BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8268
(61 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 53
+VKL+L P++T L Q +LSLA D N D+RDR + +LL P
Sbjct: 488 IVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 53
+VKL+L P++T L Q +LSLA D N D+RDR + +LL P
Sbjct: 488 IVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYD-QNYDIRDRARLLRQLLFPAPGA 55
+VKL+L P +T L Q +LSLA D N D+RDR + +LL P A
Sbjct: 488 IVKLFLKKPTETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVA 536
>pdb|3NFZ|A Chain A, Crystal Structure Of Murine Aminoacylase 3 In Complex With
N-Acetyl-L- Tyrosine
pdb|3NH5|A Chain A, Crystal Structure Of E177a-Mutant Murine Aminoacylase 3
pdb|3NH8|A Chain A, Crystal Structure Of Murine Aminoacylase 3 In Complex With
N-Acetyl-S- 1,2-Dichlorovinyl-L-Cysteine
Length = 327
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 14/61 (22%)
Query: 13 LTNPAQTTLLCQY-------------LLSLARYDQNYDIRDRARLLRQLLFPAPGAEIIS 59
L NPA T C+Y L S A D Y+++ RAR L QLL P +
Sbjct: 61 LANPAATAACCRYLDRDLNRSCTLTFLGSTATPDDPYEVK-RARELNQLLGPKGTGQAFD 119
Query: 60 Y 60
+
Sbjct: 120 F 120
>pdb|3NH4|A Chain A, Crystal Structure Of Murine Aminoacylase 3
Length = 327
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 14/61 (22%)
Query: 13 LTNPAQTTLLCQY-------------LLSLARYDQNYDIRDRARLLRQLLFPAPGAEIIS 59
L NPA T C+Y L S A D Y+++ RAR L QLL P +
Sbjct: 61 LANPAATAACCRYLDRDLNRSCTLTFLGSTATPDDPYEVK-RARELNQLLGPKGTGQAFD 119
Query: 60 Y 60
+
Sbjct: 120 F 120
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide
Formyltransferase (Purn) In Complex With Ches From
Coxiella Burnetii
Length = 215
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 21 LLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEIISYF 61
L+CQ LS+ D ++ R L +++P E++S+F
Sbjct: 152 LICQARLSITPQDTPETLKTRVHALEHIIYP----EVLSWF 188
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 6 RRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEIISY 60
+ +V YL A C + LS AR ++ RL + +LF PG + SY
Sbjct: 210 KSLVTQYLN--ATGNRWCSWSLSQARLLTSFLPAQLLRLYQLMLFTLPGTPVFSY 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.143 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,628,168
Number of Sequences: 62578
Number of extensions: 39942
Number of successful extensions: 125
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 7
length of query: 61
length of database: 14,973,337
effective HSP length: 32
effective length of query: 29
effective length of database: 12,970,841
effective search space: 376154389
effective search space used: 376154389
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)