645)
..... .+...|+.+|. .++.+|..++.+|..++...+.. +. .-+..+. ++.+++..+|..++..|.
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22222 35578888885 66899999999999998654432 11 1122222 455667899999999999
Q ss_pred HccC--cCCHHH-----HHHHHHHhhccccHHHHHHHHHHHHHHHhhccc---cH-----HHHHHHHHHhhccCChhhHH
Q psy8267 343 TLAS--ETSIAS-----ILREFQTYISSVDKAFVAATVQAIGKCAANIAQ---VT-----DTCLTGLVSLLSYSDEAVVA 407 (645)
Q Consensus 343 ~L~~--~~Nv~~-----Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~---~~-----~~~v~~ll~LL~~~~~~v~~ 407 (645)
.++. +.++.. ++..|...+.+.+.+++..++.+|+.++..... .. ..++..++.++...+..+..
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 446 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 446 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 9985 333333 445777888888999999999999999875432 11 23677888999888878888
Q ss_pred HHHHHHHHHhhcCC
Q psy8267 408 ESVVVIKNLLQTQP 421 (645)
Q Consensus 408 e~v~~i~~il~~~p 421 (645)
.+...+..++...+
T Consensus 447 ~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 447 VTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 88888888886544
No 21
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.29 E-value=1.1e-09 Score=134.37 Aligned_cols=429 Identities=11% Similarity=0.125 Sum_probs=275.1
Q ss_pred cchHHHHHHhccCCchhHHHHHHHHHHhcccCch-HHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC---ccc-------
Q psy8267 18 DLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQD-LALLSISTFQRALKDPNQLIRASALRVLSSIR---VPM------- 86 (645)
Q Consensus 18 ~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~d-l~lL~iNsl~kDL~~~N~~iralALr~ls~I~---~~e------- 86 (645)
.+.+.+++.+.+++..+|+.+...+..+++.-++ ..--+++.+.+.+.|+++.+|..|.++++.+. .++
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~ 127 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence 4566778888899999999999999888765444 23356778888899999999998888887753 222
Q ss_pred --cHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHhhcCch----hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 87 --IIPIVMLAIKDSSLD-MSPYVRKTAAHAIPKLYSLDPE----QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 87 --i~~~l~~~I~~~l~d-~~pyVRK~Aalal~kl~~~~p~----~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
..+.+++.+.+++.| +++.+|..|+.++..+....++ ..+.+.+.+...|.|+++.|...|+.++..+.....
T Consensus 128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 578888999999984 8999999999999998865443 247788888999999999999999999988875322
Q ss_pred -hhhHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccccc
Q psy8267 160 -DMIHKSYRKLCNLLVDVDEWG-QVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQV 237 (645)
Q Consensus 160 -~li~~~~~kL~~~L~~~~~W~-Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~ 237 (645)
.++...+..+++.|.+.++|. ....++.+....+.. |..-.
T Consensus 208 ~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~---~~~~~---------------------------------- 250 (1230)
T 1u6g_C 208 NIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA---GHRIG---------------------------------- 250 (1230)
T ss_dssp ---CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS---SGGGT----------------------------------
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh---HHHHH----------------------------------
Confidence 122333455666665443331 223455555544320 21000
Q ss_pred ccccChhHHHHHHhhhhhhcCCChHHHHHHHHH---HHhcCCh---HHHHHHHHHHHHHhCCC-----------------
Q psy8267 238 STELDPDHRLLLKNAKPLLQSRNAAVVMAVAQL---FHHLAPR---REVAIIAKALVRLLRSS----------------- 294 (645)
Q Consensus 238 ~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~---i~~l~~~---~~~~~~~~~L~~lL~s~----------------- 294 (645)
++ ++ .++..+...++..+..|.-.+..+ +....+. ..+..+...+.+.+..+
T Consensus 251 ~~-l~----~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~ 325 (1230)
T 1u6g_C 251 EY-LE----KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA 325 (1230)
T ss_dssp TS-CT----THHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----------------
T ss_pred HH-HH----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccc
Confidence 00 11 123333333444555444333333 3322221 23455555555544211
Q ss_pred ---------------------hhHHHHHHHHHHHHHhhcccchhhhhceEE-----EcCCCChHHHHHHHHHHHHccCcC
Q psy8267 295 ---------------------REVQTVVLTTIASLAVKRRALFVPYLKSFY-----VRSSDPTHVKTLKLELLTTLASET 348 (645)
Q Consensus 295 ---------------------~niryv~L~~l~~l~~~~p~~~~~~~~~f~-----~l~~d~~~Ir~~kLdlL~~L~~~~ 348 (645)
.++|..+++.+..++...|+.|.+++..+. ...+....+|..+++.+..++...
T Consensus 326 ~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 405 (1230)
T 1u6g_C 326 DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT 405 (1230)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 246899999999998877776666665432 234556789999999887766421
Q ss_pred -------------------------CHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc----ccHHHHHHHHHHhhc
Q psy8267 349 -------------------------SIASILREFQTYISSVDKAFVAATVQAIGKCAANIA----QVTDTCLTGLVSLLS 399 (645)
Q Consensus 349 -------------------------Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~----~~~~~~v~~ll~LL~ 399 (645)
.+..|+.-+...+.+.+...|..++..++.++...+ +..+..+..++++|.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~ 485 (1230)
T 1u6g_C 406 RPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLN 485 (1230)
T ss_dssp CCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTT
T ss_pred ccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHc
Confidence 122334444445788888899999999999988754 345677788888888
Q ss_pred cCCh--hhHHHHHHHHHHHhhcC-Ccch----HHHHHHHHHhhccCChHHHHHHHHHHHhcccccCC--------C---c
Q psy8267 400 YSDE--AVVAESVVVIKNLLQTQ-PEAY----TDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVP--------A---L 461 (645)
Q Consensus 400 ~~~~--~v~~e~v~~i~~il~~~-p~~~----~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~--------~---~ 461 (645)
.... .+..+++..+..++... |+.. ..++..+.+.+.+ ..+.++..+++.+|+...... . +
T Consensus 486 d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 564 (1230)
T 1u6g_C 486 DKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD-PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPY 564 (1230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHhcCcccccccchHHH
Confidence 7653 67778888888777643 3422 2345555555555 334555555666665542211 1 2
Q ss_pred hHHHHHHHHHhh--cCCchHHHHHHHHhhh
Q psy8267 462 GPDVLRKAAITF--VNEEDIVKLQVLNLAP 489 (645)
Q Consensus 462 ~~diLr~l~~~f--~~e~~~vk~~iL~~~~ 489 (645)
.+.++..+...+ .+.++++|...+.++.
T Consensus 565 ~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg 594 (1230)
T 1u6g_C 565 IKDLFTCTIKRLKAADIDQEVKERAISCMG 594 (1230)
T ss_dssp HHHHHHHHHHHHSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 356777777777 6778899987776665
No 22
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.28 E-value=2e-08 Score=117.70 Aligned_cols=400 Identities=14% Similarity=0.135 Sum_probs=263.4
Q ss_pred ccchHHHHHHhcc--CCchhHHHHHHHHHHhccc-----------------CchHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy8267 17 SDLFPAVVKNVVS--KNIEVKKLVYVYLARYAEE-----------------QQDLALLSISTFQRALKDPNQLIRASALR 77 (645)
Q Consensus 17 s~lf~~vvkli~s--~~~~~KkL~Yl~l~~~~~~-----------------~~dl~lL~iNsl~kDL~~~N~~iralALr 77 (645)
..++......+.+ .+..+|+++-+++...... .++.---+-+.+.+-+.++++.+|..+.+
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~ 117 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQ 117 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 3445556666654 4688999999998877432 22323344566777788999999988777
Q ss_pred HHhCCCc---c-ccHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhc-Cch------hHHHHHHHHHHhhcCC--ChhH
Q psy8267 78 VLSSIRV---P-MIIPIVMLAIKDSSLDM-SPYVRKTAAHAIPKLYSL-DPE------QKEELVLVIEKLLQDK--TTLV 143 (645)
Q Consensus 78 ~ls~I~~---~-ei~~~l~~~I~~~l~d~-~pyVRK~Aalal~kl~~~-~p~------~~~~~~~~l~~lL~D~--~~~V 143 (645)
+++.|.. + .-.+.+++.+.+++.++ ++.+|..|+.++..+.+. .++ ..+.+.+.+...+.|. ++.|
T Consensus 118 ~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~v 197 (861)
T 2bpt_A 118 LIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAV 197 (861)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHH
T ss_pred HHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 7777632 2 24577888889999998 999999999999998874 333 3467788888889987 8899
Q ss_pred HHHHHHHHHHHCh---hhhh---hhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCC
Q psy8267 144 VGSAVMAFEEVCP---ERID---MIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGED 217 (645)
Q Consensus 144 ~~sav~~l~ei~~---~~~~---li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~ 217 (645)
..+|+.++..+.+ +..+ ........++..+.+.++-.+...++.|..+.... |..
T Consensus 198 r~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~---~~~---------------- 258 (861)
T 2bpt_A 198 RLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY---YTF---------------- 258 (861)
T ss_dssp HHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH---GGG----------------
T ss_pred HHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHH----------------
Confidence 9999988887632 2210 00112333445555544444556777777766431 210
Q ss_pred CCCCcCCcccccccccccccccccChhHH-HHHHhhhhhhcCCChHHHHHHHHHHHhcCCh-------------------
Q psy8267 218 KKPFYDDETTRDTKNETSQVSTELDPDHR-LLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR------------------- 277 (645)
Q Consensus 218 ~~~f~~~~~~~~~~~~~~~~~~~~d~d~~-~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~------------------- 277 (645)
+.+.+. .+++.+...+.+.+..|..+|+.++..+...
T Consensus 259 -----------------------~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (861)
T 2bpt_A 259 -----------------------MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSY 315 (861)
T ss_dssp -----------------------CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCC
T ss_pred -----------------------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhH
Confidence 111122 3444444556677788888887766544221
Q ss_pred ----HHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHhhcccchhhhhceEE--EcCCCChHHHHHHHHHHHH
Q psy8267 278 ----REVAIIAKALVRLLRS--------SREVQTVVLTTIASLAVKRRALFVPYLKSFY--VRSSDPTHVKTLKLELLTT 343 (645)
Q Consensus 278 ----~~~~~~~~~L~~lL~s--------~~niryv~L~~l~~l~~~~p~~~~~~~~~f~--~l~~d~~~Ir~~kLdlL~~ 343 (645)
..+..+...++..+.. +.++|..+.+.+..++...++.+-+.+..++ .+.+.+..+|..++..+..
T Consensus 316 ~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~ 395 (861)
T 2bpt_A 316 NFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGS 395 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 1124455666666642 2579999999999998876643322222222 2456678899999999999
Q ss_pred ccCcCC-------HHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc------ccHHHHHHHHHHhhccCChhhHHHHH
Q psy8267 344 LASETS-------IASILREFQTYISSVDKAFVAATVQAIGKCAANIA------QVTDTCLTGLVSLLSYSDEAVVAESV 410 (645)
Q Consensus 344 L~~~~N-------v~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~------~~~~~~v~~ll~LL~~~~~~v~~e~v 410 (645)
++.... ++.++..|...+.+.++.+|..++.++|+++...+ ......+..+++.+... ..+...+.
T Consensus 396 i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~ 474 (861)
T 2bpt_A 396 IMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCS 474 (861)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHH
Confidence 996543 34567777788888899999999999999987653 34567788888888765 55666666
Q ss_pred HHHHHHhhcCC----c----chHHHHHHHHHhhccCC-hHHHHHHHHHHHhcccccCC
Q psy8267 411 VVIKNLLQTQP----E----AYTDIIRHMVRLSDSIT-VPTARAAILWLLGEYSHLVP 459 (645)
Q Consensus 411 ~~i~~il~~~p----~----~~~~~i~~L~~~l~~i~-~~~ak~~~iwilGEy~~~i~ 459 (645)
..+..++...+ + ....++..+.+.+++.. ++.+|.++++.+|......+
T Consensus 475 ~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 67777766422 1 23566777778776532 36778777888887765443
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.27 E-value=9.1e-10 Score=122.94 Aligned_cols=328 Identities=11% Similarity=0.124 Sum_probs=232.6
Q ss_pred cccchHHHHHHhccCCchhHHHHHHHHHHhccc--CchH--HH--HHHHHHHHHcCCC-CHHHHHHHHHHHhCCCc--cc
Q psy8267 16 ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEE--QQDL--AL--LSISTFQRALKDP-NQLIRASALRVLSSIRV--PM 86 (645)
Q Consensus 16 vs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~--~~dl--~l--L~iNsl~kDL~~~-N~~iralALr~ls~I~~--~e 86 (645)
.....+..++.+.+++...++.+-.++..++.. ++.. .. -++..|.+-|.++ |+.+|..|+.+|+++.. ++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 456688899999999999999888888877543 3322 11 2467788888887 99999999999999865 22
Q ss_pred cHHH-----HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHCh
Q psy8267 87 IIPI-----VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 87 i~~~-----l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~ 156 (645)
.... .++.+.+++.++++.||..|+.++..+....|+.. .+.++.+..+|.+.++.|..+|+.++..++.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 2222 35667778888999999999999999987766543 2467888999999999999999999998883
Q ss_pred hh-----hhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccc
Q psy8267 157 ER-----IDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTK 231 (645)
Q Consensus 157 ~~-----~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~ 231 (645)
.. .....+.+..|++.|.+.++..+...+..|..++.. .|..
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---~~~~------------------------------ 291 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG---PQEA------------------------------ 291 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS---CHHH------------------------------
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---CHHH------------------------------
Confidence 32 112234466788888888888898899999888732 0100
Q ss_pred ccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh--HHHH-----HHHHHHHHHhC-CChhHHHHHHH
Q psy8267 232 NETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR--REVA-----IIAKALVRLLR-SSREVQTVVLT 303 (645)
Q Consensus 232 ~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~--~~~~-----~~~~~L~~lL~-s~~niryv~L~ 303 (645)
...+++ ..++..+..++++.+..|...|+.++.++... .... .+.+.|+.+|. .++.+|.-++.
T Consensus 292 -----~~~~~~---~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~ 363 (530)
T 1wa5_B 292 -----IQAVID---VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363 (530)
T ss_dssp -----HHHHHH---TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred -----HHHHHh---cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHH
Confidence 000000 01234445677888899999999999888642 1111 35678888886 56899999999
Q ss_pred HHHHHHhhcccchhh-----hhceEE-EcCCCChHHHHHHHHHHHHccCcC-----CHHH-----HHHHHHHhhccccHH
Q psy8267 304 TIASLAVKRRALFVP-----YLKSFY-VRSSDPTHVKTLKLELLTTLASET-----SIAS-----ILREFQTYISSVDKA 367 (645)
Q Consensus 304 ~l~~l~~~~p~~~~~-----~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~-----Nv~~-----Il~EL~~yl~~~d~~ 367 (645)
+|..++...++.... -+..+. ++.+.+..+|..++..|..++... +... ++..|...+.+.|++
T Consensus 364 aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 443 (530)
T 1wa5_B 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 443 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 999998644432221 111222 345567889999999999997642 3333 456777788888999
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy8267 368 FVAATVQAIGKCAANIA 384 (645)
Q Consensus 368 ~~~~~i~~I~~la~k~~ 384 (645)
++..++.+++.++...+
T Consensus 444 v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 444 IIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999988876543
No 24
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.25 E-value=8.8e-10 Score=125.95 Aligned_cols=393 Identities=15% Similarity=0.156 Sum_probs=250.1
Q ss_pred hHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC--ccccHHHHHHHHHhhcCCCChHHHHHHH
Q psy8267 34 VKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIR--VPMIIPIVMLAIKDSSLDMSPYVRKTAA 111 (645)
Q Consensus 34 ~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~--~~ei~~~l~~~I~~~l~d~~pyVRK~Aa 111 (645)
++|+.|+... .++-+....-+ .|-+.++|...|-++.-+++.+. .+|.+-.+...+++-+.|++|++|--|+
T Consensus 59 l~Kli~l~~~--G~d~s~~~~~v----vkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lAL 132 (621)
T 2vgl_A 59 VCKLLFIFLL--GHDIDFGHMEA----VNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLAL 132 (621)
T ss_dssp HHHHHHHHHH--SCCCCSCHHHH----HHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCchhHHHH----HHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7788888663 33334433333 34578999998877666666653 3567777889999999999999999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhh--cCCChhHHHHHHHHHHHHChhhhhhhH--HHHHHHHHHhcCCCchhHHHHHHH
Q psy8267 112 HAIPKLYSLDPEQKEELVLVIEKLL--QDKTTLVVGSAVMAFEEVCPERIDMIH--KSYRKLCNLLVDVDEWGQVFILNM 187 (645)
Q Consensus 112 lal~kl~~~~p~~~~~~~~~l~~lL--~D~~~~V~~sav~~l~ei~~~~~~li~--~~~~kL~~~L~~~~~W~Qv~iL~l 187 (645)
.++.++ ..|+..+.+.+.+.++| .|.+|.|.-.|+.++..++...++.+. ..+.++.+.|.+.++-.+...+.+
T Consensus 133 r~L~~i--~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~ 210 (621)
T 2vgl_A 133 HCIANV--GSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSL 210 (621)
T ss_dssp HHHHHH--CCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHhhcc--CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHH
Confidence 999998 57999999999999999 999999999998888776644444333 345677888889999888888888
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcC--C------
Q psy8267 188 LTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQS--R------ 259 (645)
Q Consensus 188 L~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s--~------ 259 (645)
|...+.. +|.. | .+-...+++.+..++.. .
T Consensus 211 l~~i~~~---~~~~-------------------~--------------------~~~~~~~~~~L~~ll~~~~~~~~~~~ 248 (621)
T 2vgl_A 211 ITTLAQK---NPEE-------------------F--------------------KTSVSLAVSRLSRIVTSASTDLQDYT 248 (621)
T ss_dssp HHHHHHH---CHHH-------------------H--------------------TTHHHHHHHHHHHHHHCCSSSCSTTE
T ss_pred HHHHHHh---ChHH-------------------H--------------------HHHHHHHHHHHHHHHhCCCCCccchh
Confidence 8777643 1210 0 00011122222222211 1
Q ss_pred -----ChHHHHHHHHHHHhcCCh--HH-HHHHHHHHHHHhC----CC-----------hhHHHHHHHHHHHHHhhcccch
Q psy8267 260 -----NAAVVMAVAQLFHHLAPR--RE-VAIIAKALVRLLR----SS-----------REVQTVVLTTIASLAVKRRALF 316 (645)
Q Consensus 260 -----n~aVv~ea~~~i~~l~~~--~~-~~~~~~~L~~lL~----s~-----------~niryv~L~~l~~l~~~~p~~~ 316 (645)
++-.....++++..+.+. .. .+.+.+.|-++++ +. +-+-|-+.+++..+.. .|++.
T Consensus 249 ~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~ 327 (621)
T 2vgl_A 249 YYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLL 327 (621)
T ss_dssp ETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHH
Confidence 343444455555555432 12 2334444444441 11 1344444444444431 23333
Q ss_pred hhhhceEE-EcCCCChHHHHHHHHHHHHccCcCC----HHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhccccHHHH
Q psy8267 317 VPYLKSFY-VRSSDPTHVKTLKLELLTTLASETS----IASILREFQTYIS-SVDKAFVAATVQAIGKCAANIAQVTDTC 390 (645)
Q Consensus 317 ~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~N----v~~Il~EL~~yl~-~~d~~~~~~~i~~I~~la~k~~~~~~~~ 390 (645)
..-...+. .+.+.+..+|..+|+.|..++.... +......+...+. +.|..+|..++..+..++.. ...+..
T Consensus 328 ~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~I 405 (621)
T 2vgl_A 328 VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQI 405 (621)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHH
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHH
Confidence 32222221 1345667999999999999997653 2223344445567 88999999998888777632 456778
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhccCC---hHHHHHHHHHHHhcccccCCCchHHHHH
Q psy8267 391 LTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSIT---VPTARAAILWLLGEYSHLVPALGPDVLR 467 (645)
Q Consensus 391 v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~i~---~~~ak~~~iwilGEy~~~i~~~~~diLr 467 (645)
++.+.+.+...+..+..+++..|..+..++|......+..|.+++..-. ..++...+.-++.+. ++.-...+.
T Consensus 406 v~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~----~~~~~~~~~ 481 (621)
T 2vgl_A 406 VAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR----DDVQGYAAK 481 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG----CSCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC----hhHHHHHHH
Confidence 8888888988888899999999999999998888888888888875321 233433444555544 333445566
Q ss_pred HHHHhhcCCchHHHHHHH
Q psy8267 468 KAAITFVNEEDIVKLQVL 485 (645)
Q Consensus 468 ~l~~~f~~e~~~vk~~iL 485 (645)
.+.+.+.+ ++.+..++
T Consensus 482 ~l~~~l~~--~~~~~~li 497 (621)
T 2vgl_A 482 TVFEALQA--PACHENLV 497 (621)
T ss_dssp HHHHHHTS--SSCCHHHH
T ss_pred HHHHHHcC--ccchHHHH
Confidence 66654433 33344444
No 25
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=99.24 E-value=7.9e-12 Score=127.41 Aligned_cols=105 Identities=10% Similarity=0.169 Sum_probs=88.8
Q ss_pred cCCCceEEEEEEeeCCCCCccceEeeeCCCCC-CCCcccccCCCCc-ccCCCCceEEEEeEE-ecCCCCCCccEEeeccc
Q psy8267 534 ASPRMISVTLRLTNHHGAPLSRVRIDSEGSSL-GHGMSMQPFPEIA-SIDPGLAVEVSLGLN-LNDSTQPLSPRLVWGVE 610 (645)
Q Consensus 534 ~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 610 (645)
|+++++++.|+|+||++.+|++|++.+.+... ++++.++ ..++| +++|++|+++.+.++ ..+|.++|.++|+|..
T Consensus 65 ~~~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~-~~~~~~tI~p~~q~qq~i~v~~~~pF~~~P~l~isf~~- 142 (273)
T 3hs8_A 65 FRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQ-TKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRY- 142 (273)
T ss_dssp EETTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEE-ECCCCSCBCTTCEEEEEEEEEECSCCCCCCEEEEEEEE-
T ss_pred EeCceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEE-ecCCCCeECCCCEEEEEEEEEEcccccCCCEEEEEEEE-
Confidence 68999999999999999999999998873111 2367776 33555 999999999999999 8999999999998853
Q ss_pred CCCCCccceEeeCCc--ccccccccCChHHHHhh
Q psy8267 611 GEDGLSAPLKLSAPV--GEWLRAVTMSTALFDAE 642 (645)
Q Consensus 611 ~~~~~~~~~~l~~pv--~~~~~~~~~~~~~f~~~ 642 (645)
+|...+++||+|| ++||.|+.|+.++|+++
T Consensus 143 --~g~~~~~~LkLPi~~~kf~~p~~~~~~~F~~r 174 (273)
T 3hs8_A 143 --GGTFQNVSVKLPITLNKFFQPTEMASQDFFQR 174 (273)
T ss_dssp --TTEEEEEEEECCCCGGGGEEECCCCHHHHHHH
T ss_pred --CCeEEEEEEecceehhheeccccCCHHHHHHH
Confidence 3445699999999 89999999999999986
No 26
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.22 E-value=9.7e-10 Score=128.96 Aligned_cols=358 Identities=13% Similarity=0.114 Sum_probs=239.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh-----HHHHHHH
Q psy8267 57 ISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ-----KEELVLV 131 (645)
Q Consensus 57 iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~-----~~~~~~~ 131 (645)
+.++.++|.++++.+|..|++.++.+...++..-.++.+.+++.+.++.||..|+.++.++....+.. .++.++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 46888999999999999999999877666777778889999999999999999999999998654322 1357777
Q ss_pred HHHhhcC-CChhHHHHHHHHHHHHChh--hhhhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCC
Q psy8267 132 IEKLLQD-KTTLVVGSAVMAFEEVCPE--RIDMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDS 206 (645)
Q Consensus 132 l~~lL~D-~~~~V~~sav~~l~ei~~~--~~~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s 206 (645)
|.++|.+ .++.+..+|+.++..++.+ +...+ .+.+..|++.|.+.++-.|...+..|...+.. .+..
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~---~~~~----- 268 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH---QEGA----- 268 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---STTH-----
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---Chhh-----
Confidence 7888864 5889999999999887632 22212 13467788999888888898899999888753 0100
Q ss_pred CCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcC--ChHH---H-
Q psy8267 207 SEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLA--PRRE---V- 280 (645)
Q Consensus 207 ~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~--~~~~---~- 280 (645)
...+.+ ...+..+..++++.+..|.-.|+.++..++ ..+. +
T Consensus 269 ------------------------------~~~v~~---~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~ 315 (780)
T 2z6g_A 269 ------------------------------KMAVRL---AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315 (780)
T ss_dssp ------------------------------HHHHHH---TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------HHHHHH---cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 000000 013344456777777766655555554433 2211 1
Q ss_pred -HHHHHHHHHHhC-CC-hhHHHHHHHHHHHHHhhccc----chhhh-hceEE-EcCCCChHHHHHHHHHHHHccCcC---
Q psy8267 281 -AIIAKALVRLLR-SS-REVQTVVLTTIASLAVKRRA----LFVPY-LKSFY-VRSSDPTHVKTLKLELLTTLASET--- 348 (645)
Q Consensus 281 -~~~~~~L~~lL~-s~-~niryv~L~~l~~l~~~~p~----~~~~~-~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~--- 348 (645)
...+..|+++|. .+ ...+..+...+..++. .+. +++.. +..+. ++.+.+..+++.++..|..|+...
T Consensus 316 ~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 394 (780)
T 2z6g_A 316 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394 (780)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh
Confidence 135678888886 33 3566667777777764 332 22111 11222 345566789999999999998643
Q ss_pred -CHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccH-----HHHHHHHHHhhccCC--hhhHHHHHHHHHHHhhcC
Q psy8267 349 -SIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVT-----DTCLTGLVSLLSYSD--EAVVAESVVVIKNLLQTQ 420 (645)
Q Consensus 349 -Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~-----~~~v~~ll~LL~~~~--~~v~~e~v~~i~~il~~~ 420 (645)
....++..|...+.+.|.+.+..++.+++.++...+... .-.+..|+++|...+ +.+...++..+.+|...+
T Consensus 395 ~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 395 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 457788999999999999999999999999986543222 235778888887643 368888888899887766
Q ss_pred Ccc---h-----HHHHHHHHHhhccCChHHHHHHHHHHHhcccc
Q psy8267 421 PEA---Y-----TDIIRHMVRLSDSITVPTARAAILWLLGEYSH 456 (645)
Q Consensus 421 p~~---~-----~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~ 456 (645)
++. + ..++..|.+.+.....+.++..++|.+|..+.
T Consensus 475 ~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 475 QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 652 1 12356677888766666788888999998874
No 27
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=99.19 E-value=2.4e-11 Score=122.50 Aligned_cols=104 Identities=12% Similarity=0.194 Sum_probs=88.1
Q ss_pred cCCCceEEEEEEeeCCCCCccceEeeeCCCCC--CCCcccccCCCCc-ccCCCCceEEEEeEE-ecCCCCCCccEEeecc
Q psy8267 534 ASPRMISVTLRLTNHHGAPLSRVRIDSEGSSL--GHGMSMQPFPEIA-SIDPGLAVEVSLGLN-LNDSTQPLSPRLVWGV 609 (645)
Q Consensus 534 ~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 609 (645)
|+++++++.|+|+||++.+|++|++.+.+ +. +.++.++..+ .+ +++|++|+++.+.++ ..++.++|.++++|..
T Consensus 39 ~~~~~gri~l~~gNKs~~~l~~f~~~i~~-~~~~~~~l~~~~~~-~~~~I~~~~q~qq~i~v~~~~~f~~~P~l~isf~~ 116 (247)
T 1kyf_A 39 FRQNLGRMFIFYGNKTSTQFLNFTPTLIC-ADDLQTNLNLQTKP-VDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRY 116 (247)
T ss_dssp EETTEEEEEEEEEECSSSCBEEEEEEEEC-CHHHHHHEEEEECC-CCSCBCTTCEEEEEEEEEECSCCCCCCEEEEEEEE
T ss_pred EeCCeEEEEEEEEcCCCCceeeEEEEEec-CcccCCCeeEecCC-CCceeCCCcEEEEEEEEEEccccCCCCEEEEEEEE
Confidence 68999999999999999999999998873 11 0146666333 45 999999999999999 9999999999999854
Q ss_pred cCCCCCccceEeeCCc--ccccccccCChHHHHhh
Q psy8267 610 EGEDGLSAPLKLSAPV--GEWLRAVTMSTALFDAE 642 (645)
Q Consensus 610 ~~~~~~~~~~~l~~pv--~~~~~~~~~~~~~f~~~ 642 (645)
+|...+++||+|+ ++||+|+.|+.++|+++
T Consensus 117 ---~g~~~~~~LkLPi~l~KF~~p~~~~~~~Ff~r 148 (247)
T 1kyf_A 117 ---GGTFQNVSVKLPITLNKFFQPTEMASQDFFQR 148 (247)
T ss_dssp ---TTEEEEEEEECCCCGGGGEEECCCCHHHHHHH
T ss_pred ---CCeeeEEEEecCcEEEEeecCCcCCHHHHHHH
Confidence 3455699999999 99999999999999986
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.14 E-value=1.2e-08 Score=113.59 Aligned_cols=326 Identities=12% Similarity=0.112 Sum_probs=230.6
Q ss_pred cchHHHHHHhccCCchhHHHHHHHHHHhcccC--chHHH----HHHHHHHHHcCCCC-HHHHHHHHHHHhCCCcc--ccH
Q psy8267 18 DLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQ--QDLAL----LSISTFQRALKDPN-QLIRASALRVLSSIRVP--MII 88 (645)
Q Consensus 18 ~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~--~dl~l----L~iNsl~kDL~~~N-~~iralALr~ls~I~~~--ei~ 88 (645)
.-.+.+++.+.+++...+.-+-.++..++... +.... =++..|.+-|.+++ +.+|..|+.+|+++... +..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34788999999999998888877777764432 22111 24667778888887 99999999999988653 222
Q ss_pred H-----HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH-----HHHHHHHHhh-cCCChhHHHHHHHHHHHHChh
Q psy8267 89 P-----IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE-----ELVLVIEKLL-QDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 89 ~-----~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~-----~~~~~l~~lL-~D~~~~V~~sav~~l~ei~~~ 157 (645)
. -.++.+.+++.++++.||..|+.++.++....|+..+ +.++.+..+| .+.++.|...|+.++..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 2 2567788899999999999999999999877666432 3567778888 678999999999999988853
Q ss_pred hh----hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccc
Q psy8267 158 RI----DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNE 233 (645)
Q Consensus 158 ~~----~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~ 233 (645)
.. ....+.+..|++.|.+.++..+...+..|...+.. +..
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~----~~~-------------------------------- 277 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG----TND-------------------------------- 277 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS----CHH--------------------------------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHH--------------------------------
Confidence 21 23345567788888888988899999988887621 100
Q ss_pred ccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh--HHHH-----HHHHHHHHHhC-C-ChhHHHHHHHH
Q psy8267 234 TSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR--REVA-----IIAKALVRLLR-S-SREVQTVVLTT 304 (645)
Q Consensus 234 ~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~--~~~~-----~~~~~L~~lL~-s-~~niryv~L~~ 304 (645)
....+++ ..++..+..++++.+..|...|+.++.++... .... .+...|+.+|. . ++.+|.-+..+
T Consensus 278 --~~~~~~~---~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 278 --KIQAVIE---AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp --HHHHHHH---TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred --HHHHHHH---cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 0000000 01244456778888999999999999888642 1111 25678888885 5 68999999999
Q ss_pred HHHHHhhcccchhh-----hhceEE-EcCCCChHHHHHHHHHHHHccCcC---CHHH-----HHHHHHHhhccccHHHHH
Q psy8267 305 IASLAVKRRALFVP-----YLKSFY-VRSSDPTHVKTLKLELLTTLASET---SIAS-----ILREFQTYISSVDKAFVA 370 (645)
Q Consensus 305 l~~l~~~~p~~~~~-----~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~---Nv~~-----Il~EL~~yl~~~d~~~~~ 370 (645)
|..|+...++.... -+..+. ++.+.+..+|..++..|..++... +... ++..|...+.+.|.+++.
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~ 432 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 432 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 99998654432211 111122 345557899999999999998763 3333 356677888889999999
Q ss_pred HHHHHHHHHHhhcc
Q psy8267 371 ATVQAIGKCAANIA 384 (645)
Q Consensus 371 ~~i~~I~~la~k~~ 384 (645)
.++.+++.+....+
T Consensus 433 ~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 433 VCLEGLENILKVGE 446 (528)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876543
No 29
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.12 E-value=9.9e-09 Score=104.56 Aligned_cols=161 Identities=17% Similarity=0.063 Sum_probs=124.0
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCc-cccHHHHHHHHH-
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRV-PMIIPIVMLAIK- 96 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~-~ei~~~l~~~I~- 96 (645)
.....++.+.+++..++.-.--.+..+.. ++ ++..+.+-|.|+++.+|..|+.+|+.++. .+..+.+++.+.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG--QD----AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNN 97 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--HH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC--ch----HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 35667888888999888887777776652 32 46678888999999999999999999984 455566666665
Q ss_pred hhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCC
Q psy8267 97 DSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDV 176 (645)
Q Consensus 97 ~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~ 176 (645)
.++.|+++.||..|+.++.++...+|...+..++.+..+|.|+++.|..+|+.++..+..... ...|...+.+.
T Consensus 98 ~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~------~~~L~~~l~d~ 171 (280)
T 1oyz_A 98 MALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKAT------IPLLINLLKDP 171 (280)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CC------HHHHHHHHTCS
T ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHH------HHHHHHHHcCC
Confidence 467899999999999999999877777667788899999999999999999999887753221 23456667777
Q ss_pred CchhHHHHHHHHHHH
Q psy8267 177 DEWGQVFILNMLTRY 191 (645)
Q Consensus 177 ~~W~Qv~iL~lL~~y 191 (645)
+++.+...+..|...
T Consensus 172 ~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 172 NGDVRNWAAFAININ 186 (280)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 777666666666554
No 30
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.11 E-value=1.4e-07 Score=109.79 Aligned_cols=413 Identities=12% Similarity=0.105 Sum_probs=278.0
Q ss_pred hccCCchhHHHHHHHHHHhcccCchHHH------HHHHHHHHHcCCCCHHHHHHHHHHHhCCCcc-----ccHHHHHHHH
Q psy8267 27 VVSKNIEVKKLVYVYLARYAEEQQDLAL------LSISTFQRALKDPNQLIRASALRVLSSIRVP-----MIIPIVMLAI 95 (645)
Q Consensus 27 i~s~~~~~KkL~Yl~l~~~~~~~~dl~l------L~iNsl~kDL~~~N~~iralALr~ls~I~~~-----ei~~~l~~~I 95 (645)
+...+.+.|-.+.-+++.++...+|..- =++..|.+-+.++++.++..|+.+++++... .+.+.-.+.+
T Consensus 256 ~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L 335 (810)
T 3now_A 256 LLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDIL 335 (810)
T ss_dssp HSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHH
T ss_pred hccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHH
Confidence 3467778887788888888887777532 1457778888999999999999888887553 2333334788
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhhc---Cch-------hHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHChh---hhh
Q psy8267 96 KDSSLDMSPYVRKTAAHAIPKLYSL---DPE-------QKEELVLVIEKLLQDK--TTLVVGSAVMAFEEVCPE---RID 160 (645)
Q Consensus 96 ~~~l~d~~pyVRK~Aalal~kl~~~---~p~-------~~~~~~~~l~~lL~D~--~~~V~~sav~~l~ei~~~---~~~ 160 (645)
.+++.+.++.+|..|+.++.|+-.. +|. .++.+.+.+.++|.++ |+.+...|+.++..++-+ +..
T Consensus 336 ~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~ 415 (810)
T 3now_A 336 KRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEK 415 (810)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 8889888999999999999999632 221 1467888999999887 899999999999998732 233
Q ss_pred hh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcc--cccccccc--
Q psy8267 161 MI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDET--TRDTKNET-- 234 (645)
Q Consensus 161 li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~--~~~~~~~~-- 234 (645)
+. .+.+..|+..|...++=.|-..+..|....... +++ + ..+.+.+ ...| .... ......+.
T Consensus 416 lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~--d~q--~-----~~~~l~~--la~~-s~~~v~~~~~ld~~~~ 483 (810)
T 3now_A 416 LIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAY--EKQ--E-----MLPEMIE--LAKF-AKQHIPEEHELDDVDF 483 (810)
T ss_dssp HHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCS--CCC--C-----CCCSCGG--GTTT-TCCSCCCSSCHHHHHH
T ss_pred HHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCc--hhh--h-----hhHHHHH--HHHH-hhccCccccccccHHH
Confidence 33 356788999998888888999999999887531 111 0 0001100 0011 1000 00000000
Q ss_pred --cccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHH------HHHHHHHHHhC-CChhHHHHHHHHH
Q psy8267 235 --SQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVA------IIAKALVRLLR-SSREVQTVVLTTI 305 (645)
Q Consensus 235 --~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~------~~~~~L~~lL~-s~~niryv~L~~l 305 (645)
.+.+.+++. -.+..+..++.+.++.+.-+|+.++.+++..+..+ .+.++|+.+|+ .++..|-.+..+|
T Consensus 484 v~~r~~~Vvea---GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL 560 (810)
T 3now_A 484 INKRITVLANE---GITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQAL 560 (810)
T ss_dssp HHHHHHHHHHT---THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHH
Confidence 000011110 12344466788889999999999999887543322 25689999995 6678999999999
Q ss_pred HHHHhh-cccc-hhh-----hhceEE-EcCCC-ChHHHHHHHHHHHHccCc--CCHHHHHH-----HHHHhhccccHHHH
Q psy8267 306 ASLAVK-RRAL-FVP-----YLKSFY-VRSSD-PTHVKTLKLELLTTLASE--TSIASILR-----EFQTYISSVDKAFV 369 (645)
Q Consensus 306 ~~l~~~-~p~~-~~~-----~~~~f~-~l~~d-~~~Ir~~kLdlL~~L~~~--~Nv~~Il~-----EL~~yl~~~d~~~~ 369 (645)
..|+.. +|+. |.. -+..+. ++.++ +...+..++..|.+|+.. ++.+.|++ .|..++.+.+..++
T Consensus 561 ~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq 640 (810)
T 3now_A 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT 640 (810)
T ss_dssp HHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHH
T ss_pred HHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHH
Confidence 998763 4432 211 111121 33444 445567899999999974 45655554 57788888888999
Q ss_pred HHHHHHHHHHHhhccccH------HHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHH------HHHHHHHhhcc
Q psy8267 370 AATVQAIGKCAANIAQVT------DTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTD------IIRHMVRLSDS 437 (645)
Q Consensus 370 ~~~i~~I~~la~k~~~~~------~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~------~i~~L~~~l~~ 437 (645)
+.+..+|+.++..- +.. ...+..|+.|+...+..+..++.-.+..+...+++.... .+..|++++.+
T Consensus 641 ~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s 719 (810)
T 3now_A 641 RAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719 (810)
T ss_dssp HHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC
Confidence 99999999987531 111 235778899999888778888888888887655554333 44567777765
Q ss_pred CChHHHHHHHHHHHhcccc
Q psy8267 438 ITVPTARAAILWLLGEYSH 456 (645)
Q Consensus 438 i~~~~ak~~~iwilGEy~~ 456 (645)
.+++++..++|.++....
T Consensus 720 -~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 720 -PSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp -SSHHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHh
Confidence 567777777999988764
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.09 E-value=1.2e-07 Score=105.66 Aligned_cols=323 Identities=17% Similarity=0.167 Sum_probs=219.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhC----CCcccc---HHH-HHHHHHhhcCC-CChHHHHHHHHHHHHHhhcCchhH-
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSS----IRVPMI---IPI-VMLAIKDSSLD-MSPYVRKTAAHAIPKLYSLDPEQK- 125 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~----I~~~ei---~~~-l~~~I~~~l~d-~~pyVRK~Aalal~kl~~~~p~~~- 125 (645)
++.-+.++++|.|+..+--|.+.+-+ =+.|.+ ++. +++.+.++|.+ .+|.|+..|+.|+..+-.-+++..
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 35566777888887766555443322 233322 222 46777888864 479999999999999988777753
Q ss_pred ----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh---hhh--HHHHHHHHHHhcCCCc-----hhHHHHHHHHHHH
Q psy8267 126 ----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI---DMI--HKSYRKLCNLLVDVDE-----WGQVFILNMLTRY 191 (645)
Q Consensus 126 ----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~---~li--~~~~~kL~~~L~~~~~-----W~Qv~iL~lL~~y 191 (645)
.+.++.+.++|.++++.|.-.|+.++..++.+.. +.+ ++.+..|+..|...+. ..+..+...|...
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 2468889999999999999999999999975422 222 1235567777765432 1233344455555
Q ss_pred HhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHH
Q psy8267 192 ARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLF 271 (645)
Q Consensus 192 ~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i 271 (645)
++.. +|.. . + ...+.++..+..++++.+.-|...|+.++
T Consensus 218 ~~~~--~~~~-------------------------------------~-~-~~~~~~lp~L~~LL~~~~~~v~~~A~~aL 256 (510)
T 3ul1_B 218 CRNK--NPAP-------------------------------------P-L-DAVEQILPTLVRLLHHNDPEVLADSCWAI 256 (510)
T ss_dssp HCCC--SSCC-------------------------------------C-H-HHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hhcc--cchh-------------------------------------H-H-HHHHhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5320 0100 0 0 01244566667788999999999999999
Q ss_pred HhcCCh--HHHH-----HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhccc----chhh-hhceEE-EcCCCChHHHHHH
Q psy8267 272 HHLAPR--REVA-----IIAKALVRLLR-SSREVQTVVLTTIASLAVKRRA----LFVP-YLKSFY-VRSSDPTHVKTLK 337 (645)
Q Consensus 272 ~~l~~~--~~~~-----~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~----~~~~-~~~~f~-~l~~d~~~Ir~~k 337 (645)
.++... .... .+...|+.+|. .++.++.-+++++..++...+. +++. -+..+. ++.+++..||..+
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A 336 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence 887642 2222 24578899996 6689999999999998764442 2221 222333 4667778999999
Q ss_pred HHHHHHccC--cCCHHH-----HHHHHHHhhccccHHHHHHHHHHHHHHHhhcccc------HHHHHHHHHHhhccCChh
Q psy8267 338 LELLTTLAS--ETSIAS-----ILREFQTYISSVDKAFVAATVQAIGKCAANIAQV------TDTCLTGLVSLLSYSDEA 404 (645)
Q Consensus 338 LdlL~~L~~--~~Nv~~-----Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~------~~~~v~~ll~LL~~~~~~ 404 (645)
...|..|+. +.+... ++.-|...+.+.|.+++++++.+|+.++..-... ..-++..|++||+..+..
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~ 416 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHH
Confidence 999999975 333333 4456778888899999999999999998753221 124578899999998888
Q ss_pred hHHHHHHHHHHHhhc
Q psy8267 405 VVAESVVVIKNLLQT 419 (645)
Q Consensus 405 v~~e~v~~i~~il~~ 419 (645)
+...+...+.+|++.
T Consensus 417 i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 417 IIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888864
No 32
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.08 E-value=1.4e-07 Score=104.40 Aligned_cols=426 Identities=13% Similarity=0.044 Sum_probs=266.6
Q ss_pred cchHHHHHHhccCCchhHHHHHHHHHHhcccCchH-HH----HHHHHHHHHcC-CCCHHHHHHHHHHHhCCCcc-ccHH-
Q psy8267 18 DLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDL-AL----LSISTFQRALK-DPNQLIRASALRVLSSIRVP-MIIP- 89 (645)
Q Consensus 18 ~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl-~l----L~iNsl~kDL~-~~N~~iralALr~ls~I~~~-ei~~- 89 (645)
...+..++++.+++..++.-+-.++..++..++.. .+ =.+..+.+-|. ++++.+|..|.++|.++... +..+
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 35778888999999998888888887777543321 11 14556666665 45889998998888886432 1111
Q ss_pred ----HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhh--
Q psy8267 90 ----IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER-- 158 (645)
Q Consensus 90 ----~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~-- 158 (645)
-.++.+.+++.++++-||+.|+.++.++...+++.. .+.++.+.++|.+.++.+...+..++..++..+
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 245677888999999999999999999988765532 457888999999999998888887887775321
Q ss_pred -hhhh--HHHHHHHHHHhcCCCch-hHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccc
Q psy8267 159 -IDMI--HKSYRKLCNLLVDVDEW-GQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNET 234 (645)
Q Consensus 159 -~~li--~~~~~kL~~~L~~~~~W-~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~ 234 (645)
...+ .+.+..|++.|.+.++. .+.....+|...+. .|...
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~-------------------------------- 220 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV----CSSNK-------------------------------- 220 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT----STTHH--------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc----CcccH--------------------------------
Confidence 1111 12345566767655543 33345555555542 12100
Q ss_pred cccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHH
Q psy8267 235 SQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR----REVAIIAKALVRLLR-SSREVQTVVLTTIASLA 309 (645)
Q Consensus 235 ~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~----~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~ 309 (645)
..+.+ ...+..+..++++.+..+...++.++.++... .....+.+.|+++|. .++++|..+...+..++
T Consensus 221 ---~~~~~---~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 221 ---PAIVE---AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp ---HHHHH---TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ---HHHHH---CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 00000 01344455677778888988888888776421 123567888999996 67899999999999997
Q ss_pred hhcccch----h----hhhceEEEcCCCChHHHHHHHHHHHHccCcC-C----HHH-----HHHHHHHhhcccc-HHHHH
Q psy8267 310 VKRRALF----V----PYLKSFYVRSSDPTHVKTLKLELLTTLASET-S----IAS-----ILREFQTYISSVD-KAFVA 370 (645)
Q Consensus 310 ~~~p~~~----~----~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~-N----v~~-----Il~EL~~yl~~~d-~~~~~ 370 (645)
...++.. + +.+-.++...+++..++..++..|..|+... . ... .+.-|...+.+.+ ..++.
T Consensus 295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~ 374 (529)
T 1jdh_A 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHH
Confidence 6544211 1 1111111112445789999999999998742 1 112 2455667777655 68999
Q ss_pred HHHHHHHHHHhhccccH----HHHHHHHHHhhccCChhhH----------------------HHHHHHHHHHhhcCCcch
Q psy8267 371 ATVQAIGKCAANIAQVT----DTCLTGLVSLLSYSDEAVV----------------------AESVVVIKNLLQTQPEAY 424 (645)
Q Consensus 371 ~~i~~I~~la~k~~~~~----~~~v~~ll~LL~~~~~~v~----------------------~e~v~~i~~il~~~p~~~ 424 (645)
+++.+++.++..-.... ...+..+++++...+..+. ..++..+..+.. +++.+
T Consensus 375 ~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~ 453 (529)
T 1jdh_A 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNR 453 (529)
T ss_dssp HHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHH
T ss_pred HHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHH
Confidence 99999999885322111 1345667777765332222 233444555543 34322
Q ss_pred H-----HHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchH-----HHHHHHHHhhcCCchHHHHHHHHhh
Q psy8267 425 T-----DIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGP-----DVLRKAAITFVNEEDIVKLQVLNLA 488 (645)
Q Consensus 425 ~-----~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~-----diLr~l~~~f~~e~~~vk~~iL~~~ 488 (645)
. .++..+.+++.+. .+.++..++|.+++.+..-+. .. ..++.+.+-..+++++|+.+...+.
T Consensus 454 ~~l~~~~~v~~l~~ll~~~-~~~v~~~a~~~l~~l~~~~~~-~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL 525 (529)
T 1jdh_A 454 IVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEA-AEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSHHH-HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHhccCCccHHHHHHcCC-chHHHHHHHHHHHHHhcCHHH-HHHHHHcCChHHHHHHhcCCCHHHHHHHHHHH
Confidence 2 2345677777653 467777779999988743111 11 2244455555678889998776654
No 33
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.06 E-value=6.5e-09 Score=101.29 Aligned_cols=184 Identities=19% Similarity=0.210 Sum_probs=139.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhh
Q psy8267 57 ISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLL 136 (645)
Q Consensus 57 iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL 136 (645)
+..+.+.|.|+|+.+|..|++.|+.++.++.++.+ .+++.|+++.||..|+.++.++. +|+. .+.+.++|
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L----~~~l~~~~~~vr~~a~~aL~~~~--~~~~----~~~L~~~l 90 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL----IKALKDEDAWVRRAAADALGQIG--DERA----VEPLIKAL 90 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHH----HHHTTCSCHHHHHHHHHHHHHHC--CGGG----HHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHH----HHHHcCCCHHHHHHHHHHHHhhC--CHHH----HHHHHHHH
Confidence 56677889999999999999999999987766554 56788999999999999999875 3443 45667888
Q ss_pred cCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCC
Q psy8267 137 QDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGE 216 (645)
Q Consensus 137 ~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~ 216 (645)
.|+++.|...|+.++..+..... +..|.+.|.+.+++.+...+..|..+. +|.
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~~~~------~~~L~~~l~d~~~~vr~~a~~aL~~~~-----~~~---------------- 143 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGDERA------VEPLIKALKDEDWFVRIAAAFALGEIG-----DER---------------- 143 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGGG------HHHHHHHTTCSSHHHHHHHHHHHHHHC-----CGG----------------
T ss_pred cCCCHHHHHHHHHHHHHhCcHHH------HHHHHHHHhCCCHHHHHHHHHHHHHcC-----CHH----------------
Confidence 99999999999999988864322 344677788899999999999888764 110
Q ss_pred CCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CCh
Q psy8267 217 DKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSR 295 (645)
Q Consensus 217 ~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~ 295 (645)
.+..+..++++.++.|..+|+..+..++.. .+...|..++. .++
T Consensus 144 -------------------------------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----~~~~~L~~~l~d~~~ 188 (211)
T 3ltm_A 144 -------------------------------AVEPLIKALKDEDGWVRQSAADALGEIGGE----RVRAAMEKLAETGTG 188 (211)
T ss_dssp -------------------------------GHHHHHHHTTCSSHHHHHHHHHHHHHHCSH----HHHHHHHHHHHHCCH
T ss_pred -------------------------------HHHHHHHHHcCCCHHHHHHHHHHHHHhCch----hHHHHHHHHHhCCCH
Confidence 122224567788899999999999888764 45566777774 778
Q ss_pred hHHHHHHHHHHHHHhhc
Q psy8267 296 EVQTVVLTTIASLAVKR 312 (645)
Q Consensus 296 niryv~L~~l~~l~~~~ 312 (645)
.+|..+...|..+....
T Consensus 189 ~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 189 FARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999988776543
No 34
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.04 E-value=9.6e-08 Score=111.14 Aligned_cols=396 Identities=15% Similarity=0.151 Sum_probs=268.1
Q ss_pred cchHHHHHHhccCCchhHHHHHHHHHHhcccCchH----HHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCc--------c
Q psy8267 18 DLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDL----ALLSISTFQRALKDPNQLIRASALRVLSSIRV--------P 85 (645)
Q Consensus 18 ~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl----~lL~iNsl~kDL~~~N~~iralALr~ls~I~~--------~ 85 (645)
.+.+.++++++|++..+++-++.++...+.. ++. .-.-+..+.+=+++.++.+|..|+-+|++++. +
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~ 368 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIR 368 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCC
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCcccc
Confidence 4557788999999999999999888886543 432 11234667777788999999999999988752 2
Q ss_pred cc----HHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHhhcCchhH------HHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy8267 86 MI----IPIVMLAIKDSSLDM--SPYVRKTAAHAIPKLYSLDPEQK------EELVLVIEKLLQDKTTLVVGSAVMAFEE 153 (645)
Q Consensus 86 ei----~~~l~~~I~~~l~d~--~pyVRK~Aalal~kl~~~~p~~~------~~~~~~l~~lL~D~~~~V~~sav~~l~e 153 (645)
.+ ++.+.+.+.+++.++ ++-||+.|+-++.-+- .+|+.. ..+++.|.++|+..++.+...|+.++..
T Consensus 369 ~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS-~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~N 447 (810)
T 3now_A 369 PFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT-LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVN 447 (810)
T ss_dssp SSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHT-TSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred chhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh-CCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 22 356788888999888 8999999999999875 455532 3678899999999999999999999998
Q ss_pred HChhh-----------------------------------hhhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhc
Q psy8267 154 VCPER-----------------------------------IDMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQF 196 (645)
Q Consensus 154 i~~~~-----------------------------------~~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~ 196 (645)
++... ...+ .+.+..|+..|...+|=.|......|...+..
T Consensus 448 Lt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-- 525 (810)
T 3now_A 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-- 525 (810)
T ss_dssp HTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS--
T ss_pred HcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--
Confidence 88421 0001 12355677777778888888888888877621
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcC-
Q psy8267 197 TDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLA- 275 (645)
Q Consensus 197 ~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~- 275 (645)
+.. ...+++ .-.+..+..++++.+..+...|+.++.++.
T Consensus 526 --~~~-----------------------------------r~~Vv~---~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~ 565 (810)
T 3now_A 526 --KEL-----------------------------------RGKVVQ---EGGVKALLRMALEGTEKGKRHATQALARIGI 565 (810)
T ss_dssp --HHH-----------------------------------HHHHHH---TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred --HHH-----------------------------------HHHHHH---CCCHHHHHHHHccCCHHHHHHHHHHHHHHhc
Confidence 100 000111 012334456677777777888888876542
Q ss_pred ---ChH-----HHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHhhccc----chh-hhhceEE-EcCCCChHHHHHHHH
Q psy8267 276 ---PRR-----EVAIIAKALVRLLRSSR--EVQTVVLTTIASLAVKRRA----LFV-PYLKSFY-VRSSDPTHVKTLKLE 339 (645)
Q Consensus 276 ---~~~-----~~~~~~~~L~~lL~s~~--niryv~L~~l~~l~~~~p~----~~~-~~~~~f~-~l~~d~~~Ir~~kLd 339 (645)
|.. ....++++|+.||.++. ..++-++.+|..|+...++ +++ .-+..+. ++.+++..|++.+++
T Consensus 566 ~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp HSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred CCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 211 12346799999997542 4567888998888764332 222 1222232 345666789999999
Q ss_pred HHHHccCcCCH-HH------HHHHHHHhhccccHHHHHHHHHHHHHHHhhccccH------HHHHHHHHHhhccCChhhH
Q psy8267 340 LLTTLASETSI-AS------ILREFQTYISSVDKAFVAATVQAIGKCAANIAQVT------DTCLTGLVSLLSYSDEAVV 406 (645)
Q Consensus 340 lL~~L~~~~Nv-~~------Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~------~~~v~~ll~LL~~~~~~v~ 406 (645)
+|.+|+..... .. .++-|..++.+.|.+.++++..+++.++...+... .-++..|++|+..++..+.
T Consensus 646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq 725 (810)
T 3now_A 646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQ 725 (810)
T ss_dssp HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHH
T ss_pred HHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHH
Confidence 99999874322 22 34556678888999999999999999987444322 2466789999999998999
Q ss_pred HHHHHHHHHHhhcCCcchHHH-----HHHHHHhhccC--ChHHHH---HHHHHHHhccccc
Q psy8267 407 AESVVVIKNLLQTQPEAYTDI-----IRHMVRLSDSI--TVPTAR---AAILWLLGEYSHL 457 (645)
Q Consensus 407 ~e~v~~i~~il~~~p~~~~~~-----i~~L~~~l~~i--~~~~ak---~~~iwilGEy~~~ 457 (645)
.++...+.++....++...++ +..|++++..- ..+++. ..++-.+-+||..
T Consensus 726 ~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 726 HRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 999999999998665544433 34455555432 233321 2235555677653
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.02 E-value=4.9e-08 Score=114.47 Aligned_cols=389 Identities=15% Similarity=0.133 Sum_probs=232.1
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccc-----c--HHHH
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPM-----I--IPIV 91 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~e-----i--~~~l 91 (645)
..+..++.+.+++.+.++- -+.+..+. ...+++.=.+..+.+-|.++++.+|..|+.+|+++...+ + .+..
T Consensus 116 ~i~~lv~~L~~~~~~~r~~-a~~~l~~~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHA-VVNLINYQ-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ----------CCSCHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred cHHHHHHHhcCccHHHHHH-HHHHHHhh-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 3466777778877666553 22222332 223455556778888888999999999999999885422 1 1245
Q ss_pred HHHHHhhcCC-CChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhh---hhhh
Q psy8267 92 MLAIKDSSLD-MSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER---IDMI 162 (645)
Q Consensus 92 ~~~I~~~l~d-~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~---~~li 162 (645)
++.+.+.+.+ .++.+|+.|+.++.++.. +++-. .+.++.|.++|.+.++.|...|+.++..++... ...+
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 5666666654 499999999999999764 33322 357888999999999999999999999998542 1222
Q ss_pred --HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccc
Q psy8267 163 --HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240 (645)
Q Consensus 163 --~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~ 240 (645)
.+.+..|++.|.+.++-.+...+..|..++.. ++.. + ..+
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~---~~e~----------------------------------~-~~i 314 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG---NQES----------------------------------K-LII 314 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT---CHHH----------------------------------H-HHH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---ChHH----------------------------------H-HHH
Confidence 23466788888875544455556666655521 0100 0 000
Q ss_pred cChhHHHHHHhhhhhhcCCChHHH-HHHHHHHHhcCCh----HHHH--HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhc
Q psy8267 241 LDPDHRLLLKNAKPLLQSRNAAVV-MAVAQLFHHLAPR----REVA--IIAKALVRLLR-SSREVQTVVLTTIASLAVKR 312 (645)
Q Consensus 241 ~d~d~~~ll~~~~~ll~s~n~aVv-~ea~~~i~~l~~~----~~~~--~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~ 312 (645)
.+.. .+..+..++++.+...+ ..++.++..++.. ..+- .+...|+.++. .++.++.-++..+..++...
T Consensus 315 ~~~~---~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 315 LASG---GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HTTT---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHcC---CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 0000 12222344555555443 3445555544321 1111 24577888885 56778888899998888654
Q ss_pred ccc--hhhhhceEE-EcCCCChHHHHHHHHHHHHccCcC--CHHH-----HHHHHHHhhcc-cc-HHHHHHHHHHHHHHH
Q psy8267 313 RAL--FVPYLKSFY-VRSSDPTHVKTLKLELLTTLASET--SIAS-----ILREFQTYISS-VD-KAFVAATVQAIGKCA 380 (645)
Q Consensus 313 p~~--~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~--Nv~~-----Il~EL~~yl~~-~d-~~~~~~~i~~I~~la 380 (645)
+.. ...-+..+. .+.+++..+|..++.+|..|+... +... .+..|...+.+ .+ .+.+..++.+++.++
T Consensus 392 ~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 392 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 431 122222222 356677899999999999998853 3332 34566666655 23 489999999999998
Q ss_pred hhccccH--------HHHHHHHHHhhccCCh-hhHHHHHHHHHHHhhcCCcchH-----HHHHHHHHhhccCChHHHHHH
Q psy8267 381 ANIAQVT--------DTCLTGLVSLLSYSDE-AVVAESVVVIKNLLQTQPEAYT-----DIIRHMVRLSDSITVPTARAA 446 (645)
Q Consensus 381 ~k~~~~~--------~~~v~~ll~LL~~~~~-~v~~e~v~~i~~il~~~p~~~~-----~~i~~L~~~l~~i~~~~ak~~ 446 (645)
...++.. ...+..|+++|....+ .+..++...+.+|... ++.+. .++..|.+++.+ .+++++..
T Consensus 472 ~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~ 549 (780)
T 2z6g_A 472 SRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR-AHQDTQRR 549 (780)
T ss_dssp SSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHH-HHHHHHHT
T ss_pred hcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHh-cchhHHHH
Confidence 6544321 2346788999988765 7888888899988853 33232 345666666653 22334433
Q ss_pred HHHHHhc
Q psy8267 447 ILWLLGE 453 (645)
Q Consensus 447 ~iwilGE 453 (645)
++|.+|.
T Consensus 550 aa~al~n 556 (780)
T 2z6g_A 550 TSMGGTQ 556 (780)
T ss_dssp TC-----
T ss_pred Hhhcccc
Confidence 4454443
No 36
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.01 E-value=1.9e-08 Score=97.17 Aligned_cols=182 Identities=19% Similarity=0.220 Sum_probs=136.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHh
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKL 135 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~l 135 (645)
....+.+.|.|+|+.+|..|++.|+.++.++.++.+ .+++.|+++.||..|+.++.++- +|+. ++.+.++
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L----~~~l~~~~~~vr~~a~~~L~~~~--~~~~----~~~L~~~ 84 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL----IKALKDEDAWVRRAAADALGQIG--DERA----VEPLIKA 84 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHH----HHHTTCSSHHHHHHHHHHHHHHC--CGGG----HHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHH----HHHHcCCCHHHHHHHHHHHHhhC--CHHH----HHHHHHH
Confidence 456778889999999999999999999887665554 56778999999999999998874 4443 4556678
Q ss_pred hcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCC
Q psy8267 136 LQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDG 215 (645)
Q Consensus 136 L~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~ 215 (645)
|.|+++.|...|+.++..+..... +..|.+.|.+.+++.+...+..|..+. +|.
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~~~~------~~~L~~~l~d~~~~vr~~a~~aL~~~~-----~~~--------------- 138 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGDERA------VEPLIKALKDEDWFVRIAAAFALGEIG-----DER--------------- 138 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGG------HHHHHHHTTCSSHHHHHHHHHHHHHHT-----CGG---------------
T ss_pred HcCCCHHHHHHHHHHHHHhCcHHH------HHHHHHHHcCCCHHHHHHHHHHHHHhC-----CHH---------------
Confidence 899999999999999988864322 334677788888888888888887765 110
Q ss_pred CCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CC
Q psy8267 216 EDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SS 294 (645)
Q Consensus 216 ~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~ 294 (645)
.+..+..++++.++.|..+|+..+..++.. .+...|..++. .+
T Consensus 139 --------------------------------~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~----~~~~~L~~~l~d~~ 182 (201)
T 3ltj_A 139 --------------------------------AVEPLIKALKDEDGWVRQSAADALGEIGGE----RVRAAMEKLAETGT 182 (201)
T ss_dssp --------------------------------GHHHHHHHTTCSSHHHHHHHHHHHHHHCSH----HHHHHHHHHHHHCC
T ss_pred --------------------------------HHHHHHHHHcCCCHHHHHHHHHHHHHhCch----hHHHHHHHHHhCCC
Confidence 112223556778888999999988888764 35566666674 67
Q ss_pred hhHHHHHHHHHHHHH
Q psy8267 295 REVQTVVLTTIASLA 309 (645)
Q Consensus 295 ~niryv~L~~l~~l~ 309 (645)
+.+|..+...|.++.
T Consensus 183 ~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 183 GFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 889988888877653
No 37
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.00 E-value=6.2e-07 Score=102.62 Aligned_cols=430 Identities=12% Similarity=0.047 Sum_probs=272.5
Q ss_pred Cccc-chHHHHHHhccCCchhHHHHHHHHHHhcccCchHHH-----HHHHHHHHHcCC-CCHHHHHHHHHHHhCCCcc-c
Q psy8267 15 DASD-LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLAL-----LSISTFQRALKD-PNQLIRASALRVLSSIRVP-M 86 (645)
Q Consensus 15 dvs~-lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~l-----L~iNsl~kDL~~-~N~~iralALr~ls~I~~~-e 86 (645)
++.. ..+..++++.+++..+|.-+-..+..++...+.... -++..+.+-|.+ +++.+|..|+++|.++... +
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 3444 478889999999999999998888888876543211 235666777765 4889998888888876432 1
Q ss_pred cHH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHCh
Q psy8267 87 IIP-----IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 87 i~~-----~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~ 156 (645)
... -.++.+.+++.++++.||+.|+.++.++...+++.. .+.++.+.++|.+.++.+...++.++..++.
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 111 245677888999999999999999999987765432 4678899999999999888888878877763
Q ss_pred h---hhhhh--HHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccc
Q psy8267 157 E---RIDMI--HKSYRKLCNLLVDVDE-WGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDT 230 (645)
Q Consensus 157 ~---~~~li--~~~~~kL~~~L~~~~~-W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~ 230 (645)
. ....+ .+.+..|++.|.+.+. -.+...+..|...+. .|...
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~----~~~~~---------------------------- 217 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV----CSSNK---------------------------- 217 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT----CTTHH----------------------------
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc----CcccH----------------------------
Confidence 2 11111 1235667777776543 223344555554441 12100
Q ss_pred cccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHhC-CChhHHHHHHHHH
Q psy8267 231 KNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR----REVAIIAKALVRLLR-SSREVQTVVLTTI 305 (645)
Q Consensus 231 ~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~----~~~~~~~~~L~~lL~-s~~niryv~L~~l 305 (645)
..+++ ...+..+..++++.+..+...|+.++.++... .....+...|+++|. .++++|..+...|
T Consensus 218 -------~~l~~---~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 218 -------PAIVE---AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp -------HHHHH---TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -------HHHHH---CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 00011 01344445667777888888888888776431 123567889999996 6789999999999
Q ss_pred HHHHhhccc----chhhh-hceEE-Ec-C-CCChHHHHHHHHHHHHccCcCC----HH------HHHHHHHHhhccc-cH
Q psy8267 306 ASLAVKRRA----LFVPY-LKSFY-VR-S-SDPTHVKTLKLELLTTLASETS----IA------SILREFQTYISSV-DK 366 (645)
Q Consensus 306 ~~l~~~~p~----~~~~~-~~~f~-~l-~-~d~~~Ir~~kLdlL~~L~~~~N----v~------~Il~EL~~yl~~~-d~ 366 (645)
..|+...++ +++.. +..+. .+ . ++...++..++..|..|+.... .+ ..+.-|...+.+. +.
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~ 367 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCH
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCch
Confidence 998875432 11110 11111 12 2 3336899999999999986422 11 2456677777765 47
Q ss_pred HHHHHHHHHHHHHHhhcccc----HHHHHHHHHHhhccCC----------------------hhhHHHHHHHHHHHhhcC
Q psy8267 367 AFVAATVQAIGKCAANIAQV----TDTCLTGLVSLLSYSD----------------------EAVVAESVVVIKNLLQTQ 420 (645)
Q Consensus 367 ~~~~~~i~~I~~la~k~~~~----~~~~v~~ll~LL~~~~----------------------~~v~~e~v~~i~~il~~~ 420 (645)
.++++++.+++.++..-... ....+..|+++|.... +.+...++..+..+.+ +
T Consensus 368 ~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~ 446 (644)
T 2z6h_A 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-D 446 (644)
T ss_dssp HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-C
Confidence 89999999999988532111 1235666777776532 2344445555565553 3
Q ss_pred CcchH-----HHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchH-----HHHHHHHHhhcCCchHHHHHHHHhhh
Q psy8267 421 PEAYT-----DIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGP-----DVLRKAAITFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 421 p~~~~-----~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~-----diLr~l~~~f~~e~~~vk~~iL~~~~ 489 (645)
++.+. .++..+++++.+ ..+.++..++|.+++.+.. ++... ..+..+.+-..+++++||.....+..
T Consensus 447 ~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~ 523 (644)
T 2z6h_A 447 VHNRIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 523 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHH
Confidence 33322 235667777765 3466777778998887643 11111 12445555566788899887777665
No 38
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.00 E-value=4.9e-08 Score=107.99 Aligned_cols=360 Identities=15% Similarity=0.122 Sum_probs=226.0
Q ss_pred chHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccc-----cH--HHHHHHHHhhcCC-CChHHHHHHHHHHHHHhhcC
Q psy8267 50 QDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPM-----II--PIVMLAIKDSSLD-MSPYVRKTAAHAIPKLYSLD 121 (645)
Q Consensus 50 ~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~e-----i~--~~l~~~I~~~l~d-~~pyVRK~Aalal~kl~~~~ 121 (645)
++...-++..+.+-|+++|+.+|..|+.+|+++...+ +. +..++.+.+.+.+ +++.+|+.|+.++.++.. +
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~ 90 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H 90 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-C
Confidence 3444446778888889999999999999999875421 11 2355666677754 589999999999999764 3
Q ss_pred chhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhh---hhhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy8267 122 PEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER---IDMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRY 191 (645)
Q Consensus 122 p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~---~~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y 191 (645)
++.. .+.++.+.++|.++++.|...|+.++..++.+. ...+ .+.+..|++.|.+.++-.+......|..+
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4432 246788899999999999999999999887532 1222 34567788888887655566666677666
Q ss_pred HhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCCh-HHHHHHHHH
Q psy8267 192 ARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNA-AVVMAVAQL 270 (645)
Q Consensus 192 ~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~-aVv~ea~~~ 270 (645)
+.. ++.. ...+.+. ..+..+..++++.++ .+...++.+
T Consensus 171 a~~---~~~~-----------------------------------~~~i~~~---~~i~~L~~ll~~~~~~~~~~~a~~~ 209 (529)
T 1jdh_A 171 AYG---NQES-----------------------------------KLIILAS---GGPQALVNIMRTYTYEKLLWTTSRV 209 (529)
T ss_dssp HTT---CHHH-----------------------------------HHHHHHT---THHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HhC---CHHH-----------------------------------HHHHHHC---CCHHHHHHHHHhCChHHHHHHHHHH
Confidence 521 0100 0000000 012222234444444 455556777
Q ss_pred HHhcCChH----HH--HHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhccc--chhhhhceEE-EcCCCChHHHHHHHHH
Q psy8267 271 FHHLAPRR----EV--AIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRA--LFVPYLKSFY-VRSSDPTHVKTLKLEL 340 (645)
Q Consensus 271 i~~l~~~~----~~--~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~--~~~~~~~~f~-~l~~d~~~Ir~~kLdl 340 (645)
+.+++... .+ ..+...|+.++. .+++++.-++..+..++...+. .....+..+. .+.+++..+|..+...
T Consensus 210 L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 289 (529)
T 1jdh_A 210 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 289 (529)
T ss_dssp HHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 76665321 12 135678888885 5678898899999888864432 1122222232 3467778999999999
Q ss_pred HHHccCcC--CHHHH-----HHHHHHhhcc--ccHHHHHHHHHHHHHHHhhccccH--------HHHHHHHHHhhccCCh
Q psy8267 341 LTTLASET--SIASI-----LREFQTYISS--VDKAFVAATVQAIGKCAANIAQVT--------DTCLTGLVSLLSYSDE 403 (645)
Q Consensus 341 L~~L~~~~--Nv~~I-----l~EL~~yl~~--~d~~~~~~~i~~I~~la~k~~~~~--------~~~v~~ll~LL~~~~~ 403 (645)
|..|+..+ |.+.+ ++.|...+.+ .+.+.+..++.+++.++...+... ...+..++++|....+
T Consensus 290 L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~ 369 (529)
T 1jdh_A 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 369 (529)
T ss_dssp HHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC
T ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccc
Confidence 99998853 44433 4566666654 237899999999999986544421 1246778899988764
Q ss_pred -hhHHHHHHHHHHHhhcCCcchH-----HHHHHHHHhhccCChHHHHHHHHHHHhc
Q psy8267 404 -AVVAESVVVIKNLLQTQPEAYT-----DIIRHMVRLSDSITVPTARAAILWLLGE 453 (645)
Q Consensus 404 -~v~~e~v~~i~~il~~~p~~~~-----~~i~~L~~~l~~i~~~~ak~~~iwilGE 453 (645)
.+..+++..+.++... ++.+. .++..+.+.+.+ .+++++..++|.++.
T Consensus 370 ~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 370 WPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH-HHHHHC---------
T ss_pred hHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHH-HhHHHHHHHhcccCc
Confidence 7888888888988864 43333 345667777764 456677777898886
No 39
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.00 E-value=7.1e-09 Score=109.71 Aligned_cols=286 Identities=14% Similarity=0.167 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHhcccCchH-HHHHHHHHHHHcCCCCHHHHH---HHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHH
Q psy8267 34 VKKLVYVYLARYAEEQQDL-ALLSISTFQRALKDPNQLIRA---SALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKT 109 (645)
Q Consensus 34 ~KkL~Yl~l~~~~~~~~dl-~lL~iNsl~kDL~~~N~~ira---lALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~ 109 (645)
+||+.|+...= +.-++. +.-.=-.+.|-++++|...|= +++..++.. .++++ .+...+.+-+.|++||+|-.
T Consensus 48 l~kll~l~~~G--~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~l 123 (355)
T 3tjz_B 48 LTKILYLINQG--EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGP 123 (355)
T ss_dssp HHHHHHHHHHT--CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHCC--CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHH
Confidence 66677765432 222221 111222446788999988774 667777777 45565 88999999999999999999
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy8267 110 AAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLT 189 (645)
Q Consensus 110 Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~ 189 (645)
|+-++.++ .+|+..+.+.+.++++|.|++|.|..+|+.+...+++..++++.+.+..+-+.
T Consensus 124 ALRtL~~I--~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~l----------------- 184 (355)
T 3tjz_B 124 AVRALCQI--TDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEA----------------- 184 (355)
T ss_dssp HHHHHHHH--CCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHH-----------------
T ss_pred HHHHHhcC--CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH-----------------
Confidence 99999999 68999999999999999999999999999998888877776543222223333
Q ss_pred HHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHH
Q psy8267 190 RYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQ 269 (645)
Q Consensus 190 ~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~ 269 (645)
+..+|+.|++.|+.
T Consensus 185 ------------------------------------------------------------------l~d~n~~V~~~Al~ 198 (355)
T 3tjz_B 185 ------------------------------------------------------------------ASSDNIMVQYHALG 198 (355)
T ss_dssp ------------------------------------------------------------------TTCSSHHHHHHHHH
T ss_pred ------------------------------------------------------------------hcCCCccHHHHHHH
Confidence 34455555555555
Q ss_pred HHHhcCChHHHHHHHHHHHHHhCC----ChhHHHHHHHHHHHHHhhc-ccchhhhhceEE-EcCCCChHHHHHHHHHHHH
Q psy8267 270 LFHHLAPRREVAIIAKALVRLLRS----SREVQTVVLTTIASLAVKR-RALFVPYLKSFY-VRSSDPTHVKTLKLELLTT 343 (645)
Q Consensus 270 ~i~~l~~~~~~~~~~~~L~~lL~s----~~niryv~L~~l~~l~~~~-p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~ 343 (645)
++.++.... +.+...|+.-+.. ++-.+...++.+..+.... |+.-.+.+..+. ++.+....|-..+...++.
T Consensus 199 lL~ei~~~d--~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~ 276 (355)
T 3tjz_B 199 LLYHVRKND--RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVN 276 (355)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC
T ss_pred HHHHHHhhc--hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 555443211 1111222222211 2323333334333333333 332233333333 4556666777777777777
Q ss_pred ccCcCCH--HHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHH
Q psy8267 344 LASETSI--ASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESV 410 (645)
Q Consensus 344 L~~~~Nv--~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v 410 (645)
+-+.... ...++-|..++.+.|.++|=-+++.|..++.++|.....|-..+..++++++..+..-++
T Consensus 277 l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 277 LPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHH
Confidence 6542111 123345556777888888888888888999999988888888888888887655544433
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.95 E-value=4.1e-07 Score=101.62 Aligned_cols=323 Identities=17% Similarity=0.173 Sum_probs=218.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhCC----Ccccc---HHH-HHHHHHhhcC-CCChHHHHHHHHHHHHHhhcCchhH-
Q psy8267 56 SISTFQRALKDPNQLIRASALRVLSSI----RVPMI---IPI-VMLAIKDSSL-DMSPYVRKTAAHAIPKLYSLDPEQK- 125 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralALr~ls~I----~~~ei---~~~-l~~~I~~~l~-d~~pyVRK~Aalal~kl~~~~p~~~- 125 (645)
.+..+.+.+.++|+..+-.|++.+-++ +.+.+ ++. +++.+.+++. +.+|.++..|+.|+..+-..+++..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356677888888888777666655432 22222 111 3566777775 5579999999999999988777753
Q ss_pred ----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh---hhh--HHHHHHHHHHhcCCCc-----hhHHHHHHHHHHH
Q psy8267 126 ----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI---DMI--HKSYRKLCNLLVDVDE-----WGQVFILNMLTRY 191 (645)
Q Consensus 126 ----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~---~li--~~~~~kL~~~L~~~~~-----W~Qv~iL~lL~~y 191 (645)
.+.++.+..+|.++++.|.-.|+.++..++.+.. +.+ ++.+..|+..|...+. ..+..+...|...
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999975432 222 1235567777765432 2233444555555
Q ss_pred HhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHH
Q psy8267 192 ARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLF 271 (645)
Q Consensus 192 ~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i 271 (645)
++.. +|.. . + .....++..+..++++.++.|...|+.++
T Consensus 237 ~~~~--~~~~-------------------------------------~-~-~~~~~~lp~L~~LL~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 237 CRNK--NPAP-------------------------------------P-L-DAVEQILPTLVRLLHHNDPEVLADSCWAI 275 (529)
T ss_dssp HCCC--TTCC-------------------------------------C-H-HHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred Hhcc--cchh-------------------------------------h-H-HHHhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 5320 0100 0 0 01234566667788999999999999988
Q ss_pred HhcCC--hHHHH-----HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhccc----chhh-hhceEE-EcCCCChHHHHHH
Q psy8267 272 HHLAP--RREVA-----IIAKALVRLLR-SSREVQTVVLTTIASLAVKRRA----LFVP-YLKSFY-VRSSDPTHVKTLK 337 (645)
Q Consensus 272 ~~l~~--~~~~~-----~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~----~~~~-~~~~f~-~l~~d~~~Ir~~k 337 (645)
.++.. ..... .+...|+.+|. .++.++.-++.++..++...+. ++.. -+..+. ++.+.+..||..+
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 77643 22222 24578899996 6789999999999998764442 1211 122222 4567778999999
Q ss_pred HHHHHHccC--cCCHHH-----HHHHHHHhhccccHHHHHHHHHHHHHHHhhcccc------HHHHHHHHHHhhccCChh
Q psy8267 338 LELLTTLAS--ETSIAS-----ILREFQTYISSVDKAFVAATVQAIGKCAANIAQV------TDTCLTGLVSLLSYSDEA 404 (645)
Q Consensus 338 LdlL~~L~~--~~Nv~~-----Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~------~~~~v~~ll~LL~~~~~~ 404 (645)
...|..|+. +..... ++.-|...+.+.+.+++.+++.+|+.++..-... ..-++..|++||+..+..
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~ 435 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 435 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHH
Confidence 999999875 333333 3456777888999999999999999988643221 123577899999998888
Q ss_pred hHHHHHHHHHHHhhc
Q psy8267 405 VVAESVVVIKNLLQT 419 (645)
Q Consensus 405 v~~e~v~~i~~il~~ 419 (645)
+..-++..+.+|++.
T Consensus 436 i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 436 IIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888788888888763
No 41
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.88 E-value=1.7e-06 Score=96.33 Aligned_cols=323 Identities=13% Similarity=0.124 Sum_probs=219.5
Q ss_pred ccchHHHHHHhccCCchhHHHHHHHHHHhc--ccCchH--HHH--HHHHHHHHcC-CCCHHHHHHHHHHHhCCC--cccc
Q psy8267 17 SDLFPAVVKNVVSKNIEVKKLVYVYLARYA--EEQQDL--ALL--SISTFQRALK-DPNQLIRASALRVLSSIR--VPMI 87 (645)
Q Consensus 17 s~lf~~vvkli~s~~~~~KkL~Yl~l~~~~--~~~~dl--~lL--~iNsl~kDL~-~~N~~iralALr~ls~I~--~~ei 87 (645)
.+-..++|+.+.|+|.+.+.-+--.+..+. +.+|-. .+- ++..|.+-|+ +.++.++..|..+|++|. .++-
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 345899999999999998877776666543 234432 221 4667888886 566899988999998873 3433
Q ss_pred HHH-----HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH-----HHHHHHHHhhcCCCh-----hHHHHHHHHHH
Q psy8267 88 IPI-----VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE-----ELVLVIEKLLQDKTT-----LVVGSAVMAFE 152 (645)
Q Consensus 88 ~~~-----l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~-----~~~~~l~~lL~D~~~-----~V~~sav~~l~ 152 (645)
... .++.+.+++.++++.||..|+.|+..+-.-+|+..+ +.++.+..+|.+.+. .+..+++.++.
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 332 467788999999999999999999999877776532 356778888887553 34556677777
Q ss_pred HHChhh-----hhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccc
Q psy8267 153 EVCPER-----IDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETT 227 (645)
Q Consensus 153 ei~~~~-----~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~ 227 (645)
.++... .....+.+..|.+.|.+.++..+......|...+.. +..
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~----~~~-------------------------- 265 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG----PNE-------------------------- 265 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS----CHH--------------------------
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc----hhh--------------------------
Confidence 776321 123345567788888888998888888888877621 100
Q ss_pred ccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh-HHH-HH-----HHHHHHHHhC-CChhHHH
Q psy8267 228 RDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR-REV-AI-----IAKALVRLLR-SSREVQT 299 (645)
Q Consensus 228 ~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~-~~~-~~-----~~~~L~~lL~-s~~niry 299 (645)
....+.+ ..++..+..++++.+..|...|++++.++... ... .. +...|..+|+ .++++|.
T Consensus 266 --------~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~ 334 (510)
T 3ul1_B 266 --------RIEMVVK---KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 334 (510)
T ss_dssp --------HHHHHHT---TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHH
T ss_pred --------hHHHHHh---cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHH
Confidence 0000000 01233445678899999999999999887542 121 11 3356677775 5679999
Q ss_pred HHHHHHHHHHhhcccch----hh-hhceEE-EcCCCChHHHHHHHHHHHHccCcCCHHH---H-----HHHHHHhhcccc
Q psy8267 300 VVLTTIASLAVKRRALF----VP-YLKSFY-VRSSDPTHVKTLKLELLTTLASETSIAS---I-----LREFQTYISSVD 365 (645)
Q Consensus 300 v~L~~l~~l~~~~p~~~----~~-~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~---I-----l~EL~~yl~~~d 365 (645)
-+..+|..|+...++.. +. -+..+. ++.+.+..+|+.+...|.+++...+.+. + ++-|...+.+.|
T Consensus 335 ~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 99999999986554321 11 111122 4566778999999999999987655543 2 456778888899
Q ss_pred HHHHHHHHHHHHHHH
Q psy8267 366 KAFVAATVQAIGKCA 380 (645)
Q Consensus 366 ~~~~~~~i~~I~~la 380 (645)
.+++..++.+|..+.
T Consensus 415 ~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 415 TKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988887777654
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.87 E-value=7.8e-07 Score=101.77 Aligned_cols=325 Identities=13% Similarity=0.113 Sum_probs=215.4
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcC-CChhHHHHHHHHHHHHChhh--hhh
Q psy8267 90 IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQD-KTTLVVGSAVMAFEEVCPER--IDM 161 (645)
Q Consensus 90 ~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D-~~~~V~~sav~~l~ei~~~~--~~l 161 (645)
-.++.+.+++.+.++.||..|+.++.++....+... ++.++.+.++|.+ .++.+..+|+.++..++.+. ...
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 345566677778888888888888888886554321 3566777777765 47888888888888776321 111
Q ss_pred h--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccccccc
Q psy8267 162 I--HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVST 239 (645)
Q Consensus 162 i--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~ 239 (645)
+ .+.+..|++.|.+.++-.|...+..|...+.. ++.. . ..
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~---~~~~-~----------------------------------~~ 135 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH---QEGA-K----------------------------------MA 135 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---STTH-H----------------------------------HH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhC---cchh-H----------------------------------HH
Confidence 1 12456678888888888888888888887743 0100 0 00
Q ss_pred ccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCC--hHH---H--HHHHHHHHHHhCCC--hhHHHHHHHHHHHHHh
Q psy8267 240 ELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP--RRE---V--AIIAKALVRLLRSS--REVQTVVLTTIASLAV 310 (645)
Q Consensus 240 ~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~--~~~---~--~~~~~~L~~lL~s~--~niryv~L~~l~~l~~ 310 (645)
+.+ ...+..+..++++.+..+...++.++..++. .+. + ...+..|+++|++. ..+++.++..+..++.
T Consensus 136 v~~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 136 VRL---AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHH---TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHH---CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 000 0134444567777777666666666665542 211 1 13567889999633 4677888888777764
Q ss_pred hccc----chhh-hhceEE-EcCCCChHHHHHHHHHHHHccCcC----CHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy8267 311 KRRA----LFVP-YLKSFY-VRSSDPTHVKTLKLELLTTLASET----SIASILREFQTYISSVDKAFVAATVQAIGKCA 380 (645)
Q Consensus 311 ~~p~----~~~~-~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~----Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la 380 (645)
.+. +++. -+..+. ++.+++..+++.++.+|..|+... ....++..|...+.+.|.+.+..++.+++.++
T Consensus 213 -~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 213 -CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp -CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred -CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 332 1111 111121 334557889999999999998742 45678888899999999999999999999998
Q ss_pred hhccccHH-----HHHHHHHHhhccCC--hhhHHHHHHHHHHHhhcCCc---chH-----HHHHHHHHhhccCChHHHHH
Q psy8267 381 ANIAQVTD-----TCLTGLVSLLSYSD--EAVVAESVVVIKNLLQTQPE---AYT-----DIIRHMVRLSDSITVPTARA 445 (645)
Q Consensus 381 ~k~~~~~~-----~~v~~ll~LL~~~~--~~v~~e~v~~i~~il~~~p~---~~~-----~~i~~L~~~l~~i~~~~ak~ 445 (645)
...+.... -.+..|++++...+ +.+...++..+.+|...+++ .+. ..+..+.+++.+...+.++.
T Consensus 292 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~ 371 (644)
T 2z6h_A 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 371 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHH
Confidence 75433222 25778888887644 57888888899999876664 122 35677888887655567777
Q ss_pred HHHHHHhcccc
Q psy8267 446 AILWLLGEYSH 456 (645)
Q Consensus 446 ~~iwilGEy~~ 456 (645)
.++|.+|..+.
T Consensus 372 ~a~~~L~nLa~ 382 (644)
T 2z6h_A 372 ATVGLIRNLAL 382 (644)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcc
Confidence 77999998764
No 43
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.85 E-value=5.5e-07 Score=97.30 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=112.8
Q ss_pred chHHHHHHhccC--CchhHHHHHHHHHHhccc----------------CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Q psy8267 19 LFPAVVKNVVSK--NIEVKKLVYVYLARYAEE----------------QQDLALLSISTFQRALKDPNQLIRASALRVLS 80 (645)
Q Consensus 19 lf~~vvkli~s~--~~~~KkL~Yl~l~~~~~~----------------~~dl~lL~iNsl~kDL~~~N~~iralALr~ls 80 (645)
++......+.++ +..+|+++-+++..+... .++.--.+-+.+.+-|.++++.+ ..+-.+++
T Consensus 36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~ 114 (462)
T 1ibr_B 36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVA 114 (462)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHH
Confidence 344445555543 688999999999887533 22222234455666677777666 54555554
Q ss_pred CCC---cc-ccHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHhhcC-chh----HHHHHHHHHHhhcCC--ChhHHHHH
Q psy8267 81 SIR---VP-MIIPIVMLAIKDSSLDM--SPYVRKTAAHAIPKLYSLD-PEQ----KEELVLVIEKLLQDK--TTLVVGSA 147 (645)
Q Consensus 81 ~I~---~~-ei~~~l~~~I~~~l~d~--~pyVRK~Aalal~kl~~~~-p~~----~~~~~~~l~~lL~D~--~~~V~~sa 147 (645)
.|. .+ .-.+.+++.+.+++.++ ++.+|..|+.++.++.+.. |+. .+.+.+.+..+|.|. ++.|...|
T Consensus 115 ~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a 194 (462)
T 1ibr_B 115 GIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAA 194 (462)
T ss_dssp HHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 442 12 13355666677778888 9999999999999998744 443 467888889999998 78898889
Q ss_pred HHHHHHHCh---hhhh--hhHH-HHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q psy8267 148 VMAFEEVCP---ERID--MIHK-SYRKLCNLLVDVDEWGQVFILNMLTRYART 194 (645)
Q Consensus 148 v~~l~ei~~---~~~~--li~~-~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~ 194 (645)
+.++..+.+ +..+ .... ....+...+.+.++-.+..+++.|..+...
T Consensus 195 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 195 TNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp HHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 888887543 1111 1111 133344455555665566788888888754
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.84 E-value=1.6e-07 Score=91.22 Aligned_cols=188 Identities=19% Similarity=0.222 Sum_probs=145.1
Q ss_pred CcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHH
Q psy8267 15 DASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLA 94 (645)
Q Consensus 15 dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~ 94 (645)
.-....+..++.+.+++..+|..+--.+..+.. ++ ++..+.+-|.|+++.+|..|+++|+.++.++.++.+
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L--- 86 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPL--- 86 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHH---
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--cc----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHH---
Confidence 335678888999999999999888888877754 22 345667778999999999999999999988776654
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhc
Q psy8267 95 IKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLV 174 (645)
Q Consensus 95 I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~ 174 (645)
.+++.|++|.||..|+.++.++- +++. ++.+.++|+|+++.|...|+.++..+..... ...|...+.
T Consensus 87 -~~~l~~~~~~vr~~a~~aL~~~~--~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~L~~~l~ 153 (211)
T 3ltm_A 87 -IKALKDEDGWVRQSAAVALGQIG--DERA----VEPLIKALKDEDWFVRIAAAFALGEIGDERA------VEPLIKALK 153 (211)
T ss_dssp -HHHTTCSSHHHHHHHHHHHHHHC--CGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG------HHHHHHHTT
T ss_pred -HHHHcCCCHHHHHHHHHHHHHhC--cHHH----HHHHHHHHhCCCHHHHHHHHHHHHHcCCHHH------HHHHHHHHc
Confidence 66789999999999999999884 3443 4566788999999999999999999865432 344777888
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhh
Q psy8267 175 DVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKP 254 (645)
Q Consensus 175 ~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ 254 (645)
+.+++.+...++.|..+.. | ..+..+..
T Consensus 154 d~~~~vr~~a~~aL~~~~~-----~-----------------------------------------------~~~~~L~~ 181 (211)
T 3ltm_A 154 DEDGWVRQSAADALGEIGG-----E-----------------------------------------------RVRAAMEK 181 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCS-----H-----------------------------------------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc-----h-----------------------------------------------hHHHHHHH
Confidence 9999999999999887741 1 12333345
Q ss_pred hhcCCChHHHHHHHHHHHhcCC
Q psy8267 255 LLQSRNAAVVMAVAQLFHHLAP 276 (645)
Q Consensus 255 ll~s~n~aVv~ea~~~i~~l~~ 276 (645)
++++.++.|..+|+..+..+..
T Consensus 182 ~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 182 LAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHCCHHHHHHHHHHHHC---
T ss_pred HHhCCCHHHHHHHHHHHHhcCC
Confidence 6677888999999888876654
No 45
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.84 E-value=1.6e-07 Score=90.61 Aligned_cols=154 Identities=23% Similarity=0.283 Sum_probs=125.3
Q ss_pred ccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHH
Q psy8267 17 SDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIK 96 (645)
Q Consensus 17 s~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~ 96 (645)
...++.+++++.+++..+|...--++..+... + ++..+.+-|.|+|+.+|..|+++|+.++.++.++.+ .
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L----~ 82 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--R----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPL----I 82 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--G----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHH----H
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--h----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHH----H
Confidence 34678899999999999999988888877642 2 345667778999999999999999999988766554 5
Q ss_pred hhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCC
Q psy8267 97 DSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDV 176 (645)
Q Consensus 97 ~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~ 176 (645)
+++.|++|.||..|+.++.++. +|+. .+.+.++|.|+++.|...|+.++..+..... ...|...+.+.
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~--~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~L~~~l~d~ 150 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIG--DERA----VEPLIKALKDEDWFVRIAAAFALGEIGDERA------VEPLIKALKDE 150 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHC--CGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHTCGGG------HHHHHHHTTCS
T ss_pred HHHcCCCHHHHHHHHHHHHHhC--cHHH----HHHHHHHHcCCCHHHHHHHHHHHHHhCCHHH------HHHHHHHHcCC
Confidence 6789999999999999999874 4443 4556788899999999999999998864322 34477888899
Q ss_pred CchhHHHHHHHHHHHH
Q psy8267 177 DEWGQVFILNMLTRYA 192 (645)
Q Consensus 177 ~~W~Qv~iL~lL~~y~ 192 (645)
+++.+...+..|..+.
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999888774
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.82 E-value=6.9e-06 Score=91.67 Aligned_cols=324 Identities=13% Similarity=0.120 Sum_probs=218.4
Q ss_pred cccchHHHHHHhccCCchhHHHHHHHHHHhc--ccCchH--HH--HHHHHHHHHcC-CCCHHHHHHHHHHHhCCCc--cc
Q psy8267 16 ASDLFPAVVKNVVSKNIEVKKLVYVYLARYA--EEQQDL--AL--LSISTFQRALK-DPNQLIRASALRVLSSIRV--PM 86 (645)
Q Consensus 16 vs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~--~~~~dl--~l--L~iNsl~kDL~-~~N~~iralALr~ls~I~~--~e 86 (645)
+....+++++.+.|+|.+.+.-+--++..+. +.+|-. .+ =++..|.+-|. +.++.++..|..+|++|.. ++
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 3446789999999999988776666665543 233322 11 14566777775 5679999888888888743 22
Q ss_pred cHHH-----HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH-----HHHHHHHHhhcCCCh-----hHHHHHHHHH
Q psy8267 87 IIPI-----VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE-----ELVLVIEKLLQDKTT-----LVVGSAVMAF 151 (645)
Q Consensus 87 i~~~-----l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~-----~~~~~l~~lL~D~~~-----~V~~sav~~l 151 (645)
-... .++.+.+++.++++.||..|+.|+..+-..+|+... +.++.+..+|.+.+. .+..+++.++
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 2222 357778899999999999999999999887777543 346778888876553 3445666777
Q ss_pred HHHChhh-----hhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcc
Q psy8267 152 EEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDET 226 (645)
Q Consensus 152 ~ei~~~~-----~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~ 226 (645)
..++... .....+.+..|.+.|...++..+......|...... +..
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~----~~~------------------------- 284 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG----PNE------------------------- 284 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS----CHH-------------------------
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh----hhh-------------------------
Confidence 7776321 223345567788888888998888888888777631 100
Q ss_pred cccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh-HHHH------HHHHHHHHHhC-CChhHH
Q psy8267 227 TRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR-REVA------IIAKALVRLLR-SSREVQ 298 (645)
Q Consensus 227 ~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~-~~~~------~~~~~L~~lL~-s~~nir 298 (645)
....+.+. .++..+..++.+.+..|...|++++.++... .... .+...|+.+|+ .++++|
T Consensus 285 ---------~~~~v~~~---g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~ 352 (529)
T 3tpo_A 285 ---------RIEMVVKK---GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 352 (529)
T ss_dssp ---------HHHHHHTT---TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHH
T ss_pred ---------hHHHHHhc---cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHH
Confidence 00000000 1233445678899999999999999887542 2211 24467888996 668999
Q ss_pred HHHHHHHHHHHhhcccch----hh-hhceEE-EcCCCChHHHHHHHHHHHHccCcCCHHH---H-----HHHHHHhhccc
Q psy8267 299 TVVLTTIASLAVKRRALF----VP-YLKSFY-VRSSDPTHVKTLKLELLTTLASETSIAS---I-----LREFQTYISSV 364 (645)
Q Consensus 299 yv~L~~l~~l~~~~p~~~----~~-~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~---I-----l~EL~~yl~~~ 364 (645)
.-+..+|..|+...++.. +. -+..+. ++.+.+..+|..+...|.+++...+.+. + +.-|...+.+.
T Consensus 353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~ 432 (529)
T 3tpo_A 353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 432 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC
Confidence 999999999987555321 11 111122 4567778899999999999986555443 3 45677888889
Q ss_pred cHHHHHHHHHHHHHHH
Q psy8267 365 DKAFVAATVQAIGKCA 380 (645)
Q Consensus 365 d~~~~~~~i~~I~~la 380 (645)
|.+++..++.+|..+.
T Consensus 433 d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 433 DTKIIQVILDAISNIF 448 (529)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9998888777776554
No 47
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=98.80 E-value=1.9e-08 Score=101.59 Aligned_cols=123 Identities=17% Similarity=0.165 Sum_probs=104.5
Q ss_pred HHHHHHhCCCCcceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCc-ccCCCCceE
Q psy8267 509 EVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIA-SIDPGLAVE 587 (645)
Q Consensus 509 ~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 587 (645)
.+|....|+ | |.+.+.|.| ++.+..++++|+|+++.+|++|.+..+ +++-|+....+..+| .|+||++.+
T Consensus 34 ~~l~~~~g~-G-LeI~g~f~r-----~~g~i~l~l~~~N~s~~~is~faIQfN--kNsFGL~p~~~~~~~~~L~pgqs~~ 104 (258)
T 2g30_A 34 VWLPAVKAK-G-LEISGTFTH-----RQGHIYMEMNFTNKALQHMTDFAIQFN--KNSFGVIPSTPLAIHTPLMPNQSID 104 (258)
T ss_dssp EEECGGGTT-T-EEEEEEEEE-----ETTEEEEEEEEEECSSSCBCCCEEEEC--CBTTCCEESSCCCCCSCBCTTCEEE
T ss_pred hcccccCCC-c-EEEEEEEEE-----eCCEEEEEEEEecCCccceeeeEEEEc--ccccCcccCccccCCCccCCCCcEE
Confidence 444555566 7 999999999 688899999999999999999999999 899999999888886 899999999
Q ss_pred EEEeEEecCCCCCC----ccEEeecccCCCCCccceEeeCCccccccc-ccCChHHHHhhh
Q psy8267 588 VSLGLNLNDSTQPL----SPRLVWGVEGEDGLSAPLKLSAPVGEWLRA-VTMSTALFDAEK 643 (645)
Q Consensus 588 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~pv~~~~~~-~~~~~~~f~~~~ 643 (645)
+.+++.+++..+.. .+++- +.+.. +-|.++.++|++.++.| ..|+.++|.+..
T Consensus 105 v~lpl~~~~~~~~~~p~~~LQVA--IKtn~-~vfYF~~~ipl~~l~~e~g~m~~~~F~~~W 162 (258)
T 2g30_A 105 VSLPLNTLGPVMKMEPLNNLQVA--VKNNI-DVFYFSCLIPLNVLFVEDGKMERQVFLATW 162 (258)
T ss_dssp EEEEEESCSCBCCCSSTTEEEEE--EECSS-CEEEEEEECCGGGGBCSCCCCCHHHHHHHH
T ss_pred EEEeeecCCcccCCCCCchheee--eecCC-ceEEEEeecCHHHhcCCcCccCHHHHHHHH
Confidence 99999987776632 67752 22666 58899999999999888 999999998764
No 48
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.74 E-value=1.6e-06 Score=85.66 Aligned_cols=219 Identities=19% Similarity=0.127 Sum_probs=159.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCCCccc--cHH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH---
Q psy8267 57 ISTFQRALKDPNQLIRASALRVLSSIRVPM--IIP-----IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE--- 126 (645)
Q Consensus 57 iNsl~kDL~~~N~~iralALr~ls~I~~~e--i~~-----~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~--- 126 (645)
+..+.+-|.++++.+|..|+++++++.... ... ..++.+.+++.++++.||..|+.++..+...+++..+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456778888999999999999998874322 222 2467778889999999999999999999877676542
Q ss_pred --HHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh---hhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCC
Q psy8267 127 --ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI---DMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDP 199 (645)
Q Consensus 127 --~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~---~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P 199 (645)
+.++.+.++|.+.++.|...|+.++..++.... ..+ .+.+..|++.|.+.++..+...+..|...+.. +|
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~---~~ 160 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG---PD 160 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---CH
Confidence 568889999999999999999999999984322 211 23467788889999999999999999888732 01
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCC-hH
Q psy8267 200 NLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP-RR 278 (645)
Q Consensus 200 ~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~-~~ 278 (645)
.. ...+.+ ...+..+..++++.++.|...|+.++.++.. ..
T Consensus 161 ~~-----------------------------------~~~~~~---~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 202 (252)
T 4hxt_A 161 EA-----------------------------------IKAIVD---AGGVEVLVKLLTSTDSEVQKEAARALANIASGPT 202 (252)
T ss_dssp HH-----------------------------------HHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH
T ss_pred HH-----------------------------------HHHHHH---CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 00 000000 1134555677888889999999999988764 22
Q ss_pred H-HH-----HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccch
Q psy8267 279 E-VA-----IIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALF 316 (645)
Q Consensus 279 ~-~~-----~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~ 316 (645)
. .. .+.+.|+.++. .++++|..++.+|..|....+.-.
T Consensus 203 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 203 SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEH 247 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCccc
Confidence 1 11 25678888885 678999999999999987665543
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.60 E-value=1.7e-06 Score=83.63 Aligned_cols=181 Identities=17% Similarity=0.168 Sum_probs=140.4
Q ss_pred CCCCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHH--HH---HHHHHHHHcCCCCHHHHHHHHHHHhCCCc--
Q psy8267 12 KGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLA--LL---SISTFQRALKDPNQLIRASALRVLSSIRV-- 84 (645)
Q Consensus 12 ~G~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~--lL---~iNsl~kDL~~~N~~iralALr~ls~I~~-- 84 (645)
-|++-...++-.++++.+++..++.-+..++..++..+++.. +. ++..+.+-|.++++.+|..|+.+|+++..
T Consensus 6 ~~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp -------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 456777888999999999999999999999998886665532 22 46788888999999999999999999863
Q ss_pred cccHHH-----HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy8267 85 PMIIPI-----VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEV 154 (645)
Q Consensus 85 ~ei~~~-----l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei 154 (645)
++..+. .++.+.+++.++++.||+.|+.++..+...+++.. .+.++.+.++|.+.++.|...|+.++..+
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 333222 35778889999999999999999999998777653 35788999999999999999999999998
Q ss_pred Chhh---hhhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy8267 155 CPER---IDMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYA 192 (645)
Q Consensus 155 ~~~~---~~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~ 192 (645)
+... ...+ .+.+..|++.+.+.++-.+......|..++
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 7432 1222 134677888888888988988888888765
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.55 E-value=1.3e-05 Score=78.90 Aligned_cols=175 Identities=21% Similarity=0.133 Sum_probs=139.2
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHhCCCcc--ccHHH-
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLAL-----LSISTFQRALKDPNQLIRASALRVLSSIRVP--MIIPI- 90 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~l-----L~iNsl~kDL~~~N~~iralALr~ls~I~~~--ei~~~- 90 (645)
..+..++++.+++.+++.-+--.+..++..+++..- =.+..+.+-|.++++.+|..|+.+|+++... +..+.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 356778888888888888888888888776654322 1577888999999999999999999998754 22222
Q ss_pred ----HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH-----HHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh--
Q psy8267 91 ----VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE-----ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI-- 159 (645)
Q Consensus 91 ----l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~-----~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~-- 159 (645)
.++.+.+++.++++.||..|+.++..+...+|+... +.++.+.++|.+.++.|...|+.++..++....
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 467788889999999999999999999987777542 568889999999999999999999999985322
Q ss_pred -h-hh-HHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 160 -D-MI-HKSYRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 160 -~-li-~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
. ++ .+.+..|++.|.+.++..+...+..|..++.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 1 11 2356778899999899999999999988873
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.55 E-value=4e-06 Score=83.26 Aligned_cols=178 Identities=17% Similarity=0.164 Sum_probs=138.8
Q ss_pred CcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchH--HH---HHHHHHHHHcCCCCHHHHHHHHHHHhCCCc--ccc
Q psy8267 15 DASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDL--AL---LSISTFQRALKDPNQLIRASALRVLSSIRV--PMI 87 (645)
Q Consensus 15 dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl--~l---L~iNsl~kDL~~~N~~iralALr~ls~I~~--~ei 87 (645)
+-...|+..++++.|++.+++.-+--.+..++..+++. .+ =++..+.+-|.++++.+|..|+.+|+++.. ++.
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 44567999999999999999988888885544332221 11 256778889999999999999999999875 332
Q ss_pred HHH-----HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 88 IPI-----VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 88 ~~~-----l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
.+. .++.+.+++.++++.||+.|+.++..+....+... .+.++.+.++|.+.++.|...|+.++..++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 222 56778899999999999999999999987665431 35788999999999999999999999999853
Q ss_pred hh---hhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy8267 158 RI---DMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYA 192 (645)
Q Consensus 158 ~~---~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~ 192 (645)
.. ..+ .+.+..|++.|.+.++..+...+..|..++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 22 211 234667889999889999999999998886
No 52
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.39 E-value=0.00026 Score=84.62 Aligned_cols=405 Identities=10% Similarity=0.112 Sum_probs=219.0
Q ss_pred HHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC---Ccc------ccHH----
Q psy8267 23 VVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI---RVP------MIIP---- 89 (645)
Q Consensus 23 vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I---~~~------ei~~---- 89 (645)
++....|+|-..| +--+|..+ +.+|+......+-+.. .+.++.+|-+|.-.+-+. ++. .+-+
T Consensus 10 ~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~--~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~ 84 (960)
T 1wa5_C 10 FLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAS--TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE 84 (960)
T ss_dssp HHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred HHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHH
Confidence 3444445555555 66666665 5667755544444432 234678898887766542 111 2322
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhh-h----hH
Q psy8267 90 IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL-DPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERID-M----IH 163 (645)
Q Consensus 90 ~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~-~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~-l----i~ 163 (645)
.+-..+..++.+.++.||++++.++.++.+. .|+.-+++++.+..++.+.++....+++.++.+++++.-. + ..
T Consensus 85 ~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~ 164 (960)
T 1wa5_C 85 LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELF 164 (960)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHH
Confidence 3334444555566799999999999999875 4655566778888888888888888888888888763210 0 00
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccCh
Q psy8267 164 KSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDP 243 (645)
Q Consensus 164 ~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~ 243 (645)
.....+++. + .-.+++++..... .+.++.. . ..
T Consensus 165 ~~l~~~l~~------~-~~~ll~~~~~~~~-~l~~~~~-~--------------------------------------~~ 197 (960)
T 1wa5_C 165 LEIKLVLDV------F-TAPFLNLLKTVDE-QITANEN-N--------------------------------------KA 197 (960)
T ss_dssp HHHHHHHHH------H-HHHHHHHHHHHHH-HTTCCC-----------------------------------------CH
T ss_pred HHHHHHHHH------H-HHHHHHHHHHHHH-HHHhcCC-C--------------------------------------HH
Confidence 001111110 0 1112232222110 0001100 0 00
Q ss_pred hHHHHHHhhhhhhcCCChHHHHHHHHHHHhcC----Ch---HHHHHHHHHHHHHhCC-------C---h------hHHHH
Q psy8267 244 DHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLA----PR---REVAIIAKALVRLLRS-------S---R------EVQTV 300 (645)
Q Consensus 244 d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~----~~---~~~~~~~~~L~~lL~s-------~---~------niryv 300 (645)
..+..+ .++..+++++.++. |. ..+......+.++|.. + . .+|--
T Consensus 198 ~~~~~~------------~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~ 265 (960)
T 1wa5_C 198 SLNILF------------DVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSS 265 (960)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHH
T ss_pred HHHHHH------------HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHH
Confidence 011111 12222344443321 21 1123344445555531 1 1 25666
Q ss_pred HHHHHHHHHhhcccchhhhhceEE--Ec--------CCCChHHHHHHHHHHHHccCcCCHH------HHHHHHH-----H
Q psy8267 301 VLTTIASLAVKRRALFVPYLKSFY--VR--------SSDPTHVKTLKLELLTTLASETSIA------SILREFQ-----T 359 (645)
Q Consensus 301 ~L~~l~~l~~~~p~~~~~~~~~f~--~l--------~~d~~~Ir~~kLdlL~~L~~~~Nv~------~Il~EL~-----~ 359 (645)
+++++.++...+++.|.+|...|+ +. ...+..++..+++.+..++...... ..+.+|. .
T Consensus 266 ~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~ 345 (960)
T 1wa5_C 266 IQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILP 345 (960)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHH
Confidence 788899999889988887776653 11 1345689999999999887542211 3344444 2
Q ss_pred hhc----c-----cc--------------HHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHhhc------cCChhhHHHH
Q psy8267 360 YIS----S-----VD--------------KAFVAATVQAIGKCAANIAQ-VTDTCLTGLVSLLS------YSDEAVVAES 409 (645)
Q Consensus 360 yl~----~-----~d--------------~~~~~~~i~~I~~la~k~~~-~~~~~v~~ll~LL~------~~~~~v~~e~ 409 (645)
++. + .| ...|..+...+..++.+++. ....++..+.+.++ ..+-...+.+
T Consensus 346 ~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaa 425 (960)
T 1wa5_C 346 NVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLY 425 (960)
T ss_dssp HHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHH
T ss_pred hcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 321 0 11 13566677788888888762 22334444444444 1111234445
Q ss_pred HHHHHHHhhcC-----C--------cchHHHHHHHHHhhccC--ChHHHHHHHHHHHhcccccCCC-chHHHHHHHHHhh
Q psy8267 410 VVVIKNLLQTQ-----P--------EAYTDIIRHMVRLSDSI--TVPTARAAILWLLGEYSHLVPA-LGPDVLRKAAITF 473 (645)
Q Consensus 410 v~~i~~il~~~-----p--------~~~~~~i~~L~~~l~~i--~~~~ak~~~iwilGEy~~~i~~-~~~diLr~l~~~f 473 (645)
+..+..+.... + ++.......+...+.+. ..|.+|.+++|++|.|++.++. ..+.++..+.+.+
T Consensus 426 l~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L 505 (960)
T 1wa5_C 426 IYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFL 505 (960)
T ss_dssp HHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh
Confidence 55555664321 1 22222233444445443 2688899999999999987632 3445677777888
Q ss_pred cCCchHHHHHHHHhhhhh
Q psy8267 474 VNEEDIVKLQVLNLAPVE 491 (645)
Q Consensus 474 ~~e~~~vk~~iL~~~~~~ 491 (645)
.+.++.||.....++...
T Consensus 506 ~d~~~~V~~~A~~Al~~~ 523 (960)
T 1wa5_C 506 QTDEYVVYTYAAITIEKI 523 (960)
T ss_dssp TCSCHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHH
Confidence 888899998888877653
No 53
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.37 E-value=5.6e-06 Score=81.03 Aligned_cols=190 Identities=13% Similarity=0.142 Sum_probs=146.3
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHChhh-----hhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCC
Q psy8267 127 ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNL 201 (645)
Q Consensus 127 ~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~-----~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~ 201 (645)
+-...+.++|.|+|+.|..+|+.++.++.... ...+...+..+++.+.+.|+=.-++.++.|.+.... .|-.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~---vpL~ 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD---VPMG 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT---CCBC
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC---CCCC
Confidence 35667889999999999999999999998542 234566777888888899999999999999988732 1211
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHH
Q psy8267 202 NENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVA 281 (645)
Q Consensus 202 ~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~ 281 (645)
+.+...+.+.+..++.+.|.....+++.....+.+....+
T Consensus 110 ----------------------------------------~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~ 149 (265)
T 3b2a_A 110 ----------------------------------------SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK 149 (265)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH
Confidence 1234567777888889999999999999998886544467
Q ss_pred HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhc--ccchhhhhceE-EEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHH
Q psy8267 282 IIAKALVRLLR-SSREVQTVVLTTIASLAVKR--RALFVPYLKSF-YVRSSDPTHVKTLKLELLTTLASETSIASILREF 357 (645)
Q Consensus 282 ~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~--p~~~~~~~~~f-~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL 357 (645)
.+.+.+.+++. .++.+|-+||+.+..++... |+++..-...+ +.+.++|++++.++|++|-.+.+..=.+.++.++
T Consensus 150 ~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~ 229 (265)
T 3b2a_A 150 LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL 229 (265)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH
Confidence 88899999994 67899999999999998865 45665544444 3566778999999999999999875555555555
Q ss_pred HH
Q psy8267 358 QT 359 (645)
Q Consensus 358 ~~ 359 (645)
..
T Consensus 230 ~~ 231 (265)
T 3b2a_A 230 LK 231 (265)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 54
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.35 E-value=3e-07 Score=82.94 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=60.4
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcC
Q psy8267 21 PAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSL 100 (645)
Q Consensus 21 ~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~ 100 (645)
+.+++++.+++..+|..+..++..+... . +..+.+-|+|+|+.+|..|+++|++++.++. .+.+.+++.
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a----~~~L~~~L~ 83 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMGDE--A-----FEPLLESLSNEDWRIRGAAAWIIGNFQDERA----VEPLIKLLE 83 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCSST--T-----HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHH----HHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCch--H-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHc
Confidence 3445555555555555444444333221 1 2455566666666666666666666665443 333344555
Q ss_pred CCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy8267 101 DMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFE 152 (645)
Q Consensus 101 d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ 152 (645)
|+++.||..|+.++.++. ++ +.++.|.++|+|+++.|..+|+.++.
T Consensus 84 d~~~~VR~~A~~aL~~~~--~~----~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIG--GE----RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HCCTHHHHHHHHHHHHHC--SH----HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHhC--cH----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666666666666666653 22 23444555666666666666655543
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.35 E-value=3.5e-07 Score=82.47 Aligned_cols=116 Identities=21% Similarity=0.213 Sum_probs=89.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhh
Q psy8267 57 ISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLL 136 (645)
Q Consensus 57 iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL 136 (645)
++.+.+.|+|+|+.+|..|+.+|+.++.+. .+.+.+++.|++|.||..|+.++.++. ++ ..++.+.++|
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~----~a~~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQ--DE----RAVEPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGC--SH----HHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcC--CH----HHHHHHHHHH
Confidence 456788899999999999999999999876 256678899999999999999999875 33 3456677888
Q ss_pred cCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy8267 137 QDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLT 189 (645)
Q Consensus 137 ~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~ 189 (645)
+|+++.|...|+.++..+.... ....|...|.+.++|.+......|.
T Consensus 83 ~d~~~~VR~~A~~aL~~~~~~~------a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIGGER------VRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHCSHH------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999887432 2345777788899998877776553
No 56
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.30 E-value=0.00024 Score=77.67 Aligned_cols=128 Identities=16% Similarity=0.260 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHHHHHccCcCC-H-----HHH------HHHHHHhhccccHHHHHHHHHHHHHHHhhcccc----HHHHH
Q psy8267 328 SDPTHVKTLKLELLTTLASETS-I-----ASI------LREFQTYISSVDKAFVAATVQAIGKCAANIAQV----TDTCL 391 (645)
Q Consensus 328 ~d~~~Ir~~kLdlL~~L~~~~N-v-----~~I------l~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~----~~~~v 391 (645)
+++..++..+.-.|.++|..++ . +.+ +.-|.+.+.+.|.+++++++.+|..++.. +.. ...++
T Consensus 295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~i~~~~i 373 (457)
T 1xm9_A 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVF 373 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTH
T ss_pred cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHHHHHhhh
Confidence 3456788888888888886432 1 222 34566777888889999999999888752 222 24577
Q ss_pred HHHHHhhccCCh------hhHHHHHHHHHHHhhcCCcchH-----HHHHHHHHhhccCChHHHHHHHHHHHhcccc
Q psy8267 392 TGLVSLLSYSDE------AVVAESVVVIKNLLQTQPEAYT-----DIIRHMVRLSDSITVPTARAAILWLLGEYSH 456 (645)
Q Consensus 392 ~~ll~LL~~~~~------~v~~e~v~~i~~il~~~p~~~~-----~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~ 456 (645)
..|+++|..++. .+...++..+.+++..+++... ..+..+.+++.+-..+.++..+.|+|..|..
T Consensus 374 ~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 778888887532 3555666677788877765432 4556677766654245676666899988864
No 57
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.30 E-value=1.3e-05 Score=79.54 Aligned_cols=174 Identities=18% Similarity=0.136 Sum_probs=136.6
Q ss_pred cchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHH---
Q psy8267 18 DLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALL-----SISTFQRALKDPNQLIRASALRVLSSIRVPMIIP--- 89 (645)
Q Consensus 18 ~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL-----~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~--- 89 (645)
.+.+..++++.+++.+++.-+.-++..++..+++.... .+..+.+-|.++|+.+|..|+.+|+++....-..
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence 36678899999999999999988998888765553221 5778888999999999999999999986543222
Q ss_pred ----HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh-
Q psy8267 90 ----IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI- 159 (645)
Q Consensus 90 ----~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~- 159 (645)
..++.+.+++.++++.||+.|+.++..+...+++.. .+.++.+.++|.++++.|...|+.++..++....
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 213 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 213 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 256788899999999999999999999998777653 3467889999999999999999999999984322
Q ss_pred --hh-hH-HHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy8267 160 --DM-IH-KSYRKLCNLLVDVDEWGQVFILNMLTRY 191 (645)
Q Consensus 160 --~l-i~-~~~~kL~~~L~~~~~W~Qv~iL~lL~~y 191 (645)
.. +. +.+..|++.+.+.++-.+......|..+
T Consensus 214 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 214 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 21 21 2456788888888888887777777654
No 58
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.22 E-value=0.00069 Score=76.18 Aligned_cols=99 Identities=18% Similarity=0.010 Sum_probs=52.7
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHCh----hhhhhh-
Q psy8267 93 LAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCP----ERIDMI- 162 (645)
Q Consensus 93 ~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~----~~~~li- 162 (645)
+.+.++|.+.++-++..|+.++.++...+++.. ...++.+.++|.+.++.|.-.|+.+|..++- ++-..+
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 334455666666677777766666665454432 2345666667766666666666666666653 111112
Q ss_pred -HHHHHHHHHHhcC-CCchhHHHHHHHHHHH
Q psy8267 163 -HKSYRKLCNLLVD-VDEWGQVFILNMLTRY 191 (645)
Q Consensus 163 -~~~~~kL~~~L~~-~~~W~Qv~iL~lL~~y 191 (645)
++.+..|++.|.. .++-.|-.....|..+
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNL 161 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 1234555555554 2333344444444433
No 59
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.21 E-value=7.3e-05 Score=74.24 Aligned_cols=200 Identities=15% Similarity=0.159 Sum_probs=141.4
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchh----HHHHHHHHHHhhc-CCChhHHHHHHHHHHHHChhh--
Q psy8267 86 MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ----KEELVLVIEKLLQ-DKTTLVVGSAVMAFEEVCPER-- 158 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~----~~~~~~~l~~lL~-D~~~~V~~sav~~l~ei~~~~-- 158 (645)
++...+-+.+.+.+.|+++.+|+.|+.++.++....|+. ..++.+.+.++|. |+++.|...|+.++..++..-
T Consensus 11 di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred cccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 333444455677888999999999999999988765442 3578888889994 999999988888888887431
Q ss_pred -h-hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccc
Q psy8267 159 -I-DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQ 236 (645)
Q Consensus 159 -~-~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~ 236 (645)
. ......+..+++.+.+..+-.+......|..+... .
T Consensus 91 ~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~------~----------------------------------- 129 (242)
T 2qk2_A 91 RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS------T----------------------------------- 129 (242)
T ss_dssp GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT------S-----------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc------C-----------------------------------
Confidence 1 12233456677778888777777777777766621 0
Q ss_pred cccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhc----CC----hHHHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Q psy8267 237 VSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHL----AP----RREVAIIAKALVRLLR-SSREVQTVVLTTIAS 307 (645)
Q Consensus 237 ~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l----~~----~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~ 307 (645)
....+++.+...+++.|+.|..+++..+..+ ++ ...+..+.+.|..+|. +++++|-.+..++..
T Consensus 130 -------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 130 -------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGT 202 (242)
T ss_dssp -------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 0234566666778889999999988877653 22 2356788889999996 778999999999999
Q ss_pred HHhhccc-chhhhhceEEEcCCCChHHHHHHHHH
Q psy8267 308 LAVKRRA-LFVPYLKSFYVRSSDPTHVKTLKLEL 340 (645)
Q Consensus 308 l~~~~p~-~~~~~~~~f~~l~~d~~~Ir~~kLdl 340 (645)
++...++ .|.+++..+ | ..|+.++.-
T Consensus 203 l~~~vg~~~~~~~l~~L-----~--~~~~~~i~~ 229 (242)
T 2qk2_A 203 LIKLMGDKAVTPLLADV-----D--PLKMAKIKE 229 (242)
T ss_dssp HHHHHCHHHHGGGGTTS-----C--HHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHhc-----C--HHHHHHHHH
Confidence 9876654 467776532 2 356655543
No 60
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.15 E-value=4.5e-05 Score=75.81 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=133.3
Q ss_pred CCcccchH-HHHHHhccCCchhHHHHHHHHHHhcccC-----chHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhCCCc--
Q psy8267 14 RDASDLFP-AVVKNVVSKNIEVKKLVYVYLARYAEEQ-----QDLALLSISTFQRALK-DPNQLIRASALRVLSSIRV-- 84 (645)
Q Consensus 14 ~dvs~lf~-~vvkli~s~~~~~KkL~Yl~l~~~~~~~-----~dl~lL~iNsl~kDL~-~~N~~iralALr~ls~I~~-- 84 (645)
.|+..-++ +..+.+.+++...|+-+...+..+.+.. ++. --+++.+.+-+. |+|..+|..|+++++.+..
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l 88 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGL 88 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 35544443 5778889999999999999988876652 232 234778888884 9999999999999988642
Q ss_pred ----cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC----h
Q psy8267 85 ----PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC----P 156 (645)
Q Consensus 85 ----~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~----~ 156 (645)
...++.+++.+.+.+.|+++.||..|+.|+..+....+ .+.+.+.+...|+|+++.|...++..+..+. |
T Consensus 89 ~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 89 AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp GGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 24566789999999999999999999999999987543 4678888999999999999999999888753 3
Q ss_pred hhh--hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 157 ERI--DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 157 ~~~--~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
+.. ..++.....|...|.+.++=..-...+.+..+++
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 321 2344555667777777666555566666666553
No 61
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.13 E-value=0.00013 Score=70.18 Aligned_cols=135 Identities=21% Similarity=0.169 Sum_probs=105.3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhCCCc--cccHH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH----
Q psy8267 58 STFQRALKDPNQLIRASALRVLSSIRV--PMIIP-----IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE---- 126 (645)
Q Consensus 58 Nsl~kDL~~~N~~iralALr~ls~I~~--~ei~~-----~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~---- 126 (645)
..+.+-|.++|+.+|..|+.+|+++.. ++..+ ..++.+.+++.++++.||..|+.++..+...+++...
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 356667899999999999999998853 23222 2467788999999999999999999999877776532
Q ss_pred -HHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh---h-hh-HHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy8267 127 -ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI---D-MI-HKSYRKLCNLLVDVDEWGQVFILNMLTRYA 192 (645)
Q Consensus 127 -~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~---~-li-~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~ 192 (645)
+.++.+.++|++.++.|...|+.++..++.... . ++ .+.+..|++.|.+.++-.+...+..|..++
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999984322 1 11 234677888888888878888888888776
No 62
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.02 E-value=0.0028 Score=71.24 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=92.7
Q ss_pred CCChHHHHHHHHHHHHccCcC-----CHH------HHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc---ccHHHHHHH
Q psy8267 328 SDPTHVKTLKLELLTTLASET-----SIA------SILREFQTYISSVDKAFVAATVQAIGKCAANIA---QVTDTCLTG 393 (645)
Q Consensus 328 ~d~~~Ir~~kLdlL~~L~~~~-----Nv~------~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~---~~~~~~v~~ 393 (645)
.....++..+...|.+||..+ .++ ..+.-|.+.+.+.+...++.++.+++.|+.--. .....++.-
T Consensus 320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~ 399 (584)
T 3l6x_A 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPN 399 (584)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHH
Confidence 345678888888887776532 222 335667788888888999999999999885321 123467788
Q ss_pred HHHhhccCC--------hhhHHHHHHHHHHHhhcCCcchH-----HHHHHHHHhhccC-ChHHHHHHHHHHHhccccc
Q psy8267 394 LVSLLSYSD--------EAVVAESVVVIKNLLQTQPEAYT-----DIIRHMVRLSDSI-TVPTARAAILWLLGEYSHL 457 (645)
Q Consensus 394 ll~LL~~~~--------~~v~~e~v~~i~~il~~~p~~~~-----~~i~~L~~~l~~i-~~~~ak~~~iwilGEy~~~ 457 (645)
|+++|..+. +.+...+...+.+|+..+|+... ..+..|..++.+- ..+.++..++|++......
T Consensus 400 LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 400 LVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 999998762 45777788888899888776543 4689999998764 3566666668999987653
No 63
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.01 E-value=0.00076 Score=63.64 Aligned_cols=209 Identities=16% Similarity=0.186 Sum_probs=131.5
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHH-HHHHHHHHHHChhhhhhhHHHHHH
Q psy8267 90 IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVV-GSAVMAFEEVCPERIDMIHKSYRK 168 (645)
Q Consensus 90 ~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~-~sav~~l~ei~~~~~~li~~~~~k 168 (645)
.+...+.+.+.|.-+-|+|.|..-+..+.+-.||..+.+...+..++.-+...=. .....+|..+...+++++.+.+.-
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~ 111 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPV 111 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHH
Confidence 3455567778888888888888888888888888888777777777653332222 222334444433344433322221
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHH
Q psy8267 169 LCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLL 248 (645)
Q Consensus 169 L~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~l 248 (645)
+.. .|.- -|+..+.
T Consensus 112 lfa------------------nyri-----------------------------------------------gd~kikI- 125 (253)
T 2db0_A 112 LFA------------------NYRI-----------------------------------------------GDEKTKI- 125 (253)
T ss_dssp HHH------------------HSCC-----------------------------------------------CSHHHHH-
T ss_pred HHH------------------HHhc-----------------------------------------------CCcccee-
Confidence 111 1110 0111111
Q ss_pred HHhhhhhhcCCChHHHH-HHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhhhceEE-E
Q psy8267 249 LKNAKPLLQSRNAAVVM-AVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPYLKSFY-V 325 (645)
Q Consensus 249 l~~~~~ll~s~n~aVv~-ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~-~ 325 (645)
|-+-++ |.++ +.++.+..++.-++.+++ .+..=|..+|.-|.-|...++..+.|++..++ +
T Consensus 126 -----------n~~yaLeeIar-----anP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aL 189 (253)
T 2db0_A 126 -----------NVSYALEEIAK-----ANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINL 189 (253)
T ss_dssp -----------HHHHHHHHHHH-----HCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGG
T ss_pred -----------cHHHHHHHHHH-----hChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHH
Confidence 111122 1111 122455667777788886 45677888999888888888888899999888 7
Q ss_pred cCCCChHHHHHHHHHHHHccCcCC-HHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy8267 326 RSSDPTHVKTLKLELLTTLASETS-IASILREFQTYISSVDKAFVAATVQAIGKCA 380 (645)
Q Consensus 326 l~~d~~~Ir~~kLdlL~~L~~~~N-v~~Il~EL~~yl~~~d~~~~~~~i~~I~~la 380 (645)
++|+|.-||.-+.|.|..+++.+- +..++.+-++-+.+.+..+..++..++++++
T Consensus 190 L~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 190 LHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 899999999999999998876431 5556655555566666677777777777765
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.93 E-value=0.0026 Score=69.43 Aligned_cols=116 Identities=11% Similarity=0.027 Sum_probs=77.6
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhCCC--ccccHHH-----HHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHH----
Q psy8267 58 STFQRALKDPNQLIRASALRVLSSIR--VPMIIPI-----VMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKE---- 126 (645)
Q Consensus 58 Nsl~kDL~~~N~~iralALr~ls~I~--~~ei~~~-----l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~---- 126 (645)
..+.+-|.++|+.++..|..++.++. .++.-.. .++.+.+++.++++.+++.|+.|+..+...+|+...
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455566677777777777766653 2222212 246677888888899999999999888876566532
Q ss_pred -HHHHHHHHhhc-CCChhHHHHHHHHHHHHChh---hhhhhHHHHHHHHHHh
Q psy8267 127 -ELVLVIEKLLQ-DKTTLVVGSAVMAFEEVCPE---RIDMIHKSYRKLCNLL 173 (645)
Q Consensus 127 -~~~~~l~~lL~-D~~~~V~~sav~~l~ei~~~---~~~li~~~~~kL~~~L 173 (645)
+.++.+.++|. +.++.+.-.|+.++..++.. +..++.+.+..|++.|
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 34778888888 77888888888888877632 1123335566677777
No 65
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.0013 Score=75.64 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhCCCc-----cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH------HHHHHHHHHhhc
Q psy8267 69 QLIRASALRVLSSIRV-----PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK------EELVLVIEKLLQ 137 (645)
Q Consensus 69 ~~iralALr~ls~I~~-----~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~------~~~~~~l~~lL~ 137 (645)
+.+|.+|+-.|++++. ..=+..+...+++.+.++..-.|+-|+-++.-+ ..+|+.. +.+++.|.++++
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~~~VKe~L~~d~~~L~~Lv~llk 386 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYL-SLKASVKIMIRSNESFTEILLTMIK 386 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH-TTSSHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hCCHHHHHHHHhCHHHHHHHHHHHh
Confidence 6889999888887652 233455778888888887655699999988765 5788764 356788888998
Q ss_pred C-CChhHHHHHHHHHHHHC
Q psy8267 138 D-KTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 138 D-~~~~V~~sav~~l~ei~ 155 (645)
+ .+..+...++..+..++
T Consensus 387 ~~~d~s~~Ygal~IL~NLt 405 (778)
T 3opb_A 387 SQKMTHCLYGLLVIMANLS 405 (778)
T ss_dssp TTCCTTHHHHHHHHHHHTT
T ss_pred CCCCchHHHHHHHHHHHhc
Confidence 5 67778888989888877
No 66
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.0004 Score=69.72 Aligned_cols=201 Identities=16% Similarity=0.188 Sum_probs=138.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHH-HhhcCchhH------HHHHHHHHHhh-cCCChhHHHHHHHHHHHHChh----hhh-
Q psy8267 94 AIKDSSLDMSPYVRKTAAHAIPK-LYSLDPEQK------EELVLVIEKLL-QDKTTLVVGSAVMAFEEVCPE----RID- 160 (645)
Q Consensus 94 ~I~~~l~d~~pyVRK~Aalal~k-l~~~~p~~~------~~~~~~l~~lL-~D~~~~V~~sav~~l~ei~~~----~~~- 160 (645)
...+.+.++++.-||.|+.++.. +..-.|+.. .++++.+.+.| +|.|+.|+..|+.++..++.. .+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44567789999999999999999 876555432 46788888899 799999999888888887632 222
Q ss_pred -hhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccccccc
Q psy8267 161 -MIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVST 239 (645)
Q Consensus 161 -li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~ 239 (645)
+....+..++..+.+..+=.+-.+-..|..++.. .+|...
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~--~~~~~~------------------------------------- 140 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY--YDPLAS------------------------------------- 140 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH--SCTTCT-------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--cccccc-------------------------------------
Confidence 2223455677777776655555555555555532 123110
Q ss_pred ccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhc---CC---h---HHH-HHHHHHHHHHhC-CChhHHHHHHHHHHHH
Q psy8267 240 ELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHL---AP---R---REV-AIIAKALVRLLR-SSREVQTVVLTTIASL 308 (645)
Q Consensus 240 ~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l---~~---~---~~~-~~~~~~L~~lL~-s~~niryv~L~~l~~l 308 (645)
.+.+..+++.+...++|.|+.|..++++++..+ .+ . ..+ ..+++.|..++. +++++|-.+.+++..+
T Consensus 141 --~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 141 --SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp --TCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 000234666667788999999999998877643 22 1 246 678888999996 7889999999999998
Q ss_pred Hhhccc-chhhhhceEEEcCCCChHHHHHHHHHHH
Q psy8267 309 AVKRRA-LFVPYLKSFYVRSSDPTHVKTLKLELLT 342 (645)
Q Consensus 309 ~~~~p~-~~~~~~~~f~~l~~d~~~Ir~~kLdlL~ 342 (645)
...-.+ .|.+|+..+ | .+|+.|+.-.+
T Consensus 219 ~~~vG~~~~~p~l~~L-----d--~~k~~ki~~~~ 246 (249)
T 2qk1_A 219 IKIFGMNTFVKTLEHL-----D--NLKRKKIEETV 246 (249)
T ss_dssp HHHHCSGGGHHHHHHS-----C--HHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH-----h--HHHHHHHHHHH
Confidence 876554 578887754 2 47887776543
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.89 E-value=0.0081 Score=70.52 Aligned_cols=324 Identities=11% Similarity=0.088 Sum_probs=174.9
Q ss_pred HHHhCCCCcccchHHHHHHhccCCchhHHHHHH-HHHHhcccCchHHHHHHHHHHHHcC---CCCHHHHHHHHHHHhCCC
Q psy8267 8 YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYV-YLARYAEEQQDLALLSISTFQRALK---DPNQLIRASALRVLSSIR 83 (645)
Q Consensus 8 ~l~~~G~dvs~lf~~vvkli~s~~~~~KkL~Yl-~l~~~~~~~~dl~lL~iNsl~kDL~---~~N~~iralALr~ls~I~ 83 (645)
+.|..|.-.+.++..-..-+..++ ...|++=+ .+.....-+.+-. ...+.+-|- +.++++++-|+-.+|-|.
T Consensus 348 af~naG~~~D~~l~~~~~Wl~k~~-~~~k~sA~aSLGlIh~g~~~~g---l~~L~~yL~~~~s~~~~ik~GAllaLGli~ 423 (963)
T 4ady_A 348 GFMHAGTTDNSFIKANLPWLGKAQ-NWAKFTATASLGVIHKGNLLEG---KKVMAPYLPGSRASSRFIKGGSLYGLGLIY 423 (963)
T ss_dssp HHHTTTTCCCHHHHHCHHHHHHCC-THHHHHHHHHHHHHTSSCTTTH---HHHHTTTSTTSCCSCHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCcchhhhcchhhhhccc-hHHHHHHHHHhhhhccCchHHH---HHHHHHhccccCCCcHHHHHHHHHHHHHhc
Confidence 466677665555543332232222 22233332 2222222222212 233455554 678999999999998774
Q ss_pred ccccHHHHHHHHHhhcCCCC--------hHHHHHHHHHHHHHhh--cCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy8267 84 VPMIIPIVMLAIKDSSLDMS--------PYVRKTAAHAIPKLYS--LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEE 153 (645)
Q Consensus 84 ~~ei~~~l~~~I~~~l~d~~--------pyVRK~Aalal~kl~~--~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~e 153 (645)
...--+ ....+...+.+.+ +.||..|++++.-+|- -+++ ..+.|..+|.|.+..+...|..++.-
T Consensus 424 ag~~~~-~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee----v~e~L~~~L~dd~~~~~~~AalALGl 498 (963)
T 4ady_A 424 AGFGRD-TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE----VYEALKEVLYNDSATSGEAAALGMGL 498 (963)
T ss_dssp TTTTHH-HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH----HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcHH-HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 332111 2333444444443 8999999999999874 3333 45556677777776444355555554
Q ss_pred H--ChhhhhhhHHHHHHHHHHhc--CCCchhHHHHHHH-HHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccc
Q psy8267 154 V--CPERIDMIHKSYRKLCNLLV--DVDEWGQVFILNM-LTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTR 228 (645)
Q Consensus 154 i--~~~~~~li~~~~~kL~~~L~--~~~~W~Qv~iL~l-L~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~ 228 (645)
+ ...+.+.+ ..|+..+. +-+.|..-..+.+ +..|. +|..
T Consensus 499 i~vGTgn~~ai----~~LL~~~~e~~~e~vrR~aalgLGll~~g-----~~e~--------------------------- 542 (963)
T 4ady_A 499 CMLGTGKPEAI----HDMFTYSQETQHGNITRGLAVGLALINYG-----RQEL--------------------------- 542 (963)
T ss_dssp HHTTCCCHHHH----HHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----CGGG---------------------------
T ss_pred hhcccCCHHHH----HHHHHHHhccCcHHHHHHHHHHHHhhhCC-----ChHH---------------------------
Confidence 4 22222222 23333332 2334443333322 11111 1200
Q ss_pred cccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHH--hcCChHHHHHHHHHHHHHhC--CChhHHHHHHHH
Q psy8267 229 DTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFH--HLAPRREVAIIAKALVRLLR--SSREVQTVVLTT 304 (645)
Q Consensus 229 ~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~--~l~~~~~~~~~~~~L~~lL~--s~~niryv~L~~ 304 (645)
. ..+++. +..+.++.|.+.++-++. +.++.. ..++..|+..+. .+.++|-.+.-.
T Consensus 543 ------------~----~~li~~---L~~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~~~d~~d~VRraAVia 601 (963)
T 4ady_A 543 ------------A----DDLITK---MLASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVAVSDSNDDVRRAAVIA 601 (963)
T ss_dssp ------------G----HHHHHH---HHHCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ------------H----HHHHHH---HHhCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 1 112221 234567777777665442 233321 245555555553 456788888888
Q ss_pred HHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc
Q psy8267 305 IASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIA 384 (645)
Q Consensus 305 l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~ 384 (645)
|..+....|+...+.+. + ...+.+..||+-+---|-.++..+.-..+++-|..+..+.|..+|+.++.++|.+...-.
T Consensus 602 LGlI~~g~~e~v~rlv~-~-L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 602 LGFVLLRDYTTVPRIVQ-L-LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHTSSSCSSHHHHTT-T-GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHhhccCCHHHHHHHHH-H-HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 88877666665433222 1 123445788888887777777666567788877778888888888888888888775433
Q ss_pred cc----HHHHHHHHHHhhc
Q psy8267 385 QV----TDTCLTGLVSLLS 399 (645)
Q Consensus 385 ~~----~~~~v~~ll~LL~ 399 (645)
.. ....+..+.+...
T Consensus 680 na~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 680 EKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHh
Confidence 32 3444444444444
No 68
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.87 E-value=0.0032 Score=68.90 Aligned_cols=281 Identities=14% Similarity=0.147 Sum_probs=170.5
Q ss_pred ChHHHHHHHHHHHHHhhcCchhHHH-----HH----------HHHHHhhcCC--------ChhH-------HHHHHHHHH
Q psy8267 103 SPYVRKTAAHAIPKLYSLDPEQKEE-----LV----------LVIEKLLQDK--------TTLV-------VGSAVMAFE 152 (645)
Q Consensus 103 ~pyVRK~Aalal~kl~~~~p~~~~~-----~~----------~~l~~lL~D~--------~~~V-------~~sav~~l~ 152 (645)
++-+|..|+-|+..+-.-.||.... .. +.+.+++... ++ | ...|+.++.
T Consensus 95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNP-MPAPVEHQICPAVCVLM 173 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC---CCCTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCC-ccchhhHHHHHHHHHHH
Confidence 4799999999999999999986421 22 2223344322 11 3 236788888
Q ss_pred HHC--hhhhhhhH--HHHHHHHHHhcC-----------CCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCC
Q psy8267 153 EVC--PERIDMIH--KSYRKLCNLLVD-----------VDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGED 217 (645)
Q Consensus 153 ei~--~~~~~li~--~~~~kL~~~L~~-----------~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~ 217 (645)
.+. +++-+.+. +.+..|++.|.. .++-.|......|...++. ++..
T Consensus 174 nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~---~~~~---------------- 234 (458)
T 3nmz_A 174 KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG---DVAN---------------- 234 (458)
T ss_dssp HHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTT---CHHH----------------
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCC---Cccc----------------
Confidence 775 22222222 234556666631 1233456666667776632 0000
Q ss_pred CCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCCh--HH----HH--HHHHHHHH
Q psy8267 218 KKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR--RE----VA--IIAKALVR 289 (645)
Q Consensus 218 ~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~--~~----~~--~~~~~L~~ 289 (645)
+..+. ...-.+..+..+|++.+..|.-.|+.++.+++.. .. +. .++.+|+.
T Consensus 235 --------------------k~~i~-~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 235 --------------------KATLC-SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293 (458)
T ss_dssp --------------------HHHHH-HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred --------------------HHHHH-HcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence 00000 0012355556788888899999999998887642 22 22 25678999
Q ss_pred Hh-C-CChhHHHHHHHHHHHHHhhcc----cchh--hhhceEE-EcC-CCCh---HHHHHHHHHHHHcc-----CcCCHH
Q psy8267 290 LL-R-SSREVQTVVLTTIASLAVKRR----ALFV--PYLKSFY-VRS-SDPT---HVKTLKLELLTTLA-----SETSIA 351 (645)
Q Consensus 290 lL-~-s~~niryv~L~~l~~l~~~~p----~~~~--~~~~~f~-~l~-~d~~---~Ir~~kLdlL~~L~-----~~~Nv~ 351 (645)
+| + .+++++--++.++..|+...+ .+.. .-+..+. .+. .++. .++..+.-+|..|+ +++|.+
T Consensus 294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 373 (458)
T 3nmz_A 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 373 (458)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 75 4 457888888888888876332 2221 1111111 122 2222 58888888888876 556665
Q ss_pred HHH-----HHHHHhhccccHHHHHHHHHHHHHHHhhccccH-----HHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCC
Q psy8267 352 SIL-----REFQTYISSVDKAFVAATVQAIGKCAANIAQVT-----DTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQP 421 (645)
Q Consensus 352 ~Il-----~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~-----~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p 421 (645)
.++ .-|...+.+.+.+.+++++.+|+.++...+... .-++..|++||..+...+...+...+.+|..++|
T Consensus 374 ~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 374 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 543 457777778888888888888888885433322 3456778888887777788888888888888888
Q ss_pred cch
Q psy8267 422 EAY 424 (645)
Q Consensus 422 ~~~ 424 (645)
..+
T Consensus 454 ~ky 456 (458)
T 3nmz_A 454 AKY 456 (458)
T ss_dssp CC-
T ss_pred hhh
Confidence 655
No 69
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.82 E-value=0.0028 Score=75.74 Aligned_cols=125 Identities=13% Similarity=0.161 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHHhcccCchHHH-HHHHHHHHHcC------CCCHHHHHHHHHHHhCCCc---------c------ccHH
Q psy8267 32 IEVKKLVYVYLARYAEEQQDLAL-LSISTFQRALK------DPNQLIRASALRVLSSIRV---------P------MIIP 89 (645)
Q Consensus 32 ~~~KkL~Yl~l~~~~~~~~dl~l-L~iNsl~kDL~------~~N~~iralALr~ls~I~~---------~------ei~~ 89 (645)
.+.++-+.-.+..++...++..+ .+.+.++.=+. ++|-..|-.|+.++|.+.. . ++.+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 45666666666666665554322 22223222222 4566777788887776621 1 4555
Q ss_pred HHHHHHHhhcCCC---ChHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHCh
Q psy8267 90 IVMLAIKDSSLDM---SPYVRKTAAHAIPKLYSL-DPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 90 ~l~~~I~~~l~d~---~pyVRK~Aalal~kl~~~-~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~ 156 (645)
.+...+...+.|+ +|+||..|+.++.++... .|+..+..++.+.+.|.|+++.|..+|..|+..++.
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 5555556666777 899999999999887654 455566777777778888888888888888887664
No 70
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.012 Score=67.82 Aligned_cols=376 Identities=14% Similarity=0.130 Sum_probs=215.1
Q ss_pred CCCCHHHHHHHHHHHhCCCcccc-----HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCch---hHHHHHHHHHHhh
Q psy8267 65 KDPNQLIRASALRVLSSIRVPMI-----IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE---QKEELVLVIEKLL 136 (645)
Q Consensus 65 ~~~N~~iralALr~ls~I~~~ei-----~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~---~~~~~~~~l~~lL 136 (645)
..+++.+....|+.++..+..+- .+...+.+.+.+.+ ..+|..|+.++.|+...... .+.++.+.+.+.|
T Consensus 266 ~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L 343 (778)
T 3opb_A 266 EEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAI 343 (778)
T ss_dssp SSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence 34556677777888876655443 34445666666654 68999999999999864322 3578999999999
Q ss_pred cCCChhHHHHHHHHHHHHC--hhhhhhh---HHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCC
Q psy8267 137 QDKTTLVVGSAVMAFEEVC--PERIDMI---HKSYRKLCNLLVD-VDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDD 210 (645)
Q Consensus 137 ~D~~~~V~~sav~~l~ei~--~~~~~li---~~~~~kL~~~L~~-~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~ 210 (645)
.+.+......|+-++..+. |+--+.+ .+...+|+.++.. .+.=.+.-++.+|...... .|...++ ..++
T Consensus 344 ~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~---~~~~~~e-~~~l- 418 (778)
T 3opb_A 344 SRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL---PEEXXXX-XXXX- 418 (778)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC---CCCCCCC-CC---
T ss_pred hcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC---Ccccchh-hhhh-
Confidence 8876655667777776554 3211212 3456778888874 4555666777777766642 1221110 0010
Q ss_pred CCCCCCCCCCCcCCcccccccccc---------c-ccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHH-
Q psy8267 211 DDLDGEDKKPFYDDETTRDTKNET---------S-QVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRRE- 279 (645)
Q Consensus 211 ~~l~~~~~~~f~~~~~~~~~~~~~---------~-~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~- 279 (645)
..| +.|-....++....+. + ....+.+.. .+..+..++.+.++.+.-.|++++.+++....
T Consensus 419 ~~L-----k~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaG---vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 419 XXX-----XXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTE---LISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp ---------------------CCTHHHHHHHHHHHHHHHTTTTT---HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred hhh-----hhhccccCcccCcccccccchHHHHHHHHHHHHHCc---CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 011 2222110000000000 0 112222221 33444567778888999999999998864322
Q ss_pred ---H-H-HHHHHHHHHhCCC-hh---HHHHHHHHHHHHHh-hcccc-hhhh--hce---EE-EcCCCC------------
Q psy8267 280 ---V-A-IIAKALVRLLRSS-RE---VQTVVLTTIASLAV-KRRAL-FVPY--LKS---FY-VRSSDP------------ 330 (645)
Q Consensus 280 ---~-~-~~~~~L~~lL~s~-~n---iryv~L~~l~~l~~-~~p~~-~~~~--~~~---f~-~l~~d~------------ 330 (645)
+ + .+.++|+.+|.+. .+ .|..+..+|.++.. .+|.. |..+ +.. ++ .+..++
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 2 2 3668999999644 22 79999999999874 34543 2211 010 11 122111
Q ss_pred h--HHHHHHHHHHHHccCcC-C-----HHHHHH------HHHHhhccccHHHHHHHHHHHHHHHhhccc----c------
Q psy8267 331 T--HVKTLKLELLTTLASET-S-----IASILR------EFQTYISSVDKAFVAATVQAIGKCAANIAQ----V------ 386 (645)
Q Consensus 331 ~--~Ir~~kLdlL~~L~~~~-N-----v~~Il~------EL~~yl~~~d~~~~~~~i~~I~~la~k~~~----~------ 386 (645)
. --+..+|-.|++|+.-. | -..|++ .|.+++.+.+..+++++...|+.++..-.. .
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 1 12778888888888864 2 233554 455677777888999999999988742111 0
Q ss_pred -HHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcch------HHHHHHHHHhhccC-ChHHHH---HHHHHHHhccc
Q psy8267 387 -TDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAY------TDIIRHMVRLSDSI-TVPTAR---AAILWLLGEYS 455 (645)
Q Consensus 387 -~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~------~~~i~~L~~~l~~i-~~~~ak---~~~iwilGEy~ 455 (645)
....++.|+.|+...+..+...+.-.+..+-..+|... ...+..+.+.+.+. .+++++ +.+++-+.||+
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 12247889999987776666666555555544454321 24555666666653 444442 34456677765
No 71
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00058 Score=68.53 Aligned_cols=170 Identities=14% Similarity=0.150 Sum_probs=128.8
Q ss_pred HHHhccCCchhHHHHHHHHHH-hcccCchHH------HHHHHHHHHHc-CCCCHHHHHHHHHHHhCCCc----cc----c
Q psy8267 24 VKNVVSKNIEVKKLVYVYLAR-YAEEQQDLA------LLSISTFQRAL-KDPNQLIRASALRVLSSIRV----PM----I 87 (645)
Q Consensus 24 vkli~s~~~~~KkL~Yl~l~~-~~~~~~dl~------lL~iNsl~kDL-~~~N~~iralALr~ls~I~~----~e----i 87 (645)
-..++|++-.+|+=++..+.. +.+..+++. .-.+..+.+-+ +|+|..+|..|+++++.+.. +. .
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 345689999999999999998 875433321 23477888999 79999999999999987521 33 4
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhc-Cchh----HHHHHHHHHHhhcCCChhHHHHHHHHHHHHChh-----
Q psy8267 88 IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL-DPEQ----KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE----- 157 (645)
Q Consensus 88 ~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~-~p~~----~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~----- 157 (645)
...+++.+...+.|+.+-||..|..|+-.++.. +|.. .+.+++.|...|+++++.|...++..+..+...
T Consensus 102 ~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence 466788999999999999999999999998874 3332 457888889999999999999988888777632
Q ss_pred -hh-hhh-HHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 158 -RI-DMI-HKSYRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 158 -~~-~li-~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
.. ..+ ......|.+.+.+.++=......+.+...++
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 123 3445667778888887777777777777664
No 72
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.73 E-value=0.011 Score=70.24 Aligned_cols=167 Identities=15% Similarity=0.037 Sum_probs=93.9
Q ss_pred HHHHH-hccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC---Cc----cccHHHHHH
Q psy8267 22 AVVKN-VVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI---RV----PMIIPIVML 93 (645)
Q Consensus 22 ~vvkl-i~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I---~~----~ei~~~l~~ 93 (645)
.+++. ..++|.+.|+-+.-+|..+- .+|+-...+..-+. .+.++.+|-.|+.++-+. ++ ++-.+.+-.
T Consensus 28 ~~l~~l~~~~~~~~r~~A~~~L~~~~-~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~ 103 (963)
T 2x19_B 28 KALHQLYYDPNIENKNLAQKWLMQAQ-VSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA 103 (963)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHH-HSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHH
Confidence 44444 44688889999998887764 45663222222222 367899999998888653 21 122223333
Q ss_pred HHHhhcC---CCChHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHhhcC-----CChhHHHHHHHHHHHHChh----hh-
Q psy8267 94 AIKDSSL---DMSPYVRKTAAHAIPKLYSL-DPEQKEELVLVIEKLLQD-----KTTLVVGSAVMAFEEVCPE----RI- 159 (645)
Q Consensus 94 ~I~~~l~---d~~pyVRK~Aalal~kl~~~-~p~~~~~~~~~l~~lL~D-----~~~~V~~sav~~l~ei~~~----~~- 159 (645)
.+.+.+. +..++||.+.+.++..+.+. .|+.-+++++.+..+++. .++..+-.++..+..++.+ +.
T Consensus 104 ~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~ 183 (963)
T 2x19_B 104 QLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLP 183 (963)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCc
Confidence 3333332 24699999999999999875 355445566666677764 2443444555554433321 00
Q ss_pred --------hhhHHHHHH----HHHHhcCC--CchhHHHHHHHHHHHH
Q psy8267 160 --------DMIHKSYRK----LCNLLVDV--DEWGQVFILNMLTRYA 192 (645)
Q Consensus 160 --------~li~~~~~k----L~~~L~~~--~~W~Qv~iL~lL~~y~ 192 (645)
+.+..++.. +...+.+. +.|....+++.+..+.
T Consensus 184 ~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi 230 (963)
T 2x19_B 184 QYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWV 230 (963)
T ss_dssp --------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Confidence 111112222 22333332 2377888888887776
No 73
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.58 E-value=0.0013 Score=67.75 Aligned_cols=179 Identities=13% Similarity=0.066 Sum_probs=128.3
Q ss_pred CCcccchHHHHHHhccCCc------------hhHHHHHHHHHHhcccCchHHH-----HHHHHHHH-HcCCCCHHHHHHH
Q psy8267 14 RDASDLFPAVVKNVVSKNI------------EVKKLVYVYLARYAEEQQDLAL-----LSISTFQR-ALKDPNQLIRASA 75 (645)
Q Consensus 14 ~dvs~lf~~vvkli~s~~~------------~~KkL~Yl~l~~~~~~~~dl~l-----L~iNsl~k-DL~~~N~~iralA 75 (645)
.|......++++.+.++.. +.|...--.+..+.+ +.|.+. =.+..+.+ -|.++++.+|..|
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHH
Confidence 5566667778888877531 344444334445544 233222 13455666 8999999999999
Q ss_pred HHHHhCCCc--cccHH-----HHHHHHHhhcC-CCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChh
Q psy8267 76 LRVLSSIRV--PMIIP-----IVMLAIKDSSL-DMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTL 142 (645)
Q Consensus 76 Lr~ls~I~~--~ei~~-----~l~~~I~~~l~-d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~ 142 (645)
+.+||++.. ++.-+ -.++.+.+++. ++++-||++|+.|+..+.+-+|+.. .+.++.|..+|.+.++.
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~ 182 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK 182 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 999999843 22222 24566777777 4689999999999999998777643 24677899999999999
Q ss_pred HHHHHHHHHHHHCh---hhhhhh--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 143 VVGSAVMAFEEVCP---ERIDMI--HKSYRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 143 V~~sav~~l~ei~~---~~~~li--~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
|...|+.++..++. +....+ .+.+..|+..|...++=.|...++.|....+
T Consensus 183 v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 99999999988873 332222 2357889999999899899999999988874
No 74
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.54 E-value=0.0043 Score=65.57 Aligned_cols=252 Identities=13% Similarity=0.115 Sum_probs=142.9
Q ss_pred CCCCHHHHHHHHHHHhCCCccccHHH------HHHHHHhhcC-----------CCChHHHHHHHHHHHHHhhcCchh---
Q psy8267 65 KDPNQLIRASALRVLSSIRVPMIIPI------VMLAIKDSSL-----------DMSPYVRKTAAHAIPKLYSLDPEQ--- 124 (645)
Q Consensus 65 ~~~N~~iralALr~ls~I~~~ei~~~------l~~~I~~~l~-----------d~~pyVRK~Aalal~kl~~~~p~~--- 124 (645)
..|++...+.|+.+|+++...+-... .++.+.+++. +.++-+|+.|+.++..+...+++.
T Consensus 42 ~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 42 PAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp CCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44555777889999988754321111 1233344442 136789999999999988665532
Q ss_pred H---HHHHHHHHHhhcCCChhHHHHHHHHHHHHChh-hhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCC
Q psy8267 125 K---EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE-RIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPN 200 (645)
Q Consensus 125 ~---~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~-~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~ 200 (645)
+ ...++.|.++|.+.++.|...|+.++..+.-. +.+ .+.. +.+ -
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~-----~k~~--------------i~~------------~- 169 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-----SKKT--------------LRE------------V- 169 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHH-----HHHH--------------HHH------------T-
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHH-----HHHH--------------HHH------------C-
Confidence 2 34588888999988888888888877766421 110 0000 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhh-hcCCChHHHHHHHHHHHhcCC-hH
Q psy8267 201 LNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPL-LQSRNAAVVMAVAQLFHHLAP-RR 278 (645)
Q Consensus 201 ~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~l-l~s~n~aVv~ea~~~i~~l~~-~~ 278 (645)
+ .+..+..+ +++.+..+.-.|+.++.+++. ..
T Consensus 170 -----------------------------------------G-----~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 170 -----------------------------------------G-----SVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp -----------------------------------------T-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------------------------------C-----CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 0 01111111 233344555555666665543 11
Q ss_pred ----HH---HHHHHHHHHHhCCC-h----hHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccC
Q psy8267 279 ----EV---AIIAKALVRLLRSS-R----EVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLAS 346 (645)
Q Consensus 279 ----~~---~~~~~~L~~lL~s~-~----niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~ 346 (645)
.+ ..+..+|+++|.+. + +++.-+..+|..++.. + . .+
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~--------~------a-----------------~~ 252 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL--------I------A-----------------TN 252 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH--------H------T-----------------TC
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh--------c------c-----------------CC
Confidence 11 12556777777532 1 2444444444333320 0 0 02
Q ss_pred cCCHHH-----HHHHHHHhhccccHHHHHHHHHHHHHHHhhccccH-----HHHHHHHHHhhccCChhhHHHHHHHHHHH
Q psy8267 347 ETSIAS-----ILREFQTYISSVDKAFVAATVQAIGKCAANIAQVT-----DTCLTGLVSLLSYSDEAVVAESVVVIKNL 416 (645)
Q Consensus 347 ~~Nv~~-----Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~-----~~~v~~ll~LL~~~~~~v~~e~v~~i~~i 416 (645)
++|.+. .+.-|.+.+.+.+.+.+++++.+|+.++...++.. .-++..|++||..+.+.+..++...+.+|
T Consensus 253 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 253 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332 (354)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 222222 34556666677777888888888888875433222 24567788888888778888888888999
Q ss_pred hhcCCcchH
Q psy8267 417 LQTQPEAYT 425 (645)
Q Consensus 417 l~~~p~~~~ 425 (645)
....|+.+.
T Consensus 333 ~~~~~~~~~ 341 (354)
T 3nmw_A 333 MANRPAKYK 341 (354)
T ss_dssp HTTCCGGGC
T ss_pred HcCCHHHHh
Confidence 888887654
No 75
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.51 E-value=0.0048 Score=73.58 Aligned_cols=127 Identities=9% Similarity=-0.006 Sum_probs=67.9
Q ss_pred HHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC---Cc----cc----cHHHHH
Q psy8267 24 VKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI---RV----PM----IIPIVM 92 (645)
Q Consensus 24 vkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I---~~----~e----i~~~l~ 92 (645)
++...++|-+.|+-+.-+|..+- .+|+-.-.+..-+. .+.++.+|-.|+.++-+. ++ ++ +-+.++
T Consensus 13 l~~~~~~d~~~r~~A~~~L~~~~-~~p~~w~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll 88 (971)
T 2x1g_F 13 VVSFYRSNSQNQAITHEWLTDAE-ASPQAWQFSWQLMQ---LGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKIL 88 (971)
T ss_dssp HHHHHTSTTTC----CHHHHHTT-TSTHHHHHHHHHTC---TTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHH
Confidence 33445677778888888887754 45663222222222 267899998888887652 11 12 223333
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCC------ChhHHHHHHHHHHHHC
Q psy8267 93 LAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDK------TTLVVGSAVMAFEEVC 155 (645)
Q Consensus 93 ~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~------~~~V~~sav~~l~ei~ 155 (645)
..+.+... ..++||.+.+.++..+.+.+-..-+++++.+..++... ++..+-.++..+..++
T Consensus 89 ~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 156 (971)
T 2x1g_F 89 ESIVRFAG-GPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIP 156 (971)
T ss_dssp HHHHHHTT-SCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhH
Confidence 44433332 35899999999999998764223344555555566543 3445555555555443
No 76
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.40 E-value=0.0012 Score=67.97 Aligned_cols=140 Identities=12% Similarity=0.123 Sum_probs=110.1
Q ss_pred cchHHHHH-HhccCCchhHHHHHHHHHHhcccCchHH--HH---HHHHHHHHcC-CCCHHHHHHHHHHHhCCC--ccccH
Q psy8267 18 DLFPAVVK-NVVSKNIEVKKLVYVYLARYAEEQQDLA--LL---SISTFQRALK-DPNQLIRASALRVLSSIR--VPMII 88 (645)
Q Consensus 18 ~lf~~vvk-li~s~~~~~KkL~Yl~l~~~~~~~~dl~--lL---~iNsl~kDL~-~~N~~iralALr~ls~I~--~~ei~ 88 (645)
.+++-.++ ++.+++..+|.-+--++...+..+++.- ++ ++..|.+=|+ ++++.+|..|+.+||++. .+.-.
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~ 160 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL 160 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 36788899 9999999999999999998887766531 11 3445555565 468999999999999983 22222
Q ss_pred H-----HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 89 P-----IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 89 ~-----~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
+ ..++.+.+++.++++-||+.|+.++..+..-+|+.. .++++.+.++|.++++.|...|+.++..+...
T Consensus 161 ~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 161 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 1 245678888899999999999999999988888754 35788999999999999999999999877643
No 77
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.33 E-value=0.016 Score=63.24 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=82.3
Q ss_pred cCCChHHHHHHHHHHHhcCC-hH----HH---HHHHHHHHHHhCCC-h----hHHHHHHHHHHHHHh---hccc---ch-
Q psy8267 257 QSRNAAVVMAVAQLFHHLAP-RR----EV---AIIAKALVRLLRSS-R----EVQTVVLTTIASLAV---KRRA---LF- 316 (645)
Q Consensus 257 ~s~n~aVv~ea~~~i~~l~~-~~----~~---~~~~~~L~~lL~s~-~----niryv~L~~l~~l~~---~~p~---~~- 316 (645)
.+.+..+.-.|+.++++++. .. .+ ..+..+|+.+|.+. + +++.-+..+|..++. ..++ .+
T Consensus 297 ~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~ 376 (458)
T 3nmz_A 297 EVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 376 (458)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 44456666667777776653 11 12 12557788888532 2 366655555555553 2332 11
Q ss_pred h-hhhceEE-EcCCCChHHHHHHHHHHHHcc--CcCCHHHHHH-----HHHHhhccccHHHHHHHHHHHHHHHhhccccH
Q psy8267 317 V-PYLKSFY-VRSSDPTHVKTLKLELLTTLA--SETSIASILR-----EFQTYISSVDKAFVAATVQAIGKCAANIAQVT 387 (645)
Q Consensus 317 ~-~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~--~~~Nv~~Il~-----EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~ 387 (645)
+ .-+..+. .+.+.+..++..+...|..|+ +++|...|++ -|.+.+.+.+...++.+..++..++...|..+
T Consensus 377 ~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 377 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 1 1111222 345667789999999999998 4677776654 46677778899999999999999998766654
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.31 E-value=0.0031 Score=59.54 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=129.0
Q ss_pred cCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC--CccccHHHHHHHHHhhcCCCChHH
Q psy8267 29 SKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI--RVPMIIPIVMLAIKDSSLDMSPYV 106 (645)
Q Consensus 29 s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I--~~~ei~~~l~~~I~~~l~d~~pyV 106 (645)
|..+..-+=.-=++..++..+||+..=++..+.-+..=.+|-+|-.--.+|..| ..|++.+.+..++...+.|++.-=
T Consensus 81 sEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~D 160 (253)
T 2db0_A 81 SEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNRED 160 (253)
T ss_dssp CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHH
T ss_pred cccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHH
Confidence 455555444444566778889998888889999999888998886655566655 468888999999999999999776
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHH
Q psy8267 107 RKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILN 186 (645)
Q Consensus 107 RK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~ 186 (645)
|-.|..-+.-+..-.|..+..+.+++..||.|.|-.|.+||+-++.++...++. +.+.+..-+..+.|.++-.|-+.-.
T Consensus 161 kl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~e 239 (253)
T 2db0_A 161 KLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKE 239 (253)
T ss_dssp HHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 766666666676677777777889999999999999999999999998866665 5566666677788999999988888
Q ss_pred HHHHHH
Q psy8267 187 MLTRYA 192 (645)
Q Consensus 187 lL~~y~ 192 (645)
-|++..
T Consensus 240 gL~rl~ 245 (253)
T 2db0_A 240 GISRLL 245 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888775
No 79
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.24 E-value=0.11 Score=61.02 Aligned_cols=302 Identities=12% Similarity=0.033 Sum_probs=172.4
Q ss_pred CcccchHHHHHHhc---cCCchhHHHHHHHHHHhcccC-chHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHhCCCccc
Q psy8267 15 DASDLFPAVVKNVV---SKNIEVKKLVYVYLARYAEEQ-QDLALLSISTFQRALK-DP---NQLIRASALRVLSSIRVPM 86 (645)
Q Consensus 15 dvs~lf~~vvkli~---s~~~~~KkL~Yl~l~~~~~~~-~dl~lL~iNsl~kDL~-~~---N~~iralALr~ls~I~~~e 86 (645)
+...+...+-+.+. +++..+|-=+.+++....... .+..-+..+.+..+-. .. ++.+|..|.-.||-+..-.
T Consensus 389 ~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 389 NLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp CTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 45555555555555 556666766667776654433 2332234444443310 01 3778877777888753222
Q ss_pred cHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh--cCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHH
Q psy8267 87 IIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS--LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHK 164 (645)
Q Consensus 87 i~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~--~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~ 164 (645)
--+.+...++..+.|.++.+|..|++|+..+|- -+++.++.+... +++|.+..|...++.++.-+...+.+....
T Consensus 469 ~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~---~~e~~~e~vrR~aalgLGll~~g~~e~~~~ 545 (963)
T 4ady_A 469 ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTY---SQETQHGNITRGLAVGLALINYGRQELADD 545 (963)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTTTCGGGGHH
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHH---HhccCcHHHHHHHHHHHHhhhCCChHHHHH
Confidence 235666677888888889999999999998864 345555554443 446777778888888888777555443322
Q ss_pred HHHHHHHHhc-CCCchhHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccC
Q psy8267 165 SYRKLCNLLV-DVDEWGQVFILNMLT-RYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242 (645)
Q Consensus 165 ~~~kL~~~L~-~~~~W~Qv~iL~lL~-~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d 242 (645)
+++.|. +.+|+..--..-.+. .|+-+ . +
T Consensus 546 ----li~~L~~~~dp~vRygaa~alglAyaGT--------G--------------------------------------n 575 (963)
T 4ady_A 546 ----LITKMLASDESLLRYGGAFTIALAYAGT--------G--------------------------------------N 575 (963)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHTTTS--------C--------------------------------------C
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHHHHhcCC--------C--------------------------------------C
Confidence 344443 345544332222221 23210 0 1
Q ss_pred h-hHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHhhccc--chh
Q psy8267 243 P-DHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL--RSSREVQTVVLTTIASLAVKRRA--LFV 317 (645)
Q Consensus 243 ~-d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL--~s~~niryv~L~~l~~l~~~~p~--~~~ 317 (645)
+ -.+.+|. .+..+.+.-|.-.|+-.+.-+...+. ..+..++.+| +.++.+||-+--++..+..-+|. +++
T Consensus 576 ~~aIq~LL~---~~~~d~~d~VRraAViaLGlI~~g~~--e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 576 NSAVKRLLH---VAVSDSNDDVRRAAVIALGFVLLRDY--TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp HHHHHHHHH---HHHHCSCHHHHHHHHHHHHHHTSSSC--SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred HHHHHHHHH---HhccCCcHHHHHHHHHHHHhhccCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 1 1233333 33445566666555554433321111 2344455544 37799999999999988765553 332
Q ss_pred hhhceEEEcCCCChHHHHHHHHHHHHccCc---C---CHHHHHHHHHHhhcc--ccHHHHHHHHHHHH
Q psy8267 318 PYLKSFYVRSSDPTHVKTLKLELLTTLASE---T---SIASILREFQTYISS--VDKAFVAATVQAIG 377 (645)
Q Consensus 318 ~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~---~---Nv~~Il~EL~~yl~~--~d~~~~~~~i~~I~ 377 (645)
. +. ....|.+..||+-|+--|-.+.-. . -+..+++.|..|..+ .|..-+--++.+-|
T Consensus 651 ~-L~--~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 651 V-LD--PLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp H-HH--HHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred H-HH--HHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 1 10 023577789999998888776643 3 478888999988864 45443333333333
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.91 E-value=0.0044 Score=60.81 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=54.7
Q ss_pred cCCCCHHHHHHHHHHHhCC-----CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCch-hHHHHHHHHHHhhc
Q psy8267 64 LKDPNQLIRASALRVLSSI-----RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE-QKEELVLVIEKLLQ 137 (645)
Q Consensus 64 L~~~N~~iralALr~ls~I-----~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~-~~~~~~~~l~~lL~ 137 (645)
+.++|+-+---|+|+|..+ -+++-..-+..++...+.++++..+=-||-.+.++ .|- ..+...+.+.+|+.
T Consensus 84 lk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv~~~~~~V~~~l~sLl~ 160 (265)
T 3b2a_A 84 LSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QPLEDSKLVRTYINELVV 160 (265)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CBSCCCHHHHHHHHHHHT
T ss_pred HhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---CcccchHHHHHHHHHHHh
Confidence 4444554444455554443 11222233444444444455555555555555554 111 12334444455555
Q ss_pred CCChhHHHHHHHHHHHHChh--hhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy8267 138 DKTTLVVGSAVMAFEEVCPE--RIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYA 192 (645)
Q Consensus 138 D~~~~V~~sav~~l~ei~~~--~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~ 192 (645)
.+|+.|-++|+.+|.++... ..+.+...++.+-..|..-||..+-+.|..|.+..
T Consensus 161 Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 161 SPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp CSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 55555555555555555421 11122222333333344445555555555554443
No 81
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.91 E-value=0.21 Score=60.11 Aligned_cols=126 Identities=11% Similarity=0.097 Sum_probs=75.8
Q ss_pred HHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC---CccccHHHHHHHHH--
Q psy8267 22 AVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI---RVPMIIPIVMLAIK-- 96 (645)
Q Consensus 22 ~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I---~~~ei~~~l~~~I~-- 96 (645)
.+++.+.+++-..|+-+.-+|..+. .+|+....+..-+.+ +.++.+|-.|+.++-+. ++..+-+.--..|+
T Consensus 20 ~~l~~~~~p~~~~r~~Ae~~L~~~~-~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ 95 (1049)
T 3m1i_C 20 QVVSTFYQGSGVQQKQAQEILTKFQ-DNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNF 95 (1049)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH-HSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHH-hCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHH
Confidence 4455555677778888888887774 446643333333433 56899999888888653 33333333333332
Q ss_pred --hhcCC----C-----ChHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy8267 97 --DSSLD----M-----SPYVRKTAAHAIPKLYSL-DPEQKEELVLVIEKLLQDKTTLVVGSAVMAFE 152 (645)
Q Consensus 97 --~~l~d----~-----~pyVRK~Aalal~kl~~~-~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ 152 (645)
..+.+ + +++||.+.+.++..+.+. .|+.-+++++.+..+++ .++...-+++..+.
T Consensus 96 ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~ 162 (1049)
T 3m1i_C 96 VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLK 162 (1049)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHH
Confidence 23322 2 489999999999999876 46544556666677775 34433333343333
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.87 E-value=1.2 Score=52.66 Aligned_cols=124 Identities=10% Similarity=0.121 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHhCCCc------cccHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhh---cCchhHHHHHHHHHHhh
Q psy8267 67 PNQLIRASALRVLSSIRV------PMIIPIVMLAIKDSS-LDMSPYVRKTAAHAIPKLYS---LDPEQKEELVLVIEKLL 136 (645)
Q Consensus 67 ~N~~iralALr~ls~I~~------~ei~~~l~~~I~~~l-~d~~pyVRK~Aalal~kl~~---~~p~~~~~~~~~l~~lL 136 (645)
++...+-.|+.+++.|.. ....+.+++.+..+. .|++|.||.+|+.++.++.. .+|+..+...+.+.+.|
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l 555 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL 555 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 566788889999988743 234455555333333 26799999999999998765 34666777788888878
Q ss_pred cCCChhHHHHHHHHHHHHChhhhhhhHHH----HHHHHHHhcC--CCchhHHHHHHHHHHHHh
Q psy8267 137 QDKTTLVVGSAVMAFEEVCPERIDMIHKS----YRKLCNLLVD--VDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 137 ~D~~~~V~~sav~~l~ei~~~~~~li~~~----~~kL~~~L~~--~~~W~Qv~iL~lL~~y~r 193 (645)
| +.|..+|..++..+|.+....+.+. ..++.+.+.. .+.=.+..+++.+.....
T Consensus 556 -~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 556 -N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp -H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred -C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 4 7888999999988885433323333 3444555555 455667777877777653
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.63 E-value=0.14 Score=53.93 Aligned_cols=211 Identities=15% Similarity=0.059 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHhCCCcc-----ccH---HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhc-CchhH-----HHHHHHH
Q psy8267 67 PNQLIRASALRVLSSIRVP-----MII---PIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL-DPEQK-----EELVLVI 132 (645)
Q Consensus 67 ~N~~iralALr~ls~I~~~-----ei~---~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~-~p~~~-----~~~~~~l 132 (645)
.++.++-.|..+|.++... ..+ .-.++.+.+++.++++.||..|+-++..+-.. +++.. .+.++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 4577887887777776422 122 23478888999999999999999999988653 44422 2467788
Q ss_pred HHh-hcCCChhHHHHHHHHHHHHCh---h-hhhhh--HHHHHHHHHHhcCCC--ch--hHHHHHHHHHHHHhhhcCCCCC
Q psy8267 133 EKL-LQDKTTLVVGSAVMAFEEVCP---E-RIDMI--HKSYRKLCNLLVDVD--EW--GQVFILNMLTRYARTQFTDPNL 201 (645)
Q Consensus 133 ~~l-L~D~~~~V~~sav~~l~ei~~---~-~~~li--~~~~~kL~~~L~~~~--~W--~Qv~iL~lL~~y~r~~~~~P~~ 201 (645)
.++ +...++.+...|+.++..+.. + +..+. .+.+..|++.|...+ +| .+......|...+..-..++..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 886 566788888888888887764 2 22222 345667888886543 34 2333444444333100000100
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCC-hHH-
Q psy8267 202 NENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP-RRE- 279 (645)
Q Consensus 202 ~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~-~~~- 279 (645)
.+.+.+. -.+..+..+|++.+..+.-+|+.++.+++. ..+
T Consensus 256 -----------------------------------~~~i~~~---g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 297 (354)
T 3nmw_A 256 -----------------------------------RQILREN---NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 297 (354)
T ss_dssp -----------------------------------HHHHHTT---THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred -----------------------------------HHHHHHc---CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHH
Confidence 0001110 123444567788888999999999998873 222
Q ss_pred ---HH--HHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccc
Q psy8267 280 ---VA--IIAKALVRLLR-SSREVQTVVLTTIASLAVKRRAL 315 (645)
Q Consensus 280 ---~~--~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~ 315 (645)
+. .++++|+.+|. .++.+|-.+..+|..|+..+|..
T Consensus 298 ~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 298 QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 21 25688999996 67899999999999999877754
No 84
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.54 E-value=2.4 Score=51.72 Aligned_cols=138 Identities=9% Similarity=0.163 Sum_probs=81.7
Q ss_pred CCcccchHHHHHHh---ccC--CchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC---Ccc
Q psy8267 14 RDASDLFPAVVKNV---VSK--NIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI---RVP 85 (645)
Q Consensus 14 ~dvs~lf~~vvkli---~s~--~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I---~~~ 85 (645)
.++.....++.+++ .++ +-..|+-+.-+|..+.+ +||-...+.-.+. -.+.++.+|-.|+..+-+. ++.
T Consensus 4 ~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 4 DQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKE-KCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHh-CchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 44444444444443 344 66679989988888754 3443333333333 2567899999998777643 223
Q ss_pred ccHHHHH----HHHHhhcC-------CCChHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy8267 86 MIIPIVM----LAIKDSSL-------DMSPYVRKTAAHAIPKLYSLD-PEQKEELVLVIEKLLQDKTTLVVGSAVMAFEE 153 (645)
Q Consensus 86 ei~~~l~----~~I~~~l~-------d~~pyVRK~Aalal~kl~~~~-p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~e 153 (645)
.+-+.-- ..+.+.+. +..++||.+++.++..+.+.+ |+.-+++++.+..++.. ++...-.++..|..
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~ 159 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLR 159 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 3322222 22223322 257999999999999998764 65556666777777765 44444455555555
Q ss_pred HC
Q psy8267 154 VC 155 (645)
Q Consensus 154 i~ 155 (645)
++
T Consensus 160 L~ 161 (1204)
T 3a6p_A 160 LA 161 (1204)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 85
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.49 E-value=2.1 Score=50.48 Aligned_cols=322 Identities=13% Similarity=0.128 Sum_probs=176.2
Q ss_pred HHHHHHHHc----CCCCHHHHHHHHHHHhCCCc------cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh---cCc
Q psy8267 56 SISTFQRAL----KDPNQLIRASALRVLSSIRV------PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS---LDP 122 (645)
Q Consensus 56 ~iNsl~kDL----~~~N~~iralALr~ls~I~~------~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~---~~p 122 (645)
+.+.+..-+ .+++...+-.|+.+++.|.. ....+.+++.+. .+.+++|.||.+|+.++.++.+ .+|
T Consensus 446 ~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~ 524 (963)
T 2x19_B 446 LYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHP 524 (963)
T ss_dssp HHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCH
Confidence 344444545 56777788778888887642 234455555333 3455689999999999988765 356
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhh----hhHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHhhhc
Q psy8267 123 EQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERID----MIHKSYRKLCNLLVD--VDEWGQVFILNMLTRYARTQF 196 (645)
Q Consensus 123 ~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~----li~~~~~kL~~~L~~--~~~W~Qv~iL~lL~~y~r~~~ 196 (645)
+..+..++.+...|.| +.|...|..+|..+|.+..+ .+...+.+|.+.+.. .++=.+..+++.+......
T Consensus 525 ~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~-- 600 (963)
T 2x19_B 525 VMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA-- 600 (963)
T ss_dssp HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc--
Confidence 6666677777777866 88999999999888754222 233344555555553 3445566677777666521
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCC-Ch------HHHHHHHH
Q psy8267 197 TDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSR-NA------AVVMAVAQ 269 (645)
Q Consensus 197 ~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~-n~------aVv~ea~~ 269 (645)
-| . +. ..++ ++.-+..+........++. ++ ...++++.
T Consensus 601 -~~-~-~~-------------------------------~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 601 -LQ-V-EE-------------------------------ILKN-LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp -SC-H-HH-------------------------------HHHH-HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred -CC-H-HH-------------------------------HHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 01 0 00 0000 0100111111111111111 22 13345553
Q ss_pred HHH-hcCC---------------------h---HHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHhhcccchhhhhc
Q psy8267 270 LFH-HLAP---------------------R---REVAIIAKALVRLLR---SSREVQTVVLTTIASLAVKRRALFVPYLK 321 (645)
Q Consensus 270 ~i~-~l~~---------------------~---~~~~~~~~~L~~lL~---s~~niryv~L~~l~~l~~~~p~~~~~~~~ 321 (645)
.+. .++. . .....+.+.+.+++. .++.+.-.+.+.+..++...++-+.+++.
T Consensus 646 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~ 725 (963)
T 2x19_B 646 NLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVP 725 (963)
T ss_dssp HHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHH
T ss_pred HHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHH
Confidence 333 2221 0 123345555555553 45677777777777776655544444443
Q ss_pred eEE--E---cCCCChHHHHHHHHHHHHccC----cC----CHHHHHHHHHHhh----c-c--ccHHHHHHHHHHHHHHHh
Q psy8267 322 SFY--V---RSSDPTHVKTLKLELLTTLAS----ET----SIASILREFQTYI----S-S--VDKAFVAATVQAIGKCAA 381 (645)
Q Consensus 322 ~f~--~---l~~d~~~Ir~~kLdlL~~L~~----~~----Nv~~Il~EL~~yl----~-~--~d~~~~~~~i~~I~~la~ 381 (645)
.+. + ....+.. ..|.++..++. .. .+..+++.+...+ . + .+++.+.....-++.+..
T Consensus 726 ~~~~~l~~~~~~~~~~---~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~ 802 (963)
T 2x19_B 726 QLCEMLGRMYSTIPQA---SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALK 802 (963)
T ss_dssp HHHHHHHHHHHHSCCH---HHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcc---HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHH
Confidence 321 0 0111111 23444555543 22 2333444444322 1 1 358899999888888887
Q ss_pred hcccc-------HHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcC
Q psy8267 382 NIAQV-------TDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQ 420 (645)
Q Consensus 382 k~~~~-------~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~ 420 (645)
.+|.. ....++.++..++.....+...+...+.+++...
T Consensus 803 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 803 RKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp HCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred hCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 76532 5667777777777666667777788888888654
No 86
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.48 E-value=0.61 Score=46.64 Aligned_cols=125 Identities=10% Similarity=0.127 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhC---CCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHH
Q psy8267 70 LIRASALRVLSS---IRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGS 146 (645)
Q Consensus 70 ~iralALr~ls~---I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~s 146 (645)
..+...|+-.-. -+.+++.+.+.+.+.....|++..|||-.+--+...++.+|+.....++.|..+|+|+|+.|+-.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~ 109 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKR 109 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 366666665544 24688999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHChh-----------------hhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q psy8267 147 AVMAFEEVCPE-----------------RIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYART 194 (645)
Q Consensus 147 av~~l~ei~~~-----------------~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~ 194 (645)
++.+...+.|- -|+.+...=.++++.+...++=..+..++++.+....
T Consensus 110 ~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 110 VIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 87766554431 1222222223345554444555567788888887643
No 87
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.017 Score=51.39 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=58.8
Q ss_pred CcceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCc-ccCCC--CceEEEEeEEec
Q psy8267 519 GMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIA-SIDPG--LAVEVSLGLNLN 595 (645)
Q Consensus 519 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~~~~~~~~~~~ 595 (645)
| |.+.+.|.|.. +....+.++|+|++..+|++|++..- + |-+++++=.|.-. +|+|+ +.+++.+.|.-.
T Consensus 18 ~-l~I~~~~~~~~----~~~~~i~~~fsN~s~~~it~f~fqaA--V-PKs~kL~L~p~Sg~~L~p~~~~~itQ~~~I~n~ 89 (123)
T 3mnm_A 18 N-LKIEFEISRES----NSVIRIXSFFTNLSSSPISNLVFLLA--V-PKSMSLXLQPQSSNFMIGNAKDGISQEGTIENA 89 (123)
T ss_dssp S-EEEEEEEEECS----SSCEEEEEEEEECSSSCEEEEEEEEE--C-CTTSEEEECCCSCSCBCTTCTTCEEEEEEEESC
T ss_pred C-EEEEEEEEeCC----CCeEEEEEEEecCCCCccccEEEEEe--c-CcccEEEeECCCcCccCCCCCCCEEEEEEEecC
Confidence 5 88888888853 34678999999999999999999665 2 3467776444434 89998 678889988732
Q ss_pred C--CCCCC--ccEEeecc
Q psy8267 596 D--STQPL--SPRLVWGV 609 (645)
Q Consensus 596 ~--~~~~~--~~~~~~~~ 609 (645)
. ...+. +++++|.+
T Consensus 90 ~~~~~~~lklR~klsY~~ 107 (123)
T 3mnm_A 90 PANPSKALXVKWKVNYSV 107 (123)
T ss_dssp CCC---CCEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEEE
Confidence 2 23566 55668876
No 88
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=96.37 E-value=0.017 Score=51.20 Aligned_cols=84 Identities=14% Similarity=0.233 Sum_probs=59.1
Q ss_pred CcceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCc-ccCC--CCceEEEEeEEec
Q psy8267 519 GMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIA-SIDP--GLAVEVSLGLNLN 595 (645)
Q Consensus 519 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~--~~~~~~~~~~~~~ 595 (645)
| |.+.+.|.|..- +.....+.++|+|++..+|++|.+..- + |-+++++=.|.-. +|+| ++.+++.+.|. +
T Consensus 14 ~-l~I~~~~~~~~~--~~~~~~i~~~~~N~s~~~it~f~fqaA--V-PKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~-n 86 (122)
T 3zy7_A 14 G-LKIEFTFERSNT--NPSVTVITIQASNSTELDMTDFVFQAA--V-PKTFQLQLLSPSSSVVPAFNTGTITQVIKVL-N 86 (122)
T ss_dssp T-EEEEEEEECC------CEEEEEEEEEECSSSCBEEEEEEEE--C-CTTSEEEECCCSCSCBCGGGSCCEEEEEEEE-C
T ss_pred C-EEEEEEEEcCCC--CCCeEEEEEEEEECCCCccccEEEEEE--c-CcccEEEecCCCCCccCCCCCCCEEEEEEEE-C
Confidence 5 888888888431 234578999999999999999999665 2 3467766444333 7888 88899999887 3
Q ss_pred CCCCCC--ccEEeecc
Q psy8267 596 DSTQPL--SPRLVWGV 609 (645)
Q Consensus 596 ~~~~~~--~~~~~~~~ 609 (645)
....+. +++++|.+
T Consensus 87 ~~~~~lklR~klsY~~ 102 (122)
T 3zy7_A 87 PQKQQLRMRIKLTFNW 102 (122)
T ss_dssp TTCCCCCEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEE
Confidence 334566 55558876
No 89
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.26 E-value=0.38 Score=50.94 Aligned_cols=124 Identities=19% Similarity=0.181 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCC---CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHH
Q psy8267 71 IRASALRVLSSI---RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSA 147 (645)
Q Consensus 71 iralALr~ls~I---~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sa 147 (645)
.+...|+-+-.+ +.+++.+.+.+.|.....|++..|||-.+--|...+..+++.....++.|..||+|+|+.|+-.+
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~ 120 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKA 120 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 466666666554 56888899999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHChh-----------------hhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q psy8267 148 VMAFEEVCPE-----------------RIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYART 194 (645)
Q Consensus 148 v~~l~ei~~~-----------------~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~ 194 (645)
+.+...+.|- -|+.+...=..+++.+...++=..+..++++.+....
T Consensus 121 I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 121 ILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 7766655431 1322222223344444333444466777888877644
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.099 Score=52.61 Aligned_cols=169 Identities=11% Similarity=0.085 Sum_probs=110.8
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhcCchhH---------HHHHHHHHHhhcCCChhHHHHHHHHHHHHChhh------h
Q psy8267 95 IKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK---------EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER------I 159 (645)
Q Consensus 95 I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~---------~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~------~ 159 (645)
+..-+.|+++-.|+.|...+.+++...|... ..+.+.+.+.+.|.|..|+..++.++..++... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4567899999999999999999997654321 123456778899999999998888887665310 0
Q ss_pred ----hhhHHHHHHHHHH-hcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccc
Q psy8267 160 ----DMIHKSYRKLCNL-LVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNET 234 (645)
Q Consensus 160 ----~li~~~~~kL~~~-L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~ 234 (645)
......+..|+.. |.+..+-.....++.+..++... .|
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~--~~----------------------------------- 136 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD--TS----------------------------------- 136 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS--SS-----------------------------------
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc--Cc-----------------------------------
Confidence 1112223344443 55556655556677776665210 00
Q ss_pred cccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhc----CC-----hHHHHHHHHHHHHHhC-CChhHHHHHHHH
Q psy8267 235 SQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHL----AP-----RREVAIIAKALVRLLR-SSREVQTVVLTT 304 (645)
Q Consensus 235 ~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l----~~-----~~~~~~~~~~L~~lL~-s~~niryv~L~~ 304 (645)
...+++.+.+.+++.|+-|..+++..+..+ ++ ...+..+.+.+..++. ++++||-.+...
T Consensus 137 ----------~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l 206 (278)
T 4ffb_C 137 ----------ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNL 206 (278)
T ss_dssp ----------SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 012345556778999999999988766532 22 1234556677788885 789999999998
Q ss_pred HHHHHh
Q psy8267 305 IASLAV 310 (645)
Q Consensus 305 l~~l~~ 310 (645)
+..+..
T Consensus 207 ~~~ly~ 212 (278)
T 4ffb_C 207 IVEIYK 212 (278)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887754
No 91
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.91 E-value=0.53 Score=56.19 Aligned_cols=122 Identities=12% Similarity=0.047 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcccCchHHHH----HHH-HHHHHcC---CCCHHHHHHHHHHHhCCCcc------------ccHHHHHHH
Q psy8267 35 KKLVYVYLARYAEEQQDLALL----SIS-TFQRALK---DPNQLIRASALRVLSSIRVP------------MIIPIVMLA 94 (645)
Q Consensus 35 KkL~Yl~l~~~~~~~~dl~lL----~iN-sl~kDL~---~~N~~iralALr~ls~I~~~------------ei~~~l~~~ 94 (645)
|+++ ..+-.++--.+++.+- .+. .+++-+. +.+=..+-.||.+|+.++.- +..+.+++.
T Consensus 416 k~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~l 494 (980)
T 3ibv_A 416 KKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQI 494 (980)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHH
T ss_pred HHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Confidence 4455 5555555566776555 333 3344442 23346677888887765321 234566666
Q ss_pred HHhhcC-----CCChHHHHHHHHHHHHHhh---cCchhHHHHHHHHHH--hhcCCChhHHHHHHHHHHHHChh
Q psy8267 95 IKDSSL-----DMSPYVRKTAAHAIPKLYS---LDPEQKEELVLVIEK--LLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 95 I~~~l~-----d~~pyVRK~Aalal~kl~~---~~p~~~~~~~~~l~~--lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
+.+++. +++|.||..++.++.|..+ .+|+..+...+.+.+ .+.|+++.|..+|..+|..+|.+
T Consensus 495 l~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 495 LALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 666654 8899999999999999776 367777777777777 77789999999999999888754
No 92
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.89 E-value=2.8 Score=50.21 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=72.3
Q ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHhCCCcc-------ccHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHHh--
Q psy8267 55 LSISTFQRALK--DPNQLIRASALRVLSSIRVP-------MIIPIVMLAIKDSSL-----DMSPYVRKTAAHAIPKLY-- 118 (645)
Q Consensus 55 L~iNsl~kDL~--~~N~~iralALr~ls~I~~~-------ei~~~l~~~I~~~l~-----d~~pyVRK~Aalal~kl~-- 118 (645)
.+.+.+.+-+. +.+...+-.|+.++|+|... ...+.++..+..+.. |++|.||.+++.++.+..
T Consensus 451 ~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~ 530 (1049)
T 3m1i_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1049)
T ss_dssp HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Confidence 45566666665 35667888899999888542 234555555554332 467778878888887654
Q ss_pred -hcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 119 -SLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 119 -~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
..+|+..+..++.+.+.|.|.++.|..+|..+|..+|.+
T Consensus 531 ~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 531 LKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 346777777788888888899999999999998888754
No 93
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=95.77 E-value=0.051 Score=49.33 Aligned_cols=83 Identities=12% Similarity=0.188 Sum_probs=58.2
Q ss_pred ceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCc-ccCC--CCceEEEEeEEecCC
Q psy8267 521 LSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIA-SIDP--GLAVEVSLGLNLNDS 597 (645)
Q Consensus 521 l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~--~~~~~~~~~~~~~~~ 597 (645)
|.+.+.+.|.+. +.....+.++|+|++..+|++|.+..- + |-+++++-.|.=. +|+| ++.+++.+.|.-..
T Consensus 33 L~I~f~~~r~~~--~~~~~~i~~~f~N~s~~~it~f~fQaA--V-PKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~- 106 (140)
T 1gyu_A 33 LKIEFTFERSNT--NPSVTVITIQASNSTELDMTDFVFQAA--V-PKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ- 106 (140)
T ss_dssp EEEEEEEEECSS--CTTEEEEEEEEEECSSSCBEEEEEEEE--C-CTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTT-
T ss_pred EEEEEEEEcCCC--CCCEEEEEEEEEECCCCccccEEEEEE--c-CcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCC-
Confidence 777788777432 445578899999999999999999665 2 3467777444434 7888 44578888886443
Q ss_pred CCCC--ccEEeecc
Q psy8267 598 TQPL--SPRLVWGV 609 (645)
Q Consensus 598 ~~~~--~~~~~~~~ 609 (645)
..+. +++++|.+
T Consensus 107 ~~~l~LR~klsY~~ 120 (140)
T 1gyu_A 107 KQQLRMRIKLTYNH 120 (140)
T ss_dssp CCCCCEEEEEEEEE
T ss_pred CCCEEEEEEEEEEE
Confidence 3456 55558876
No 94
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=95.66 E-value=0.058 Score=49.35 Aligned_cols=83 Identities=12% Similarity=0.185 Sum_probs=58.4
Q ss_pred ceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCc-ccCC--CCceEEEEeEEecCC
Q psy8267 521 LSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIA-SIDP--GLAVEVSLGLNLNDS 597 (645)
Q Consensus 521 l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~--~~~~~~~~~~~~~~~ 597 (645)
+.+.+.+.|... +.....+..+|+|++..+|++|.+..- + |-+++++-.|.=. +++| ++.+++.+.|.-..
T Consensus 39 l~I~f~~~r~~~--~~~~~~i~~~f~N~s~~~it~f~fQaA--V-PK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~- 112 (146)
T 1iu1_A 39 LKIEFTFERSNT--NPSVTVITIQASNSTELDMTDFVFQAA--V-PKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQ- 112 (146)
T ss_dssp EEEEEEEEECSS--CTTEEEEEEEEEECSSSCBEEEEEEEE--C-CTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTT-
T ss_pred EEEEEEEEcCCC--CCCEEEEEEEEEeCCCCccccEEEEEE--c-CcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCC-
Confidence 778888877432 445578899999999999999999665 2 3467777444434 7888 44578888887443
Q ss_pred CCCC--ccEEeecc
Q psy8267 598 TQPL--SPRLVWGV 609 (645)
Q Consensus 598 ~~~~--~~~~~~~~ 609 (645)
..+. +++++|.+
T Consensus 113 ~~~lklR~klsY~~ 126 (146)
T 1iu1_A 113 KQQLRMRIKLTYNH 126 (146)
T ss_dssp CCCCCCEEEEEEEE
T ss_pred CCCEEEEEEEEEEE
Confidence 3456 55568976
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.52 E-value=1.2 Score=53.35 Aligned_cols=142 Identities=12% Similarity=0.051 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHcCC--CCHHHHHHHHHHHhCCCc-------cccHHHHHHHHHhhcC-----CCChHHHHHHHHHHHH
Q psy8267 51 DLALLSISTFQRALKD--PNQLIRASALRVLSSIRV-------PMIIPIVMLAIKDSSL-----DMSPYVRKTAAHAIPK 116 (645)
Q Consensus 51 dl~lL~iNsl~kDL~~--~N~~iralALr~ls~I~~-------~ei~~~l~~~I~~~l~-----d~~pyVRK~Aalal~k 116 (645)
|+.-...+.+.+-+.+ ++-..|-.|+=++|+|.. ...++.+++.+..+.. |+++.||.+++.++.+
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 5544566677776665 456777777777777632 2345567777777765 4778899999999987
Q ss_pred Hhh---cCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhh------------hhHHHHHHHHHHhcCCCchhH
Q psy8267 117 LYS---LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERID------------MIHKSYRKLCNLLVDVDEWGQ 181 (645)
Q Consensus 117 l~~---~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~------------li~~~~~kL~~~L~~~~~W~Q 181 (645)
.-+ .+|+..+..++.+.+.|.|++++|..+|..+|..+|.+..+ ++...+..+...+.+.++=..
T Consensus 527 y~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~ 606 (1023)
T 4hat_C 527 YPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQV 606 (1023)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHH
Confidence 654 57887788888888888899999999999999988865322 222223333344444555555
Q ss_pred HHHHHHHHHHH
Q psy8267 182 VFILNMLTRYA 192 (645)
Q Consensus 182 v~iL~lL~~y~ 192 (645)
..+.+.+....
T Consensus 607 ~~lyeai~~vi 617 (1023)
T 4hat_C 607 HTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666665
No 96
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.42 E-value=4.6 Score=45.42 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=108.8
Q ss_pred hccCCchhHHHHHHHHHHhcccCchH-----HHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccc---------------
Q psy8267 27 VVSKNIEVKKLVYVYLARYAEEQQDL-----ALLSISTFQRALKDPNQLIRASALRVLSSIRVPM--------------- 86 (645)
Q Consensus 27 i~s~~~~~KkL~Yl~l~~~~~~~~dl-----~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~e--------------- 86 (645)
-.++-++.||=.-+.+.-+++..++. +.-.++++++|-. |..+...+|-+|.++-.++
T Consensus 31 ~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~ 108 (651)
T 3grl_A 31 ASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQSED 108 (651)
T ss_dssp HHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--------------C
T ss_pred hhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccchH
Confidence 34788999999999999999887664 3467889999853 3344455888886642211
Q ss_pred ----cHHHH------HHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH-------HHHHHHHHHhhcCCChhHHHHHHH
Q psy8267 87 ----IIPIV------MLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-------EELVLVIEKLLQDKTTLVVGSAVM 149 (645)
Q Consensus 87 ----i~~~l------~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-------~~~~~~l~~lL~D~~~~V~~sav~ 149 (645)
+++.+ +..+..++...+.|||-.|+.++.-+..-.|+.. +.-++.|.++|+|+...+...|+.
T Consensus 109 ~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 12222 4566778899999999999999999998888832 356888999999998888888999
Q ss_pred HHHHHChhhhh---hh--HHHHHHHHHHhcC
Q psy8267 150 AFEEVCPERID---MI--HKSYRKLCNLLVD 175 (645)
Q Consensus 150 ~l~ei~~~~~~---li--~~~~~kL~~~L~~ 175 (645)
++.++.+++.+ ++ ...|.+|.+++..
T Consensus 189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 189 LLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 99999877653 22 2346777777654
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.13 Score=51.77 Aligned_cols=135 Identities=12% Similarity=0.065 Sum_probs=94.5
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhcccCc------h----HHHHHHHHH-HHHcCCCCHHHHHHHHHHHhCCCcc-ccH
Q psy8267 21 PAVVKNVVSKNIEVKKLVYVYLARYAEEQQ------D----LALLSISTF-QRALKDPNQLIRASALRVLSSIRVP-MII 88 (645)
Q Consensus 21 ~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~------d----l~lL~iNsl-~kDL~~~N~~iralALr~ls~I~~~-ei~ 88 (645)
.-.-+.+..+|..+-..+.-++..+++.-. . .+-.+++.+ .|-+.|+.+-+|..|+.++..+... .-.
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~ 137 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI 137 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH
Confidence 344566677888877777766666654211 1 122334444 4568899999999888877654322 123
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcC-ch------hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 89 PIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD-PE------QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 89 ~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~-p~------~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
+.+...+...+.+++|-||-.++..+.++++.. +. .++.+.+.+.++|+|.|+.|..+|..++.++.
T Consensus 138 ~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 556777888999999999999999999888642 22 12456667888999999999999999888774
No 98
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.23 E-value=0.069 Score=47.91 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=57.5
Q ss_pred CcceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCc-ccCCCC--ceEEEEeEEec
Q psy8267 519 GMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIA-SIDPGL--AVEVSLGLNLN 595 (645)
Q Consensus 519 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~~~ 595 (645)
| |.+.+.+.|... +.....+.++|+|++..+|++|.+..- + |-+++++-.|.=. .|+|++ .+++.+.|.-.
T Consensus 23 ~-l~I~f~~~~~~~--~~~~~~i~~~~~N~s~~~it~f~fQaA--V-PK~~kLqL~p~Sg~~l~p~~~~~ItQ~~~i~n~ 96 (131)
T 2e9g_A 23 G-VQLNLSFIRPPE--NPALLLITITATNFSEGDVTHFICQAA--V-PKSLQLQLQAPSGNTVPARGGLPITQLFRILNP 96 (131)
T ss_dssp S-EEEEEEEECCSS--CTTEEEEEEEEEECSSSCEEEEEEEEE--C-CTTSCCEECCCSCSEECTTTCCCBCCCEEEECT
T ss_pred C-EEEEEEEEcCCC--CCCeEEEEEEEEECCCCccccEEEEEE--c-CcccEEEeeCCCCCCcCCCCCCCEEEEEEEeCC
Confidence 5 888888887432 445578899999999999999999665 2 3366666444334 788844 46777877633
Q ss_pred CCCCCC--ccEEeecc
Q psy8267 596 DSTQPL--SPRLVWGV 609 (645)
Q Consensus 596 ~~~~~~--~~~~~~~~ 609 (645)
...+. +++++|.+
T Consensus 97 -~~~~l~lR~klsY~~ 111 (131)
T 2e9g_A 97 -NKAPLRLKLRLTYDH 111 (131)
T ss_dssp -TCCCCCEEEEEEEEC
T ss_pred -CCCCEEEEEEEEEEE
Confidence 33456 55568976
No 99
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.21 E-value=0.023 Score=56.67 Aligned_cols=184 Identities=20% Similarity=0.181 Sum_probs=114.0
Q ss_pred HcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChh
Q psy8267 63 ALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTL 142 (645)
Q Consensus 63 DL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~ 142 (645)
-+.|+++.+|..|.+.+. + ..+.+++.|+++.||..|+..+ .+ +.+..+++|+++.
T Consensus 58 ll~d~~~~VR~~AA~~l~----~-------~~l~~L~~D~~~~VR~~aA~~L------~~-------~~L~~ll~D~d~~ 113 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYSP----V-------EALTPLIRDSDEVVRRAVAYRL------PR-------EQLSALMFDEDRE 113 (244)
T ss_dssp GTTCSSHHHHHHHHTTSC----G-------GGGGGGTTCSSHHHHHHHHTTS------CS-------GGGGGTTTCSCHH
T ss_pred HhcCCCHHHHHHHHHhCC----H-------HHHHHHccCcCHHHHHHHHHHC------CH-------HHHHHHHcCCCHH
Confidence 358999999999999652 1 1257788999999999999763 22 2457889999999
Q ss_pred HHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy8267 143 VVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFY 222 (645)
Q Consensus 143 V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~ 222 (645)
|..+++..+ +.. . +...+.+.+++.+..+.+-+ |..
T Consensus 114 VR~~aA~~l----~~~--~-------L~~L~~D~d~~VR~~aA~~l----------~~~--------------------- 149 (244)
T 1lrv_A 114 VRITVADRL----PLE--Q-------LEQMAADRDYLVRAYVVQRI----------PPG--------------------- 149 (244)
T ss_dssp HHHHHHHHS----CTG--G-------GGGGTTCSSHHHHHHHHHHS----------CGG---------------------
T ss_pred HHHHHHHhC----CHH--H-------HHHHHcCCCHHHHHHHHHhc----------CHH---------------------
Confidence 998877643 211 1 23345677777766665410 100
Q ss_pred CCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHH
Q psy8267 223 DDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTVV 301 (645)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~ 301 (645)
.+..+++..++.|..+++.. +.+ ..+..++. .+++||..+
T Consensus 150 ----------------------------~l~~l~~D~d~~VR~~aa~~---l~~--------~ll~~ll~D~d~~VR~aa 190 (244)
T 1lrv_A 150 ----------------------------RLFRFMRDEDRQVRKLVAKR---LPE--------ESLGLMTQDPEPEVRRIV 190 (244)
T ss_dssp ----------------------------GGGGTTTCSCHHHHHHHHHH---SCG--------GGGGGSTTCSSHHHHHHH
T ss_pred ----------------------------HHHHHHcCCCHHHHHHHHHc---CCH--------HHHHHHHcCCCHHHHHHH
Confidence 01234556667777777654 221 22334554 567888888
Q ss_pred HHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHH
Q psy8267 302 LTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIG 377 (645)
Q Consensus 302 L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~ 377 (645)
...+ -+..+.. .+.|++..||..+.+-+- . +++..+.+.|..+|..+...+|
T Consensus 191 a~~l------~~~~L~~------Ll~D~d~~VR~~aa~~l~-----------~-~~L~~L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 191 ASRL------RGDDLLE------LLHDPDWTVRLAAVEHAS-----------L-EALRELDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHC------CGGGGGG------GGGCSSHHHHHHHHHHSC-----------H-HHHHHCCCCCHHHHHHHHCCC-
T ss_pred HHhC------CHHHHHH------HHcCCCHHHHHHHHHcCC-----------H-HHHHHccCCCHHHHHHHHHHhC
Confidence 7753 1222221 246777888888777542 1 3333447778888877766554
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.19 E-value=0.11 Score=51.21 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=89.4
Q ss_pred CCcccchHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHH-HcCCCCHHHHHHHHHHHhCCC---ccccHH
Q psy8267 14 RDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQR-ALKDPNQLIRASALRVLSSIR---VPMIIP 89 (645)
Q Consensus 14 ~dvs~lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~k-DL~~~N~~iralALr~ls~I~---~~ei~~ 89 (645)
.|....+.-+-.+..++.+++|-++--.+... ...++ .| ..++. =-.|++=-||-.+-.+++.+. .++-
T Consensus 67 ~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~--~L--~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 67 NDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE--IL--IFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH--HH--HHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred CCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH--HH--HHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 34555566666777777787776654444444 33332 22 23333 245788777755444444432 3442
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHH-----hhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhh
Q psy8267 90 IVMLAIKDSSLDMSPYVRKTAAHAIPKL-----YSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMI 162 (645)
Q Consensus 90 ~l~~~I~~~l~d~~pyVRK~Aalal~kl-----~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li 162 (645)
+.+.+.+.+.|+++.|||.|+.++..- ++.+| +.+.+.|..+..|++-.|.-|...++.++..++++..
T Consensus 140 -~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp---~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 140 -ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENP---NEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp -THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCH---HHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCH---HHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 334457889999999999999997431 12333 4468888999999999999999999999987666544
No 101
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.47 E-value=11 Score=44.90 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=68.3
Q ss_pred cCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC----CCcc-------ccHHHHHHHHHh
Q psy8267 29 SKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS----IRVP-------MIIPIVMLAIKD 97 (645)
Q Consensus 29 s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~----I~~~-------ei~~~l~~~I~~ 97 (645)
+.+.+.|+-.+-++..+-+. ||---.+..-+. .-...++.+|-.|+.+|-+ +... .+-+.++..+.+
T Consensus 19 ~sd~~~r~~A~~~L~~~q~s-p~aw~~~~~iL~-~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~ 96 (980)
T 3ibv_A 19 SVGPIIKQQATDFIGSLRSS-STGWKICHEIFS-EKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKE 96 (980)
T ss_dssp TSCHHHHHHHHHHHHHHHHS-TTHHHHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-hhHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH
Confidence 34788999999999887654 663333332222 1111279999999888764 2222 122233444433
Q ss_pred hc-CCCChHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHhhcCCCh
Q psy8267 98 SS-LDMSPYVRKTAAHAIPKLYSL-DPEQKEELVLVIEKLLQDKTT 141 (645)
Q Consensus 98 ~l-~d~~pyVRK~Aalal~kl~~~-~p~~~~~~~~~l~~lL~D~~~ 141 (645)
.. .+..++||.|.+.++..++.. .|+.-+++++.+..++...++
T Consensus 97 ~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~ 142 (980)
T 3ibv_A 97 LSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQ 142 (980)
T ss_dssp CCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCC
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCCh
Confidence 21 134789999999999999875 566556666666777765443
No 102
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.40 E-value=0.34 Score=58.35 Aligned_cols=126 Identities=13% Similarity=0.064 Sum_probs=90.3
Q ss_pred CchhHHHHHHHHHHhcc--------cCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhh---c
Q psy8267 31 NIEVKKLVYVYLARYAE--------EQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDS---S 99 (645)
Q Consensus 31 ~~~~KkL~Yl~l~~~~~--------~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~---l 99 (645)
+..+++.++|++..+.+ ..++..--..+.+.+.+...++.-+-++|++|||++.++.++.+.+.+... -
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~ 487 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSL 487 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCC
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCccccc
Confidence 45577778887765433 123444456667777777788999999999999999999877664433211 1
Q ss_pred CCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhc--CCChhHHHHHHHHHHHHChhhh
Q psy8267 100 LDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQ--DKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 100 ~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~--D~~~~V~~sav~~l~ei~~~~~ 159 (645)
.+....||..|+.|+.++-..+|+.+ .+.+.++.. +.++.|..+|+..+.+.+|...
T Consensus 488 ~~~~~rvr~aAi~ALr~~~~~~p~~v---~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~ 546 (1056)
T 1lsh_A 488 DEYSTRVQAEAIMALRNIAKRDPRKV---QEIVLPIFLNVAIKSELRIRSCIVFFESKPSVA 546 (1056)
T ss_dssp CCSCHHHHHHHHHTTTTGGGTCHHHH---HHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHH
T ss_pred cccchHHHHHHHHHHHHhhhhchHHH---HHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHH
Confidence 22356899999999999987777654 345566664 4789999999999998888654
No 103
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=94.39 E-value=0.26 Score=45.32 Aligned_cols=85 Identities=14% Similarity=0.239 Sum_probs=56.5
Q ss_pred ceeeEeecccccccCCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCc-ccCCCC------ceEEEEeEE
Q psy8267 521 LSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIA-SIDPGL------AVEVSLGLN 593 (645)
Q Consensus 521 l~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~------~~~~~~~~~ 593 (645)
+.+.+.|.|..---+.+...+..+|+|++..+|++|.+..- + |-+++++-.|.=. +|+|++ .+++.+.+.
T Consensus 37 l~I~f~~~~~~~p~~~~~~~i~~~~~N~s~~~is~f~fQaA--V-PK~~kLqL~ppSg~~L~p~~~~~~~~~ItQ~m~v~ 113 (153)
T 1p4u_A 37 FRILFHFAKECPPGRPDVLVVVVSMLNMAPLPVKSIVLQAA--A-PKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLA 113 (153)
T ss_dssp EEEEEEEBSSCCTTCTTEEEEEEEEEECSSSCBEEEEEEEE--C-BTTSEEEECCCSCSCBCCCBTTBCCCEEEEEEEEE
T ss_pred EEEEEEEEecCCCCCCCeEEEEEEEEeCCCCccccEEEEEE--c-CcccEEEeeCCCCCccCCCCcCCCCCCEEEEEEEe
Confidence 77888887731111344567789999999999999999665 2 3366666444333 676655 378888886
Q ss_pred ecCCCCCC--ccEEeecc
Q psy8267 594 LNDSTQPL--SPRLVWGV 609 (645)
Q Consensus 594 ~~~~~~~~--~~~~~~~~ 609 (645)
-. ...+. +++++|.+
T Consensus 114 n~-~~~~l~LR~klsY~~ 130 (153)
T 1p4u_A 114 NP-LKEKVRLRYKLTFAL 130 (153)
T ss_dssp CT-TCCCCCEEEEEEEEE
T ss_pred CC-CCCCEEEEEEEEEEE
Confidence 43 33566 55558976
No 104
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.71 E-value=2.3 Score=50.44 Aligned_cols=209 Identities=14% Similarity=0.175 Sum_probs=138.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHH---HHHhCCCccccHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhcCchhH----HH
Q psy8267 56 SISTFQRALKDPNQLIRASAL---RVLSSIRVPMIIPIVMLAIKDSSLDM-SPYVRKTAAHAIPKLYSLDPEQK----EE 127 (645)
Q Consensus 56 ~iNsl~kDL~~~N~~iralAL---r~ls~I~~~ei~~~l~~~I~~~l~d~-~pyVRK~Aalal~kl~~~~p~~~----~~ 127 (645)
..+.+..-+.|.+..+|..|- .++...-.++-+..+.+.+.+.+.+. .+-.|-.|.-++-++-...|+++ ++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 457778888999999997655 44555566766788999999999766 67888888888888888889875 78
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHCh--hhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCC
Q psy8267 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCP--ERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNEND 205 (645)
Q Consensus 128 ~~~~l~~lL~D~~~~V~~sav~~l~ei~~--~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~ 205 (645)
++|.+..++-|..+.|-.+|..++..+|. ++.+ +.+.+..|++.+.++++ .-..++.|. .+
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~--~~~~~~~l~---~~----------- 238 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE--VPETVHLLG---AT----------- 238 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH--HHHHHHHHT---TC-----------
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh--hHHHHHHhh---cC-----------
Confidence 99999999999999999999999999884 3333 34457778999988876 233344442 11
Q ss_pred CCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhc----CChHHHH
Q psy8267 206 SSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHL----APRREVA 281 (645)
Q Consensus 206 s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l----~~~~~~~ 281 (645)
.|+..- -.|.+-.+..-+..-|..+..++--.++-.+-++ ..+....
T Consensus 239 --------------tfv~~v---------------~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~ 289 (986)
T 2iw3_A 239 --------------TFVAEV---------------TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIA 289 (986)
T ss_dssp --------------CCCSCC---------------CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred --------------eeEeee---------------cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHh
Confidence 122110 0233444433333334456666665554444333 2222222
Q ss_pred ----HHHHHHHHHhC--CChhHHHHHHHHHHHHHh
Q psy8267 282 ----IIAKALVRLLR--SSREVQTVVLTTIASLAV 310 (645)
Q Consensus 282 ----~~~~~L~~lL~--s~~niryv~L~~l~~l~~ 310 (645)
.+.+.+-+-.. ++||+|-++-+++..|..
T Consensus 290 ~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 290 PFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 33344445453 789999999888888754
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.68 E-value=2.1 Score=46.31 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHHHHHHhhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHH
Q psy8267 293 SSREVQTVVLTTIASLAVKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAA 371 (645)
Q Consensus 293 s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~ 371 (645)
.+...+-++-+.|.+.-...|++-+.-+...+ +..|+|..||..++.=|..+|..+++..|.+=|...+...|..=...
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~ 119 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFNL 119 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHHHHH
Confidence 33445555555555555555554433333333 44678899999999999999999999999999999888766443333
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcC------CcchHHHHHHHHHhhccCCh
Q psy8267 372 TVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQ------PEAYTDIIRHMVRLSDSITV 440 (645)
Q Consensus 372 ~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~------p~~~~~~i~~L~~~l~~i~~ 440 (645)
+=+++-.+-. .+....+..+...+..+++.+...++..|+.-+..- ++....++..+.+.++++..
T Consensus 120 V~~sL~sllk---~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 120 VNNALLSIFK---MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHHH---HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHHh---cChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 3233333322 233445566666666666667766666665544431 23344555666666666543
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.08 E-value=0.2 Score=49.53 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=69.8
Q ss_pred HHHHHHHcCCCCH--HHHHHHHHHHhCCCc--cc----cHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhH--
Q psy8267 57 ISTFQRALKDPNQ--LIRASALRVLSSIRV--PM----IIP-IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-- 125 (645)
Q Consensus 57 iNsl~kDL~~~N~--~iralALr~ls~I~~--~e----i~~-~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-- 125 (645)
+-.+.+-|.++++ .++..|..++.++.. ++ +++ -.++.+.++|.++++.||..|+-|+..+-..+++..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455566666666 666555555555431 11 111 135778889999999999999999999977667643
Q ss_pred ---HHHHHHHHHhhc-CCChhHHHHHHHHHHHHC
Q psy8267 126 ---EELVLVIEKLLQ-DKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 126 ---~~~~~~l~~lL~-D~~~~V~~sav~~l~ei~ 155 (645)
.+.++.+.++|. ..+..+.-.|+.++..+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 356888899997 478888888988888775
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.01 E-value=2.3 Score=41.79 Aligned_cols=155 Identities=12% Similarity=-0.008 Sum_probs=101.3
Q ss_pred CCCChHHHHHHHHHHHHccCcCCHHHHHHHHHH-hhccccHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHhhccCChh
Q psy8267 327 SSDPTHVKTLKLELLTTLASETSIASILREFQT-YISSVDKAFVAATVQAIGKCAA-NIAQVTDTCLTGLVSLLSYSDEA 404 (645)
Q Consensus 327 ~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~-yl~~~d~~~~~~~i~~I~~la~-k~~~~~~~~v~~ll~LL~~~~~~ 404 (645)
.++--++|..+.++|..+ + ....++.-+.. ...+..-.++.-+..+++.++. ..|+. .+..+.....+.+..
T Consensus 81 ~~~~deVR~~Av~lLg~~-~--~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~ 154 (240)
T 3l9t_A 81 QSDVYQVRMYAVFLFGYL-S--KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLH 154 (240)
T ss_dssp TCSSHHHHHHHHHHHHHT-T--TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHH
T ss_pred hCcchHHHHHHHHHHHhc-c--CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHH
Confidence 344468999999988887 3 33778888887 5556666777777888888886 56653 456677778888888
Q ss_pred hHHHHHHHHHHHhhc-CCcchHHHHHHHHHhhccCChHHHHHHHHHHHhcccccCCCchHHHHHHHHHhhcCCchHHHHH
Q psy8267 405 VVAESVVVIKNLLQT-QPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQ 483 (645)
Q Consensus 405 v~~e~v~~i~~il~~-~p~~~~~~i~~L~~~l~~i~~~~ak~~~iwilGEy~~~i~~~~~diLr~l~~~f~~e~~~vk~~ 483 (645)
|..-++...+--... .+......+..+++.+..-.+--++.+++|-|.+|+.. -||..+.+++++..++++++..
T Consensus 155 VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~----~Pd~V~~~~~~w~~~~~~~~~i 230 (240)
T 3l9t_A 155 TRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK----FPDLVKIELKNWKLESKEINQV 230 (240)
T ss_dssp HHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh----CHHHHHHHHHHhhccCHhHHHH
Confidence 877776654321111 11111122223333333334456899999999999874 6888888888888888877643
Q ss_pred HHHhhhhhcccCC
Q psy8267 484 VLNLAPVEAAGIT 496 (645)
Q Consensus 484 iL~~~~~~a~~y~ 496 (645)
+ ++|.+|+
T Consensus 231 ~-----k~A~k~l 238 (240)
T 3l9t_A 231 Y-----KLASKFI 238 (240)
T ss_dssp H-----HHHTTTC
T ss_pred H-----HHHHhhc
Confidence 3 4455554
No 108
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.00 E-value=1.2 Score=44.58 Aligned_cols=160 Identities=9% Similarity=0.066 Sum_probs=99.0
Q ss_pred CCChhHHHHHHHHHHHHHhhcccchhhhhceEE----E-cCCCChHHHHHHHHHHHHccC----------cCCHHHHHHH
Q psy8267 292 RSSREVQTVVLTTIASLAVKRRALFVPYLKSFY----V-RSSDPTHVKTLKLELLTTLAS----------ETSIASILRE 356 (645)
Q Consensus 292 ~s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~----~-l~~d~~~Ir~~kLdlL~~L~~----------~~Nv~~Il~E 356 (645)
+++..-+.-|++.|.......|+.+...+..+| . ..+....+-.+.|++|..+.+ +.-+..++.-
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~ 136 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPY 136 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 444555555666666655555543222221111 0 124456788888888877642 1114566777
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHH---HHHHH
Q psy8267 357 FQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDII---RHMVR 433 (645)
Q Consensus 357 L~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i---~~L~~ 433 (645)
|.+=+.++...+|..+-..+..+..-+|+ +..++.+++-+.+.+.....|+...+..++..+.-.....+ +.+++
T Consensus 137 LveKlGd~k~~vR~~~r~il~~l~~v~~~--~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ 214 (266)
T 2of3_A 137 LLLKTGEAKDNMRTSVRDIVNVLSDVVGP--LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAP 214 (266)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHH
Confidence 77777777777877776666666654433 34556666667777777888888888888876643344567 77888
Q ss_pred hhccCChHHHHHHHHHHHhcc
Q psy8267 434 LSDSITVPTARAAILWLLGEY 454 (645)
Q Consensus 434 ~l~~i~~~~ak~~~iwilGEy 454 (645)
++.+ .++.+|.+++=++.|-
T Consensus 215 ll~D-~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 215 FVGD-KDVNVRNAAINVLVAC 234 (266)
T ss_dssp GGGC-SSHHHHHHHHHHHHHH
T ss_pred HHcC-CCHHHHHHHHHHHHHH
Confidence 8876 4567776666666663
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.94 E-value=1.5 Score=47.34 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=93.2
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhh
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDS 98 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~ 98 (645)
-|-.++.... .+..+|||+--.+.+|+..=|++.--++|++..-+.|.+.-||..|+|.|..++..+.+.-+..-+-++
T Consensus 30 ~y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~Ql 108 (507)
T 3u0r_A 30 AYQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQL 108 (507)
T ss_dssp HHHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHH
Confidence 3556666444 468999999999999999999999999999887778999999999999999998878888899999999
Q ss_pred cCCCChHHHHHHHHHHHHHhhcCchh-HHHHHHHHHH
Q psy8267 99 SLDMSPYVRKTAAHAIPKLYSLDPEQ-KEELVLVIEK 134 (645)
Q Consensus 99 l~d~~pyVRK~Aalal~kl~~~~p~~-~~~~~~~l~~ 134 (645)
++..++--+...=.++..+++.||.. ...++..|.+
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~ 145 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ 145 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc
Confidence 98888877777777788888888864 3444444443
No 110
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.56 E-value=1.7 Score=48.03 Aligned_cols=235 Identities=15% Similarity=0.096 Sum_probs=138.6
Q ss_pred chHHHHHHhccCCchhHHHHHHHHHHhccc-----------CchHHHHHHHHHHHH----cCCCC--HHHHHHHHHHHhC
Q psy8267 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEE-----------QQDLALLSISTFQRA----LKDPN--QLIRASALRVLSS 81 (645)
Q Consensus 19 lf~~vvkli~s~~~~~KkL~Yl~l~~~~~~-----------~~dl~lL~iNsl~kD----L~~~N--~~iralALr~ls~ 81 (645)
++-..+..+-+++-+.|.=+-+++...... +.|++.-.+=-|.-| .-+.. --||-.|-++||.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 333344445577777777777777655432 336554222223222 22222 2355444444444
Q ss_pred C--CccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhh
Q psy8267 82 I--RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159 (645)
Q Consensus 82 I--~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~ 159 (645)
+ ..++ .+.+.. +.+.+..+.+-||-.+.+++-=+-..-.+ .+...+.+...|.|.|.-|.+.|+.++..+. ++
T Consensus 255 L~hLp~e-~~IL~q-LV~~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p 329 (800)
T 3oc3_A 255 IYPLIGP-NDIIEQ-LVGFLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--IT 329 (800)
T ss_dssp HTTTSCS-CCHHHH-HTTGGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CS
T ss_pred HHhCChh-HHHHHH-HHhhcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--ch
Confidence 3 1122 222222 22455778899999999887655222122 5777888889999999999999999888877 33
Q ss_pred hhhHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCccccccccccccc
Q psy8267 160 DMIHKSYRKLCNLLVDVDEW--GQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQV 237 (645)
Q Consensus 160 ~li~~~~~kL~~~L~~~~~W--~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~ 237 (645)
+.+...+..+.+.|.+.|.- ....++++|...+.. |....
T Consensus 330 ~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~----p~~a~---------------------------------- 371 (800)
T 3oc3_A 330 DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRE----NPELS---------------------------------- 371 (800)
T ss_dssp STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHH----CTTCC----------------------------------
T ss_pred hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcC----Ccccc----------------------------------
Confidence 33444455555555544332 356788999887754 42100
Q ss_pred ccccChhHHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CCChhHHHHHHHHH
Q psy8267 238 STELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RSSREVQTVVLTTI 305 (645)
Q Consensus 238 ~~~~d~d~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s~~niryv~L~~l 305 (645)
.++ .++.++-|++.|.-++|..++.+++..+.....++ -....+| ..+.+++-++++.-
T Consensus 372 ---~dp---~LVPRL~PFLRHtITSVR~AVL~TL~tfL~~~~LR---LIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 372 ---IPP---ERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDF---LVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp ---CCS---GGGGGTGGGGTCSSHHHHHHHHHHTTTCCCHHHHH---HHHHHHHHCSCHHHHHHHHHHH
T ss_pred ---cCh---HHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhHHH---HHHHHHHhCCcHHHHHHHHHHH
Confidence 011 25677789999999999999999987765322222 2223333 56677887777755
No 111
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=92.53 E-value=22 Score=42.45 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=85.1
Q ss_pred HHHHHHhCCCccccHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHhh-cCch----hHHHHHHHHHHhhc-----CCCh
Q psy8267 74 SALRVLSSIRVPMIIPIVMLAIKDSSLD--MSPYVRKTAAHAIPKLYS-LDPE----QKEELVLVIEKLLQ-----DKTT 141 (645)
Q Consensus 74 lALr~ls~I~~~ei~~~l~~~I~~~l~d--~~pyVRK~Aalal~kl~~-~~p~----~~~~~~~~l~~lL~-----D~~~ 141 (645)
-.|-.++++...++.+.+.+.+.+.+.+ .++..|=+|+.|+..+-. .+++ .+++.++.|..++. |..+
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~ 514 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKA 514 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchH
Confidence 5677888888889999999999888765 589999999999999765 3333 23566777777776 3444
Q ss_pred hHHHHHHHHHHHHC---hhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 142 LVVGSAVMAFEEVC---PERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 142 ~V~~sav~~l~ei~---~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
.|..+++.++...+ ..+++++.+.+.+|.+.+.+.+|=.|...-..|.+.+.
T Consensus 515 ~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 515 VVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 44445545554433 34567788888889998887777667666666666653
No 112
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.29 E-value=23 Score=42.02 Aligned_cols=286 Identities=12% Similarity=0.195 Sum_probs=168.3
Q ss_pred cCCchhHHHHHHHHHHhccc--CchHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhCCC--ccccHHHH---HHHHHhhcC
Q psy8267 29 SKNIEVKKLVYVYLARYAEE--QQDLALLSISTFQRALKDPNQL-IRASALRVLSSIR--VPMIIPIV---MLAIKDSSL 100 (645)
Q Consensus 29 s~~~~~KkL~Yl~l~~~~~~--~~dl~lL~iNsl~kDL~~~N~~-iralALr~ls~I~--~~ei~~~l---~~~I~~~l~ 100 (645)
++.-+.|.-.+-....+... ..++..=+...+.|.+.+.+.- --+.|+..|+.-- .+.+-+.+ .+.+..+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 105 (986)
T 2iw3_A 26 ATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAG 105 (986)
T ss_dssp CCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhc
Confidence 33344455565555544432 2222234667888999886443 3346677777432 22333443 588889999
Q ss_pred CCChHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHC---hhhhh-hhHHHHHHHHHHhc
Q psy8267 101 DMSPYVRKTAAHAIPKLYS-LDPEQKEELVLVIEKLLQDKT-TLVVGSAVMAFEEVC---PERID-MIHKSYRKLCNLLV 174 (645)
Q Consensus 101 d~~pyVRK~Aalal~kl~~-~~p~~~~~~~~~l~~lL~D~~-~~V~~sav~~l~ei~---~~~~~-li~~~~~kL~~~L~ 174 (645)
|+.+-||+.|..|+.-+++ ..|+.+..+.+.|.+.|.+.. =..-.+|+.++..+. |+... .+...+.-+...+.
T Consensus 106 dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 185 (986)
T 2iw3_A 106 NKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW 185 (986)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcc
Confidence 9999999999999888887 567777888888888886653 334445666665554 44332 22333444555666
Q ss_pred CCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChhHHHHHHhhhh
Q psy8267 175 DVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKP 254 (645)
Q Consensus 175 ~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d~~~ll~~~~~ 254 (645)
|.-+=.+....+.+..+|.. .+ +.|...++..+..
T Consensus 186 d~k~~v~~~~~~~~~~~~~~--~~-------------------------------------------n~d~~~~~~~~~~ 220 (986)
T 2iw3_A 186 DTKKEVKAAATAAMTKATET--VD-------------------------------------------NKDIERFIPSLIQ 220 (986)
T ss_dssp CSSHHHHHHHHHHHHHHGGG--CC-------------------------------------------CTTTGGGHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhc--CC-------------------------------------------CcchhhhHHHHHH
Confidence 66665666677777777732 00 0111112222222
Q ss_pred hhcCCChHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHhC-CChhHH---HHHHHHHHHHHhhcccchhhhhceEE-
Q psy8267 255 LLQSRNAAVVMAVAQLFHHLA-----PRREVAIIAKALVRLLR-SSREVQ---TVVLTTIASLAVKRRALFVPYLKSFY- 324 (645)
Q Consensus 255 ll~s~n~aVv~ea~~~i~~l~-----~~~~~~~~~~~L~~lL~-s~~nir---yv~L~~l~~l~~~~p~~~~~~~~~f~- 324 (645)
.+. ++.-+-||+..+.... ....+..+++.|.|=|+ +.+.++ -++.++|.+|+. +|....+++....
T Consensus 221 ~~~--~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~-~~~~~~~f~~~l~p 297 (986)
T 2iw3_A 221 CIA--DPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE-DPQVIAPFLGKLLP 297 (986)
T ss_dssp HHH--CTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC-CHHHHHHHHTTTHH
T ss_pred Hhc--ChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC-CHHHHhhhhhhhhh
Confidence 233 3444778877665432 22456777888888775 444443 567788888875 6766566555443
Q ss_pred -E-----cCCCC--hHHHHHHHHHHHHccCc------------CCHHHHHHHHHHhhc
Q psy8267 325 -V-----RSSDP--THVKTLKLELLTTLASE------------TSIASILREFQTYIS 362 (645)
Q Consensus 325 -~-----l~~d~--~~Ir~~kLdlL~~L~~~------------~Nv~~Il~EL~~yl~ 362 (645)
+ .-.|| ..+-.++++.|....+. ..+..+...+.+-+.
T Consensus 298 ~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (986)
T 2iw3_A 298 GLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLK 355 (986)
T ss_dssp HHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhc
Confidence 1 12455 56677888988776554 235556555555443
No 113
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=92.09 E-value=18 Score=40.55 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q psy8267 164 KSYRKLCNLLVDVDEWGQVFILNMLTRYART 194 (645)
Q Consensus 164 ~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~ 194 (645)
.++.-|++.|...+.|.....+++|+..+..
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~ 152 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ 152 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhc
Confidence 3455677777777777777777766666543
No 114
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.72 E-value=0.7 Score=46.41 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH---HhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHH
Q psy8267 53 ALLSISTFQRALKDPNQLIRASALRV---LSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129 (645)
Q Consensus 53 ~lL~iNsl~kDL~~~N~~iralALr~---ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~ 129 (645)
+-..+..+.-=+.|+++-+|..+-.. ++.+..+ ..+.+.+.+++.++++.+|--.+..+..++..+.-......
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l 206 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSL 206 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGG
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 34455677777899999999876544 4444333 23667778899999999999999999888875322222345
Q ss_pred ---HHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 130 ---LVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 130 ---~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
+.+.++++|+|..|..+|+.++.++...
T Consensus 207 ~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 207 SVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999888643
No 115
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.77 E-value=17 Score=43.51 Aligned_cols=138 Identities=7% Similarity=0.041 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCCC--HHHH---HHHHHHHh-CCCc---cccHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHHh--
Q psy8267 55 LSISTFQRALKDPN--QLIR---ASALRVLS-SIRV---PMIIPIVMLAIKDSSLDM-----SPYVRKTAAHAIPKLY-- 118 (645)
Q Consensus 55 L~iNsl~kDL~~~N--~~ir---alALr~ls-~I~~---~ei~~~l~~~I~~~l~d~-----~pyVRK~Aalal~kl~-- 118 (645)
.....+++-+.+++ -..+ +.|+++|+ ++.. ....+.+++.+..+..++ .+-||......+.+.-
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w 556 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF 556 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence 34445665554432 2222 57777774 3332 245677777777666554 4566666666766543
Q ss_pred -hcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhh------------hhHHHHHHHHHHhcCCCchhHHHHH
Q psy8267 119 -SLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERID------------MIHKSYRKLCNLLVDVDEWGQVFIL 185 (645)
Q Consensus 119 -~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~------------li~~~~~kL~~~L~~~~~W~Qv~iL 185 (645)
+.+|+..+..+..|.+.+.|.+++|..+|+.+|..+|.+... ++...++.+-....+..+=.+..+.
T Consensus 557 l~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ly 636 (1073)
T 3gjx_A 557 LRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFY 636 (1073)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 357888888888888889999999999999999888754321 2333344444444555666666666
Q ss_pred HHHHHHH
Q psy8267 186 NMLTRYA 192 (645)
Q Consensus 186 ~lL~~y~ 192 (645)
+.+....
T Consensus 637 eav~~vi 643 (1073)
T 3gjx_A 637 EAVGYMI 643 (1073)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666665
No 116
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=90.32 E-value=4.3 Score=39.75 Aligned_cols=141 Identities=9% Similarity=0.007 Sum_probs=96.9
Q ss_pred CcccchHHHHHHhccCCc--hhHHHHHHHHHHhcccCchH--HH---HHHHHHHHHcCCCCHHHHHHHHHHHhCCCc--c
Q psy8267 15 DASDLFPAVVKNVVSKNI--EVKKLVYVYLARYAEEQQDL--AL---LSISTFQRALKDPNQLIRASALRVLSSIRV--P 85 (645)
Q Consensus 15 dvs~lf~~vvkli~s~~~--~~KkL~Yl~l~~~~~~~~dl--~l---L~iNsl~kDL~~~N~~iralALr~ls~I~~--~ 85 (645)
++..-.+..|+++.|++. .++.-+--++..+...+++. .+ =.|..|.+-|.++++.++..|..+|.++.. +
T Consensus 5 ~~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 5 DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred chhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 456778999999999988 66665555666665444331 22 257888999999999999988888888743 3
Q ss_pred ccHHH-----HHHHHHhhcC-CCChHHHHHHHHHHHHHhhcCchh----HHHHHHHHHHhhc-------C---------C
Q psy8267 86 MIIPI-----VMLAIKDSSL-DMSPYVRKTAAHAIPKLYSLDPEQ----KEELVLVIEKLLQ-------D---------K 139 (645)
Q Consensus 86 ei~~~-----l~~~I~~~l~-d~~pyVRK~Aalal~kl~~~~p~~----~~~~~~~l~~lL~-------D---------~ 139 (645)
+--.. -++.+.+++. .+++.+|+.|+-++..+-.. ++. .++-++.|..++. | .
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhccHHHHHHHHhccccCCcccccccccccc
Confidence 32222 3567778886 57899999999888888643 332 2334555555442 1 2
Q ss_pred ChhHHHHHHHHHHHHCh
Q psy8267 140 TTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 140 ~~~V~~sav~~l~ei~~ 156 (645)
++.|..+|..++..++.
T Consensus 164 ~~~v~~na~~~L~nLss 180 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSS 180 (233)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 56788888888888764
No 117
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=88.84 E-value=29 Score=37.51 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHHHHHHHhhccc--cHHHHHH-HHHHhhccCChhhHHHHHHHHHHHhhcCCcchHHHHHHHHHhhcc---
Q psy8267 364 VDKAFVAATVQAIGKCAANIAQ--VTDTCLT-GLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDS--- 437 (645)
Q Consensus 364 ~d~~~~~~~i~~I~~la~k~~~--~~~~~v~-~ll~LL~~~~~~v~~e~v~~i~~il~~~p~~~~~~i~~L~~~l~~--- 437 (645)
.|+++.+++-.--..+.+.+.. ..+.|.. .....|+-+..|-.+.-|.- =..+..+-.-++++.|.+++++
T Consensus 333 ~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~E---Na~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 333 SDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSD---NIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHH---HSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHH---HHHHHHhcchHHHHHHHHHHhhhcc
Confidence 6888888765544555554332 2234433 33344554455666666621 2233334445688999999974
Q ss_pred ------CChHHHHHHHHHHHhcccccCCCchHHHHHH------HHHhhcCCchHHHHHHHHhhh
Q psy8267 438 ------ITVPTARAAILWLLGEYSHLVPALGPDVLRK------AAITFVNEEDIVKLQVLNLAP 489 (645)
Q Consensus 438 ------i~~~~ak~~~iwilGEy~~~i~~~~~diLr~------l~~~f~~e~~~vk~~iL~~~~ 489 (645)
..+|.+.+.++.=+|||....|+ .-.++.. ..+-...++++||.+.|.+.-
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~-gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 24677889999999999999998 4444443 223345688999999888763
No 118
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.54 E-value=14 Score=44.24 Aligned_cols=84 Identities=4% Similarity=0.080 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhceEEEcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhcc-ccHHHHHHHHH
Q psy8267 296 EVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISS-VDKAFVAATVQ 374 (645)
Q Consensus 296 niryv~L~~l~~l~~~~p~~~~~~~~~f~~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~-~d~~~~~~~i~ 374 (645)
.+|-.++.+|.++...+|+.+.+-+-.+|.-.+.+..||..|+.+|+. ++++ ...++.+..++.. .+.+++.-+-.
T Consensus 493 rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~-t~P~--~~~l~~ia~~l~~E~~~QV~sfv~S 569 (1056)
T 1lsh_A 493 RVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFE-SKPS--VALVSMVAVRLRREPNLQVASFVYS 569 (1056)
T ss_dssp HHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH-TCCC--HHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHHHH-HCcC--HHHHHHHHHHHhhCchHHHHHHHHH
Confidence 466677777777777677666555545555566778888888888875 4444 4466666666654 67777777777
Q ss_pred HHHHHHhh
Q psy8267 375 AIGKCAAN 382 (645)
Q Consensus 375 ~I~~la~k 382 (645)
.|..++..
T Consensus 570 ~l~sla~s 577 (1056)
T 1lsh_A 570 QMRSLSRS 577 (1056)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhc
Confidence 77777754
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=87.66 E-value=5.8 Score=39.46 Aligned_cols=138 Identities=14% Similarity=0.079 Sum_probs=93.4
Q ss_pred cccchHHHHHHhcc--CCchhHHHHHHH-HHH-hcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCC--CccccHH
Q psy8267 16 ASDLFPAVVKNVVS--KNIEVKKLVYVY-LAR-YAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI--RVPMIIP 89 (645)
Q Consensus 16 vs~lf~~vvkli~s--~~~~~KkL~Yl~-l~~-~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I--~~~ei~~ 89 (645)
...-.-.|+.++.. .--...|+-+|. +.. ..+.+|++.--....+..=-.|++..+|-.-..++... ..++++.
T Consensus 10 ~~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~ 89 (257)
T 3gs3_A 10 TATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP 89 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666631 111247777774 333 45567776555555555544578899999888888654 4578999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhc-------Cch----h------HHHHHHHHHHhhcCCChhHHHHHHHHHH
Q psy8267 90 IVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL-------DPE----Q------KEELVLVIEKLLQDKTTLVVGSAVMAFE 152 (645)
Q Consensus 90 ~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~-------~p~----~------~~~~~~~l~~lL~D~~~~V~~sav~~l~ 152 (645)
.+++.+..++.|.+|.|-|+|+.|...+|+. +|. . +..+.+.|..+++..+.||-.+|+.-+.
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e 169 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLE 169 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 9999999999999999999999999999963 232 1 1344556667777777887777665444
Q ss_pred H
Q psy8267 153 E 153 (645)
Q Consensus 153 e 153 (645)
.
T Consensus 170 ~ 170 (257)
T 3gs3_A 170 G 170 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=86.93 E-value=3.2 Score=40.18 Aligned_cols=149 Identities=6% Similarity=-0.072 Sum_probs=90.6
Q ss_pred HHHHhccCCchhHHHHHHHHHHhccc-CchHHHHHHHHHHHHcCCCC-HHHHHHHHHHHhCCC--ccccHHHHHHHHHhh
Q psy8267 23 VVKNVVSKNIEVKKLVYVYLARYAEE-QQDLALLSISTFQRALKDPN-QLIRASALRVLSSIR--VPMIIPIVMLAIKDS 98 (645)
Q Consensus 23 vvkli~s~~~~~KkL~Yl~l~~~~~~-~~dl~lL~iNsl~kDL~~~N-~~iralALr~ls~I~--~~ei~~~l~~~I~~~ 98 (645)
+-.+..++.++.+-++-+++...... .++ .+-.+..+... -+| ..+=++| ++++.+- .++ .+...+.+.
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~~-~l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W 132 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRFSLE-EVVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALF 132 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGCCHH-HHHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHH
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhCCHH-HHHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHH
Confidence 45566677777777777777655432 222 11111122111 223 4555565 5555542 222 134456889
Q ss_pred cCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcCCCc
Q psy8267 99 SLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDE 178 (645)
Q Consensus 99 l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~~~~ 178 (645)
+.|+++++||.|+.+.+...+ -+-.+...+.+..++.|++..|.-+..-+|.++...+++..... + .-..+++
T Consensus 133 ~~s~~~w~rR~ai~~~l~~~~--~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~f----l-~~~~l~~ 205 (220)
T 2b6c_A 133 YGAENFWNRRVALNLQLMLKE--KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEEL----M-KELVLSP 205 (220)
T ss_dssp TTCSSHHHHHHHHHTTTTCGG--GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH----H-HHSCCCH
T ss_pred HcCCCHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHH----H-hhccCCH
Confidence 999999999999998864322 12234567778889999999999999999999987766543222 2 1245677
Q ss_pred hhHHHHH
Q psy8267 179 WGQVFIL 185 (645)
Q Consensus 179 W~Qv~iL 185 (645)
|..-+.+
T Consensus 206 ~~~r~Ai 212 (220)
T 2b6c_A 206 LAQREGS 212 (220)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7655544
No 121
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=84.76 E-value=19 Score=32.15 Aligned_cols=111 Identities=7% Similarity=0.063 Sum_probs=71.1
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhhhceEE
Q psy8267 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPYLKSFY 324 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~ 324 (645)
+.+-+++.+.+.+.+-+..++.+..+-. .+ ..-+.++.++.+-|. ++|++++.+|..+..++......|...+.+
T Consensus 8 ~~iekAT~~~l~~~dw~~ileicD~I~~-~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas-- 83 (140)
T 3ldz_A 8 QDVEKATSEMNTAEDWGLILDICDKVGQ-SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS-- 83 (140)
T ss_dssp HHHHHHTCTTSSSCCHHHHHHHHHHHTT-ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS--
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHC-CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh--
Confidence 4455667777778888889988877643 22 234567788887774 789999999998888887655566544321
Q ss_pred EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcccc
Q psy8267 325 VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQV 386 (645)
Q Consensus 325 ~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~ 386 (645)
...++||..-+...++.++.++...|..-+..|+..
T Consensus 84 --------------------------~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 84 --------------------------RDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp --------------------------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 112222222222346677777777776666666544
No 122
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=83.65 E-value=0.99 Score=53.80 Aligned_cols=173 Identities=12% Similarity=0.061 Sum_probs=111.0
Q ss_pred hHHHHHHhccCCc-hhHHH-HHHHHHHhccc--CchHHHHHHHHHHHHcC-CCCHHHHHHHHHHHhC-------CCcccc
Q psy8267 20 FPAVVKNVVSKNI-EVKKL-VYVYLARYAEE--QQDLALLSISTFQRALK-DPNQLIRASALRVLSS-------IRVPMI 87 (645)
Q Consensus 20 f~~vvkli~s~~~-~~KkL-~Yl~l~~~~~~--~~dl~lL~iNsl~kDL~-~~N~~iralALr~ls~-------I~~~ei 87 (645)
.|.+.++...+|. ++.++ .+..+..++.. .++.+-.+++++.+-.+ +++- .|..+|.++-. +-.++-
T Consensus 762 lP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~ 840 (997)
T 1vsy_5 762 LPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE 840 (997)
T ss_dssp TTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH
T ss_pred HHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3333444444444 67777 66666666543 35556678888877776 6777 99999888632 122333
Q ss_pred HHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHhhcC-c-hhHHHHHHHHHHhh-c-----------CCChhHHHHHHHHHH
Q psy8267 88 IPIVMLAIKDSSLDMS-PYVRKTAAHAIPKLYSLD-P-EQKEELVLVIEKLL-Q-----------DKTTLVVGSAVMAFE 152 (645)
Q Consensus 88 ~~~l~~~I~~~l~d~~-pyVRK~Aalal~kl~~~~-p-~~~~~~~~~l~~lL-~-----------D~~~~V~~sav~~l~ 152 (645)
.+.+...|.++|.|+. .-||..|+.++.-+.+-. + ...++++..+.+.+ + +++.....+|+-++.
T Consensus 841 ~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~ 920 (997)
T 1vsy_5 841 KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLG 920 (997)
T ss_dssp HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHH
Confidence 3677888999999999 999999999998887766 5 44445555444433 2 111123345555555
Q ss_pred HHC---hhh---hhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Q psy8267 153 EVC---PER---IDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYART 194 (645)
Q Consensus 153 ei~---~~~---~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~ 194 (645)
.+. |-. ++.+++.+..|++...++.| ....+=+.|+.|.|+
T Consensus 921 AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 921 AIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKV 967 (997)
T ss_dssp HHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHH
T ss_pred HHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence 554 533 45677777788887788766 444555677777765
No 123
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=81.70 E-value=11 Score=42.65 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=49.9
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhcCchhH-----HHHH-HHHHHhhcCCChhHHHHHHHHHHHHChh
Q psy8267 95 IKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK-----EELV-LVIEKLLQDKTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 95 I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~-----~~~~-~~l~~lL~D~~~~V~~sav~~l~ei~~~ 157 (645)
+.+.+.+++|-+|..|+.|+..+.. +|+.. ++.+ ..|..+|.|++..|+.+|..+|..++.+
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3445889999999999999999985 77642 3344 4578899999999999999999888754
No 124
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=80.35 E-value=1.1e+02 Score=36.99 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHhCCCcc-ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh-----cCchhHHHHHHHHHHhhcC---
Q psy8267 68 NQLIRASALRVLSSIRVP-MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS-----LDPEQKEELVLVIEKLLQD--- 138 (645)
Q Consensus 68 N~~iralALr~ls~I~~~-ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~-----~~p~~~~~~~~~l~~lL~D--- 138 (645)
++..|..|-..|-.+... +-...+...+. -.+.+++||--|+..+-+..+ +.++....+.+.+.+++..
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~ 103 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTL 103 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSC
T ss_pred ChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcc
Confidence 778899998888776543 34444433331 255689999999998877654 3556666666666666542
Q ss_pred ----CChhHHHHHHHHHHHHC----hhhh-hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy8267 139 ----KTTLVVGSAVMAFEEVC----PERI-DMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYA 192 (645)
Q Consensus 139 ----~~~~V~~sav~~l~ei~----~~~~-~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~ 192 (645)
..+.|......++.+|. |++| +++ ..|++.+.. ++-.....+.+|...+
T Consensus 104 ~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll----~~L~~~~~~-~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 104 NILEEENHIKDALSRIVVEMIKREWPQHWPDML----IELDTLSKQ-GETQTELVMFILLRLA 161 (1204)
T ss_dssp CTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHH----HHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhCcccchHHH----HHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 34566555555555554 6666 343 334544443 4443445666666665
No 125
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=79.53 E-value=1.8 Score=42.83 Aligned_cols=69 Identities=22% Similarity=0.190 Sum_probs=51.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCC
Q psy8267 60 FQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDK 139 (645)
Q Consensus 60 l~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~ 139 (645)
+..-++|+++.||..|.+.++ + ..+..++.|+++.||+.|+..+ .+ +.+..++.|+
T Consensus 151 l~~l~~D~d~~VR~~aa~~l~----~-------~ll~~ll~D~d~~VR~aaa~~l------~~-------~~L~~Ll~D~ 206 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRLP----E-------ESLGLMTQDPEPEVRRIVASRL------RG-------DDLLELLHDP 206 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHSC----G-------GGGGGSTTCSSHHHHHHHHHHC------CG-------GGGGGGGGCS
T ss_pred HHHHHcCCCHHHHHHHHHcCC----H-------HHHHHHHcCCCHHHHHHHHHhC------CH-------HHHHHHHcCC
Confidence 445568999999999988732 1 2234688999999999999763 22 2456788999
Q ss_pred ChhHHHHHHHHHH
Q psy8267 140 TTLVVGSAVMAFE 152 (645)
Q Consensus 140 ~~~V~~sav~~l~ 152 (645)
+..|..+++..+.
T Consensus 207 d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 207 DWTVRLAAVEHAS 219 (244)
T ss_dssp SHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCC
Confidence 9999988877654
No 126
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=79.41 E-value=3.9 Score=40.06 Aligned_cols=60 Identities=2% Similarity=-0.031 Sum_probs=30.2
Q ss_pred CCChHHHHHHHH----HHHHHhhc--CchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhh
Q psy8267 101 DMSPYVRKTAAH----AIPKLYSL--DPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERID 160 (645)
Q Consensus 101 d~~pyVRK~Aal----al~kl~~~--~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~ 160 (645)
|++.++|+.|.. -+..+..+ +.+..+.+.+.+...+.|++..|.-+.--+|.++...+++
T Consensus 119 s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 119 SGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHH
Confidence 356666666665 32332212 1223455555555566666666655555555555544333
No 127
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=79.07 E-value=67 Score=33.70 Aligned_cols=240 Identities=15% Similarity=0.151 Sum_probs=129.5
Q ss_pred ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHH-hhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHH
Q psy8267 86 MIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKL-YSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHK 164 (645)
Q Consensus 86 ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl-~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~ 164 (645)
..-+.+...+..+-...+. .|=....-+..+ +..+|+..++|.+.|..+-.|++..|.-..+..+.|.|....+++..
T Consensus 22 ~~~~~v~~lln~A~~~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~ 100 (386)
T 3o2t_A 22 TTSERVVDLLNQAALITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK 100 (386)
T ss_dssp CHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred cHHHHHHHHHHhhhccChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433332 433333344553 55799999999999999999999999988888888888766666555
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcCCcccccccccccccccccChh
Q psy8267 165 SYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPD 244 (645)
Q Consensus 165 ~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r~~~~~P~~~~~~s~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~d 244 (645)
....|...|.+-++-..-.++...+...+.
T Consensus 101 ~l~~L~~LL~d~d~~V~K~~I~~~tslYpl-------------------------------------------------- 130 (386)
T 3o2t_A 101 LIANLNMLLRDENVNVVKKAILTMTQLYKV-------------------------------------------------- 130 (386)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 555555555554443322233322221100
Q ss_pred HHHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhc-ccchh-----
Q psy8267 245 HRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKR-RALFV----- 317 (645)
Q Consensus 245 ~~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~-p~~~~----- 317 (645)
.++.+ .++.+.....+.+. +.+..+...++.++. .+..+|-.++.-+..++... |..-.
T Consensus 131 ---~f~~i---~~~~~~~~~~e~~W--------~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~ 196 (386)
T 3o2t_A 131 ---ALQWM---VKSRVISELQEACW--------DMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPR 196 (386)
T ss_dssp ---HHHHH---HHC-CCCHHHHHHH--------HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCG
T ss_pred ---HHHHH---hcCCCcchhHHHHH--------HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCccccc
Confidence 00000 00111000000000 112334444555553 34567776666666654322 11000
Q ss_pred hhhceEE---EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhhccccHHHHHH
Q psy8267 318 PYLKSFY---VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISS--VDKAFVAATVQAIGKCAANIAQVTDTCLT 392 (645)
Q Consensus 318 ~~~~~f~---~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~~--~d~~~~~~~i~~I~~la~k~~~~~~~~v~ 392 (645)
..-..|- +..+-| .++..+|+- | ...+++.|+.++.+ .+.-..-.++.+++.+|.+-|.....++.
T Consensus 197 ~~~~d~SL~~VP~nHp-~L~~~~Le~------E--A~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~ 267 (386)
T 3o2t_A 197 RQEHDISLDRIPRDHP-YIQYNVLWE------E--GKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQ 267 (386)
T ss_dssp GGTTSCCGGGSCTTCS-SSCHHHHHH------H--HHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred ccCCCCCHhhCCCCCC-cCCHHHHHH------H--HHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 0001221 222322 355555441 1 46788888888875 34455566899999999999999999999
Q ss_pred HHHHhhc
Q psy8267 393 GLVSLLS 399 (645)
Q Consensus 393 ~ll~LL~ 399 (645)
.+..+-.
T Consensus 268 aL~~l~~ 274 (386)
T 3o2t_A 268 AYETLHA 274 (386)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 9987654
No 128
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=78.75 E-value=37 Score=30.59 Aligned_cols=118 Identities=10% Similarity=0.091 Sum_probs=76.1
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcccchhhhhceEE
Q psy8267 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRRALFVPYLKSFY 324 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~ 324 (645)
+.+-+++.+.+.+.+-+..++.+..+-. .+ ..-+.++.+|.+-| +.++++++.+|..+..++......|...+.+
T Consensus 14 ~~IekATs~~l~~~dw~~ileicD~I~~-~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias-- 89 (149)
T 3g2s_A 14 ARINRATNPLNKELDWASINGFCEQLNE-DF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK-- 89 (149)
T ss_dssp HHHHHHSCTTCSSCCHHHHHHHHHHGGG-SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS--
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHC-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh--
Confidence 4555667777888888889988877643 22 23456777777766 4789999999999998888776666544421
Q ss_pred EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHhhccccHH
Q psy8267 325 VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYI-SSVDKAFVAATVQAIGKCAANIAQVTD 388 (645)
Q Consensus 325 ~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl-~~~d~~~~~~~i~~I~~la~k~~~~~~ 388 (645)
+.-|+-|.+++.+. |. ...+..++.++..-|..-+..|+....
T Consensus 90 ----------~~Fl~eL~kl~~~k-----------~~~~~~~~~Vk~kil~li~~W~~~f~~~p~ 133 (149)
T 3g2s_A 90 ----------FRFLNELIKVVSPK-----------YLGSRTSEKVKNKILELLYSWTVGLPEEVK 133 (149)
T ss_dssp ----------HHHHHHHHHHHCTT-----------TTGGGSCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ----------HHHHHHHHHHHccc-----------ccCCCCCHHHHHHHHHHHHHHHHHhCCCch
Confidence 12222233333222 22 135677788887777777777765543
No 129
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=76.57 E-value=5.7 Score=38.40 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=52.7
Q ss_pred HHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHH
Q psy8267 60 FQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129 (645)
Q Consensus 60 l~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~ 129 (645)
+.+=..|+|+.+|=.|+-+.-.-....-.+.+..-+..++.|++-||||..+-++--+++.+|+.+..++
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4556689999888777664422222333455666667799999999999999999999999999876665
No 130
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.17 E-value=37 Score=31.07 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=53.7
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccchhhhh
Q psy8267 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVPYL 320 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~-s~~niryv~L~~l~~l~~~~p~~~~~~~ 320 (645)
+.+-+++.+.+.+.+-+..++.+..+-.- + ..-+.++.+|.+-|. .++++++.+|..+..++......|...+
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~-~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGST-P-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHS-S-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCC-C-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45556777777788889999988877652 2 234567788887774 7899999999999988876666665443
No 131
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=75.15 E-value=16 Score=35.54 Aligned_cols=155 Identities=10% Similarity=0.082 Sum_probs=92.4
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHhccc-CchHHHHHHHHHHHHcCCCC-HHHHHHHHHHHhCCC--ccccHHHHHHHHH
Q psy8267 21 PAVVKNVVSKNIEVKKLVYVYLARYAEE-QQDLALLSISTFQRALKDPN-QLIRASALRVLSSIR--VPMIIPIVMLAIK 96 (645)
Q Consensus 21 ~~vvkli~s~~~~~KkL~Yl~l~~~~~~-~~dl~lL~iNsl~kDL~~~N-~~iralALr~ls~I~--~~ei~~~l~~~I~ 96 (645)
..+-.+..+...+.+-++-.++..+.+. .++- +-.+..+.. ..+| ..+-++|-++++.+- .++ .+...+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-l~~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~~p~---~~~~~l~ 137 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETH-IPFLEELIV--TKSWWDSVDSIVPTFLGDIFLKHPE---LISAYIP 137 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-HHHHHHHHT--SSCCHHHHHHHTTTHHHHHHHHCGG---GGGGTHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHc--cCCChHHHHHhhHHHHHHHHHHCHH---HHHHHHH
Confidence 3455666776666665555555543321 2221 111122322 2233 344455555544431 233 1223457
Q ss_pred hhcCCCChHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHHHHHHHHHhcC
Q psy8267 97 DSSLDMSPYVRKTAAHAIPKLYS-LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVD 175 (645)
Q Consensus 97 ~~l~d~~pyVRK~Aalal~kl~~-~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~~~kL~~~L~~ 175 (645)
+.+.|.++++||.|+.++...+. .+| +.+.+.+..++.|++..|.-+.--+|.++...+++.+.. .+.. ..
T Consensus 138 ~W~~s~~~w~rR~ai~~~l~~~~~~d~---~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~----fl~~-~~ 209 (232)
T 3jxy_A 138 KWIASDNIWLQRAAILFQLKYKQKMDE---ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWE----YVQN-NE 209 (232)
T ss_dssp HHHHSSCHHHHHHHHHTTTTCGGGCCH---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHH----HHHH-SC
T ss_pred HHhcCCchHHHHHHHHHHHHHHhCCCH---HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHH----HHHH-CC
Confidence 78899999999999998765442 233 345677888999999999999989999998776654322 2221 26
Q ss_pred CCchhHHHHHHHHH
Q psy8267 176 VDEWGQVFILNMLT 189 (645)
Q Consensus 176 ~~~W~Qv~iL~lL~ 189 (645)
.++|..-+.++-|.
T Consensus 210 l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 210 LAPLSKREAIKHIK 223 (232)
T ss_dssp CCHHHHHHHTTTTH
T ss_pred CCHHHHHHHHHhcc
Confidence 78888777776554
No 132
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=72.42 E-value=9 Score=37.25 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=51.9
Q ss_pred HHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHH
Q psy8267 61 QRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVL 130 (645)
Q Consensus 61 ~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~ 130 (645)
.+=..|+|+.+|=.|+-.+-.-....-.+.+...+..++.|++.||||..+-++--+++.+|+.+..+++
T Consensus 137 ~~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 137 PKWIASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HHHHHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 3345688998887777554332222333455666778899999999999999999999999998766554
No 133
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=72.12 E-value=18 Score=40.07 Aligned_cols=126 Identities=16% Similarity=0.102 Sum_probs=86.9
Q ss_pred hccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCccccHHHHHHHHHhhcCC---CC
Q psy8267 27 VVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLD---MS 103 (645)
Q Consensus 27 i~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~~~ei~~~l~~~I~~~l~d---~~ 103 (645)
...+.-+.+.=|-+.+..+.+--.+ .--+++.+.+-|.|+++.||+.|--+|.-+..++-++.+..-+=.++.+ -+
T Consensus 272 l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLS 350 (800)
T 3oc3_A 272 LDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS 350 (800)
T ss_dssp GGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCC
T ss_pred cCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccc
Confidence 3667788888888877755211112 4567899999999999999999999999887766666666666555543 23
Q ss_pred hHHHHHHHH-HHHHHhhcCchh--HHHHHHHHHHhhcCCChhHHHHHHHHHHHHC
Q psy8267 104 PYVRKTAAH-AIPKLYSLDPEQ--KEELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155 (645)
Q Consensus 104 pyVRK~Aal-al~kl~~~~p~~--~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~ 155 (645)
+-+ ..++ -+.+++...++. .+.+++++-.+|...-+.|..|++.++..+.
T Consensus 351 AST--gSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 351 VSK--TSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TTH--HHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred hhh--HHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 322 3333 345555543332 1467778888999999999999988887665
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=69.73 E-value=56 Score=31.49 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=52.1
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcccchhhhh
Q psy8267 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRRALFVPYL 320 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p~~~~~~~ 320 (645)
+++-+++.+.+...+-+..++.+..+-. .+ ..-+.++.+|.+-| +.++++++.+|..+..++..-...|...+
T Consensus 11 ~~i~kAT~~~~~~~dw~~ileicD~I~~-~~-~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ei 84 (226)
T 3zyq_A 11 RLLDKATSQLLLETDWESILQICDLIRQ-GD-TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEV 84 (226)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHT-TS-SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhC-CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhh
Confidence 3455666777777888899998887753 22 22356777777766 47899999999999888876665565443
No 135
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=66.84 E-value=13 Score=42.18 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=44.4
Q ss_pred HHHHHhccCCchhHHHHHHHHHHhcccCchH-HHH----HHHHHHHHcCCCCHHHHHHHHHHHhCCC
Q psy8267 22 AVVKNVVSKNIEVKKLVYVYLARYAEEQQDL-ALL----SISTFQRALKDPNQLIRASALRVLSSIR 83 (645)
Q Consensus 22 ~vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl-~lL----~iNsl~kDL~~~N~~iralALr~ls~I~ 83 (645)
.+++.++|++...|..+-.++..+....+.. .++ +...+.+-|.|+|+.+|..|.-+|.++.
T Consensus 38 Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 38 PVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp HHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3677789999999999999999988632221 122 2333455688999999988877777663
No 136
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=65.22 E-value=85 Score=28.84 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=53.3
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcccchhhhh
Q psy8267 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRRALFVPYL 320 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p~~~~~~~ 320 (645)
+.+-+++.+.+.+.+-+..++.+..+-.-. ..-+.++.+|.+-| +.++++++.+|..+..++......|...+
T Consensus 16 ~~IekATs~~l~~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ev 89 (171)
T 1juq_A 16 SWLNKATNPSNRQEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEV 89 (171)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 445566677777888899999888776532 23456778887777 47899999999999988876666665433
No 137
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=64.47 E-value=59 Score=30.72 Aligned_cols=94 Identities=9% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCccccHHHHHHHHHhhcCCC--Ch-HHHHHHHHHHHHHhhcC----chhHHHHHHHHHHhhcC--CChhHHHHHHHHHH
Q psy8267 82 IRVPMIIPIVMLAIKDSSLDM--SP-YVRKTAAHAIPKLYSLD----PEQKEELVLVIEKLLQD--KTTLVVGSAVMAFE 152 (645)
Q Consensus 82 I~~~ei~~~l~~~I~~~l~d~--~p-yVRK~Aalal~kl~~~~----p~~~~~~~~~l~~lL~D--~~~~V~~sav~~l~ 152 (645)
+..+--+-.+++++..|+-.+ .+ .+|..||..+..+++.. |...+.....+.+.+.| ++......|+..+.
T Consensus 79 l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~ 158 (196)
T 4atg_A 79 VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLS 158 (196)
T ss_dssp CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 555566666777777776443 23 89999999999998864 55566777777777766 45677778999999
Q ss_pred HHChhhhh-hhHHHHHHHHHHhcC
Q psy8267 153 EVCPERID-MIHKSYRKLCNLLVD 175 (645)
Q Consensus 153 ei~~~~~~-li~~~~~kL~~~L~~ 175 (645)
++.++-.. ++-|+.+.+.+.+.+
T Consensus 159 ~lG~~~vr~~llP~l~~~~~~~~~ 182 (196)
T 4atg_A 159 ILSKNVVNTVIREHAEEYKRTIGK 182 (196)
T ss_dssp HHCHHHHHTHHHHHHHHHHHHTCC
T ss_pred HhHHHHHHHhhhcCHHHHHHHHHH
Confidence 99887664 455666666655543
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=63.42 E-value=83 Score=28.15 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=70.9
Q ss_pred HHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcccchhhhhceEEEc
Q psy8267 248 LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVR 326 (645)
Q Consensus 248 ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~~l 326 (645)
+-+++.+.+.+.+-+..++.+..+-.- + ..-+.++.++.+-| +.++++++.+|..+..++......|...+.
T Consensus 6 iekATs~~l~~~dw~~~leicD~I~~~-~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva----- 78 (148)
T 1mhq_A 6 LNKATDPSMSEQDWSAIQNFCEQVNTD-P-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVA----- 78 (148)
T ss_dssp HHHHHCTTCSSCCHHHHHHHHHHHHHS-S-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHT-----
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh-----
Confidence 445566667777778888888777543 2 23456777777767 478999999999999988766666654432
Q ss_pred CCCChHHHHHHHHHHHHccCcCCHHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhccccH
Q psy8267 327 SSDPTHVKTLKLELLTTLASETSIASILREFQTYIS-SVDKAFVAATVQAIGKCAANIAQVT 387 (645)
Q Consensus 327 ~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL~~yl~-~~d~~~~~~~i~~I~~la~k~~~~~ 387 (645)
++.-|+-|.+++.+. |.. ..+..++.++..-|..-+..|+...
T Consensus 79 -------s~~Fl~eL~kl~~~k-----------~~~~~~~~~Vk~kil~li~~W~~~f~~~p 122 (148)
T 1mhq_A 79 -------KFRFLNELIKVLSPK-----------YLGSWATGKVKGRVIEILFSWTVWFPEDI 122 (148)
T ss_dssp -------SHHHHHHHHHTTCCS-----------TTSCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred -------hHHHHHHHHHHHccc-----------cCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 122233333333332 221 1356666666666666666665443
No 139
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=62.16 E-value=54 Score=29.90 Aligned_cols=87 Identities=9% Similarity=0.045 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHH------HHHHHHHHhc-CCCchhH
Q psy8267 109 TAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHK------SYRKLCNLLV-DVDEWGQ 181 (645)
Q Consensus 109 ~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~------~~~kL~~~L~-~~~~W~Q 181 (645)
...+.++-+.+..++...+.+..|.+-|..+|+.|+..|+.++..+....-..+|. ....|.+++. ..++-.+
T Consensus 34 ~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk 113 (163)
T 1x5b_A 34 SLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVC 113 (163)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHH
Confidence 44566667777777666677788888899999999999988877665432223332 1223333333 3677888
Q ss_pred HHHHHHHHHHHhhh
Q psy8267 182 VFILNMLTRYARTQ 195 (645)
Q Consensus 182 v~iL~lL~~y~r~~ 195 (645)
-+++.++......+
T Consensus 114 ~kil~li~~W~~~f 127 (163)
T 1x5b_A 114 EKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999887643
No 140
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=60.88 E-value=10 Score=32.06 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=46.1
Q ss_pred CCCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEEecCCCCCC-ccEEee
Q psy8267 535 SPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPL-SPRLVW 607 (645)
Q Consensus 535 ~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 607 (645)
-++...++++|+|--+.++++..+.++| .|+.-.-...++.+.||+++++++ +|.+...-. .+..+|
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG----~GL~~~~~~~~~~v~pg~~~~~~~--~~~P~~~G~~~L~a~f 85 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEG----SGLQRPKILNVGDIGGNETVTLRQ--SFVPVRPGPRQLIASL 85 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEE----TTTEEEEEEEECCBCTTCEEEEEE--EECCCSCSSCCCEEEE
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEEC----CCCCcceEEEcCcCCCCCEEEEEE--EEecCcccceEEEEEE
Confidence 4566789999999999999999998885 255433233456899999988555 544443333 454443
No 141
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=60.35 E-value=44 Score=32.36 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHH----HHhCCCc----cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q psy8267 65 KDPNQLIRASALR----VLSSIRV----PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIE 133 (645)
Q Consensus 65 ~~~N~~iralALr----~ls~I~~----~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~ 133 (645)
.|+|+..|-.|+- .++.... ..-.+.+..-+...+.|+..||||...-++.-+.+.+|+.+..+++.-+
T Consensus 118 ~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~~ 194 (235)
T 1t06_A 118 ASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAK 194 (235)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 4566666666665 4444331 2233445555555666666666666666666666666666555544333
No 142
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.47 E-value=66 Score=30.96 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=56.2
Q ss_pred HHHHhccCCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC------------CCccccHHH
Q psy8267 23 VVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS------------IRVPMIIPI 90 (645)
Q Consensus 23 vvkli~s~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~------------I~~~ei~~~ 90 (645)
|-+..+.++.+.---+-+.+.-..+.+++-+--++-+|+|-|+++||.+.-+||..|-. |...++.+.
T Consensus 13 i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~ 92 (226)
T 3zyq_A 13 LDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEE 92 (226)
T ss_dssp HHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHH
Confidence 33333333333333344455555556666678888999999999999999999987743 345555544
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHH
Q psy8267 91 VMLAIKDSSLDMSPYVRKTAAHAIPK 116 (645)
Q Consensus 91 l~~~I~~~l~d~~pyVRK~Aalal~k 116 (645)
+..-+. ...++-||+++..-+..
T Consensus 93 l~~l~~---~~~~~~Vk~kil~li~~ 115 (226)
T 3zyq_A 93 LKDLLK---RQVEVNVRNKILYLIQA 115 (226)
T ss_dssp HHHHHH---HCCCHHHHHHHHHHHHH
T ss_pred HHHHhc---cCCCHHHHHHHHHHHHH
Confidence 433221 23467788877655443
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=58.41 E-value=1.7e+02 Score=30.04 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=47.1
Q ss_pred hhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHH-----HHHHhhcCCChhHHHHHHHHHHHHCh
Q psy8267 97 DSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVL-----VIEKLLQDKTTLVVGSAVMAFEEVCP 156 (645)
Q Consensus 97 ~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~-----~l~~lL~D~~~~V~~sav~~l~ei~~ 156 (645)
+.+.+.+.-.+|.|...+.++++.|++.+.+|+. .|.+...+.+.....-++.||.++.-
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~ 189 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML 189 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh
Confidence 3344567888999999999999999998766644 56677778888888888888888863
No 144
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=56.41 E-value=3.2e+02 Score=32.62 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=81.1
Q ss_pred HHHHHhCCCccccHHHHHHHHHhhcCC--CChHHHHHHHHHHHHH-hhcCch----hHHHHHHHHHHhhcCC---C-hhH
Q psy8267 75 ALRVLSSIRVPMIIPIVMLAIKDSSLD--MSPYVRKTAAHAIPKL-YSLDPE----QKEELVLVIEKLLQDK---T-TLV 143 (645)
Q Consensus 75 ALr~ls~I~~~ei~~~l~~~I~~~l~d--~~pyVRK~Aalal~kl-~~~~p~----~~~~~~~~l~~lL~D~---~-~~V 143 (645)
+|-.++++...++.+.+.+.+.+.+.. .++-.+-+++.|+..+ -...++ .+++.++.|..|.+.+ + ..+
T Consensus 462 ~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~ 541 (1073)
T 3gjx_A 462 TLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAI 541 (1073)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHH
Confidence 556677788888888888888877654 4788999999999888 445543 2355666666666543 1 233
Q ss_pred HHHHH-HHHHHH---ChhhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 144 VGSAV-MAFEEV---CPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 144 ~~sav-~~l~ei---~~~~~~li~~~~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
+.+.+ ..+... ...+++++.+.+.+|++.+.+.++=.|-..-+.|.+.+.
T Consensus 542 vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 542 IASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 33333 343332 234677888888999999988888888777777777654
No 145
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.16 E-value=64 Score=28.59 Aligned_cols=87 Identities=9% Similarity=0.002 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHH------HHHHHHHHhcCCCchhHH
Q psy8267 109 TAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHK------SYRKLCNLLVDVDEWGQV 182 (645)
Q Consensus 109 ~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~------~~~kL~~~L~~~~~W~Qv 182 (645)
.+.+-++-+.+..|+.-.+.+..|.+-|..+++.|+..|+.++..+....-.-+|. ....|.+.+...++=.+-
T Consensus 24 ~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~ 103 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCE 103 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHH
Confidence 45666777777777666677788888899999999999988775554322222332 223344444556777788
Q ss_pred HHHHHHHHHHhhh
Q psy8267 183 FILNMLTRYARTQ 195 (645)
Q Consensus 183 ~iL~lL~~y~r~~ 195 (645)
+++.++......+
T Consensus 104 kil~li~~W~~~f 116 (140)
T 3ldz_A 104 KLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887543
No 146
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=54.54 E-value=1.2e+02 Score=27.16 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=61.5
Q ss_pred cchHHHHHHhcc-CCchhHHHHHHHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC------------CCc
Q psy8267 18 DLFPAVVKNVVS-KNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS------------IRV 84 (645)
Q Consensus 18 ~lf~~vvkli~s-~~~~~KkL~Yl~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~------------I~~ 84 (645)
.-|-+.|.-..+ ...+.---+-+-++-..+.+++-.--++-+++|-++++||.+.-+||..|-. |..
T Consensus 10 ~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias 89 (149)
T 3g2s_A 10 ETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK 89 (149)
T ss_dssp CCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 334444443333 3333333344456666677777788899999999999999999999987743 334
Q ss_pred cccHHHHHHHHHhhcCC------CChHHHHHHHHHHHHHh
Q psy8267 85 PMIIPIVMLAIKDSSLD------MSPYVRKTAAHAIPKLY 118 (645)
Q Consensus 85 ~ei~~~l~~~I~~~l~d------~~pyVRK~Aalal~kl~ 118 (645)
.++. ..+.+.+.+ .++-||++....+..-.
T Consensus 90 ~~Fl----~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 90 FRFL----NELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHH----HHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4433 344555543 46788888776655443
No 147
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=53.19 E-value=2.1e+02 Score=34.93 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhhcccchhhhhceEE-EcCCCChHHHHHHHHHHHHccCcCCHHHHHHHH
Q psy8267 279 EVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFY-VRSSDPTHVKTLKLELLTTLASETSIASILREF 357 (645)
Q Consensus 279 ~~~~~~~~L~~lL~s~~niryv~L~~l~~l~~~~p~~~~~~~~~f~-~l~~d~~~Ir~~kLdlL~~L~~~~Nv~~Il~EL 357 (645)
.-..+++.|..+|..++++.-.+|+++..|-. .++..+.-....+ .+.+=+...==--+..|..-++.+|+..++++|
T Consensus 189 ~H~~v~~~L~~lL~~~~~L~~~iLdaLs~L~L-s~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~L 267 (1323)
T 3s4w_B 189 QHANVGKELGELLVQNTSLTVPILDVFSSLRL-DPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAEL 267 (1323)
T ss_dssp GHHHHHHHHHHHHHHCSTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCcchHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHH
Confidence 34568888999998888899999999988743 4444332222221 111111000111233466667889999999888
Q ss_pred HHhh
Q psy8267 358 QTYI 361 (645)
Q Consensus 358 ~~yl 361 (645)
.+-+
T Consensus 268 R~~L 271 (1323)
T 3s4w_B 268 RENL 271 (1323)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8644
No 148
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.81 E-value=70 Score=28.90 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=51.6
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHhhcccchh
Q psy8267 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR--SSREVQTVVLTTIASLAVKRRALFV 317 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~--s~~niryv~L~~l~~l~~~~p~~~~ 317 (645)
+.+-+++.+.+.+.+-+..++.+..+-. .+ ..-+.++.++.+-|. .++++++.+|..+..++......|.
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~-~~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh 90 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINE-TE-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFH 90 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHH-SS-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhC-CC-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 4455677777888888999998887754 22 245677888888784 5689999999999988876655554
No 149
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=48.98 E-value=41 Score=28.77 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=38.6
Q ss_pred eEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEEecC
Q psy8267 539 ISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLND 596 (645)
Q Consensus 539 ~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 596 (645)
..+.|++.||++.+ ..+++.+.| . .|+++.+... -.++||+...+.+.+....
T Consensus 33 N~Ytlki~Nkt~~~-~~~~l~v~g--~-~~l~~~g~~~-i~v~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 33 NTYTLKVINKTQQV-QEYNLDVKG--L-NDVSWYGKQT-IQVEPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEECSSSC-EEEEEEEES--C-SSCEEESCCE-EEECTTCEEEEEEEEEECG
T ss_pred EEEEEEEEECCCCC-EEEEEEEeC--C-cccEEeCCCc-EEECCCCEEEEEEEEEECh
Confidence 56789999999998 668888874 2 3688875332 2899999877666666443
No 150
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=46.83 E-value=65 Score=32.66 Aligned_cols=90 Identities=11% Similarity=0.196 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHHhhcCchh-----------HHHHHHHHHHhhcC---CChhHHHHHHHHHHHHChhhhhhhH---HH
Q psy8267 103 SPYVRKTAAHAIPKLYSLDPEQ-----------KEELVLVIEKLLQD---KTTLVVGSAVMAFEEVCPERIDMIH---KS 165 (645)
Q Consensus 103 ~pyVRK~Aalal~kl~~~~p~~-----------~~~~~~~l~~lL~D---~~~~V~~sav~~l~ei~~~~~~li~---~~ 165 (645)
.+-+|..|+-.|....|-+|.. +..+.+.+..++.. ....++-.-++++.++.++..++-+ ..
T Consensus 83 ~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~ 162 (315)
T 3qml_C 83 PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVV 162 (315)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHH
T ss_pred ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHH
Confidence 3445666666666655555554 34455555555533 2233444667777777765322211 12
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHh
Q psy8267 166 YRKLCNLLVDVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 166 ~~kL~~~L~~~~~W~Qv~iL~lL~~y~r 193 (645)
+.+++... ..++=.|+++++++..+..
T Consensus 163 L~~ly~~~-~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 163 LQNVYERN-NKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccC-CCCHHHHHHHHHHHHHHcc
Confidence 33444432 2245557788999988764
No 151
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=46.68 E-value=1e+02 Score=27.74 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=64.3
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHhhcccchhhhhc--
Q psy8267 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR--SSREVQTVVLTTIASLAVKRRALFVPYLK-- 321 (645)
Q Consensus 246 ~~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL~--s~~niryv~L~~l~~l~~~~p~~~~~~~~-- 321 (645)
..+-+++.+.+.+.+-+..++.+-.+-. .+ ..-+.++.++.+-|. .++++++.+|..+..++......|...+.
T Consensus 19 ~~IekATs~~l~~~Dw~~ileicD~In~-~~-~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask 96 (152)
T 3rru_A 19 HLIEKATFAGVQTEDWGQFMHICDIINT-TQ-DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKK 96 (152)
T ss_dssp HHHHHHTCSSCCSCCHHHHHHHHHHHHH-ST-THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSH
T ss_pred HHHHHHcCCCCCCccHHHHHHHHHHHhC-CC-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 4566677888888888999998887754 22 234567788887775 35678899999888888766555543222
Q ss_pred ----e-E---EE-cCCCChHHHHHHHHHHHHccC
Q psy8267 322 ----S-F---YV-RSSDPTHVKTLKLELLTTLAS 346 (645)
Q Consensus 322 ----~-f---~~-l~~d~~~Ir~~kLdlL~~L~~ 346 (645)
. + +- .++.|..||.+.|+++..-+.
T Consensus 97 ~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 97 EFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 1 1 11 123445577777776665543
No 152
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.89 E-value=1.2e+02 Score=27.68 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHH------HHHHHHHHhcC------C
Q psy8267 109 TAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHK------SYRKLCNLLVD------V 176 (645)
Q Consensus 109 ~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~------~~~kL~~~L~~------~ 176 (645)
...+.++-+.+..++...+.+..|.+-|..+|+.|+..|+.++..+....-..+|. ....|.+++.. .
T Consensus 32 ~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~ 111 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRV 111 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTS
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCC
Confidence 56677777777777766677788888999999999999998877665432233332 22344554431 2
Q ss_pred CchhHHHHHHHHHHHHhh
Q psy8267 177 DEWGQVFILNMLTRYART 194 (645)
Q Consensus 177 ~~W~Qv~iL~lL~~y~r~ 194 (645)
++=.+-++|.++......
T Consensus 112 ~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 112 SEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 344567888888887754
No 153
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=45.70 E-value=1.1e+02 Score=27.41 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHChhhhhhhHHH------HHHHHHHhcC------C
Q psy8267 109 TAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKS------YRKLCNLLVD------V 176 (645)
Q Consensus 109 ~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~ei~~~~~~li~~~------~~kL~~~L~~------~ 176 (645)
.+.+-++-+.+..|+.-.+.+..|.+-|..+|+-|+..|+.++..+.......+|.. ...|.+.+.. .
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~ 99 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWA 99 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCC
Confidence 455666777777776666677778888899999999999987776654322333332 2334444432 2
Q ss_pred CchhHHHHHHHHHHHHhh
Q psy8267 177 DEWGQVFILNMLTRYART 194 (645)
Q Consensus 177 ~~W~Qv~iL~lL~~y~r~ 194 (645)
++=.+-++|.++......
T Consensus 100 ~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 100 TGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 445577899999888754
No 154
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=45.70 E-value=25 Score=30.39 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=35.4
Q ss_pred ceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEE
Q psy8267 538 MISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSL 590 (645)
Q Consensus 538 ~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 590 (645)
.++..++++|.++.++ .++++. .+|.-+++. |++..++||+++.+.|
T Consensus 24 gg~~~l~L~N~t~~~v---AFKVKt-T~p~~YrVr--P~~G~I~Pg~~~~I~I 70 (116)
T 1m1s_A 24 GGNSTHNITSESDSRL---AFKVKS-SNNEHYRVR--PVYGFVDAKGKSKLDI 70 (116)
T ss_dssp CEEEEEEEEECSSSEE---EEEEEE-SCTTTEEEE--CSEEEECTTCEEEEEE
T ss_pred CCEEEEEEECCCCCeE---EEEEEe-cCCCceEEc--CCceEECCCCeEEEEE
Confidence 3577888889999755 666664 446677776 7778999999988555
No 155
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.61 E-value=65 Score=30.76 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=45.8
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC------------CCccccHHHHHHHHHhhcCCCChHHH
Q psy8267 40 VYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSS------------IRVPMIIPIVMLAIKDSSLDMSPYVR 107 (645)
Q Consensus 40 l~l~~~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~------------I~~~ei~~~l~~~I~~~l~d~~pyVR 107 (645)
+.+.-..+.+++-+--++-+|+|-|+++||.+.-+||..|-. |...++.+.+..-+.+ ..++-||
T Consensus 27 leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk 103 (220)
T 1dvp_A 27 LLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVR 103 (220)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHH
T ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHH
Confidence 444445555566677888899999999999999999987744 3444444444333222 3466777
Q ss_pred HHHHH
Q psy8267 108 KTAAH 112 (645)
Q Consensus 108 K~Aal 112 (645)
+++..
T Consensus 104 ~kil~ 108 (220)
T 1dvp_A 104 QKMLE 108 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 156
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.79 E-value=1.9e+02 Score=27.33 Aligned_cols=70 Identities=9% Similarity=0.013 Sum_probs=49.0
Q ss_pred HHHHhhhhhhcCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHhhcccchhh
Q psy8267 247 LLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLL-RSSREVQTVVLTTIASLAVKRRALFVP 318 (645)
Q Consensus 247 ~ll~~~~~ll~s~n~aVv~ea~~~i~~l~~~~~~~~~~~~L~~lL-~s~~niryv~L~~l~~l~~~~p~~~~~ 318 (645)
.+-+++.+.+.+.+-+..++.+..+-. .+ ..-+.++.+|.+-| +.++++++.+|..+..++..-...|..
T Consensus 9 ~ie~AT~~~~~~~dw~~~leicd~i~~-~~-~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~ 79 (220)
T 1dvp_A 9 NLENATSHLRLEPDWPSILLICDEINQ-KD-VTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHE 79 (220)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHT-TS-SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHhhcC-CC-cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHH
Confidence 444566777777888888887777653 22 23456777777766 478999999999998888755555543
No 157
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=42.44 E-value=25 Score=29.97 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=35.1
Q ss_pred ceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEE
Q psy8267 538 MISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSL 590 (645)
Q Consensus 538 ~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 590 (645)
.+...++++|.++.++ .++++. .+|..+.+. |++..++||+++.+.|
T Consensus 16 ~~~~~l~L~N~t~~~v---aFKVKt-T~p~~y~Vr--P~~G~I~P~~~~~i~I 62 (109)
T 1row_A 16 GVSSTHKLVNGGAEKI---VFKIKS-SNNNEYRIA--PVFGFVDPSGSKDVVI 62 (109)
T ss_dssp CEEEEEEEEECSSSCE---EEEEEE-SCSSSEEEE--CSEEEECTTEEEEEEE
T ss_pred CCeEEEEEEcCCCCeE---EEEEEe-CCCCceEEc--CCceEECCCCeEEEEE
Confidence 3567888999999765 666664 446677776 7778999999988555
No 158
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=38.76 E-value=40 Score=36.43 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHhCC-----CccccHHHH--HHHHHhhcCCCChHHHHHHHHHHHHHhh
Q psy8267 67 PNQLIRASALRVLSSI-----RVPMIIPIV--MLAIKDSSLDMSPYVRKTAAHAIPKLYS 119 (645)
Q Consensus 67 ~N~~iralALr~ls~I-----~~~ei~~~l--~~~I~~~l~d~~pyVRK~Aalal~kl~~ 119 (645)
.+|.+-|.|..-+|.. ++..+++.+ -..|.+++.|++|-||+.|..|+.|+..
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4677777777777654 222333332 3456677777777777777777777653
No 159
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=36.89 E-value=3.3e+02 Score=30.50 Aligned_cols=134 Identities=11% Similarity=0.072 Sum_probs=91.9
Q ss_pred cCcCCHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhhcCCc
Q psy8267 345 ASETSIASILREFQTY--ISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPE 422 (645)
Q Consensus 345 ~~~~Nv~~Il~EL~~y--l~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~~~p~ 422 (645)
.+....+.+|+-++.+ -...+..|++.-+.=++.|+...+.....|+..|++-+....+. ...+=..++.|++-.|.
T Consensus 129 Ld~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV~~F~~~~~~-~~~~H~~L~~Il~lvP~ 207 (649)
T 3tj1_A 129 IESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIKQ-TVCHHDMLKYFLRMIPS 207 (649)
T ss_dssp GCSGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHCGG
T ss_pred cCchhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCCcc-cHHHHHHHHHHHHHcCC
Confidence 3334567788888776 12457789999999999999988999999999988887654322 22344567888888998
Q ss_pred chHHHHHHHHHhhccCChHHH-----HHHHHHHHhcccccCCCchHHHHHHHHHhhcCCchHHHHH
Q psy8267 423 AYTDIIRHMVRLSDSITVPTA-----RAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQ 483 (645)
Q Consensus 423 ~~~~~i~~L~~~l~~i~~~~a-----k~~~iwilGEy~~~i~~~~~diLr~l~~~f~~e~~~vk~~ 483 (645)
....+...+.+.+.....+.. ..-++|+.+ |+. .+..+++..++++...-+-++|..
T Consensus 208 s~~~L~~iL~~~FP~~~~s~~~~~~Yv~NLLrl~~-Y~P---eL~~~Il~LIierlikiDVeiq~e 269 (649)
T 3tj1_A 208 SMGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRG-YCS---ELGFQIWSLLIEKIISIDVELQNE 269 (649)
T ss_dssp GHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHH-HCG---GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHh-hch---HHHHHHHHHHHHHHHHhhhccccc
Confidence 888888888888766544331 234567765 654 446677766666665555555443
No 160
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=36.54 E-value=3.6e+02 Score=27.53 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=15.7
Q ss_pred HHHHHhc---CCCchhHHHHHHHHHHHHh
Q psy8267 168 KLCNLLV---DVDEWGQVFILNMLTRYAR 193 (645)
Q Consensus 168 kL~~~L~---~~~~W~Qv~iL~lL~~y~r 193 (645)
.|+..|. ..|.=.|+..+.++.....
T Consensus 258 ~Lv~~L~~~~~~D~elq~~amtLIN~lL~ 286 (339)
T 3dad_A 258 NLVSILEEKNGADPELLVYTVTLINKTLA 286 (339)
T ss_dssp HHHHHHTTTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHh
Confidence 5566665 4566666666666665543
No 161
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=36.23 E-value=3.4e+02 Score=31.02 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=57.5
Q ss_pred HHHHHccCc--CCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCChhhHHHHHHHH
Q psy8267 339 ELLTTLASE--TSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413 (645)
Q Consensus 339 dlL~~L~~~--~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i 413 (645)
.++.+++.. +|++.-+.+|...+....+..+...++.+-.|+...|..+. +...++.++......+..+++..+
T Consensus 14 ~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~-vyAaLVgllN~k~pe~G~~lv~~l 89 (771)
T 1h2v_C 14 SLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLT-IYTTLVGLLNARNYNFGGEFVEAM 89 (771)
T ss_dssp HHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHcCChhHHHHHHHHH
Confidence 456677764 66778888888888777778999999999999999998855 457788999888776666665543
No 162
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2
Probab=35.92 E-value=39 Score=34.56 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=66.3
Q ss_pred EeecccccccCCCceEEEEEEeeCC-CCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEEecC--CCCCC
Q psy8267 525 ASFSRAPCLASPRMISVTLRLTNHH-GAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLND--STQPL 601 (645)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~l~~~N~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~ 601 (645)
|....-.|+|..|+ .+++.++|+- +.-|+|+++... .. +++......++++|++++.-+..+-+.+.. ...+.
T Consensus 94 YvV~~vKHiF~~hi-VlQF~~~NTL~dq~LenV~V~~~--~~-~~~~~~~~ip~~~L~~~~~g~~yv~~~~~~~~~~~~~ 169 (322)
T 1pzd_A 94 YVIRCTKHTFTDHM-VFQFDCTNTLNDQTLENVTVQME--PS-EAYEVLCYVPARSLPYNQPGTCYTLVALPKEDPTAVA 169 (322)
T ss_dssp EEEEEEEEECSSEE-EEEEEEEECCTTEEEEEEEEEEE--ES-SSCEEEEEECEEEECBTCCEEEEEEEECCSSCTTCCC
T ss_pred eEEEEEEEeccCcE-EEEEEEEEccCceEEeeEEEEEe--cC-CCceEEEEEEHhHCCCCCCeeEEEEEEecCCCCCccc
Confidence 66666666787766 5999999995 679999999888 32 246555445566999998877666666553 22222
Q ss_pred -ccE--Eeeccc---C------CCCCc--cce-EeeCCcccccccccCC
Q psy8267 602 -SPR--LVWGVE---G------EDGLS--APL-KLSAPVGEWLRAVTMS 635 (645)
Q Consensus 602 -~~~--~~~~~~---~------~~~~~--~~~-~l~~pv~~~~~~~~~~ 635 (645)
+|. +.|.+. . ++|.. +++ .+.+-++-||.|+..+
T Consensus 170 ~~f~~~LkF~vke~Dp~TGe~~deGyeDEY~lEdlel~~~D~i~p~~~~ 218 (322)
T 1pzd_A 170 CTFSCVMKFTVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMKL 218 (322)
T ss_dssp EEEEEEEEEEEEEBCTTTCCBCSCCEEEEEECCCEEECGGGGEEECCCS
T ss_pred eEEEEEEEEEEEeecCCCCCcCCCCccceEEccceeechhhEeeecccC
Confidence 222 223221 1 12222 233 4567778888886543
No 163
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=32.51 E-value=2.7e+02 Score=24.87 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHChhhhhhhHHH------HHH-HHHHhc---CC
Q psy8267 108 KTAAHAIPKLYSLDPEQKEELVLVIEKLLQ-DKTTLVVGSAVMAFEEVCPERIDMIHKS------YRK-LCNLLV---DV 176 (645)
Q Consensus 108 K~Aalal~kl~~~~p~~~~~~~~~l~~lL~-D~~~~V~~sav~~l~ei~~~~~~li~~~------~~k-L~~~L~---~~ 176 (645)
-...+.++-+.+..++...+.+..|.+-|. ..|+.|+..|+.++..+....-..+|.. ... |.+.+. ++
T Consensus 34 w~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~ 113 (157)
T 1elk_A 34 WALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNP 113 (157)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCC
Confidence 345566666777677666677778888887 5899999999988776654322333432 223 344442 23
Q ss_pred CchhHHHHHHHHHHHHhhh
Q psy8267 177 DEWGQVFILNMLTRYARTQ 195 (645)
Q Consensus 177 ~~W~Qv~iL~lL~~y~r~~ 195 (645)
.+-.+-+++.++......+
T Consensus 114 ~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 114 PTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHc
Confidence 3456779999999887653
No 164
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=32.31 E-value=52 Score=32.82 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=48.0
Q ss_pred EeecccccccCCCceEEEEEEeeCC-CCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEEec
Q psy8267 525 ASFSRAPCLASPRMISVTLRLTNHH-GAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLN 595 (645)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~l~~~N~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 595 (645)
|....-.++|..++ .+++.++|+- +.-|+|+++... .. ++.......++++|++++.-+..+-+.+.
T Consensus 47 YvV~~vKHiF~~hi-VlQF~i~NTL~dq~LenVsV~~~--~~-d~~~~~~~ipi~~L~~~~~g~~yV~l~~~ 114 (275)
T 1r4x_A 47 YVIRCTKHTFTNHM-VFQFDCTNTLNDQTLENVTVQME--PT-EAYEVLXYVPARSLPYNQPGTCYTLVALP 114 (275)
T ss_dssp EEEEEEEEECSSEE-EEEEEEEECCTTEEEEEEEEEEE--ES-SSCEEEEEECEEEECTTCCEEEEEEEECC
T ss_pred eEEEEEEEecCCcE-EEEEEeEEccCcEEEeeEEEEEE--cC-CCceEEEeeeccccCCCCCccEEEEEEcC
Confidence 65555556787666 5999999995 679999999888 32 24444434455599999887766666655
No 165
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=31.93 E-value=53 Score=28.53 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=35.6
Q ss_pred ceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEE
Q psy8267 538 MISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLN 593 (645)
Q Consensus 538 ~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 593 (645)
..+..++++|.++..+ .++++. +.|..+.+. |+...+.||+++.+.|...
T Consensus 26 ~~~~~l~l~N~s~~~v---aFKVKT-T~p~~y~Vr--P~~Gii~P~~s~~v~V~~q 75 (126)
T 1msp_A 26 KHTYHIKITNAGGRRI---GWAIKT-TNMRRLSVD--PPCGVLDPKEKVLMAVSCD 75 (126)
T ss_dssp CCCEEEEEEECSSSCE---EEEEEE-SCTTTEEEE--SCEEEECTTCEEEEEEEEC
T ss_pred ceEEEEEEECCCCCeE---EEEEEc-CCCCcEEEE--CCCeEECCCCEEEEEEEec
Confidence 4567888899998765 555552 345566666 6677999999988776544
No 166
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=30.63 E-value=2.8e+02 Score=31.95 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=74.7
Q ss_pred cccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCc---hhH-HHHHHHHHHhhcC---CChhHHHHHHHHHHHHChh
Q psy8267 85 PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP---EQK-EELVLVIEKLLQD---KTTLVVGSAVMAFEEVCPE 157 (645)
Q Consensus 85 ~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p---~~~-~~~~~~l~~lL~D---~~~~V~~sav~~l~ei~~~ 157 (645)
..+++.+.+.+..++-+++..|...+..|+..+.-+.| +.+ +...+++..-|+. ..+-=..+|+.++..+++-
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~ 413 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRF 413 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999999999999999 975 8888888888876 4555556777777777642
Q ss_pred hh--hhhHHHHHHHHHHh-cC---CCchhHHHHHHHHHHHH
Q psy8267 158 RI--DMIHKSYRKLCNLL-VD---VDEWGQVFILNMLTRYA 192 (645)
Q Consensus 158 ~~--~li~~~~~kL~~~L-~~---~~~W~Qv~iL~lL~~y~ 192 (645)
-. ..+..|+..++..+ .. .|+---...++++....
T Consensus 414 lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 414 IVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp HTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred HhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 11 11223444444432 22 34434455666666554
No 167
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.43 E-value=76 Score=26.28 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=32.4
Q ss_pred CCCceEEEEEEeeCCCCCccceEeeeCCCCCCCC--cccccCCCCcccCCCCceEEEEeEEecCC
Q psy8267 535 SPRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHG--MSMQPFPEIASIDPGLAVEVSLGLNLNDS 597 (645)
Q Consensus 535 ~~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 597 (645)
-+......++++|+++.|+ .+.......+.+ +++. |.-..++||++.. |.+.|.+.
T Consensus 24 ~g~~~~~~~~l~N~g~~p~---~~~~~~~~~~~~~~f~v~--p~~g~i~pg~~~~--i~V~f~~~ 81 (112)
T 2e6j_A 24 TGSAHCYEAILYNKGSIDA---LFNMTPPTSALGACFVFS--PKEGIIEPSGVQA--IQISFSSI 81 (112)
T ss_dssp SSCCEEEEEEEEECCSSCE---EEEECCCSSHHHHHCEEE--SSEEEECTTBCCE--EEEEECCC
T ss_pred ECCEEEEEEEEEECCcceE---EEEEecCCccccCcEEEE--CCcCEECCCCEEE--EEEEEECC
Confidence 4555678999999999876 333331011112 3332 2222899999877 44566664
No 168
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=30.14 E-value=2.5e+02 Score=26.30 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHhhc----CCcchHHHHHHHHHhhccCChH-HHHHHHHHHHhccccc
Q psy8267 404 AVVAESVVVIKNLLQT----QPEAYTDIIRHMVRLSDSITVP-TARAAILWLLGEYSHL 457 (645)
Q Consensus 404 ~v~~e~v~~i~~il~~----~p~~~~~~i~~L~~~l~~i~~~-~ak~~~iwilGEy~~~ 457 (645)
.+.+.+...+..|+++ +|.++.+++..+.+.+-+.+-| ...-+++|-+++.|..
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~ 163 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKN 163 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHH
Confidence 4666777777777765 5788889999998887655433 4577888999998864
No 169
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=29.74 E-value=52 Score=28.56 Aligned_cols=51 Identities=24% Similarity=0.381 Sum_probs=35.6
Q ss_pred CceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEE
Q psy8267 537 RMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLN 593 (645)
Q Consensus 537 ~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 593 (645)
...+..|+++|.++.++ .+.++. +.|..+.+. |+...+.||+++.+.|...
T Consensus 27 ~~~~~~l~L~N~s~~~v---aFKVKT-T~p~~y~Vr--P~~G~i~P~~s~~v~V~~~ 77 (128)
T 1z9l_A 27 DVVTTNLKLQNPSDRKV---CFKVKT-TAPRRYCVR--PNSGVIDPGSIVTVSVMLQ 77 (128)
T ss_dssp SCEEEEEEEECCSSSCE---EEEEEE-SCGGGEEEE--SCEEEECTTCEEEEEEEEC
T ss_pred ceEEEEEEEECCCCCeE---EEEEEC-CCCCceEEe--CCCcEECCCCeEEEEEEEC
Confidence 45677889999998654 555553 335566665 6667999999988666543
No 170
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=26.95 E-value=1e+02 Score=29.88 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=46.2
Q ss_pred HHhhccccHHHHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhccCChhhHHHHHHHHHHHhh
Q psy8267 358 QTYISSVDKAFVAATVQAIGKCAANI----AQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQ 418 (645)
Q Consensus 358 ~~yl~~~d~~~~~~~i~~I~~la~k~----~~~~~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~ 418 (645)
.+|+...|.+-+.+++..+..++.+- ...+..|+.++-+++..+.+++..| ..++..|+.
T Consensus 135 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E-~~Rl~~~l~ 198 (240)
T 2qc7_A 135 GEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASE-MTRIARLIE 198 (240)
T ss_dssp HHHHHSCSHHHHHHHTTHHHHHTTCSCHHHHHHHHHHHHHHHHHHHSCTTSHHHH-HHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHh
Confidence 35777777777888888887776553 2466889999999998888888888 678888885
No 171
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=26.39 E-value=56 Score=38.81 Aligned_cols=98 Identities=12% Similarity=0.008 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHHcCCCC-HHHHHHHHHHHhCC--Cc-c-ccHHHHHHHHHhhcCC---C---------ChHHHHHHHH
Q psy8267 50 QDLALLSISTFQRALKDPN-QLIRASALRVLSSI--RV-P-MIIPIVMLAIKDSSLD---M---------SPYVRKTAAH 112 (645)
Q Consensus 50 ~dl~lL~iNsl~kDL~~~N-~~iralALr~ls~I--~~-~-ei~~~l~~~I~~~l~d---~---------~pyVRK~Aal 112 (645)
++.-..+-+.+.+-|.|++ ..||-.|-.+||.+ +. + ...+.++...++.+.. . +--.|-.|++
T Consensus 838 ~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVL 917 (997)
T 1vsy_5 838 EEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVL 917 (997)
T ss_dssp TTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHH
Confidence 3333455778888899999 99999999999987 33 2 3333444444444422 1 1145667888
Q ss_pred HHHHHhhcCchhH--HHHHHHHHHhhcC--CChhHHHHH
Q psy8267 113 AIPKLYSLDPEQK--EELVLVIEKLLQD--KTTLVVGSA 147 (645)
Q Consensus 113 al~kl~~~~p~~~--~~~~~~l~~lL~D--~~~~V~~sa 147 (645)
++.-+..-.|=.+ |.|+|.+...|.. .+|+.++.+
T Consensus 918 gL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~i~~t 956 (997)
T 1vsy_5 918 GLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGMTGNA 956 (997)
T ss_dssp HHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSSHHHH
T ss_pred HHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCchHHH
Confidence 9999888877665 6787766666543 335555543
No 172
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=24.78 E-value=3.6e+02 Score=27.55 Aligned_cols=86 Identities=15% Similarity=0.254 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccH--------HHHHHHHHHhhccCChhhHHHHHHHHHHHhh
Q psy8267 347 ETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVT--------DTCLTGLVSLLSYSDEAVVAESVVVIKNLLQ 418 (645)
Q Consensus 347 ~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~--------~~~v~~ll~LL~~~~~~v~~e~v~~i~~il~ 418 (645)
..|.+....+...-+.+.++--++.+++-+|.+-..-+... ...+..++.||++....+.-|+.++++ +..
T Consensus 204 ~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK-vFV 282 (341)
T 1upk_A 204 EQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK-VFV 282 (341)
T ss_dssp HHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH-HHH
T ss_pred HHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee-eee
Q ss_pred cCCcchHHHHHHHHH
Q psy8267 419 TQPEAYTDIIRHMVR 433 (645)
Q Consensus 419 ~~p~~~~~~i~~L~~ 433 (645)
.||..-..+...|.+
T Consensus 283 ANP~K~~~I~~IL~~ 297 (341)
T 1upk_A 283 ANPNKTQPILDILLK 297 (341)
T ss_dssp HCSSCCHHHHHHHHH
T ss_pred eCCCCChHHHHHHHH
No 173
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.52 E-value=81 Score=28.11 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=35.3
Q ss_pred CceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeE
Q psy8267 537 RMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGL 592 (645)
Q Consensus 537 ~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 592 (645)
...+..|+++|.++.++ .++++. +.|..+.+. |+...+.|++++.+.|..
T Consensus 31 ~~~~~~l~L~N~s~~~V---aFKVKT-T~p~~y~Vr--P~~GiI~P~~s~~v~V~l 80 (147)
T 2cri_A 31 DVVTTNLKLQNPSDRKV---CFKVKT-TAPRRYCVR--PNSGIIDPGSIVTVSVML 80 (147)
T ss_dssp SCCCEEEEEECCSSSCE---EEEEEE-SCTTSEEEE--SSEEECCTTCEEEEEEEE
T ss_pred ceEEEEEEEECCCCCcE---EEEEEC-CCCccEEEc--CCCcEECCCCeEEEEEEE
Confidence 34566788889998654 666653 446667776 666799999998866644
No 174
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=21.58 E-value=4.1e+02 Score=23.29 Aligned_cols=108 Identities=11% Similarity=-0.010 Sum_probs=65.3
Q ss_pred HHHHHHhCCCccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy8267 74 SALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEE 153 (645)
Q Consensus 74 lALr~ls~I~~~ei~~~l~~~I~~~l~d~~pyVRK~Aalal~kl~~~~p~~~~~~~~~l~~lL~D~~~~V~~sav~~l~e 153 (645)
.|++.++.++.+++.+ +.+.+..-++|.+.-|.+..+--+.+ .| +.+++.|.+.|...|..=....+..+..
T Consensus 16 ~a~~~L~~~~~~~i~p-~lp~LL~WLQD~NWPvA~~i~~~L~~----~~---~~l~p~I~~vl~s~D~~W~ywil~~lv~ 87 (134)
T 3ut4_A 16 STIDQLCKLIDNEIEP-IIFDLLKWLQDYNWPIAKDILPVVVL----HQ---SIAMPHILTILQGNDIMWKYWVIKLMIP 87 (134)
T ss_dssp TTHHHHTTCCHHHHHH-HHHHHHGGGSCTTSTTHHHHHHHHHH----TH---HHHHHHHHHHHHSSCHHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHH-HHHHHHHHHhcCCCccHHHHHHHHHH----cc---HhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3677888887777755 56788899999998887766554443 33 3566777888888887666555544332
Q ss_pred HChh-hhhhhHHHHHHHHHHhcCC-----CchhHHHHHHHHHHHH
Q psy8267 154 VCPE-RIDMIHKSYRKLCNLLVDV-----DEWGQVFILNMLTRYA 192 (645)
Q Consensus 154 i~~~-~~~li~~~~~kL~~~L~~~-----~~W~Qv~iL~lL~~y~ 192 (645)
-.|. ....+.+-..+++ ..+ .+=.+...-++|.+|.
T Consensus 88 ~~~~~~~~~l~~eL~rl~---~~pt~~E~~eev~e~A~~iL~~~~ 129 (134)
T 3ut4_A 88 YLIYPNKQLVKSELERLS---SLEIINEDIREIVNLSKDYLHFYY 129 (134)
T ss_dssp GCCHHHHHHHHHHHHHHH---TCCCSSGGGHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHH---hCCCcchHHHHHHHHHHHHHHHHc
Confidence 2232 2222333333333 333 2223555666777775
No 175
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=21.52 E-value=5.2e+02 Score=25.08 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=57.7
Q ss_pred HHHHccCcCCHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhccCCh----hhHHHHHHHHHH
Q psy8267 340 LLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDE----AVVAESVVVIKN 415 (645)
Q Consensus 340 lL~~L~~~~Nv~~Il~EL~~yl~~~d~~~~~~~i~~I~~la~k~~~~~~~~v~~ll~LL~~~~~----~v~~e~v~~i~~ 415 (645)
+++.=-++.|++.+++.|.. +...|++++.-+++...+- .+..-..-.++..++.=|..--+ .|++++.+.|+.
T Consensus 11 Li~~~L~~~~~~~vlk~lrK-l~W~D~e~~~~l~k~l~~~-~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD~vlE~Ir~ 88 (248)
T 1uw4_B 11 LLYKDLSKVTTEKVLRQMRK-LPWQDQEVKDYVICCMINI-WNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRL 88 (248)
T ss_dssp HHHTTCSTTSHHHHHHHHHT-SCTTSHHHHHHHHHHHHCG-GGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHc-CCCCcHHHHHHHHHHhcch-hhcccchHHHHHHHHHHHHhhChHHhhhhHHHHHHHHHH
Confidence 56666678899999988776 4667888776665554322 11111112223333332322222 355566665655
Q ss_pred Hhhc-CCcchH---HHHHHHHHhhc--cCChHHHHHHHHHHHhccccc
Q psy8267 416 LLQT-QPEAYT---DIIRHMVRLSD--SITVPTARAAILWLLGEYSHL 457 (645)
Q Consensus 416 il~~-~p~~~~---~~i~~L~~~l~--~i~~~~ak~~~iwilGEy~~~ 457 (645)
=+.. .+..+. ..++-+.++.. -++++.+.- .+|.+=.||+.
T Consensus 89 gLE~n~~~~nQrRia~vkyLgELYny~lv~s~vIf~-~Ly~li~fg~~ 135 (248)
T 1uw4_B 89 GMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFR-TLYSFTSFGVN 135 (248)
T ss_dssp HHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHHHHHH-HHHHHHHTTCC
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHcCCCC
Confidence 5553 343322 22333344332 233344444 45655568874
No 176
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=20.96 E-value=1.1e+02 Score=27.49 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=35.4
Q ss_pred ceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEE
Q psy8267 538 MISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLN 593 (645)
Q Consensus 538 ~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 593 (645)
..+..|+++|.++.++ .++++. +.|..+.+. |+...+.|++++.+.|...
T Consensus 36 ~~~~~l~L~N~s~~~V---aFKVKT-T~p~~y~Vr--P~~GiI~P~~s~~V~V~lq 85 (152)
T 1wic_A 36 EKKTLIVLTNVTKNIV---AFKVRT-TAPEKYRVK--PSNSSCDPGASIDIIVSPH 85 (152)
T ss_dssp CCCEEEEEEBCSSSCE---EEEEEE-SCTTTEEEE--SSEEEECTTCEEEEEEEEC
T ss_pred eEEEEEEEEcCCCCeE---EEEEEC-CCCCceeec--CCCcEECCCCeEEEEEEec
Confidence 3456888889998544 666663 446667776 6677999999998666543
No 177
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=20.92 E-value=5.1e+02 Score=25.10 Aligned_cols=66 Identities=15% Similarity=-0.032 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhh---cCCcchHHHHHHHHHhhccC---ChHHHHHHH--HHHHhcccccCCCchHHHHHHHHHhhc
Q psy8267 407 AESVVVIKNLLQ---TQPEAYTDIIRHMVRLSDSI---TVPTARAAI--LWLLGEYSHLVPALGPDVLRKAAITFV 474 (645)
Q Consensus 407 ~e~v~~i~~il~---~~p~~~~~~i~~L~~~l~~i---~~~~ak~~~--iwilGEy~~~i~~~~~diLr~l~~~f~ 474 (645)
.+.+.+++.+++ ..|+.. .....+-+.+... +.+.+++++ +-....|+...+. .|..||.++-.|.
T Consensus 102 Sd~~laL~~ll~~~~~~p~~~-~l~~~l~~aL~~l~q~~g~~i~AGiNia~aa~~f~~~~~~-s~~~LR~lYr~~v 175 (246)
T 1xkp_A 102 SEQFXMLCGLRDALXGRPELA-HLSHLVEQALVSMAEEQGETIVLGARITPEAYRESQSGVN-PLQPLRDTYRDAV 175 (246)
T ss_dssp HHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHhcChhhhhhhhHHHHHHHHhhcccC-CHHHHHHHHHHHH
Confidence 345666777776 567543 2333332333222 336677765 7778888876665 6777777765554
No 178
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.35 E-value=2.9e+02 Score=23.20 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCceEEEEEEeeCCCCCccceEeeeCCCCCCCCcccccCCCCcccCCCCceEEEEeEEecCCCCCC---ccEEe
Q psy8267 536 PRMISVTLRLTNHHGAPLSRVRIDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQPL---SPRLV 606 (645)
Q Consensus 536 ~~~~~~~l~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~ 606 (645)
+....-.+.+.|.++.+.. |++... .-+++. |.-..|.||++.++.+ .|.+...-. .+.+.
T Consensus 40 ~~~~~~~~~l~N~g~~~~~-f~~~~~-----~~F~i~--P~~g~L~pg~~~~i~V--~F~P~~~g~~~~~l~v~ 103 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAV-FHIKTC-----RPFSIE--PAIGTLNVGESMQLEV--EFEPQSVGDHSGRLIVC 103 (122)
T ss_dssp SSCEEEEEEEECCSSSCEE-EEEECC-----TTEEEE--SSEEEECTTCEEEEEE--EECCSSSBCCCCBCEEE
T ss_pred CCeEEEEEEEEECCCCCEE-EEEecC-----CCeEEE--CCcCEECCCCEEEEEE--EEEcCCCccEEEEEEEE
Confidence 4445667788899886653 555443 135554 3334999999888544 655543322 45554
No 179
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=20.23 E-value=3.6e+02 Score=28.72 Aligned_cols=91 Identities=12% Similarity=0.027 Sum_probs=40.7
Q ss_pred hcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCC----c---cccHHHHHHHHHhhcCCCChHHHHHHHHH----
Q psy8267 45 YAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIR----V---PMIIPIVMLAIKDSSLDMSPYVRKTAAHA---- 113 (645)
Q Consensus 45 ~~~~~~dl~lL~iNsl~kDL~~~N~~iralALr~ls~I~----~---~ei~~~l~~~I~~~l~d~~pyVRK~Aala---- 113 (645)
|.+.+|.++--++..+.|=---.|..-..+-|.-+..|- . ..+...+..-+.+|+++++--|--+|..-
T Consensus 274 f~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~ 353 (449)
T 2npp_B 274 FLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNE 353 (449)
T ss_dssp HHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCH
T ss_pred HHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCH
Confidence 334455555555555544444444444444444333321 1 11233344555556666665555555432
Q ss_pred -HHHHhhcCchhH-HHHHHHHHHh
Q psy8267 114 -IPKLYSLDPEQK-EELVLVIEKL 135 (645)
Q Consensus 114 -l~kl~~~~p~~~-~~~~~~l~~l 135 (645)
+..+...+.+.+ +-+.+.+.+.
T Consensus 354 ~i~~li~~n~~~IlPii~p~L~~~ 377 (449)
T 2npp_B 354 YIMSLISDNAAKILPIMFPSLYRN 377 (449)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhchhhhHHhhHHHHHHH
Confidence 233444444432 4445544433
Done!