RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8267
(645 letters)
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region. This family
consists of the N terminal region of various alpha, beta
and gamma subunits of the AP-1, AP-2 and AP-3 adaptor
protein complexes. The adaptor protein (AP) complexes
are involved in the formation of clathrin-coated pits
and vesicles. The N-terminal region of the various
adaptor proteins (APs) is constant by comparison to the
C-terminal which is variable within members of the AP-2
family; and it has been proposed that this constant
region interacts with another uniform component of the
coated vesicles.
Length = 522
Score = 398 bits (1025), Expect = e-132
Identities = 164/490 (33%), Positives = 238/490 (48%), Gaps = 55/490 (11%)
Query: 8 YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP 67
Y++ G D S LF VVK V S + +K+L Y+YL AEE DLA+L ++ ++ L+ P
Sbjct: 31 YLIMLGEDISFLFFEVVKLVASNDFTLKRLGYLYLKLLAEESPDLAILVTNSIKKDLQSP 90
Query: 68 NQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQ-KE 126
N LIR ALR LS IRVP + + IK +D PYVRK AA AI KLY DP+ ++
Sbjct: 91 NPLIRGLALRTLSCIRVPELARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRD 150
Query: 127 ELVLVIEKLLQDKTTLVVGSAVMAFEEVC----PERIDMIHKSYRKLCNLLVDVDEWGQV 182
LV +++LL DK VV +AV E+ ++ R+LCNLL + W QV
Sbjct: 151 FLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQV 210
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
IL +LTRYA +P
Sbjct: 211 KILRLLTRYAPQDPREP------------------------------------------- 227
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAI-IAKALVRLLRSSRE-VQTV 300
+ LL++ LLQ+ N AV+ + HL P E+ + AL RLL S E ++ V
Sbjct: 228 ---KELLEDILNLLQNSNNAVLYEAVKTIIHLDPEPELIVLAVNALGRLLSSPDENLRYV 284
Query: 301 VLTTIASLAVKR-RALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQT 359
L + + K A+ L F +++ D ++ L+LL L E+++ I++E
Sbjct: 285 ALRNLNKILEKHPPAVQHLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLK 344
Query: 360 YISSV-DKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQ 418
Y+S + D F V+AIG+ A + C+ L+ LLS + VV E V VI+++++
Sbjct: 345 YVSEIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIR 404
Query: 419 TQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEED 478
PE I+ H+ L + I P ARAA LW+LGEY L+P D+LR FV E
Sbjct: 405 KYPELREYILEHLCELLEDIESPEARAAALWILGEYGELIPNSPSDLLRSILEVFVLESL 464
Query: 479 IVKLQVLNLA 488
V+L +L
Sbjct: 465 KVRLALLTAL 474
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits
[Intracellular trafficking and secretion].
Length = 757
Score = 204 bits (520), Expect = 2e-56
Identities = 142/513 (27%), Positives = 237/513 (46%), Gaps = 79/513 (15%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M+ G D S LFP V+KNV ++++E+K+L+Y+YL RYA+ + +LALL+++T Q+ L+DPN+
Sbjct: 47 MSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNE 106
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV 129
IR ALR LS +RV ++ ++ IK D YVRKTAA A+ KLY LD + EL
Sbjct: 107 EIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELG 166
Query: 130 LVIEK--LLQDKTTLVVGSAVMAFEEVCPE-----RIDMIHKSYRKLCNLLVDVDEWGQV 182
L+ L+ D +V+ +A+ + E+ PE +++I + + L EW +
Sbjct: 167 LIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLL 226
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
IL +LT T DS+ED F + + N + +
Sbjct: 227 IILEVLTERVPTT--------PDSAED-----------FEERLSPPLQHNNAEVLLIAVK 267
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVL 302
RLL L S N I + LV LL + VL
Sbjct: 268 VILRLL-----VFLPSNNLF------------------LISSPPLVTLLAKPESLIQYVL 304
Query: 303 TTIASLAVKRRALFVPYLKS-FYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYI 361
+ ++ + + +K F + +D ++K KL+ LT LA + +++ IL E YI
Sbjct: 305 RRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYI 364
Query: 362 SS--VDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDE---------------A 404
+ +D V+ ++A+G A+ + C++ L+ LL +
Sbjct: 365 AENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCIS 424
Query: 405 VVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVP---------TARAAILWLLGEYS 455
V+ SV+V++ L P+ + L +++ + T + WLLGE+S
Sbjct: 425 VIRISVLVLRILPNEYPKILLRGL---YALEETLELQSREPRAKSVTDKYLGAWLLGEFS 481
Query: 456 HLVPALGPDVLRKAAITFVNEEDIVKLQVLNLA 488
++P L P++LR A FV+E V+ +L +
Sbjct: 482 DIIPRLEPELLRIAISNFVDETLEVQYTILMSS 514
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 181 bits (460), Expect = 1e-48
Identities = 144/498 (28%), Positives = 228/498 (45%), Gaps = 74/498 (14%)
Query: 10 MAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQ 69
M GRD S LF VVK S ++E+KKLVY+Y+ A Q + ALL+++TF + + +
Sbjct: 60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSP 119
Query: 70 LIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS------LDPE 123
++RA A+R + IRV ++ + ++ + D PYVRKTAA + KL+ +
Sbjct: 120 VVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQD 179
Query: 124 QKEELVLVIEKLLQDKTTLVVGSAVMAFEEV---CPERIDMIHKSYRKLCNLLVDVDEWG 180
K++LV +LL D +V +A EV E+I+ ++ +L L + +EWG
Sbjct: 180 FKKDLV----ELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWG 235
Query: 181 QVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240
Q++IL +L ++P D E+
Sbjct: 236 QLYILELLA---------------------------AQRP-SDKESAET----------- 256
Query: 241 LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPR-------REVAIIAKALVRLLRS 293
LL P + +N AVVM ++ +LA R R + AL+ L R
Sbjct: 257 -------LLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRR 309
Query: 294 SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASI 353
E Q +V I +L V L L SFYVR SDP VK KL LL L + + I
Sbjct: 310 DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEI 369
Query: 354 LREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVI 413
L+E Y S VD FV V+AI A + V C L+ ++ E ++ + V
Sbjct: 370 LKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPE-LLPQVVTAA 428
Query: 414 KNLLQTQPEAY---TDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAA 470
K++++ PE T + + +D + A+ ++LW+LGEY + G D++++
Sbjct: 429 KDIVRKYPELLMLDTLVTDYG---ADEVVEEEAKVSLLWMLGEYCDFIEN-GKDIIQRFI 484
Query: 471 ITFVNEEDIVKLQVLNLA 488
T + E V+L +L+ A
Sbjct: 485 DTIMEHEQRVQLAILSAA 502
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1.
The three non-SMC (structural maintenance of
chromosomes) subunits of the mitotic condensation
complex are Cnd1-3. The whole complex is essential for
viability and the condensing of chromosomes in mitosis.
Length = 171
Score = 45.2 bits (108), Expect = 2e-05
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 68 NQLIRASALRVLS--SIRVPMII----PIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD 121
+ LIR +A+ L IR P ++ P + ++D PYVRKTA + L D
Sbjct: 1 DPLIRNNAVIALGDLCIRYPNLVEPYTPNLYACLRDED----PYVRKTALLVLTHLILND 56
Query: 122 PEQ-KEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVD 175
+ K +L L + K L D+ + A F E+ + K+ + NL +
Sbjct: 57 MVKVKGQLFLEMLKCLVDEDPEIRALAKSFFSEL-------LKKNPNLIYNLFPE 104
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 40.4 bits (95), Expect = 2e-04
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 60 FQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS 119
+ L DP+ +RA+A R L + P +P ++ +KD P VR+ AA A+ KL
Sbjct: 5 LEALLSDPDPEVRAAAARALGELGDPEALPALLELLKDP----DPEVRRAAAEALGKLGD 60
Query: 120 LDPEQKEELVLVIEKLLQDKTTLVV-GSAVMA 150
E + + +LLQD VV +A A
Sbjct: 61 ------PEALPALLELLQDDDDAVVRAAAASA 86
Score = 36.5 bits (85), Expect = 0.004
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 29 SKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMII 88
+ EV+ L + + ++ LKDP+ +R +A L + P +
Sbjct: 11 DPDPEVRAAAARALGELGDPE------ALPALLELLKDPDPEVRRAAAEALGKLGDPEAL 64
Query: 89 PIVMLAIKDSSLDMSPYVRKTAAHAI 114
P ++ ++D VR AA A+
Sbjct: 65 PALLELLQDDD---DAVVRAAAASAL 87
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and
conversion].
Length = 335
Score = 41.8 bits (98), Expect = 8e-04
Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 15/167 (8%)
Query: 14 RDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRA 73
A + ++K + +++ V+ V L E+ + LL L D + +R
Sbjct: 39 ELAPEAADELLKLLEDEDLLVRLSAAVALGELGSEEA-VPLLR-----ELLSDEDPRVRD 92
Query: 74 SALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD------PEQKEE 127
+A L + P +P ++ +++ D + VR AA A+ KL ++E
Sbjct: 93 AAADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERALDPLLEALQDE 149
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLV 174
L V +A A E+ + + + V
Sbjct: 150 DSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADV 196
Score = 29.5 bits (66), Expect = 6.5
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 31 NIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPI 90
LA + +LA + + L+D + L+R SA L + +P
Sbjct: 19 YGSEAAAALQALAELDDLILELAPEAADELLKLLEDEDLLVRLSAAVALGELGSEEAVP- 77
Query: 91 VMLAIKDSSLDMSPYVRKTAAHAI 114
+++ D P VR AA A+
Sbjct: 78 ---LLRELLSDEDPRVRDAAADAL 98
>gnl|CDD|236876 PRK11191, PRK11191, RNase E inhibitor protein; Provisional.
Length = 138
Score = 31.1 bits (71), Expect = 0.71
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 22/79 (27%)
Query: 145 GSAVMAFEEV--CPERIDMIHKSYRKLCNLL----VDVDEWGQVFILNMLTRYARTQFTD 198
G + + V ++I +L L V+ D WG T F D
Sbjct: 71 GDVIFCCDAVSEVALNAELIDAQVEQLLALAEKFDVEYDGWG-------------TYFED 117
Query: 199 PNLNENDSSEDDDDLDGED 217
PN + D D+D +D +D
Sbjct: 118 PNAEDGD---DEDFVDEDD 133
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 30.7 bits (70), Expect = 0.72
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 394 LVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIR-----HMVRLSDSITVPTARAAIL 448
LVSLLS SDE V E+ + NL + ++ +V+L S A L
Sbjct: 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAAL 70
Query: 449 WLLGEYSHLVPALGPDVLRKAAITFVNE 476
W L + VL + +
Sbjct: 71 WALRNLAAGPEDNKLIVLEAGGVPKLVN 98
Score = 28.0 bits (63), Expect = 6.4
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 254 PLLQSRNAAVVMAVAQLFHHLAPRREVAIIA-------KALVRLLRSSR-EVQTVVLTTI 305
LL S + V A +L+ I A ALV+LL+S EV L +
Sbjct: 14 SLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWAL 73
Query: 306 ASLA 309
+LA
Sbjct: 74 RNLA 77
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 30.3 bits (69), Expect = 0.85
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 112 HAIPKLYSLDPEQKEELVLVIEKL-LQDKTTLVVGSAVMAFEEVCPERIDMIH 163
+ + +LYS+DP E + K L D+ L+ G ++ A + ID++
Sbjct: 21 NGLGRLYSIDPWPGAEAGANLRKAGLADRVRLLRGDSLEALARLPDGSIDLLF 73
>gnl|CDD|219523 pfam07697, 7TMR-HDED, 7TM-HD extracellular. This entry represents
the extracellular domain of the 7TM-HD (7TM Receptors
with HD hydrolase).
Length = 218
Score = 31.5 bits (72), Expect = 0.97
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 107 RKTAAHAIPKLYSLDPEQKEELVLVIEKLLQ 137
RK AA ++P +Y +DPE + L I L
Sbjct: 29 RKEAAESVPPVYDIDPEVTQNLEEEINSLFD 59
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 31.7 bits (72), Expect = 1.5
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 60 FQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS 119
F AL DP+ +R A+R L S+ + ++ ++ D + VR A + L +
Sbjct: 719 FAAALGDPDHRVRIEAVRALVSVD-------DVESVAGAATDENREVRIAVAKGLATLGA 771
Query: 120 LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEV-CPERID 160
+ + L D LV +A+ A E+ CP
Sbjct: 772 GGAPAGD----AVRALTGDPDPLVRAAALAALAELGCPPDDV 809
Score = 29.4 bits (66), Expect = 7.0
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 63 ALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP 122
AL+ +R A R L+ + +P ++ A+ D LD VRK A A+ + + DP
Sbjct: 815 ALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLD----VRKAAVLALTR-WPGDP 869
Query: 123 EQKEEL 128
++ L
Sbjct: 870 AARDAL 875
>gnl|CDD|132845 cd07206, Pat_TGL3-4-5_SDP1, Triacylglycerol lipase 3, 4, and 5 and
Sugar-Dependent 1 lipase. Triacylglycerol lipases are
involved in triacylglycerol mobilization and
degradation; they are found in lipid particles. TGL4 is
30% homologus to TGL3, whereas TGL5 is 26% homologus to
TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like
acyl-hydrolase domain that initiates the breakdown of
storage oil in germinating Arabidopsis seeds. This
family includes subfamilies of proteins: TGL3, TGL4,
TGL5, and SDP1.
Length = 298
Score = 30.6 bits (70), Expect = 2.1
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 63 ALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPY 105
AL PN LI SA VL+S VP + P VML K+ ++ PY
Sbjct: 157 ALTSPNVLIW-SA--VLASCAVPGVFPPVMLMAKNRDGEIVPY 196
>gnl|CDD|225618 COG3076, COG3076, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 135
Score = 29.4 bits (66), Expect = 2.6
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 19/76 (25%)
Query: 145 GSAVMAFEEV--CPERIDMIHKSYRKLCNLL----VDVDEWGQVFILNMLTRYARTQFTD 198
G V+ + + ++I +L L V+ D WG T F D
Sbjct: 68 GDIVICCDIISEVALNAELIDAQVEQLMPLAEKFDVEYDGWG-------------TYFED 114
Query: 199 PNLNENDSSEDDDDLD 214
PN ++D ED D+ D
Sbjct: 115 PNAEDDDDDEDVDEDD 130
>gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family,
Rod-derived cone viability factor (RdCVF) subfamily;
RdCVF is a thioredoxin (TRX)-like protein specifically
expressed in photoreceptors. RdCVF was isolated and
identified as a factor that supports cone survival in
retinal cultures. Cone photoreceptor loss is responsible
for the visual handicap resulting from the inherited
disease, retinitis pigmentosa. RdCVF shows 33%
similarity to TRX but does not exhibit any detectable
thiol oxidoreductase activity.
Length = 146
Score = 29.0 bits (65), Expect = 3.7
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 292 RSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHV---KTLKLELLTTLASET 348
+R V+L ++ + LF P LK F+VR +D +V L L ++ SE
Sbjct: 19 IVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ 78
Query: 349 SIASILRE 356
S L++
Sbjct: 79 QQESFLKD 86
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.1 bits (68), Expect = 4.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 119 SLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159
+LD E+ E+L ++E+LL D +++ S V +E RI
Sbjct: 853 TLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRI 893
>gnl|CDD|214472 smart00017, OSTEO, Osteopontin. Osteopontin is an acidic
phosphorylated glycoprotein of about 40 Kd which is
abundant in the mineral matrix of bones and which binds
tightly to hydroxyapatite. It is suggested that
osteopontin might function as a cell attachment factor
and could play a key role in the adhesion of osteoclasts
to the mineral matrix of bone.
Length = 287
Score = 29.2 bits (65), Expect = 7.0
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 202 NENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDH 245
N+S E DDLD +D DD+ D N++ D D
Sbjct: 61 KSNESHEHTDDLDDDD-----DDDHVDDRDNDSDDAEDSDDSDE 99
>gnl|CDD|221603 pfam12496, BNIP2, Bcl2-/adenovirus E1B nineteen kDa-interacting
protein 2. This domain family is found in eukaryotes,
and is typically between 119 and 133 amino acids in
length. There is a conserved HGGY sequence motif. This
family is Bcl2-/adenovirus E1B nineteen kDa-interacting
protein 2. It interacts with pro- and anti- apoptotic
molecules in the cell.
Length = 126
Score = 27.7 bits (62), Expect = 8.3
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 198 DPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240
D N+++ D+ +D D LD + ++D+T K + ++
Sbjct: 36 DINVDDLDTPDDSDSLDFPGNELEWEDDT---PKAKAAESPPA 75
>gnl|CDD|214863 smart00859, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding
domain. The semialdehyde dehydrogenase family is found
in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC),
which is involved in arginine biosynthesis, and
aspartate-semialdehyde dehydrogenase, an enzyme involved
in the biosynthesis of various amino acids from
aspartate. This family is also found in yeast and fungal
Arg5,6 protein, which is cleaved into the enzymes
N-acety-gamma-glutamyl-phosphate reductase and
acetylglutamate kinase. These are also involved in
arginine biosynthesis. All proteins in this entry
contain a NAD binding region of semialdehyde
dehydrogenase.
Length = 123
Score = 27.9 bits (63), Expect = 8.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 287 LVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLK 337
L+RLL + + L + A K+ + P+LK V DP + L
Sbjct: 15 LLRLLAEHPDFELTALAASSRSAGKKVSEAGPHLKGEVVLELDPPDFEELA 65
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 29.0 bits (65), Expect = 8.7
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 199 PNLNENDSSEDDDDLDGEDKKPFYDDETTRD 229
P ++D DD+D D + F DE
Sbjct: 423 PPFPDDDDEGDDEDDDDWEDLGFDLDEDDVY 453
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 28.1 bits (64), Expect = 8.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 119 SLDPEQKEELVLVIEKLLQDKTTLVV 144
+LDPE + ++ + L + KT +V+
Sbjct: 126 ALDPETEALILEALRALAKGKTVIVI 151
>gnl|CDD|216222 pfam00972, Flavi_NS5, Flavivirus RNA-directed RNA polymerase.
Flaviviruses produce a polyprotein from the ssRNA
genome. This protein is also known as NS5. This
RNA-directed RNA polymerase possesses a number of short
regions and motifs homologous to other RNA-directed RNA
polymerases.
Length = 649
Score = 29.0 bits (65), Expect = 9.1
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 212 DLDGEDKKPFYDDET----TR----DTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAV 263
D+ +D Y D+T TR D ++E + +DP+H+ L A +++
Sbjct: 271 DIAKKDGGLMYADDTAGWDTRITEEDLEDE-EAILEYMDPEHKQL---AAAIMELTYQNK 326
Query: 264 VMAVAQLFHHLAPRREVAIIAKALVRL-LRSSREVQTVVLTTIASLAVK 311
V+ V + P + + R R S +V T L T ++ V+
Sbjct: 327 VVKVPR------PAPGGKTVMDVISRRDQRGSGQVVTYALNTFTNMKVQ 369
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 28.6 bits (65), Expect = 9.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 120 LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159
LDPE E++ V++ L ++ T+++ + M F +R+
Sbjct: 167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRV 206
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.370
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,461,752
Number of extensions: 3249684
Number of successful extensions: 3332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3306
Number of HSP's successfully gapped: 48
Length of query: 645
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 542
Effective length of database: 6,369,140
Effective search space: 3452073880
Effective search space used: 3452073880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)