Query psy8268
Match_columns 61
No_of_seqs 102 out of 148
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 22:59:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 98.0 2.5E-06 8.6E-11 62.3 2.0 50 4-53 484-534 (591)
2 2vgl_A Adaptor protein complex 97.8 5.5E-06 1.9E-10 61.9 1.6 49 3-52 540-590 (621)
3 1w63_A Adapter-related protein 96.8 0.00051 1.7E-08 50.7 2.4 48 4-52 531-578 (618)
4 2ltd_A Uncharacterized protein 26.7 20 0.00069 21.5 0.0 28 31-58 34-65 (80)
5 3dr0_A Cytochrome C6; photosyn 16.6 81 0.0028 16.2 1.8 18 14-31 72-89 (93)
6 2zon_G Cytochrome C551; nitrit 16.1 93 0.0032 16.2 2.0 18 14-31 70-87 (87)
7 1dm0_A Shiga toxin A subunit; 15.9 1.8E+02 0.0063 20.1 4.0 30 19-48 132-161 (287)
8 3mvg_A IRIP, ribosome inactiva 15.8 1.7E+02 0.0059 20.3 3.8 30 19-48 126-155 (275)
9 2l3a_A Uncharacterized protein 14.3 17 0.00057 21.9 -1.5 9 32-40 37-45 (82)
10 4g06_A Uncharacterized protein 13.5 23 0.0008 21.1 -1.0 9 32-40 42-50 (79)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.96 E-value=2.5e-06 Score=62.34 Aligned_cols=50 Identities=42% Similarity=0.594 Sum_probs=44.2
Q ss_pred eeeeehhhhhcCchhHHHHHHHHHHhhccc-CCcchhHHHHHHHHHhCCCC
Q psy8268 4 ACRRMVKLYLTNPAQTTLLCQYLLSLARYD-QNYDIRDRARLLRQLLFPAP 53 (61)
Q Consensus 4 ~L~LaAKL~~~~~~~~~~l~~yvl~LakyD-~~yDiRDRaRfl~~Ll~~~~ 53 (61)
+|+..+|++...|+....+.+++|+.+.+| .|+||||||+++..|+..++
T Consensus 484 ~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~ 534 (591)
T 2vgl_B 484 LLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534 (591)
T ss_dssp HHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCT
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCH
Confidence 567889999999987778999999999998 89999999999999997643
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.80 E-value=5.5e-06 Score=61.90 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=43.1
Q ss_pred eeeeeehhhhhcCchhHHHHHHHHHHhhcc--cCCcchhHHHHHHHHHhCCC
Q psy8268 3 VACRRMVKLYLTNPAQTTLLCQYLLSLARY--DQNYDIRDRARLLRQLLFPA 52 (61)
Q Consensus 3 ~~L~LaAKL~~~~~~~~~~l~~yvl~Laky--D~~yDiRDRaRfl~~Ll~~~ 52 (61)
.+|+.++|++...|+ .....+++|+.+.+ |.|+||||||+++..|+..+
T Consensus 540 ~~Lta~~Kl~~~~p~-~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 540 LLLSTYIKFVNLFPE-VKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp HHHHHHHHHHHHCGG-GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHChH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 357888999998886 46789999999999 99999999999999999754
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.82 E-value=0.00051 Score=50.74 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=39.7
Q ss_pred eeeeehhhhhcCchhHHHHHHHHHHhhcccCCcchhHHHHHHHHHhCCC
Q psy8268 4 ACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPA 52 (61)
Q Consensus 4 ~L~LaAKL~~~~~~~~~~l~~yvl~LakyD~~yDiRDRaRfl~~Ll~~~ 52 (61)
+|+..+|++...|+. ....+.+|..+..|.|.||||||+++..|+...
T Consensus 531 ~lta~~Kl~~~~~~~-~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~ 578 (618)
T 1w63_A 531 ALTAIMKLSTRFTCT-VNRIKKVVSIYGSSIDVELQQRAVEYNALFKKY 578 (618)
T ss_dssp HHHHHHHHHTTCSSC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcch-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCc
Confidence 466778999998865 556677888888889999999999999998763
No 4
>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}
Probab=26.72 E-value=20 Score=21.47 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=19.5
Q ss_pred cccCCcchh----HHHHHHHHHhCCCCCCccc
Q psy8268 31 RYDQNYDIR----DRARLLRQLLFPAPGAEII 58 (61)
Q Consensus 31 kyD~~yDiR----DRaRfl~~Ll~~~~~~~~~ 58 (61)
-.++-|||| |..+|=+.+.-+.++-..|
T Consensus 34 g~~pKyDIR~Wspdh~kMGKGITLT~eE~~~L 65 (80)
T 2ltd_A 34 DAEPKYDIRTWSPDHEKMGKGITLSEEEFGVL 65 (80)
Confidence 457889999 5677777776666665443
No 5
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=16.57 E-value=81 Score=16.22 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=13.9
Q ss_pred cCchhHHHHHHHHHHhhc
Q psy8268 14 TNPAQTTLLCQYLLSLAR 31 (61)
Q Consensus 14 ~~~~~~~~l~~yvl~Lak 31 (61)
..++++..|..||.+++.
T Consensus 72 ls~~ei~~l~~yl~~l~~ 89 (93)
T 3dr0_A 72 LSDADIANVAAYIADQAE 89 (93)
T ss_dssp BCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 345678899999998874
No 6
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=16.07 E-value=93 Score=16.18 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=13.9
Q ss_pred cCchhHHHHHHHHHHhhc
Q psy8268 14 TNPAQTTLLCQYLLSLAR 31 (61)
Q Consensus 14 ~~~~~~~~l~~yvl~Lak 31 (61)
..++++..|..||.++++
T Consensus 70 ls~~ei~~l~~yl~~~~~ 87 (87)
T 2zon_G 70 ADEATLRAAVAYMMDAAR 87 (87)
T ss_dssp CCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 356678899999988764
No 7
>1dm0_A Shiga toxin A subunit; AB5 structure, polypeptide A, blocking, active site; 2.50A {Shigella dysenteriae} SCOP: d.165.1.2 PDB: 1r4q_A
Probab=15.92 E-value=1.8e+02 Score=20.07 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcccCCcchhHHHHHHHHH
Q psy8268 19 TTLLCQYLLSLARYDQNYDIRDRARLLRQL 48 (61)
Q Consensus 19 ~~~l~~yvl~LakyD~~yDiRDRaRfl~~L 48 (61)
...|-+.+-.|++|+.+.+..+.||++-.+
T Consensus 132 ~~~L~~Ai~~L~~y~~~~~~~~~ar~Llv~ 161 (287)
T 1dm0_A 132 RHSLTTSYLDLMSHSGTSLTQSVARAMLRF 161 (287)
T ss_dssp HHHHHHHHHHHHTCCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCchHHHHHHHHHH
Confidence 688999999999999998899999987543
No 8
>3mvg_A IRIP, ribosome inactivating type 1 protein; ribosome inactivating protein type I, PI-loop, hydrola; HET: GOL; 1.25A {Iris hollandica}
Probab=15.84 E-value=1.7e+02 Score=20.26 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcccCCcchhHHHHHHHHH
Q psy8268 19 TTLLCQYLLSLARYDQNYDIRDRARLLRQL 48 (61)
Q Consensus 19 ~~~l~~yvl~LakyD~~yDiRDRaRfl~~L 48 (61)
...|-..+-.|++||.+-+-++.||+|-.+
T Consensus 126 ~~~L~~Ai~~L~~~~~~~~~~~~AraLlv~ 155 (275)
T 3mvg_A 126 INPLATAITTLHNWSPPTVETSVARSLIVL 155 (275)
T ss_dssp HHHHHHHHHHHHHCCTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHH
Confidence 578999999999999899999999987543
No 9
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=14.33 E-value=17 Score=21.92 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=6.3
Q ss_pred ccCCcchhH
Q psy8268 32 YDQNYDIRD 40 (61)
Q Consensus 32 yD~~yDiRD 40 (61)
.++-|||||
T Consensus 37 ~~pKyDIR~ 45 (82)
T 2l3a_A 37 APAKFDIRA 45 (82)
T ss_dssp SCEEEEEEE
T ss_pred CCCCccccc
Confidence 356688886
No 10
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=13.53 E-value=23 Score=21.10 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=6.7
Q ss_pred ccCCcchhH
Q psy8268 32 YDQNYDIRD 40 (61)
Q Consensus 32 yD~~yDiRD 40 (61)
.++-|||||
T Consensus 42 ~~pKyDIR~ 50 (79)
T 4g06_A 42 APAKFDIRA 50 (79)
T ss_dssp CCCEEEEEE
T ss_pred CCCCccccc
Confidence 457788886
Done!