BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8268
(61 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13367|AP3B2_HUMAN AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2
Length = 1082
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
KLYLTN QT LL QY+LSLA+YDQNYDIRDRAR RQL+ P+
Sbjct: 547 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 589
>sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2
Length = 1082
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52
KLYLTN QT LL QY+LSLA+YDQNYDIRDRAR RQL+ P+
Sbjct: 547 KLYLTNSKQTKLLTQYVLSLAKYDQNYDIRDRARFTRQLIVPS 589
>sp|Q32PG1|AP3B1_BOVIN AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1
Length = 1084
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFP 51
KLYLTN QT LL QY+L+L +YDQNYDIRDR R +RQL+ P
Sbjct: 542 KLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVP 583
>sp|Q7YRF1|AP3B1_CANFA AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1
Length = 1091
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFP 51
KLYLTN QT LL QY+L+L +YDQNYDIRDR R +RQL+ P
Sbjct: 542 KLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVP 583
>sp|O00203|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3
Length = 1094
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFP 51
KLYLTN QT LL QY+L+L +YDQNYDIRDR R +RQL+ P
Sbjct: 542 KLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVP 583
>sp|Q9Z1T1|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=2
Length = 1105
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 10 KLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEIISYF 61
KLYLTN QT LL QY+L+L +YDQNYDIRDR R +RQL+ P + +S +
Sbjct: 543 KLYLTNSKQTKLLTQYILNLGKYDQNYDIRDRTRFIRQLIVPNEKSGALSKY 594
>sp|Q556J8|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1
PE=3 SV=1
Length = 1108
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 18 QTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAPGAEIIS 59
+ TL+ QY+L+LA++DQNYDIRD +R+L+ F + I+
Sbjct: 603 KITLMFQYVLNLAKFDQNYDIRDNSRMLKHFYFNTENTQSIN 644
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1
Length = 937
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 53
+VKL+L P++T L Q +LSLA D N D+RDR + +LL P
Sbjct: 488 IVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1
Length = 937
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 53
+VKL+L P++T L Q +LSLA D N D+RDR + +LL P
Sbjct: 488 IVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1
Length = 937
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 53
+VKL+L P++T L Q +LSLA D N D+RDR + +LL P
Sbjct: 488 IVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2
Length = 937
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 53
+VKL+L P++T L Q +LSLA D N D+RDR + +LL P
Sbjct: 488 IVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1
Length = 951
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 53
+VKL+L P++T L Q +LSLA D N D+RDR + +LL P
Sbjct: 488 IVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534
>sp|O13939|AP3B_SCHPO AP-3 complex subunit beta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl6 PE=1 SV=1
Length = 745
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 20 TLLCQYLLSLARYDQNYDIRDRARLLRQL 48
+LL Y+LSL +D +YD+RDRAR ++L
Sbjct: 525 SLLFNYVLSLIHFDMSYDLRDRARFYKEL 553
>sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1
Length = 949
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYD-QNYDIRDRARLLRQLLFPAPGA 55
+VKL+L P +T L Q +LSLA D N D+RDR + +LL P A
Sbjct: 488 IVKLFLKKPTETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVA 536
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2
Length = 943
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAPGA 55
+VKL+L P +T L Q +LSLA D N D+RDR + +LL P A
Sbjct: 488 IVKLFLKKPTETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVA 536
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2
Length = 949
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 8 MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAPGA 55
+VKL+L P +T L Q +LSLA D N D+RDR + +LL P A
Sbjct: 488 IVKLFLKKPTETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVA 536
>sp|Q9M2T1|AP3BA_ARATH AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2
SV=2
Length = 987
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 25 YLLSLARYDQNYDIRDRARLLRQLL 49
Y+ L YD +YDIRDR R L++LL
Sbjct: 486 YVFELGEYDLSYDIRDRTRFLKKLL 510
>sp|P46682|AP3B_YEAST AP-3 complex subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL6 PE=1 SV=2
Length = 809
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 26 LLSLARYDQNYDIRDRARLLRQLLFPAPGAEIIS 59
+L LA+YD +DIRDRAR++ LF + EI+S
Sbjct: 595 VLYLAKYDDEFDIRDRARMISS-LFDSGKYEIVS 627
>sp|Q759E2|AP3B_ASHGO AP-3 complex subunit beta OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL6 PE=3 SV=2
Length = 781
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 27 LSLARYDQNYDIRDRARLLRQLL 49
L LA++D YD+RDRAR+L +
Sbjct: 582 LQLAKFDDEYDVRDRARMLASIF 604
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.143 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,824,461
Number of Sequences: 539616
Number of extensions: 534722
Number of successful extensions: 1358
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 20
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)