RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8267
(645 letters)
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 418 bits (1076), Expect = e-139
Identities = 147/497 (29%), Positives = 242/497 (48%), Gaps = 63/497 (12%)
Query: 8 YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP 67
M G+D S LFP VV + + N+E+KKLVY+YL YA+ Q D+A++++++F + +DP
Sbjct: 39 AAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDP 98
Query: 68 NQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE--QK 125
N LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ + +
Sbjct: 99 NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED 158
Query: 126 EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWG 180
+ + + L+ D +VV +AV A E+ +D+ ++ KL L + EWG
Sbjct: 159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWG 218
Query: 181 QVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240
Q+FIL+ L+ Y
Sbjct: 219 QIFILDCLSNYNPKD--------------------------------------------- 233
Query: 241 LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP---------RREVAIIAKALVRLL 291
D + + + + P L N+AVV++ ++ + +A LV LL
Sbjct: 234 -DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL 292
Query: 292 RSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIA 351
EVQ V L I + KR + +K F+V+ +DP +VK KL+++ LAS+ +IA
Sbjct: 293 SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIA 352
Query: 352 SILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVV 411
+L E + Y + VD FV V+AIG+CA + Q + C++ L+ L+ VV E++V
Sbjct: 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIV 412
Query: 412 VIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAI 471
VI+++ + P Y II + DS+ P ARAA++W++GEY+ + ++L
Sbjct: 413 VIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-ADELLESFLE 471
Query: 472 TFVNEEDIVKLQVLNLA 488
F +E V+L +L
Sbjct: 472 GFHDESTQVQLTLLTAI 488
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 244 bits (625), Expect = 1e-72
Identities = 85/498 (17%), Positives = 173/498 (34%), Gaps = 64/498 (12%)
Query: 8 YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP 67
YM G A +K + S+ K++ Y+ +E+QD+ LL + + L
Sbjct: 60 YMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHS 119
Query: 68 NQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEE 127
Q ++ AL L + + + ++ + Y+RK AA + PE E
Sbjct: 120 TQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEM 179
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVC---PERIDMIHKSYRKLCNLLVDV-------- 176
+ + LL +K V+ ++V+ E+C P+ + K +L +L ++
Sbjct: 180 FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPE 239
Query: 177 -------DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRD 229
D + QV IL +L R D + +E
Sbjct: 240 HDVSGISDPFLQVRILRLLRILGR---NDDDSSEA------------------------- 271
Query: 230 TKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVR 289
++ + N + NA + V + + + L R
Sbjct: 272 -----------MNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGR 320
Query: 290 LLRSSR-EVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTH-VKTLKLELLTTLASE 347
L ++ ++ V LT++ + + D +K +EL L +
Sbjct: 321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG 380
Query: 348 TSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVA 407
+I +++E ++ S + F A I A A + ++ +L+ + V
Sbjct: 381 NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRD 440
Query: 408 ESVVVIKNLLQTQPEAYTDIIRHMVRL--SDSITVPTARAAILWLLGEYSHLVPALGPDV 465
++V + L+ E + ++ + + D P + A W +GEY L+ +
Sbjct: 441 DAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAA-WCIGEYGDLL--VSGQC 497
Query: 466 LRKAAITFVNEEDIVKLQ 483
+ I +E + L+
Sbjct: 498 EEEEPIQVTEDEVLDILE 515
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 203 bits (517), Expect = 3e-57
Identities = 64/483 (13%), Positives = 149/483 (30%), Gaps = 63/483 (13%)
Query: 7 CYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKD 66
++ G D V + S K++ Y++++ +L L + + L
Sbjct: 63 LFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLAS 122
Query: 67 PNQLIRASALRVLSSIRVPMIIPIVMLAIKD--SSLDMSPYVRKTAAHAIPKLYSLDPE- 123
N AL ++++ + I + D V+++AA + +LY P+
Sbjct: 123 RNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL 182
Query: 124 -QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC-----------PERIDMIHK------S 165
+ + LL D+ VV +A + + + + +
Sbjct: 183 VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSAST 242
Query: 166 YRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDE 225
+ W V +L +L Y P +D
Sbjct: 243 DLQDYTYYFVPAPWLSVKLLRLLQCY----------------------------PPPEDP 274
Query: 226 TTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNA--AVVMAVAQLFHHLAPRREVA-- 281
R E + ++ +Q NA AV+ L H +
Sbjct: 275 AVRGRLTECLE-----TILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR 329
Query: 282 IIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPY----LKSFYVRSSDPTHVKTLK 337
+ L ++ + L ++ +LA + +++ V+
Sbjct: 330 ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRA 389
Query: 338 LELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSL 397
++LL + ++ I+ E +Y+ + D + V + A A + +++L
Sbjct: 390 VDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNL 449
Query: 398 LSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVR-LSDSITVPTARAAILWLLGEYSH 456
+ + + V E + ++ + + + + L ++LGE+ +
Sbjct: 450 IRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGN 509
Query: 457 LVP 459
L+
Sbjct: 510 LIA 512
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 129 bits (325), Expect = 5e-33
Identities = 50/349 (14%), Positives = 112/349 (32%), Gaps = 56/349 (16%)
Query: 8 YMMAKGRD-----ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQR 62
Y++ +G A++ F A+ K S + ++++ Y+ + + + ++ S+ +
Sbjct: 53 YLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVIIVTSSLTK 111
Query: 63 ALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP 122
+ R A+R L I ++ + +K + +D P V +A + L
Sbjct: 112 DMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF 171
Query: 123 EQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQV 182
+ + V ++ +V A+ V + K K + +
Sbjct: 172 DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGL-KSPFAYC 230
Query: 183 FILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELD 242
++ + +R L + D S D
Sbjct: 231 MMIRVASRQ---------LEDEDGSRDSP------------------------------- 250
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHL--APRREVAIIAKALVRLLRSSR-EVQT 299
L + L++++ VV A +L +E+A L S + ++
Sbjct: 251 -----LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRY 305
Query: 300 VVLTTIASLAVKRRALFVPYLKSFYVRSSDPTH-VKTLKLELLTTLASE 347
+ T+ +A+K + +D + TL + L SE
Sbjct: 306 AAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354
Score = 30.8 bits (69), Expect = 1.3
Identities = 31/213 (14%), Positives = 66/213 (30%), Gaps = 8/213 (3%)
Query: 246 RLLLKNAKPLLQSRNAAV----VMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVV 301
+ + + K + + +V +++ L + + +A + VQ
Sbjct: 138 QAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHA 196
Query: 302 LTTIASLAVKRRALFVPYLKSFYVRS--SDPTHVKTLKLELLTTLASETSIASILREF-Q 358
L + + R + F S + +++ + S S L +F +
Sbjct: 197 LGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIE 256
Query: 359 TYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQ 418
+ + + + V AI A+ ++ L S A+ +V + +
Sbjct: 257 SCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316
Query: 419 TQPEAYTDIIRHMVRLSDSITVPTARAAILWLL 451
P A T + L A AI LL
Sbjct: 317 KHPSAVTACNLDLENLVTDANRSIATLAITTLL 349
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 6e-11
Identities = 73/492 (14%), Positives = 138/492 (28%), Gaps = 175/492 (35%)
Query: 14 RDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSI------STFQRALKDP 67
+D D+ K+++SK E+ + + L L Q+ +++
Sbjct: 36 KDVQDM----PKSILSKE-EIDHI----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE- 85
Query: 68 NQLIRASALR-----VLSSIRVPMIIPIVMLAIKDSSLDMSPYV-RKTAAHAIPKLYSLD 121
LR ++S I+ P S+ Y+ ++ + ++++
Sbjct: 86 -------VLRINYKFLMSPIKTEQRQP---------SMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 122 PEQKEELVLVI-EKLLQDKTT--LVV------GSAVMAFEEVCPERIDMIHKSYRKLCNL 172
+ + L + + LL+ + +++ G +A + VC SY+ C +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-VC--------LSYKVQCKM 180
Query: 173 LVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKN 232
++F LN+ P
Sbjct: 181 D------FKIFWLNL---------------------------KNCNSP------------ 195
Query: 233 ETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLR 292
T L+ +LL + + H + + I L RLL+
Sbjct: 196 -----ETVLEMLQKLLYQIDPNWTS-----------RSDHSSNIKLRIHSIQAELRRLLK 239
Query: 293 SSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLE---LLTTLASETS 349
S L V L + V+ + L LLTT
Sbjct: 240 SKP---------------YENCLLV--LLN--VQ--NAKAWNAFNLSCKILLTT--RFKQ 276
Query: 350 IASILREFQTYISSVD---KAFVAA-TVQAIGKCAANIAQVTD----TCLTG--LVSLLS 399
+ L T S+D + K Q D T +S+++
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSIIA 334
Query: 400 YSDEAVVAESVVVIKNLLQTQPEAYTDII------------RHM-VRLS---DSITVPTA 443
+ + + N + T II R M RLS S +PT
Sbjct: 335 ----ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 444 RAAILWLLGEYS 455
+++W S
Sbjct: 391 LLSLIWFDVIKS 402
Score = 49.1 bits (116), Expect = 4e-06
Identities = 66/474 (13%), Positives = 129/474 (27%), Gaps = 136/474 (28%)
Query: 198 DPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQ 257
D E+ D ED F D+ +D ++ + ++ + DH ++ + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSG 63
Query: 258 SRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFV 317
+ +LF L ++E ++ K + +LR + + + T +++
Sbjct: 64 TL---------RLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 318 PYLKSFY--VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQ- 374
Y + +V +L+ L L E + V +
Sbjct: 114 EQRDRLYNDNQVFAKYNVS--RLQPYLKL------RQALLELR------PAKNV--LIDG 157
Query: 375 --AIGKCAANIAQVTDTCLTGLVSLLSYSDEAVV-----------------AESVVVIKN 415
GK T + V V E+V+ +
Sbjct: 158 VLGSGK----------TWVALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 416 LLQTQPEA-YTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFV 474
L Q + +T H + I A L Y + L VL V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CL--LVLLN-----V 253
Query: 475 NEEDIVKL-----QVLNLAPVEAAGITTLPPAFTSPRYTEVLNKIGGGRG---------- 519
++L +TT R+ +V + +
Sbjct: 254 QNAKAWNAFNLSCKIL---------LTT--------RFKQVTDFLSAATTTHISLDHHSM 296
Query: 520 ------MLSALASF--------SRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGSSL 565
+ S L + R +PR +S+ A + L
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNCDKL 355
Query: 566 GHGMSMQPFPEIASIDPGLAVE--VSLGL---NLNDSTQPLSPRLVWG-VEGED 613
+ + ++P + L + + + T LS L+W V D
Sbjct: 356 TTIIESS----LNVLEPAEYRKMFDRLSVFPPSAHIPTILLS--LIWFDVIKSD 403
Score = 44.8 bits (105), Expect = 1e-04
Identities = 69/423 (16%), Positives = 126/423 (29%), Gaps = 132/423 (31%)
Query: 55 LSISTFQRALKD-------PNQLIRASALRVLSSIRVPMIIPI------VMLAIKDSSL- 100
L I + Q L+ N L+ VL +++ ++L + +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLL------VLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 101 DMSPYVRKTAAHAIPKLYSLDPEQKEELVL-VIEKLLQDKTTLVVGSAVMAFEEVC---P 156
D T +L P++ + L+L ++ QD L EV P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LP--------REVLTTNP 327
Query: 157 ERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGE 216
R+ +I +S R D W V + T + +LN L+
Sbjct: 328 RRLSIIAESIRDGLATW---DNWKHVNCDKL------TTIIESSLNV---------LEPA 369
Query: 217 DKKPFYDD-----------ETT------RDTKNETSQVSTELDPDHR--LLLKNAKPLLQ 257
+ + +D K++ V +L H+ L+ K K
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTI 426
Query: 258 SRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRR---- 313
S + + L + + + + +
Sbjct: 427 S------------IPSI------------YLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 314 ALFVPYLKS-FY------VRSSDPTHVKTL-------------KLELLTT-LASETSIAS 352
L PYL FY +++ + TL K+ +T + SI +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 353 ILREFQTY---ISSVDKAF---VAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVV 406
L++ + Y I D + V A + + K N+ T L + L DEA+
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA--LMAEDEAIF 580
Query: 407 AES 409
E+
Sbjct: 581 EEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 5e-10
Identities = 72/406 (17%), Positives = 124/406 (30%), Gaps = 168/406 (41%)
Query: 320 LKSF---YVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISS-------VDKAFV 369
L F Y+ +D H L +LL ++T++ + YI++ DK
Sbjct: 88 LTEFENCYLEGND-IH--ALAAKLLQE--NDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 370 AATVQAIGKCAANIA-----Q-VTDTCLTGLVSLLSYSD-EAVVAESVVVIKNLLQTQPE 422
+A +A+G+ A + Q TD L L Y +V + + L
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL--YQTYHVLVGDLIKFSAETLSELIR 200
Query: 423 AYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDV--LRKAAITFVNEEDIV 480
D + + + + + WL P+ PD L I+ I
Sbjct: 201 TTLDAEKV---FTQGLNI------LEWLEN------PSNTPDKDYLLSIPISCPL---IG 242
Query: 481 KLQVLN-LAPVEAAGITTLPPAFTSPRYTEVLNKIGG----GRGMLSALA--------SF 527
+Q+ + + + G T P E+ + + G +G+++A+A SF
Sbjct: 243 VIQLAHYVVTAKLLGFT---PG-------ELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 528 SRA-------------------PCLA-----------------SPRMISVT--------- 542
+ P + SP M+S++
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-MLSISNLTQEQVQD 351
Query: 543 -LRLTNHHGAPLSRVRIDSEGSSL----------GHGMSMQPFPEIASIDPGLAVEVSL- 590
+ TN H +V I SL G P+ SL
Sbjct: 352 YVNKTNSHLPAGKQVEI-----SLVNGAKNLVVSGP-------PQ------------SLY 387
Query: 591 GLNLN----------DSTQ-PLSPR-LVWGVEGEDGLSAPLKLSAP 624
GLNL D ++ P S R L + L +++P
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-------LPVASP 426
Score = 47.0 bits (111), Expect = 2e-05
Identities = 48/276 (17%), Positives = 72/276 (26%), Gaps = 109/276 (39%)
Query: 349 SIASILREFQTYISSVDKAFVAATVQAIGKCAAN-IAQVTDTCLTGLVSLLSYSDEAVVA 407
SI I+ ++ F + I N A + +T + G + E
Sbjct: 1660 SILDIVINNPVNLTIH---FGGEKGKRI---RENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 408 ESVVVI---KNLLQ----TQPEAYTDIIRHMVRLSDSITVPTARAAILWL---------- 450
+ K LL TQP A + A
Sbjct: 1714 STSYTFRSEKGLLSATQFTQP-A-------LT---------LMEKAAFEDLKSKGLIPAD 1756
Query: 451 -------LGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVLNLAPVEAAGITTLPPAFT 503
LGEY+ L +L DV+ + E +V++ V
Sbjct: 1757 ATFAGHSLGEYAALA-SLA-DVM-----SI---ESLVEV-V------------------- 1786
Query: 504 SPRYTEVLNKIGGGRGMLSALASFSRAPCLASPRMISVTLRLTNHHGAPLSRVRIDSEGS 563
Y RGM +A ++ MI++ P RV
Sbjct: 1787 --FY----------RGMTMQVAVPRDELGRSNYGMIAI---------NP-GRVAASFSQE 1824
Query: 564 SLGHGMSMQPFPEIASIDPGLAVEVSLGLNLNDSTQ 599
+L Q E G VE+ N N Q
Sbjct: 1825 AL------QYVVERVGKRTGWLVEIV---NYNVENQ 1851
Score = 42.0 bits (98), Expect = 6e-04
Identities = 55/317 (17%), Positives = 90/317 (28%), Gaps = 111/317 (35%)
Query: 6 CCYM-MAK--GRDASDLFP------AVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLS 56
Y+ AK G +L + +V+ V + E +
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA-------VAIAETDSWESFFVSVRKA 299
Query: 57 IST-F------QRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLD-MSPYVRK 108
I+ F A PN + S L S+ +P ML+I + + + + YV K
Sbjct: 300 ITVLFFIGVRCYEAY--PNTSLPPSILE--DSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 109 TAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVV-GSAVMAFEEVCPERIDMIHKSYR 167
T +H L ++ E+ LV LVV G P+ S
Sbjct: 356 TNSH-------LPAGKQVEISLVN-----GAKNLVVSGP---------PQ-------SLY 387
Query: 168 KLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETT 227
L L R L+++ + PF +
Sbjct: 388 GLNLTL-------------------RKAKAPSGLDQS-------------RIPF----SE 411
Query: 228 RDTKNETS--QVSTELDPDHRLLLKNAKPLLQSR--NAAVVMAVAQL----FH-----HL 274
R K V++ P H LL A L+ V + + L
Sbjct: 412 RKLKFSNRFLPVAS---PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 275 APRREVAIIAKALVRLL 291
R I++ +V +
Sbjct: 469 --RVLSGSISERIVDCI 483
Score = 34.6 bits (79), Expect = 0.11
Identities = 33/159 (20%), Positives = 46/159 (28%), Gaps = 55/159 (34%)
Query: 517 GRGM-L---SALAS--FSRA-PCLASPRMISVT-------LRLTNHHGAPLSR-VR---- 557
G GM L S A ++RA S+ + LT H G + +R
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 558 -IDSEGSSLGHGMSMQPFPEIASIDPGLAVEVSLG-LNLNDSTQPLSPRLV--------- 606
+ E G + + F EI G L+ TQ P L
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ---PALTLMEKAAFED 1746
Query: 607 ---WGVEGED----GLSAPLKLSAPVGEWLRAVTMSTAL 638
G+ D G S +GE+ AL
Sbjct: 1747 LKSKGLIPADATFAGHS--------LGEY-------AAL 1770
Score = 33.1 bits (75), Expect = 0.38
Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 81/219 (36%)
Query: 2 AKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLA-RYAEEQQDLALLSISTF 60
+G M G D ++V ++ A + ++ ++L I
Sbjct: 1628 EQG-----M--GMDLYKTSK-AAQDVWNR------------ADNHFKDTYGFSILDIVI- 1666
Query: 61 QRALKDPNQLI------RASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAI 114
+P L + +R I ++ +D K
Sbjct: 1667 ----NNPVNLTIHFGGEKGKRIREN-----------YSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 115 PKLYSLDPE-QKEEL---------VLVIE----KLLQDKTTLV---------VG--SA-- 147
S +K L + ++E + L+ K + +G +A
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA 1771
Query: 148 ----VMAFEEVCPERIDMIHKSYR-KLCNLLVDVDEWGQ 181
VM+ E + ++++ YR + V DE G+
Sbjct: 1772 SLADVMSIESL----VEVVF--YRGMTMQVAVPRDELGR 1804
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 54.3 bits (130), Expect = 8e-08
Identities = 52/384 (13%), Positives = 110/384 (28%), Gaps = 49/384 (12%)
Query: 7 CYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAE--EQQDLALLSISTFQRAL 64
CY ++L V++ L +A+ E ++ I F
Sbjct: 153 CYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA 212
Query: 65 KDPNQLIRASALRVLSSI----RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL 120
D +R A+ +I + +VM ++ ++ D S VR A +L
Sbjct: 213 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA 272
Query: 121 DPEQ--KEELVLVIEKLLQDKTTLVVGSAVMAFEEVC------PERIDMIHKSYRKLCNL 172
+ K +LV + L++D V +A +E C ++ + + L
Sbjct: 273 VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332
Query: 173 LVDVDE-------WGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDE 225
+ D ++ + + +L + + P E +
Sbjct: 333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN------ 386
Query: 226 TTRDTKNETSQVSTELDPDHRL--LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAII 283
V+ + LL L + V +A+ + LA + V
Sbjct: 387 --------LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF 438
Query: 284 AKALVRLLR-----SSREVQTVVLTTIASLAVK-----RRALFVPYLKSFYVRSSDPTHV 333
+ L L ++ + + L K A +P + + +
Sbjct: 439 DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY--LH 496
Query: 334 KTLKLELLTTLASETSIASILREF 357
+ L + L+ +
Sbjct: 497 RMTTLFCINVLSEVCGQDITTKHM 520
Score = 49.2 bits (117), Expect = 4e-06
Identities = 64/488 (13%), Positives = 139/488 (28%), Gaps = 48/488 (9%)
Query: 16 ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEE--QQDLALLSISTFQRALKDPNQLIRA 73
L P + + V+ L + E DL + +R R
Sbjct: 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 144
Query: 74 SALRVLSSIRV---PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL--DPEQKEEL 128
SA + S + + ++ D +P VR+ AA + + + K E+
Sbjct: 145 SACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI 204
Query: 129 VLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSY--RKLCNLLVDVDEWGQVFILN 186
+ + L D+ V AV A + ++ L D
Sbjct: 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWR------- 257
Query: 187 MLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTEL----- 241
RY L + E + D + +V
Sbjct: 258 --VRYMVAD-KFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314
Query: 242 DPDHRLLLKNAKP----LLQSRNAAVVMAVAQLFHHLAP----RREVAIIAKALVRLLR- 292
D +++ P L+ N V A+A + L+P + + + L+
Sbjct: 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKD 374
Query: 293 SSREVQTVVLTTIASLA-----VKRRALFVPYLKSFYVRSSDPTHVKTLKL--ELLTTLA 345
EV+ +++ + + + +P + + + ++ L L
Sbjct: 375 ECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG 434
Query: 346 SETSIASILREFQTYISSVDKAFVAATVQAIGKCAANI--AQVTDTCLTGLVSLLSYSDE 403
E + ++ A A + K T + ++++ +
Sbjct: 435 VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY 494
Query: 404 AVVAESVVVIKNLLQTQPEAYT--DIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPAL 461
++ I L + + T ++ ++R++ V R + L + + P L
Sbjct: 495 LHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD-PVANVRFNVAKSLQK---IGPIL 550
Query: 462 GPDVLRKA 469
L+
Sbjct: 551 DNSTLQSE 558
Score = 37.7 bits (87), Expect = 0.012
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 57 ISTFQRALKDPNQLIRASALRVLSSI--------RVPMIIPIVMLAIKDSSLDMSPYVRK 108
+ T R DP +R + + L I + PI+ +D +D V+
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVD----VKY 576
Query: 109 TAAHAIPKL 117
A A+ L
Sbjct: 577 FAQEALTVL 585
Score = 33.8 bits (77), Expect = 0.20
Identities = 58/430 (13%), Positives = 124/430 (28%), Gaps = 87/430 (20%)
Query: 88 IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS-LDPEQ-KEELVLVIEKLLQDKTTLVVG 145
I +++ +++ +R + + + L E+ + EL+ + + D+ V+
Sbjct: 12 IAVLIDELRNED----VQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLL 66
Query: 146 SAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNEND 205
+ LV E+ + P L
Sbjct: 67 ALAEQLGTFTT----------------LVGGPEYVHCLL--------------PPLESLA 96
Query: 206 SSEDDDDLDGEDKKPFYDDETTRDTKNET-SQVSTELDPDH--RLLLKNAKPLLQSRNAA 262
+ E + RD E+ +S E P + K L
Sbjct: 97 TVE---------------ETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFT 141
Query: 263 VVMAVAQLFHHLAPR---REVAIIAKALVRLLR-SSREVQTVVLTTIASLAVKRRALFVP 318
+ LF PR A + + L + V+ + + A + L +
Sbjct: 142 SRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFA---KVLELD 198
Query: 319 YLKS-----FYVRSSDPT-HVKTLKLELLTTLAS----ETSIASILREFQTYISSVDKAF 368
+KS F +SD V+ L +E +A E A ++ +
Sbjct: 199 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRV 258
Query: 369 VAATVQAIGKCAANI--AQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQT-----QP 421
+ + + +L+ + V A + +K + +
Sbjct: 259 RYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318
Query: 422 EAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDV----LRKAAITFVNEE 477
I ++ S ++A+ ++ L P LG D L + + +E
Sbjct: 319 NVIMSQILPCIKELVSDANQHVKSALASVIMG---LSPILGKDNTIEHLLPLFLAQLKDE 375
Query: 478 D-IVKLQVLN 486
V+L +++
Sbjct: 376 CPEVRLNIIS 385
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 50.6 bits (121), Expect = 5e-07
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 4/136 (2%)
Query: 43 ARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDM 102
++ L+ R L D N L R S+ RVL + + + D
Sbjct: 11 SKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDK---- 66
Query: 103 SPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMI 162
+ R A + ++ + ++ L DK+ V +A+ + + C +
Sbjct: 67 NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS 126
Query: 163 HKSYRKLCNLLVDVDE 178
K + D
Sbjct: 127 PKIVEQSQITAFDKST 142
Score = 49.4 bits (118), Expect = 1e-06
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
Query: 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIP--IVMLAIKDSSLDMSPYVRKTAAHA 113
++ D N + R +L I++ + + + D S VR TA +
Sbjct: 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIES 114
Query: 114 IPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMA 150
+ +P ++V + DK+T V + A
Sbjct: 115 TAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFA 151
Score = 49.0 bits (117), Expect = 2e-06
Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 42 LARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLD 101
A+ ++ + + Q D + +R + +S I IP+++ +KD
Sbjct: 115 TAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDP--- 171
Query: 102 MSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER 158
+ VR AA AI + ++ ++LQDK V A++ +R
Sbjct: 172 -NGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 223
Score = 42.1 bits (99), Expect = 3e-04
Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 8/139 (5%)
Query: 14 RDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRA 73
R D ++ KN + + L + ++ + AL D + +RA
Sbjct: 50 RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRA 109
Query: 74 SALRVLSSIR--VPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLV 131
+A+ + P+ P ++ + ++ D S VR+ A AI + + + +
Sbjct: 110 TAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI------NDKATIPL 163
Query: 132 IEKLLQDKTTLVVGSAVMA 150
+ LL+D V A A
Sbjct: 164 LINLLKDPNGDVRNWAAFA 182
Score = 37.5 bits (87), Expect = 0.008
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 62 RALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD 121
L+D N+ +R A+ LS + ++ ++ +K ++ V A +L
Sbjct: 199 EMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT------VYDDIIEAAGEL---- 248
Query: 122 PEQKEELVLVIEKLLQDKTTLVVGSAVMA 150
K L ++ L + ++ SA+
Sbjct: 249 -GDKTLLPVLDTMLYKFDDNEIITSAIDK 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 48.1 bits (115), Expect = 2e-06
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 21 PAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLS 80
++K + ++ V++ L + +E+ ++ +ALKD + +R SA L
Sbjct: 48 EPLIKALKDEDAWVRRAAADALGQIGDER------AVEPLIKALKDEDGWVRQSAAVALG 101
Query: 81 SIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKT 140
I + ++ A+KD +VR AA A+ ++ E V + K L+D+
Sbjct: 102 QIGDERAVEPLIKALKDE----DWFVRIAAAFALGEIGD------ERAVEPLIKALKDED 151
Query: 141 TLVVGSAVMAFEEVCPERI 159
V SA A E+ ER+
Sbjct: 152 GWVRQSAADALGEIGGERV 170
Score = 43.8 bits (104), Expect = 5e-05
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIP 115
+ + + L+D + +R +A L I + ++ A+KD +VR+ AA A+
Sbjct: 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE----DAWVRRAAADALG 70
Query: 116 KLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMA 150
++ E V + K L+D+ V SA +A
Sbjct: 71 QI------GDERAVEPLIKALKDEDGWVRQSAAVA 99
Score = 38.1 bits (89), Expect = 0.004
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 62 RALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL 120
+ALKD + +R SA L I + + + + + RK A + + SL
Sbjct: 145 KALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETG----TGFARKVAVNYLETHKSL 199
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 47.4 bits (113), Expect = 3e-06
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 62 RALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD 121
+ALKD + +R SA L I + ++ A+KD +VR AA A+ ++
Sbjct: 88 KALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDE----DWFVRIAAAFALGEI---- 139
Query: 122 PEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERI 159
E V + K L+D+ V SA A E+ ER+
Sbjct: 140 --GDERAVEPLIKALKDEDGWVRQSAADALGEIGGERV 175
Score = 47.0 bits (112), Expect = 5e-06
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIP 115
++ +ALKD + +R +A L I + ++ A+KD +VR++AA A+
Sbjct: 113 AVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDE----DGWVRQSAADALG 168
Query: 116 KLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEE 153
++ E + +EKL + T AV E
Sbjct: 169 EI------GGERVRAAMEKLAETGTGFARKVAVNYLET 200
Score = 43.5 bits (103), Expect = 7e-05
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 56 SISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIP 115
+ + + L+D + +R +A L I + ++ A+KD +VR+ AA A+
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDE----DAWVRRAAADALG 75
Query: 116 KLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMA 150
++ E V + K L+D+ V SA +A
Sbjct: 76 QI------GDERAVEPLIKALKDEDGWVRQSAAVA 104
Score = 43.1 bits (102), Expect = 8e-05
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 62 RALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD 121
+ALKD + +R SA L I + + + + + RK A + + S +
Sbjct: 150 KALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGT----GFARKVAVNYLETHKSFN 205
Query: 122 PEQ 124
Sbjct: 206 HHH 208
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 45.4 bits (108), Expect = 4e-06
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 62 RALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD 121
+L + + IR +A ++ + + + ++ ++D S +VR AA ++ ++
Sbjct: 49 ESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDD----SGFVRSGAARSLEQI---- 100
Query: 122 PEQKEELVLVIEKLLQDKTTLVVGSAVMA 150
E + +EKL + T AV
Sbjct: 101 --GGERVRAAMEKLAETGTGFARKVAVNY 127
Score = 40.7 bits (96), Expect = 2e-04
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 62 RALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLD 121
+ D N+ +R LS + P++ ++ + +R AA I
Sbjct: 19 SHMADENKWVRRDVSTALSRMGDEAFEPLLE-SLSNE----DWRIRGAAAWIIGNF---- 69
Query: 122 PEQKEELVLVIEKLLQDKTTLVVGSAVMA 150
Q E V + KLL+D + V A +
Sbjct: 70 --QDERAVEPLIKLLEDDSGFVRSGAARS 96
Score = 38.0 bits (89), Expect = 0.002
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 62 RALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAI 114
+ L+D + +R+ A R L I + + + + + RK A + +
Sbjct: 80 KLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGT----GFARKVAVNYL 128
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 47.0 bits (111), Expect = 7e-06
Identities = 19/141 (13%), Positives = 48/141 (34%), Gaps = 9/141 (6%)
Query: 62 RALKDPNQLIRASALRVLSSI------RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIP 115
L D + +A+ ++ I ++ + +K S + + + A A
Sbjct: 39 ELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE---AIPLTQEIAKAFG 95
Query: 116 KLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVD 175
++ PE + ++ V+ + + A EE+ ++ R ++L
Sbjct: 96 QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSS 155
Query: 176 VDEWGQVFILNMLTRYARTQF 196
+ ++ LN + F
Sbjct: 156 KNREDKLTALNFIEAMGENSF 176
Score = 43.2 bits (101), Expect = 1e-04
Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 2/128 (1%)
Query: 29 SKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSI--RVPM 86
S+ I + + + + A+E+ +L I + ++ + + L I PM
Sbjct: 81 SEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM 140
Query: 87 IIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGS 146
++ ++ + + TA + I + + + I LL D +V S
Sbjct: 141 LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRAS 200
Query: 147 AVMAFEEV 154
AV A +
Sbjct: 201 AVEALVHL 208
Score = 40.8 bits (95), Expect = 7e-04
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 3/116 (2%)
Query: 9 MMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPN 68
A + + + + SKN E K ++ E + L D +
Sbjct: 135 AKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGD 194
Query: 69 QLIRASALRVLSSIRV--PMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP 122
+++RASA+ L + + +V+ +++ + D S V KT I +L L+
Sbjct: 195 EIVRASAVEALVHLATLNDKLRKVVIKRLEELN-DTSSLVNKTVKEGISRLLLLEG 249
Score = 38.1 bits (88), Expect = 0.005
Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Query: 370 AATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIR 429
A + + K +A+ ++ L L+ LL VV ++ +I + +T+ + Y +++
Sbjct: 14 LANGEHLEKILI-MAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK 72
Query: 430 HMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNEEDIVKLQVL 485
+ L I G+ + P L ++ + ++ K+ V
Sbjct: 73 KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVS 128
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine
acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Length = 507
Score = 45.7 bits (107), Expect = 4e-05
Identities = 15/96 (15%), Positives = 37/96 (38%)
Query: 28 VSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMI 87
V + K+L ++ ++ + +LA +I+ +D + IR A++ L
Sbjct: 38 VKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGEN 97
Query: 88 IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE 123
+P V + +A+ ++ +D +
Sbjct: 98 LPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK 133
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 44.4 bits (104), Expect = 1e-04
Identities = 57/393 (14%), Positives = 113/393 (28%), Gaps = 72/393 (18%)
Query: 18 DLFPAVVKNVVSKNIEVKKLVYVYLARYAEE---------QQDLALLSISTFQRALKDPN 68
DL P + + S++ + + L + E+ + I F + K +
Sbjct: 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS 187
Query: 69 QLIRASALRVLSSIRVPM------IIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDP 122
IR+ A+ ++ + I + + + D P VRK A+ L +
Sbjct: 188 PKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM 247
Query: 123 E----QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDE 178
+ +V + + QD+ V A + + + I R L L+
Sbjct: 248 DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV-RHLPKLI----- 301
Query: 179 WGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDK---------KPFYDDETTRD 229
V + M ++ +D K Y DE
Sbjct: 302 --PVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPH 359
Query: 230 TKNETSQVSTELDPDHR------------------------------LLLKNAKPLLQSR 259
++ + + L + K L++S
Sbjct: 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419
Query: 260 NAAVVMAVAQLFHHLAPRREVAIIAKALVR-LLRSSREVQTVVLTTIASLAVKRRALFVP 318
+ A P + + L++ +L S++ VQ + A+L + VP
Sbjct: 420 TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP 479
Query: 319 YLKS-----FYVRSSDPTHVKTLKLELLTTLAS 346
YL + S + + + TLA
Sbjct: 480 YLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 40.4 bits (94), Expect = 0.002
Identities = 34/228 (14%), Positives = 71/228 (31%), Gaps = 31/228 (13%)
Query: 255 LLQSRNAAVVMAVAQLFHHLAPRREVAIIA-------KALVRLLRS-SREVQTVVLTTIA 306
+L S +V+ H+L +E A +A + +V LL + + + +
Sbjct: 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301
Query: 307 SLAVK--------RRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILRE-- 356
LA + L + +R+ + +L L+ +S + E
Sbjct: 302 ILAYGNQESKLIILASGGPQALVNI-MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 360
Query: 357 ----FQTYISSVDKAFVAATVQAIGKCAANIAQVTDT--CLTGLVSLLSYSDEAVVAESV 410
+++ + V + + + + L LV LL D VV +
Sbjct: 361 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 420
Query: 411 VVIKNLLQTQPE-----AYTDIIRHMVR-LSDSITVPTARAAILWLLG 452
++ NL + I +VR + + + L
Sbjct: 421 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 468
Score = 39.2 bits (91), Expect = 0.004
Identities = 38/274 (13%), Positives = 83/274 (30%), Gaps = 45/274 (16%)
Query: 198 DPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHR--------LLL 249
D +++ E + + + D + +V + P+
Sbjct: 54 DDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQF 113
Query: 250 KNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAK----ALVRLLRS-SREVQTVVLTT 304
+A P R A + +L ++ A +A L +LL + V
Sbjct: 114 DSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVM 173
Query: 305 IASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSV 364
+ L+ K + + +RS + + T+ R
Sbjct: 174 VHQLSKKEAS------RHAIMRSPQ-------MVSAIVRTMQNTNDVETARC-------- 212
Query: 365 DKAFVAATVQAIGKCAANIAQVTDT-CLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEA 423
+ T+ + + + + + LV++L ++V+ ++ + NLL Q A
Sbjct: 213 ----TSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268
Query: 424 YTDI-----IRHMVRLSDSITVPTARAAILWLLG 452
+ ++ MV L + T A L
Sbjct: 269 KMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQ 301
Score = 28.8 bits (64), Expect = 6.0
Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 30/187 (16%)
Query: 255 LLQSRNA-AVVMAVAQLFHHLA--PRREVAIIA----KALVRLLRSSREVQTVVLTTIAS 307
LL + ++ A L +LA P + LV+LL A
Sbjct: 496 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR------------AH 543
Query: 308 LAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILRE------FQTYI 361
+RR + F V+ L LA + ++R F +
Sbjct: 544 QDTQRRTSMGGTQQQFVEGVRMEEIVEAC-TGALHILARDIHNRIVIRGLNTIPLFVQLL 602
Query: 362 SSVDKAFVAATVQAIGKCAANIAQ----VTDTCLTGLVSLLSYSDEAVVAESVVVIKNLL 417
S + + + A + + L LL +E V + V+ +
Sbjct: 603 YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662
Query: 418 QTQPEAY 424
+ +P+ Y
Sbjct: 663 EDKPQDY 669
Score = 28.5 bits (63), Expect = 7.9
Identities = 28/208 (13%), Positives = 60/208 (28%), Gaps = 29/208 (13%)
Query: 248 LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRS-SREVQTVVLTTIA 306
+++ + V+ V + P A +AL L S+ + L T+
Sbjct: 326 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385
Query: 307 SLAVKRRALF-----VPYLKSFYVRSSDPTHVKTLKLELLTTLASETS-----------I 350
+L+ + L + S D +V T +L+ L I
Sbjct: 386 NLSDAATKQEGMEGLLGTLVQL-LGSDDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443
Query: 351 ASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDT--------CLTGLVSLLSYSD 402
+++R + + + A+ + L +V LL
Sbjct: 444 EALVRTVLR--AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS 501
Query: 403 EAVVAESVVVIKNLLQTQPEAYTDIIRH 430
+ ++ V + L P + +
Sbjct: 502 HWPLIKATVGLIRNLALCPANHAPLREQ 529
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 40.3 bits (94), Expect = 0.002
Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 33/234 (14%)
Query: 248 LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKA---LVRLLRSSR-EVQTVVLT 303
LK + +A + + + + + I A A + LL S +VQ +
Sbjct: 72 FLKRKENCTLQFESA--WVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVW 129
Query: 304 TIASLAVK----RRALF----VPYLKSFYVRSSDPTHVKTLKLELLTTLASETS------ 349
+ ++A R + +P L + + + T + + L+ L S
Sbjct: 130 ALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNA-VWALSNLCRGKSPPPEFA 188
Query: 350 -IASILREFQTYISSVDKAFVAATVQAIGKCAA----NIAQVTDT-CLTGLVSLLSYSDE 403
++ L + D +A A+ + I V D LV LL ++D
Sbjct: 189 KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY 248
Query: 404 AVVAESVVVIKNLL-----QTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLG 452
VV+ ++ + N++ QTQ ++ ++ L S + + W +
Sbjct: 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWTIS 301
Score = 38.3 bits (89), Expect = 0.007
Identities = 44/270 (16%), Positives = 80/270 (29%), Gaps = 36/270 (13%)
Query: 248 LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKA---LVRLLRSS-REVQTVVLT 303
L L +RNA A++ L +P E A ++ L LL S +V
Sbjct: 157 LFSKQNRLTMTRNAV--WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214
Query: 304 TIASLAVK--------RRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSI----- 350
++ L+ A L + +D V + L + + + I
Sbjct: 215 ALSYLSDGPNDKIQAVIDAGVCRRLVEL-LMHNDYK-VVSPALRAVGNIVTGDDIQTQVI 272
Query: 351 --ASILREFQTYISSVDKAFVAATVQAIGKCAA----NIAQVTDT-CLTGLVSLLSYSDE 403
S L+ +SS ++ I A I V D L+S+L ++
Sbjct: 273 LNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF 332
Query: 404 AVVAESVVVIKNLL------QTQPEAYTDIIRHMVRLSDSITVPTARAAI--LWLLGEYS 455
E+ I N Q + I+ + L + + A+ L +
Sbjct: 333 RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392
Query: 456 HLVPALGPDVLRKAAITFVNEEDIVKLQVL 485
+ + K++ L
Sbjct: 393 EQEAKRNGTGINPYCALIEEAYGLDKIEFL 422
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 38.2 bits (89), Expect = 0.007
Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 31/228 (13%)
Query: 255 LLQSRNAAVVMAVAQLFHHLA---PRREVAIIA----KALVRLLRS-SREVQTVVLTTIA 306
+L S +V+ H+L ++A+ + +V LL + + + +
Sbjct: 109 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168
Query: 307 SLAVK--------RRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSI------AS 352
LA + L + +R+ + +L L+ +S A
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNI-MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227
Query: 353 ILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDT--CLTGLVSLLSYSDEAVVAESV 410
++ +++ + V + + + + L LV LL D VV +
Sbjct: 228 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 287
Query: 411 VVIKNLL-----QTQPEAYTDIIRHMVR-LSDSITVPTARAAILWLLG 452
++ NL I +VR + + + L
Sbjct: 288 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335
Score = 33.2 bits (76), Expect = 0.30
Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 36/231 (15%)
Query: 255 LLQSRNAAVVMAVAQLFHHLA----PRREVAIIA---KALVRLLRSSR--EVQTVVLTTI 305
LL + VV A + H L+ R + A+VR ++++ E T+
Sbjct: 25 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTL 84
Query: 306 ASLAVK---RRALF----VPYLKSFYVRSSDPTHVKTLKLELLTTLASETS-------IA 351
+L+ A+F +P L + S V + L L +A
Sbjct: 85 HNLSHHREGLLAIFKSGGIPALVKM-LGSPVD-SVLFYAITTLHNLLLHQEGAKMAVRLA 142
Query: 352 SILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDT-----CLTGLVSLL-SYSDEAV 405
L++ ++ + F+A T + A + LV+++ +Y+ E +
Sbjct: 143 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 202
Query: 406 VAESVVVIKNLLQT----QPEAYTDIIRHMVRLSDSITVPTARAAILWLLG 452
+ + V+K L ++ + + + LW L
Sbjct: 203 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC-LWTLR 252
Score = 33.2 bits (76), Expect = 0.30
Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 37/191 (19%)
Query: 273 HLAPRREVAIIAK----ALVRLLRS-SREVQTVVLTTIASLAVKRRALFVPYLKSFYVRS 327
+L ++ A +A L +LL + V + L+ K + + +RS
Sbjct: 4 NLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS------RHAIMRS 57
Query: 328 SDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVT 387
+ + T+ R A T+ + + +
Sbjct: 58 PQ-------MVSAIVRTMQNTNDVETARC------------TAGTLHNLSHHREGLLAIF 98
Query: 388 DT-CLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDI-----IRHMVRLSDSITVP 441
+ + LV +L ++V+ ++ + NLL Q A + ++ MV L + T
Sbjct: 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNV 157
Query: 442 TARAAILWLLG 452
A L
Sbjct: 158 KFLAITTDCLQ 168
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 38.0 bits (88), Expect = 0.009
Identities = 26/209 (12%), Positives = 65/209 (31%), Gaps = 30/209 (14%)
Query: 273 HLAPRREVAIIAK----ALVRLLRS-SREVQTVVLTTIASLAVK---RRALF-----VPY 319
+L ++ A +A L +LL + V + L+ K R A+ V
Sbjct: 1 NLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 60
Query: 320 LKSFYVRSSDPTHVKTLKLELLTTLASETSI------ASILREFQTYISSVDKAFVAATV 373
+ +++++ L L+ + + + S + + +
Sbjct: 61 IVRT-MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119
Query: 374 QAIGKCAANIAQVTDT-----CLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDI- 427
+ + L +V+LL+ ++ +A + ++ L E+ I
Sbjct: 120 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179
Query: 428 ----IRHMVRLSDSITVPTARAAILWLLG 452
+ +V + + T +L
Sbjct: 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLK 208
Score = 35.3 bits (81), Expect = 0.067
Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 39/235 (16%)
Query: 248 LLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREV--AIIAKALVRLLRS-SREVQTVVLTT 304
++N + +R A + L HH + + ALV++L S V +TT
Sbjct: 64 TMQNTNDVETARCTA--GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121
Query: 305 IASLAVKRRA------------LFVPYLKSFYVRSSDPTHVKTLKLELLTTLA--SETSI 350
+ +L + + V L V+ + + L LA ++ S
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK------FLAITTDCLQILAYGNQESK 175
Query: 351 ASILRE---------FQTYISSVDKAFVAATVQAIGKCAANIAQVTDT-CLTGLVSLLSY 400
IL +TY + ++ + C++N + + + L L+
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235
Query: 401 SDEAVVAESVVVIKNL--LQTQPEAYTDIIRHMVRL--SDSITVPTARAAILWLL 451
+ +V + ++NL T+ E ++ +V+L SD I V T A IL L
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290
Score = 33.0 bits (75), Expect = 0.34
Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 36/231 (15%)
Query: 255 LLQSRNAAVVMAVAQLFHHLA--PRREVAIIA-----KALVRLLRSSR--EVQTVVLTTI 305
LL + VV A + H L+ AI+ A+VR ++++ E T+
Sbjct: 22 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTL 81
Query: 306 ASLAVK---RRALF----VPYLKSFYVRSSDPTHVKTLKLELLTTLASETS-------IA 351
+L+ A+F +P L + S + V + L L +A
Sbjct: 82 HNLSHHREGLLAIFKSGGIPALVKM-LGSPVDS-VLFYAITTLHNLLLHQEGAKMAVRLA 139
Query: 352 SILREFQTYISSVDKAFVAATVQAIGKCAA----NIAQVTDT-CLTGLVSLL-SYSDEAV 405
L++ ++ + F+A T + A + + + LV+++ +Y+ E +
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 199
Query: 406 VAESVVVIKNLL----QTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLG 452
+ + V+K L ++ + + + LW L
Sbjct: 200 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC-LWTLR 249
Score = 30.3 bits (68), Expect = 2.2
Identities = 33/262 (12%), Positives = 68/262 (25%), Gaps = 49/262 (18%)
Query: 255 LLQSRNAAVVMAVAQLFHHLAPRREVAIIA----KALVRLLRS-SREVQTVVLTTIASLA 309
L + +V +L+ LV+LL S V T +++L
Sbjct: 232 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291
Query: 310 V---KRRALF-----VPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYI 361
K + + + L +R+ D + + L L S A + +
Sbjct: 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ------ 345
Query: 362 SSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQP 421
A+ L +V LL + ++ V + L P
Sbjct: 346 ------------NAVRLHYG---------LPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384
Query: 422 EAYTDI-----IRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAITFVNE 476
+ + I +V+L T R + + +++
Sbjct: 385 ANHAPLREQGAIPRLVQLLVRAHQDTQRRT-SMGGTQQQFVEGVRMEEIVEGCTGALHI- 442
Query: 477 EDIVKLQVLNLAPVEAAGITTL 498
+ + + I
Sbjct: 443 --LARDVHNRIVIRGLNTIPLF 462
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 36.5 bits (84), Expect = 0.025
Identities = 34/239 (14%), Positives = 72/239 (30%), Gaps = 36/239 (15%)
Query: 246 RLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKA---LVRLLRS-SREVQTVV 301
L K +Q +A A+ + + + + + A + LL S +
Sbjct: 107 SFLGKTDCSPIQ-FESA--WALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163
Query: 302 LTTIASLAVK----RRALF--------VPYLKSFYVRSSDPTHVKTLKLEL------LTT 343
+ + ++A R + + L + + +++ L L
Sbjct: 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 223
Query: 344 LASETSIASILREFQTYISSVDKAFVAATVQAIGKCAA----NIAQVTDT-CLTGLVSLL 398
++ IL + D +A + AI I V + LV LL
Sbjct: 224 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283
Query: 399 SYSDEAVVAESVVVIKNLL-----QTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLG 452
++ +V ++ I N++ QTQ + L + + W +
Sbjct: 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMS 341
Score = 35.0 bits (80), Expect = 0.080
Identities = 26/192 (13%), Positives = 54/192 (28%), Gaps = 29/192 (15%)
Query: 255 LLQSRNAAVVMAVAQLFHHLA---PRREVAIIA----KALVRLLRS-SREVQTVVLTTIA 306
LL + V+ +L R ++ LV+LL + + T L I
Sbjct: 240 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299
Query: 307 SLAVK--------RRALFVPYLKSFYVRSSDPTHVK----------TLKLELLTTLASET 348
++ A + S + + K + + + + +
Sbjct: 300 NIVTGTDEQTQKVIDAGALAVFPSL-LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 358
Query: 349 SIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQ--VTDTCLTGLVSLLSYSDEAVV 406
+ ++ K A V + L++LLS D ++
Sbjct: 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 418
Query: 407 AESVVVIKNLLQ 418
+ I N+ Q
Sbjct: 419 QVILDAISNIFQ 430
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 33.8 bits (76), Expect = 0.14
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 56 SISTFQRALKDPNQLIRASA---LRVLSSIRVPMIIPIVMLAIKDSSL-DMSPYVRKTAA 111
++ LK N R +A LR+ ++ P + D+S YVRK+
Sbjct: 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVG 199
Query: 112 HAIPKLYSLDPEQKEELV 129
+A+ + P+ + +
Sbjct: 200 NALRDISKKFPDLVKIEL 217
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 33.1 bits (75), Expect = 0.23
Identities = 24/197 (12%), Positives = 56/197 (28%), Gaps = 35/197 (17%)
Query: 253 KPLLQSRNAAVVMAVAQLFHHLA---PRREVAIIA----KALVRLLRSSR--EVQTVVLT 303
L++ A + AQL + + ++ + L+RLL V+ L
Sbjct: 88 GRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALF 147
Query: 304 TIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISS 363
I+ L VR + L + ++R Q +
Sbjct: 148 AISCL----------------VREQEA---------GLLQFLRLDGFSVLMRAMQQQVQK 182
Query: 364 VDKAFVAATVQAIGKCAANIAQVTDT-CLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPE 422
+ + + + + LV+L+ + + +L+ P+
Sbjct: 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 242
Query: 423 AYTDIIRHMVRLSDSIT 439
+ + L + +
Sbjct: 243 GVRECREPELGLEELLR 259
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 32.6 bits (75), Expect = 0.24
Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 50/220 (22%)
Query: 255 LLQSRNAAVVMAVAQLFHHLA---PRREVAIIA----KALVRLLRS-SREVQTVVLTTIA 306
L S + + + + +A + A+I ALV+LL S + ++ L ++
Sbjct: 20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79
Query: 307 SLAVKRRALFVPYLKSFYVRSSDPTHVKTLK----LELLTTLASETSIASILREFQTYIS 362
++A S ++ + L L L S + IL+E
Sbjct: 80 NIA-----------------SGGNEQIQAVIDAGALPALVQLLSSPNE-QILQE------ 115
Query: 363 SVDKAFVAATVQAIGKC-AANIAQVTDT-CLTGLVSLLSYSDEAVVAESVVVIKNLLQTQ 420
+ I I V D L LV LLS +E ++ E++ + N+
Sbjct: 116 ------ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169
Query: 421 PE-----AYTDIIRHMVRLSDSITVPTARAAILWLLGEYS 455
E + + +L + A L +
Sbjct: 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEA-QEALEKLQ 208
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 32.3 bits (74), Expect = 0.39
Identities = 41/232 (17%), Positives = 89/232 (38%), Gaps = 37/232 (15%)
Query: 255 LLQSRNAAVVMAVAQLFHHLA----PRREVAIIAKA---LVRLLRS-SREVQTVVLTTIA 306
L S + ++ + F + + + I A A LV+LL S + ++ L ++
Sbjct: 20 QLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79
Query: 307 SLAV----KRRALF----VPYLKSFYVRSSDPTHVKTLKLELLTTLA--SETSIASILRE 356
++A + +A+ +P L + S + + L L+ +A I +++
Sbjct: 80 NIASGGNEQIQAVIDAGALPALVQL-LSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDA 137
Query: 357 -----FQTYISSVDKAFVAATVQAIGKCAA----NIAQVTDT-CLTGLVSLLSYSDEAVV 406
+SS ++ + + A+ A+ I V D L LV LLS +E ++
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197
Query: 407 AESVVVIKNLLQTQPEAYTDI-----IRHMVRL--SDSITVPTARAAILWLL 451
E++ + N+ E + + + +L ++ + L L
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249
Score = 30.7 bits (70), Expect = 1.1
Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 33/177 (18%)
Query: 42 LARYAEEQQDLALLS--ISTFQRALKDPNQLIRASALRVLSSI------RVPMII----- 88
+A EQ + + + + L PN+ I AL LS+I ++ +I
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140
Query: 89 -PIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELV-------LVIEKLLQDKT 140
+V L + + + + A A+ + S EQ + ++ LV +LL
Sbjct: 141 PALVQL-LSSPNEQ----ILQEALWALSNIASGGNEQIQAVIDAGALPALV--QLLSSPN 193
Query: 141 TLVVGSAVMAFEEVC---PERIDMIHKSY--RKLCNLLVDVDEWGQVFILNMLTRYA 192
++ A+ A + E+ + ++ KL L +E Q L +
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
Score = 30.0 bits (68), Expect = 2.4
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Query: 351 ASILREFQTYISSVDKAFVAATVQAIGKCAA----NIAQVTDT-CLTGLVSLLSYSDEAV 405
S L + ++S D + + + + I V D L LV LLS +E +
Sbjct: 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 406 VAESVVVIKNLL-----QTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLG 452
+ E++ + N+ Q Q + +V+L S + A+ W L
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL-WALS 121
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 32.3 bits (73), Expect = 0.43
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 5 TCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLS------IS 58
+ ++V+++ +KN VK +++AR Q AL +
Sbjct: 120 EAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179
Query: 59 TFQRALKDPNQLIRASALRVLSSI 82
+ + L +P+ +R S+ L ++
Sbjct: 180 SLVKTLNEPDPTVRDSSAEALGTL 203
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 32.7 bits (74), Expect = 0.47
Identities = 33/198 (16%), Positives = 66/198 (33%), Gaps = 31/198 (15%)
Query: 255 LLQSRNAAVVMAVAQLFHHLA----PRREVAI---IAKALVRLLRS-SREVQTVVLTTIA 306
L+ S + ++ +L+ + I I K LV LL S VQT L +
Sbjct: 265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324
Query: 307 SLAVK--------RRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLA-SETSIASILRE- 356
++ A +P L+ + S K + A + I +++
Sbjct: 325 NIVTGNDLQTQVVINAGVLPALRLL-LSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 383
Query: 357 ----FQTYISSVDKAFVAATVQAIGKCAANIAQ--------VTDTCLTGLVSLLSYSDEA 404
+ + AI ++ Q V+ C+ L LL +D
Sbjct: 384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 443
Query: 405 VVAESVVVIKNLLQTQPE 422
++ ++ ++N+L+
Sbjct: 444 IIEVTLDALENILKMGEA 461
Score = 30.0 bits (67), Expect = 2.9
Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 28/212 (13%)
Query: 243 PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKA---LVRLLRS-SREVQ 298
P ++ +P + AA A+ + + + +V + A A ++LL + S EV+
Sbjct: 133 PRLVEFMRENQPEMLQLEAA--WALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190
Query: 299 TVVLTTIASLAVK----RRALF----VPYLKSFYVRSSDPTHVKTLKLELLTTLASETS- 349
+ + ++A R + + + S+ P+ ++T L+ L
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL-FNSNKPSLIRTA-TWTLSNLCRGKKP 248
Query: 350 ------IASILREFQTYISSVDKAFVAATVQAIGKCAANI-----AQVTDTCLTGLVSLL 398
++ L I S+D + AI + A + LV LL
Sbjct: 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 308
Query: 399 SYSDEAVVAESVVVIKNLLQTQPEAYTDIIRH 430
S+ V ++ + N++ +I
Sbjct: 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINA 340
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.49
Identities = 5/22 (22%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 570 SMQPF-PEIASIDPGLAVEVSL 590
S++ + + A P LA++ ++
Sbjct: 28 SLKLYADDSA---PALAIKATM 46
Score = 28.0 bits (61), Expect = 5.8
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 21/44 (47%)
Query: 94 AIK--DSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVL--VIE 133
A+K +SL KLY+ + L + +E
Sbjct: 21 ALKKLQASL---------------KLYA--DDSAPALAIKATME 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 31.7 bits (73), Expect = 0.52
Identities = 8/46 (17%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 120 LDPEQKEELVLVIEKLLQDK-TTLVVGSAVMAFEEVCPERIDMIHK 164
+D + K +++ I ++L++K ++ + C + + +HK
Sbjct: 164 IDEDSKHKVLKSILEILKEKGIVIISSREEL---SYC-DVNENLHK 205
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo
sapiens} PDB: 3odr_A 3ods_A 3o2q_A* 3o2s_A
Length = 386
Score = 32.1 bits (72), Expect = 0.56
Identities = 18/86 (20%), Positives = 36/86 (41%)
Query: 66 DPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK 125
+ +++ ++ L + P ++ + I D S VRK I + D E
Sbjct: 39 NDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL 98
Query: 126 EELVLVIEKLLQDKTTLVVGSAVMAF 151
+L+ + LL+D+ VV A++
Sbjct: 99 LKLIANLNMLLRDENVNVVKKAILTM 124
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 31.6 bits (71), Expect = 0.74
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 119 SLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDM 161
LD E++ +L+ ++E+ L+ +++ S ++ I +
Sbjct: 284 YLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 31.8 bits (71), Expect = 0.81
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 255 LLQSRNAAVVMAVAQLFHHLAPRREVAIIA-------KALVRLLRS-SREVQTVVLTTIA 306
+L R AV A HL R + LV LL +EV +
Sbjct: 56 MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALK 115
Query: 307 SLAVKR 312
+++ R
Sbjct: 116 NISFGR 121
Score = 31.1 bits (69), Expect = 1.2
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 371 ATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDI--- 427
A++ ++ K L ++++L + +AV + + +++L + TD+
Sbjct: 30 ASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL 89
Query: 428 --IRHMVRL--SDSITVPTARAAILWLL 451
I +V L V L +
Sbjct: 90 KGIPVLVGLLDHPKKEVHLGACGALKNI 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop,
transcription, protein binding; 2.40A {Drosophila
melanogaster}
Length = 257
Score = 30.8 bits (69), Expect = 1.2
Identities = 11/100 (11%), Positives = 35/100 (35%)
Query: 66 DPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK 125
+ + ++ + + ++ + D + VRK + ++ + E
Sbjct: 29 PSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL 88
Query: 126 EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKS 165
++ V+ LL+D + V+ + A + + +
Sbjct: 89 PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSL 128
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 30.6 bits (69), Expect = 1.3
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 61 QRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPK 116
+ L DP RA A+R + + I+DS VR+ A+ +P+
Sbjct: 56 VQYLADPFWERRAIAVRYSP-------VEALTPLIRDS----DEVVRRAVAYRLPR 100
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 31.2 bits (69), Expect = 1.5
Identities = 72/511 (14%), Positives = 137/511 (26%), Gaps = 82/511 (16%)
Query: 17 SDLFPAVVKNVVSKNIEVKKLVYVYL----ARYAEEQQDLALLSISTFQRALK-DPNQLI 71
+ P VVK + E+++ R +E I+ + L DPN
Sbjct: 254 EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNY 313
Query: 72 RASALRVLSSIRVPMI-IPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVL 130
+ DMS VR+ AA + + S E E
Sbjct: 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK 373
Query: 131 ----VIEKLLQDKTTLVVGSAVMAFEEVCP--------------------------ERID 160
+ +++ V A+ + ++
Sbjct: 374 TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP 433
Query: 161 MIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTD----------PNLNENDSSED- 209
I K+ K +L L T +LN+ SS +
Sbjct: 434 NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNL 493
Query: 210 -----------DDDLDGEDKKPFYD---DETTRDTKNETSQVSTELDPDHRLLLKNAKPL 255
+ + P + ++++E + L+K +PL
Sbjct: 494 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL 553
Query: 256 LQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRAL 315
Q + + LF R KA + + I +L +
Sbjct: 554 DQPSSFDATPYIKDLFTCTIKR------LKAADIDQEVKERAISCMGQIICNLGDNLGSD 607
Query: 316 FVPYLKSFYVRSSDPTHVKTLKLELLTTLASETS------IASILREFQTYISSVDKAFV 369
L+ F R + T L S + + +++ +A
Sbjct: 608 LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALK 667
Query: 370 AATVQAIGKCAANI-----AQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAY 424
T+ A+ N A + D L L L+S SD V ++ + L + P +
Sbjct: 668 LGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL 727
Query: 425 T----DIIRHMVRLSDSITVPTARAAILWLL 451
+ I+ ++ L S + + +
Sbjct: 728 SKISGSILNELIGLVRSPLLQGGALSAMLDF 758
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 31.0 bits (69), Expect = 1.5
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 255 LLQSRNAAVVMAVAQLFHHLA---PRREVAIIA----KALVRLLRS-SREVQTVVLTTIA 306
L S++ A H + + LV LLRS ++ VQ +
Sbjct: 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALR 69
Query: 307 SLAVK 311
+L +
Sbjct: 70 NLVFR 74
Score = 28.6 bits (63), Expect = 7.2
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 394 LVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDI-----IRHMVRLSDSITVPTARAAI- 447
V LS DE A I++ A + I +V L S +AA
Sbjct: 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66
Query: 448 -LWLL 451
L L
Sbjct: 67 ALRNL 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 30.3 bits (68), Expect = 1.9
Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 38/204 (18%)
Query: 285 KALVRLLRS-SREVQTVVLTTIASLAVK---------RRALFVPYLKSFYVRSSDPTHVK 334
+ALV L+S S ++Q V+ + + +L+ + R V L +
Sbjct: 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STL 304
Query: 335 TLKLELLTTLASETS------------IASILREFQTYISSVDKAFVAATVQAIGKCAAN 382
L L L++ + +A ++ + A + + + ++
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364
Query: 383 IAQVTDT--------CLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRH---- 430
IA D CL L+ L +V+ + + NL P+ +
Sbjct: 365 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 424
Query: 431 -MVRLSDSITVPTAR--AAILWLL 451
+ L S A AA L L
Sbjct: 425 MLKNLIHSKHKMIAMGSAAALRNL 448
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Length = 799
Score = 30.5 bits (68), Expect = 2.0
Identities = 68/427 (15%), Positives = 128/427 (29%), Gaps = 67/427 (15%)
Query: 34 VKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVML 93
V + Y R E+ A R + + L + V + + I+ L
Sbjct: 300 VHAFIKSYHGRVKYEEDICA--------RGVTNGICLTSFCHEEI-----VEIFLNIISL 346
Query: 94 AI--KDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQD----------KTT 141
K+ P + L LDP L+ +K+L D +
Sbjct: 347 GSQNKN------PDIANYYISCFAYLLELDPSNAY---LIYDKILIDLYDTLADQFINSR 397
Query: 142 LVVGSAVMAFEEVCPERIDMIHKSYRK-------LCNLLVDV-DEWGQVFILNMLTRYAR 193
+ S++ F V R ++ K YR + +D+ D ++N + A
Sbjct: 398 HRIISSLKQFTRVI--RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455
Query: 194 TQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDP-DHRLLLKNA 252
+ D + +DD + E + K S + +D K +
Sbjct: 456 ------FIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKAS 509
Query: 253 KPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRS---------SREVQTVVLT 303
+ QS V + QL V I + + L S + + +
Sbjct: 510 TTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWS 569
Query: 304 TIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASE-TSIASILREFQTYIS 362
+ V + VR + K L LL + + A +R I
Sbjct: 570 NDSFKEKDPNYELVTIPLAALVR-RNNGLSKELVRTLLFHIKEQIKRGAGSVRSTSE-IQ 627
Query: 363 SVDKA---FVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYS-DEAVVAESVVVIKNLLQ 418
D ++ A + C ++ + +D +T + L + + + +VI + L
Sbjct: 628 QRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALA 687
Query: 419 TQPEAYT 425
T
Sbjct: 688 TLCTTEI 694
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SAH; 2.00A {Thermus
thermophilus} PDB: 2zvc_A*
Length = 295
Score = 29.7 bits (67), Expect = 2.6
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 254 PLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLA 309
P + R+ + + L + A++ A R+ Q V LTT+ L
Sbjct: 183 PQSKRRDWQLRKSAEILLEYRPKETPAALVKSA-------YRKRQEVALTTLEGLR 231
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 29.5 bits (67), Expect = 2.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
KTA + L L+P + VLV+
Sbjct: 64 KTAVFVLATLQQLEPVTGQVSVLVM 88
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 29.9 bits (66), Expect = 2.9
Identities = 31/234 (13%), Positives = 76/234 (32%), Gaps = 26/234 (11%)
Query: 146 SAVMAFEEVCPE-RIDMIHKSYRKL----CNLLVDVDEWGQVFILNMLTRYARTQFTDPN 200
S ++ C E + K+ L ++DE + L D +
Sbjct: 235 SNLLKLRGYCSELGFQIWSLLIEKIISIDVELQNELDELDDDVDDDDLEEVDLEDDDDLD 294
Query: 201 LNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPD-HRLLLKNAKPLLQSR 259
+ D +++ E+ + D + D+++ + + + L + K L
Sbjct: 295 DDSGDDDDENCGNSNEELRSGAADGSQSDSEDMDIIEGMDGTEEYNVELTQGIKELSTKL 354
Query: 260 NAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPY 319
++ + + + + P + + L + +T VL T + Y
Sbjct: 355 DSILTLVSTHVEEQVTPESLESGEGVGVFNTLTTL--FKTHVLPT-------YYTRSIQY 405
Query: 320 LKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQT---YISSVDKAFVA 370
+ F+V + + L L ++ + A+ + Y+ S ++A
Sbjct: 406 I-MFHVSQQQLELMDSF-LVTLIDISFAVNEAAEKK--IKSLQYLGS----YIA 451
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 29.8 bits (68), Expect = 3.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
KTAA A+ L +D + + +
Sbjct: 171 KTAAFALTMLSRVDASVPKPQAICL 195
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A
{Homo sapiens} PDB: 3bd0_A
Length = 293
Score = 29.2 bits (65), Expect = 3.7
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 99 SLDMS-PYVRKTAAHAIPK-------LYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMA 150
S++M PY K + + +L +++E + K L D + L V S+
Sbjct: 128 SIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFC 187
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 29.6 bits (66), Expect = 3.7
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 131 VIEKLLQ--DKTTLVVGSAVMAFEEVCP----ERIDMIHKSYRK 168
+ L+ ++ +++GS +A + P ER+ MI
Sbjct: 26 TLNLALEKAEQVIIILGSHRVAADTRNPWRSPERMAMIEACLSP 69
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 29.4 bits (66), Expect = 4.0
Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 38/204 (18%)
Query: 285 KALVRLLRSSR-EVQTVVLTTIASLAVK-----RRALF----VPYLKSFYVRSSDPTHVK 334
+ALV L+S ++Q V+ + + +L+ + ++ L V L +
Sbjct: 130 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STL 188
Query: 335 TLKLELLTTLASETS------------IASILREFQTYISSVDKAFVAATVQAIGKCAAN 382
L L L++ + +A ++ + A + + + ++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248
Query: 383 IAQVTDT--------CLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPE-----AYTDIIR 429
IA D CL L+ L +V+ + + NL P+ +
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 308
Query: 430 HMVRLSDSITVPTAR--AAILWLL 451
+ L S A AA L L
Sbjct: 309 MLKNLIHSKHKMIAMGSAAALRNL 332
Score = 29.0 bits (65), Expect = 4.4
Identities = 26/221 (11%), Positives = 72/221 (32%), Gaps = 40/221 (18%)
Query: 255 LLQSRNAAVVMAVAQLFHHLAPRRE----VAIIA----KALVRLLRSSR--EVQTVVLTT 304
L+S + + +A + +L+ R + + KAL+ + VL+
Sbjct: 135 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA 194
Query: 305 IASLAVKRRAL---------FVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILR 355
+ +L+ + +L + T+ + L + +S+ +
Sbjct: 195 LWNLSAHCTENKADICAVDGALAFLVGT-LTYRSQTNTLAIIESGGGILRNVSSLIATNE 253
Query: 356 EFQTYI-------------SSVDKAFVAATVQAIGKCAANIAQVTDT-----CLTGLVSL 397
+ + + S V+ + +A + + ++ L +L
Sbjct: 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 313
Query: 398 LSYSDEAVVAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSI 438
+ + + S ++NL+ +P Y +++ S+
Sbjct: 314 IHSKHKMIAMGSAAALRNLMANRPAKYK--DANIMSPGSSL 352
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 28.7 bits (65), Expect = 4.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
K+ A+ IP L LD ++ +VI
Sbjct: 53 KSGAYLIPLLERLDLKKDNIQAMVI 77
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction,
SAM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 27.2 bits (60), Expect = 4.5
Identities = 5/28 (17%), Positives = 16/28 (57%)
Query: 608 GVEGEDGLSAPLKLSAPVGEWLRAVTMS 635
G G G+S+ +++ + ++L ++ +
Sbjct: 1 GSSGSSGMSSVSEVNVDIKDFLMSINLE 28
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 28.7 bits (65), Expect = 4.7
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
KT + L SL E +L++
Sbjct: 74 KTCVFSTIALDSLVLENLSTQILIL 98
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 29.1 bits (66), Expect = 5.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
KTA + L L+P + VLV+
Sbjct: 58 KTAVFVLATLQQLEPVTGQVSVLVM 82
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 28.7 bits (65), Expect = 5.8
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
KT +I L +D K L++
Sbjct: 64 KTGTFSIAALQRIDTSVKAPQALML 88
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 28.7 bits (64), Expect = 5.9
Identities = 19/147 (12%), Positives = 44/147 (29%), Gaps = 13/147 (8%)
Query: 155 CPERIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLD 214
PE I + + Y ++ + + F+ DPN E+ +
Sbjct: 28 YPEAITYLLEQYNRVEAEEARLSDLITGFV-------------DPNAEEDLAPTATHVGS 74
Query: 215 GEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHL 274
++ DDE + + + D L + L A+ H
Sbjct: 75 ELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHA 134
Query: 275 APRREVAIIAKALVRLLRSSREVQTVV 301
+ E+ +++ + ++ +V
Sbjct: 135 TAQEEILKLSEVFKQFRLVPKQFDYLV 161
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 28.6 bits (65), Expect = 6.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
KT +I L +D K L++
Sbjct: 71 KTGTFSIAALQRIDTSVKAPQALML 95
>1v8c_A MOAD related protein; riken structural genomics/proteomics
initiative, RSGI, structural genomics, protein binding;
1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Length = 168
Score = 28.0 bits (62), Expect = 6.3
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 436 DSITVP--TARAAILWLLGEYSHLVPAL-GPDVLRKAAITFVNEEDIVKLQVLNLAPVEA 492
+ +P T + L+ Y L L + L + F+ D+ LQ L+
Sbjct: 16 SQLELPGATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPG 75
Query: 493 AGITTLPP 500
A + PP
Sbjct: 76 ATLDLFPP 83
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 28.3 bits (64), Expect = 6.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
KT A+ +P + + PE+ E ++
Sbjct: 54 KTHAYLLPIMEKIKPERAEVQAVIT 78
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 28.7 bits (65), Expect = 7.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
KTA +I L LD + +E L++
Sbjct: 87 KTATFSISVLQCLDIQVRETQALIL 111
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 28.7 bits (63), Expect = 7.7
Identities = 70/519 (13%), Positives = 149/519 (28%), Gaps = 91/519 (17%)
Query: 19 LFPAVVKNVVSKNIEVKK---LVYVYLARYAEEQQDLALLS--ISTFQRALKDPNQLIRA 73
+ P + +++ + + + + + + E Q L+ + T +KDP+ ++R
Sbjct: 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 426
Query: 74 SALRVLSSIRVPMIIPIV-------MLAIKDSSLDMSPYVRKTAAHAIPKL---YSLDPE 123
+A + I + + +L L P V A L +
Sbjct: 427 TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAAD 486
Query: 124 QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVD----EW 179
++ L L+V + + + ++ +Y L ++ +
Sbjct: 487 VADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPA 546
Query: 180 GQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDG---------------EDKKPFYD- 223
Q L ++ R + + ++ +DL +D D
Sbjct: 547 VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV 606
Query: 224 ---------------DETTRDTKNETSQVSTELDPDHRLLLKNAKPLL----------QS 258
D S + L + ++ KP L Q
Sbjct: 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQV 666
Query: 259 RNAAV----VMAVAQLFHHLAPRREVAIIAKALVRLLRSS---REVQTVVLTTIASLAVK 311
AAV + A L ++ P + + + L+ L + R V+ +L+ +A+
Sbjct: 667 CLAAVGLVGDLCRA-LQSNIIPFCDE--VMQLLLENLGNENVHRSVKPQILSVFGDIALA 723
Query: 312 RRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSV--DKAFV 369
F YL+ + + K + S L + + + D+ V
Sbjct: 724 IGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENV 783
Query: 370 AATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEA------ 423
V + I D + + VVA + +I +L +
Sbjct: 784 HPDVMLVQPRVEFILSFIDHI-----AGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE 838
Query: 424 ----YTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLV 458
+++ R + AR W E L
Sbjct: 839 ARPMIHELLTEGRRSKTNKAKTLAR----WATKELRKLK 873
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 28.4 bits (63), Expect = 7.8
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 131 VIEKLLQ--DKTTLVVGSAVMAFEEVCP----ERIDMIHKSYRK 168
I LQ K + +GS P +R MI +
Sbjct: 26 NIIIALQNSKKVIINIGSCFNTPNIKNPFSFEQRKQMIESDLQV 69
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A
{Rhodobacter capsulatus} PDB: 3nei_A
Length = 264
Score = 28.2 bits (64), Expect = 8.1
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 267 VAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRA 314
V +L H VAI+ +A S Q VV T+A+L A
Sbjct: 177 VQKLVPHYGEDCPVAIVWRA-------SWPDQRVVRATLATLQTSLGA 217
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic
metallopeptidase, peptidase family M20/M25/M40,
structural genomics; HET: MSE PGE PG4; 1.60A
{Desulfovibrio desulfuricans subsp}
Length = 364
Score = 28.4 bits (64), Expect = 8.5
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 363 SVD-KAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDE 403
+ D K VA + + + + LL DE
Sbjct: 98 ANDDKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDE 139
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 28.0 bits (63), Expect = 8.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
KTA AI L L+ E KE LV+
Sbjct: 80 KTATFAISILQQLEIEFKETQALVL 104
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 28.3 bits (64), Expect = 8.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 108 KTAAHAIPKLYSLDPEQKEELVLVI 132
KTA AI L ++ + K LV+
Sbjct: 90 KTATFAISILQQIELDLKATQALVL 114
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 28.5 bits (64), Expect = 9.1
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 115 PKLY-------SLDPEQKEELVLVIEKLLQDKTTLVV 144
+Y LD ++ + I +LL++K +VV
Sbjct: 157 ADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.370
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,553,881
Number of extensions: 594101
Number of successful extensions: 1326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1227
Number of HSP's successfully gapped: 139
Length of query: 645
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 545
Effective length of database: 3,909,693
Effective search space: 2130782685
Effective search space used: 2130782685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)