RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8267
(645 letters)
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 310 bits (794), Expect = 4e-98
Identities = 59/465 (12%), Positives = 157/465 (33%), Gaps = 27/465 (5%)
Query: 1 MAKGTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTF 60
+ K +++ G D V + S K++ Y++++ +L L +
Sbjct: 51 VCKLLFIFLL--GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAI 108
Query: 61 QRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIK--DSSLDMSPYVRKTAAHAIPKLY 118
+ L N AL ++++ + I + D V+++AA + +LY
Sbjct: 109 KNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLY 168
Query: 119 SLDPE--QKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDV 176
P+ + + LL D+ VV +A + + + S + L +
Sbjct: 169 RTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRI 228
Query: 177 DEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQ 236
+ + + + L Y + ++
Sbjct: 229 VTSASTDLQDYTYYFVPAPWLSVKLLRLLQC--------------YPPPEDPAVRGRLTE 274
Query: 237 VSTELDPDHRLLLKNAKPLLQSRNAAVVM-AVAQLFHHLAPRREVAIIAKALVRLLRSSR 295
+ + K+ K + AV+ A++ + HH + + L + L+
Sbjct: 275 CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRE 334
Query: 296 -EVQTVVLTTIASLAVKRRA--LFVPYLKSF--YVRSSDPTHVKTLKLELLTTLASETSI 350
++ + L ++ +LA + ++++ +++ V+ ++LL + ++
Sbjct: 335 TNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNA 394
Query: 351 ASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESV 410
I+ E +Y+ + D + V + A A + +++L+ + + V E
Sbjct: 395 QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVW 454
Query: 411 VVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARA-AILWLLGEY 454
+ ++ + + + + + ++LGE+
Sbjct: 455 YRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEF 499
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 309 bits (792), Expect = 9e-98
Identities = 147/497 (29%), Positives = 242/497 (48%), Gaps = 63/497 (12%)
Query: 8 YMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDP 67
M G+D S LFP VV + + N+E+KKLVY+YL YA+ Q D+A++++++F + +DP
Sbjct: 36 AAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDP 95
Query: 68 NQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPE--QK 125
N LIRA A+R + IRV I + ++ D PYVRKTAA + KL+ ++ + +
Sbjct: 96 NPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED 155
Query: 126 EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPER-----IDMIHKSYRKLCNLLVDVDEWG 180
+ + + L+ D +VV +AV A E+ +D+ ++ KL L + EWG
Sbjct: 156 QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWG 215
Query: 181 QVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTE 240
Q+FIL+ L+ Y
Sbjct: 216 QIFILDCLSNYNPKD--------------------------------------------- 230
Query: 241 LDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP---------RREVAIIAKALVRLL 291
D + + + + P L N+AVV++ ++ + +A LV LL
Sbjct: 231 -DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL 289
Query: 292 RSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLASETSIA 351
EVQ V L I + KR + +K F+V+ +DP +VK KL+++ LAS+ +IA
Sbjct: 290 SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIA 349
Query: 352 SILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVV 411
+L E + Y + VD FV V+AIG+CA + Q + C++ L+ L+ VV E++V
Sbjct: 350 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIV 409
Query: 412 VIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDVLRKAAI 471
VI+++ + P Y II + DS+ P ARAA++W++GEY+ + ++L
Sbjct: 410 VIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA-DELLESFLE 468
Query: 472 TFVNEEDIVKLQVLNLA 488
F +E V+L +L
Sbjct: 469 GFHDESTQVQLTLLTAI 485
Score = 30.9 bits (69), Expect = 0.55
Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 4 GTCCYMMAKGRDASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRA 63
G C + + A ++ + +K V + V + + + I+T
Sbjct: 375 GRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCEN 432
Query: 64 LKDPNQ-LIRASALRVLS--SIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSL 120
L ++ RA+ + ++ + R+ ++ + + D S V+ T AI KL+
Sbjct: 433 LDSLDEPDARAAMIWIVGEYAERID-NADELLESFLEGFHDESTQVQLTLLTAIVKLFLK 491
Query: 121 DPEQKEELVLVIEKLLQ 137
P + +ELV +++L
Sbjct: 492 KPSETQELV---QQVLS 505
Score = 30.9 bits (69), Expect = 0.60
Identities = 45/308 (14%), Positives = 93/308 (30%), Gaps = 23/308 (7%)
Query: 16 ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASA 75
++ + + + L+ Y + A L N + SA
Sbjct: 197 NPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSA 256
Query: 76 LRVLSSI--RVPMIIPIVMLAIKDSS------LDMSPYVRKTAAHAIPKLYSLDPEQKEE 127
++VL +P + +K + L P V+ A I + PE ++
Sbjct: 257 VKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQ 316
Query: 128 LVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVDVDEWGQVFILNM 187
+ V D + + + I + +L +VD +
Sbjct: 317 EIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLA---ELKEYATEVDVDFVRKAVRA 373
Query: 188 LTRYARTQFTDPNLNEN---DSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPD 244
+ R A + D + + ++ D + S ++T +
Sbjct: 374 IGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENL 433
Query: 245 HRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTT 304
L +A+ AA++ V + + E+ + L S +VQ +LT
Sbjct: 434 DSLDEPDAR-------AAMIWIVGEYAERIDNADEL--LESFLEGFHDESTQVQLTLLTA 484
Query: 305 IASLAVKR 312
I L +K+
Sbjct: 485 IVKLFLKK 492
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 60.6 bits (145), Expect = 9e-11
Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 4/155 (2%)
Query: 55 LSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAI 114
L+ R L D N L R S+ RVL + + + D + R A +
Sbjct: 19 LNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDK----NYIRRDIGAFIL 74
Query: 115 PKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLV 174
++ + ++ L DK+ V +A+ + + C + K +
Sbjct: 75 GQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF 134
Query: 175 DVDEWGQVFILNMLTRYARTQFTDPNLNENDSSED 209
D + ++ +N
Sbjct: 135 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNG 169
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 48.2 bits (113), Expect = 3e-06
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 14/108 (12%)
Query: 57 ISTFQRALKDPNQLIRASALRVLSSI--------RVPMIIPIVMLAIKDSSLDMSPYVRK 108
I DPN L R + L ++ + ++P V+ D VR
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP----VANVRF 537
Query: 109 TAAHAIPKLYSLDPEQ--KEELVLVIEKLLQDKTTLVVGSAVMAFEEV 154
A ++ K+ + + E+ ++EKL QD+ V A A +
Sbjct: 538 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
Score = 27.8 bits (60), Expect = 5.3
Identities = 7/54 (12%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 88 IPIVMLAIKDSSLDMSPYVRKTAAHAIPKL-YSLDPEQ-KEELVLVIEKLLQDK 139
I +++ +++ +R + + + +L E+ + EL+ + + D+
Sbjct: 12 IAVLIDELRNED----VQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE 61
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 43.2 bits (100), Expect = 9e-05
Identities = 51/393 (12%), Positives = 112/393 (28%), Gaps = 18/393 (4%)
Query: 119 SLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPE-RIDMIHKSYRKLCNLLVDVD 177
LD + + ++V +I KLL+DK V AV + + + + LC ++ D
Sbjct: 37 KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS-D 95
Query: 178 EWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTK------ 231
+ I ++ + + + ++ + G E
Sbjct: 96 KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 155
Query: 232 -NETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRL 290
+ S+ L H +L P L S AV HL + + L
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHL 215
Query: 291 LR-----SSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLA 345
L S + IA+++ + YL+ +V +L A
Sbjct: 216 LSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA 275
Query: 346 SETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAV 405
E+ + +E ++S++ + ++ + D + + D+
Sbjct: 276 FESFVRRCPKEVYPHVSTI----INICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQG 331
Query: 406 VAESVVVIKNLLQTQPEAYTDIIRHMVRLSDSITVPTARAAILWLLGEYSHLVPALGPDV 465
+ ++ A + +V + + L+ + + DV
Sbjct: 332 SDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADV 391
Query: 466 LRKAAITFVNEEDIVKLQVLNLAPVEAAGITTL 498
+ A + T+
Sbjct: 392 FHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM 424
Score = 32.0 bits (71), Expect = 0.25
Identities = 19/170 (11%), Positives = 54/170 (31%), Gaps = 18/170 (10%)
Query: 16 ASDLFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASA 75
+++ ++K+ + +V L + + L + L + R+S
Sbjct: 926 VENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLL---PRLKGYLISGSSYARSSV 982
Query: 76 LRVLSSI----------RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQK 125
+ + + I + ++D L++ T A SL +
Sbjct: 983 VTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLL 1042
Query: 126 EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVD 175
+ ++ + + + L+ + F+ + +D+ RK +
Sbjct: 1043 DTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDI-----RKAAFECMY 1087
Score = 28.9 bits (63), Expect = 2.1
Identities = 17/128 (13%), Positives = 43/128 (33%), Gaps = 14/128 (10%)
Query: 62 RALKDPNQLIRASALRVLSSI-------RVPMIIPIVMLAIKDSSL---DMSPYVRKTAA 111
+ L+D N ++ A++ L + +V I+ + + D+S KT
Sbjct: 52 KLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVI 111
Query: 112 HAIPKLYSLDPEQKEELVLVIEKLL----QDKTTLVVGSAVMAFEEVCPERIDMIHKSYR 167
+P S + +L + + V A+ ++ + ++ +
Sbjct: 112 GELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP 171
Query: 168 KLCNLLVD 175
+ L+
Sbjct: 172 SILTCLLP 179
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 39.4 bits (90), Expect = 0.001
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 55 LSISTFQRALKDPNQLIRASALRVLSSI-----------RVPMIIPIVMLAIKDSSLDMS 103
+ + +K+P+ R +A+ I V +P ++ +KD S
Sbjct: 365 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS---- 420
Query: 104 PYVRKTAAHAIPKLYSLDPEQK---EELVLVIEKLLQ 137
VR TAA + ++ L PE L +++ L++
Sbjct: 421 VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
Score = 27.5 bits (59), Expect = 6.8
Identities = 43/441 (9%), Positives = 107/441 (24%), Gaps = 51/441 (11%)
Query: 62 RALKDPNQLIRASALRVLSSIRV---PMIIPIVMLAIKDSSLDMSPYVRKTAA------- 111
P++L +A + L V P + + + + R A
Sbjct: 7 EKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQV--ARVAAGLQIKNSL 64
Query: 112 ---------HAIPKLYSLDPEQKEELVLVIEKLLQDKTTLV-----VGSAVMAFEEVCPE 157
+ ++D + E+ + + L +T + + E +
Sbjct: 65 TSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQ 124
Query: 158 RIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGED 217
++I + + N + + + + E+
Sbjct: 125 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE 184
Query: 218 KKPFYDDETTRDTKNETSQVSTELD--PDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLA 275
T N D + +++ Q + V +A Q +
Sbjct: 185 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 244
Query: 276 PRR-----------EVAIIAKALVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFY 324
AI +A+ + + + + +
Sbjct: 245 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 304
Query: 325 VRSSDPTHVKTLKLELLTTLASETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIA 384
L+ L + ++T ++ + AA V +
Sbjct: 305 PPEHTSKFYAKGALQYLVPILTQTLT----KQDENDDDDDWNPCKAAGVCLMLLATCCED 360
Query: 385 QVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQ-TQPEAYTDIIRHMV-----RLSDSI 438
+ L + + D +V+ +L+ +P ++ + + D
Sbjct: 361 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP- 419
Query: 439 TVPTARAAILWLLGEYSHLVP 459
R W +G L+P
Sbjct: 420 -SVVVRDTAAWTVGRICELLP 439
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 35.9 bits (81), Expect = 0.016
Identities = 59/354 (16%), Positives = 121/354 (34%), Gaps = 27/354 (7%)
Query: 103 SPYVRKTAAHAIPKLYSLDPEQ---KEELVLVIEKLLQ--DKTTLVVGSAVMAFEEVCPE 157
S VR TAA + ++ L PE L +++ L++ V + AF +
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480
Query: 158 RIDMIHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGED 217
+ + + + ++ + +L R NL + + +
Sbjct: 481 AYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540
Query: 218 KKPF-YDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAP 276
K + +TT QV + LQS A + V + H
Sbjct: 541 KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600
Query: 277 RREVAIIAKALVRLLRS---SREVQTVVLTTIASLAVKRRALFVPYLKSFY------VRS 327
+ ++ +L+R+ +S S VQ L +++L F+ Y+++F +++
Sbjct: 601 LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN 660
Query: 328 SDPTHVKTLKLELLTTL--ASETSIASILREFQTYI------SSVDKAFVAATVQAIGKC 379
V + L+ L A +++I E + +V ++ + G
Sbjct: 661 YAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDI 720
Query: 380 AANI----AQVTDTCLTGLVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDIIR 429
A I + + L L + + V + L ++ EAYT I++
Sbjct: 721 ALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQ 774
Score = 32.8 bits (73), Expect = 0.16
Identities = 70/508 (13%), Positives = 152/508 (29%), Gaps = 48/508 (9%)
Query: 19 LFPAVVKNVVSKNIEVKKLVYVYLARYAEEQQDLALLSISTFQRALKDPNQLIRASALRV 78
LF ++ + S EV + + +E+ DLA+ + ++ P + +
Sbjct: 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ--GRPPEHTSKFYAKG 317
Query: 79 LSSIRVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQD 138
VP++ + ++ D K A + L + + VL K
Sbjct: 318 ALQYLVPILTQT-LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376
Query: 139 KTTLVVGSAVMAFEEVCPERIDM------IHKSYRKLCNLLVDVDEWGQVFILNMLTRYA 192
A + E + + ++ L L+ D + + R
Sbjct: 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436
Query: 193 RTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNA 252
+ + ++G +P + ++ + E + A
Sbjct: 437 ELLPEAAINDVYLAPLLQCLIEGLSAEPRVA-SNVCWAFSSLAEAAYEAADVADDQEEPA 495
Query: 253 KPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQTVVLTTIASLAVKR 312
L S +V + + + + + A L+ + + +
Sbjct: 496 TYCLSSSFELIVQKLLETTDRPD-GHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVI 554
Query: 313 RALFVPYLK--SFYVRSSDPTHVKTLKLELLTTLA--------------SETSIASILRE 356
L+ S +SD L+ L TL S+ +AS+LR
Sbjct: 555 MERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRM 614
Query: 357 FQTYISS--VDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAVVAESVV-VI 413
FQ+ S V + + A + + + L L E V + V ++
Sbjct: 615 FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLV 674
Query: 414 KNLLQTQPEAYTDIIRHMV-----RLSDSITVPTARAAILWLLGEYSHLVPALGPD---- 464
+L + ++ L + + + IL + G+ + A+G +
Sbjct: 675 GDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL---AIGGEFKKY 731
Query: 465 ------VLRKAAITFVNEEDIVKLQVLN 486
L++A+ V++ D + LN
Sbjct: 732 LEVVLNTLQQASQAQVDKSDYDMVDYLN 759
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 34.3 bits (77), Expect = 0.047
Identities = 47/446 (10%), Positives = 116/446 (26%), Gaps = 39/446 (8%)
Query: 15 DASDLFPAVVKNVVSKNIEVKKLVYVYL-----ARYAEEQQDLALLSISTFQRALKDPNQ 69
D ++ V+ + S++ + L + L A + + S + D +
Sbjct: 43 DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSP 102
Query: 70 LIRASALRVLSSI-------RVPMIIPIVMLAIKDSSLDMSPYVRKTAAHAIPKLYS--- 119
LIRA+ ++++I P ++P + + + A A+ K+
Sbjct: 103 LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE----DYNTCEGAFGALQKICEDSA 158
Query: 120 --LDPEQKE----ELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKL---- 169
LD + + ++ + + + + AV + R +
Sbjct: 159 EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENL 218
Query: 170 CNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSSEDDDDLDGEDKKPFYDDETTRD 229
L D + + + L + + + ++ ++ DE
Sbjct: 219 FALAGDEEPEVRKNVCRALVMLLEVRM------DRLLPHMHNIVEYMLQRTQDQDENVAL 272
Query: 230 TKNETSQVSTELDPDHRLLLKNAKPLLQSRNAAVVMAVAQLFHHLAPRREVAIIAKA--- 286
E E +L+++ L+ + + + E I +
Sbjct: 273 EACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQD 332
Query: 287 -LVRLLRSSREVQTVVLTTIASLAVKRRALFVPYLKSFYVRSSDPTHVKTLKLELLTTLA 345
R RS Q I + S + + +
Sbjct: 333 IRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDEL 392
Query: 346 SETSIASILREFQTYISSVDKAFVAATVQAIGKCAANIAQVTDTCLTGLVSLLSYSDEAV 405
+ + + V ++ + C + + L+ LS V
Sbjct: 393 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 452
Query: 406 VAESVVVIKNLLQTQPEAYTDIIRHM 431
+ + + D
Sbjct: 453 RSITCWTLSRYAHWVVSQPPDTYLKP 478
Score = 32.4 bits (72), Expect = 0.22
Identities = 8/111 (7%), Positives = 29/111 (26%), Gaps = 5/111 (4%)
Query: 50 QDLALLSISTFQRALKDPNQLIRASALRVLSSIRVPMIIPIVMLAIKDSSLDMSPYVRKT 109
+ L I + + P+ I+ + + L + ++ + R
Sbjct: 6 DEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSL 65
Query: 110 AAHAIPKLYS-----LDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVC 155
+ + + + + D + L+ + + +
Sbjct: 66 SGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIA 116
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId:
5759]}
Length = 77
Score = 30.4 bits (68), Expect = 0.11
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 7/50 (14%)
Query: 126 EELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVD 175
L+ +E LL K V ++ + LC ++D
Sbjct: 9 TGLINTLENLLTTKGADKV-------KDYISSLCNKASGFIATLCTKVLD 51
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 29.1 bits (64), Expect = 0.54
Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 32/115 (27%)
Query: 64 LKDPNQLIRASALRVLSSIRVPMIIPIVML--------------------------AIKD 97
+ D N+ +R LS + P++ +
Sbjct: 1 MADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIK 60
Query: 98 SSLDMSPYVRKTAAHAIPKLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFE 152
D S +VR AA ++ ++ E + +EKL + T AV E
Sbjct: 61 LLEDDSGFVRSGAARSLEQI------GGERVRAAMEKLAETGTGFARKVAVNYLE 109
>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 87
Score = 28.7 bits (64), Expect = 0.57
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 436 DSITVP--TARAAILWLLGEYSHLVPAL-GPDVLRKAAITFVNEEDIVKLQVLNLAPVEA 492
+ +P T + L+ Y L L + L + F+ D+ LQ L+
Sbjct: 16 SQLELPGATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPG 75
Query: 493 AGITTLPP 500
A + PP
Sbjct: 76 ATLDLFPP 83
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 29.4 bits (64), Expect = 1.4
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 394 LVSLLSYSDEAVVAESVVVIKNLLQTQPEAYTDI-----IRHMVRLSDSITVPTARAAIL 448
V LS DE A I++ A + I +V L S +AA
Sbjct: 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA- 65
Query: 449 WLLGEYSH 456
L
Sbjct: 66 GALRNLVF 73
Score = 28.3 bits (61), Expect = 3.8
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 360 YISSVDKAFVAATVQAIGKCAANIAQVTDT-----CLTGLVSLLSYSDEAVVAESVVVIK 414
Y+SS D+ + A I + LV LL ++ V + ++
Sbjct: 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALR 69
Query: 415 NLLQTQPEAYTDI-----IRHMVRLSDSITVPTARAAILWLLGEYSH 456
NL+ + IR V L + + LL S
Sbjct: 70 NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 176
Score = 28.5 bits (63), Expect = 1.7
Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 21/155 (13%)
Query: 155 CPERIDM-------IHKSYRKLCNLLVDVDEWGQVFILNMLTRYARTQFTDPNLNENDSS 207
C + + + R + ++ G I TR +++ PNL +
Sbjct: 15 CSQFLGLCALPGCKFKDVRRNVQKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQ 74
Query: 208 EDDDDLDGEDKKPFYDDETTRDTKNETSQVSTELDPDHRLLLKNAKPLL---QSRNAAVV 264
P D T + + ++ L K L+ + +
Sbjct: 75 CGIITHHH----PIADGGT-----PDIASCCEIMEELTTCLKNYRKTLIHSYGGLGRSCL 125
Query: 265 MAVAQLFHHLAPRREVAIIAKALVRLLRSSREVQT 299
+A L + A +R LR S +QT
Sbjct: 126 VAACLLLYLS--DTISPEQAIDSLRDLRGSGAIQT 158
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 29.1 bits (63), Expect = 1.7
Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 20/129 (15%)
Query: 51 DLALLSISTFQRALKDPNQLIRASALRVLSSI-----------RVPMIIPIVMLAIKDSS 99
+LA +I + L D +Q++ A ++ + R P ++ ++ +++++
Sbjct: 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72
Query: 100 LDMSPYVRKTAAHAIPKLYSLDPEQKEEL-----VLVIEKLLQDKTTLVVGSAVMAFEEV 154
+ A + L S E + + + K+L V+ A+ +
Sbjct: 73 ---DVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 128
Query: 155 CPERIDMIH 163
+
Sbjct: 129 LLHQEGAKM 137
>d1w5sa1 a.4.5.11 (A:300-409) CDC6-like protein APE0152, C-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 110
Score = 27.5 bits (61), Expect = 2.0
Identities = 11/65 (16%), Positives = 23/65 (35%)
Query: 116 KLYSLDPEQKEELVLVIEKLLQDKTTLVVGSAVMAFEEVCPERIDMIHKSYRKLCNLLVD 175
+L +L + L L+ E L + G +E+ ++ + Y + L
Sbjct: 3 ELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKH 62
Query: 176 VDEWG 180
+ G
Sbjct: 63 LTSLG 67
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 28.3 bits (63), Expect = 2.6
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 119 SLDPEQKEELVLVIEKLLQDKTTLVV 144
+LD E + + +++L +++T+LV+
Sbjct: 182 ALDTESERAIQAALDELQKNRTSLVI 207
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo
sapiens), fibroblast [TaxId: 9606]}
Length = 65
Score = 25.9 bits (57), Expect = 3.6
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 8/42 (19%)
Query: 319 YLKSFYVRSSDPTHVKTLKLELLTTLASETSIASILREFQTY 360
YL+++Y D K + +RE Q +
Sbjct: 5 YLENYYDLKKDVKQFVRRK--------DSGPVVKKIREMQKF 38
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 27.6 bits (61), Expect = 4.4
Identities = 5/26 (19%), Positives = 16/26 (61%)
Query: 119 SLDPEQKEELVLVIEKLLQDKTTLVV 144
+LD E + ++ + K+ + +T +++
Sbjct: 169 ALDYESEHVIMRNMHKICKGRTVIII 194
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 26.8 bits (58), Expect = 9.3
Identities = 8/67 (11%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 94 AIKDSSLDM----SPYVRKTAAHAIPKLYSLD-PEQKEELVLVIEKLLQDKTTLVVGSAV 148
IK + + ++ AI + D P++ L+ + L + + +
Sbjct: 85 LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVL 144
Query: 149 MAFEEVC 155
+
Sbjct: 145 TVAHSIF 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.370
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,196,477
Number of extensions: 98600
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 35
Length of query: 645
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 554
Effective length of database: 1,158,166
Effective search space: 641623964
Effective search space used: 641623964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)