RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8268
         (61 letters)



>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
           splicing, endocytosis, lipid-binding, golgi apparatus,
           adaptor, membrane, transport; HET: IHP; 2.59A {Homo
           sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
           1w63_B
          Length = 591

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 8   MVKLYLTNPAQTTLLCQYLLSLARYDQ-NYDIRDRARLLRQLLFPAP 53
           +VKL+L  P++T  L Q +LSLA  D  N D+RDR  +  +LL   P
Sbjct: 488 IVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534


>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
           clathrin adaptor, transport, coated PITS; 4.0A {Mus
           musculus} SCOP: i.23.1.1
          Length = 618

 Score = 26.0 bits (57), Expect = 0.77
 Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 8   MVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLL 49
           ++KL          + + ++S+     + +++ RA     L 
Sbjct: 535 IMKLSTRFTCTVNRIKK-VVSIYGSSIDVELQQRAVEYNALF 575


>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like
           domains; structural genomics; HET: MSE CSX; 1.90A
           {Anabaena variabilis atcc 29413}
          Length = 365

 Score = 25.9 bits (57), Expect = 0.87
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 13  LTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQLLFPAP 53
            T+P  T +  +    L +Y+Q      R R    +  P P
Sbjct: 317 YTDPIATAIFKEIYKDLVKYEQRLVSLYRTRTNATVQPPKP 357


>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural
          genomics, center for structural genomics of infec
          diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1
          biovar eltor} PDB: 3ect_A*
          Length = 195

 Score = 24.0 bits (53), Expect = 2.8
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 29 LARYDQNYDIRDRARLLRQLL 49
              +Q+ D  +R  L R+L 
Sbjct: 36 KLEINQSLDEAERYALQRELF 56


>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
           regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
           c.37.1.19 PDB: 1xtj_A* 1xtk_A
          Length = 391

 Score = 22.9 bits (50), Expect = 8.0
 Identities = 6/36 (16%), Positives = 16/36 (44%)

Query: 1   MPVACRRMVKLYLTNPAQTTLLCQYLLSLARYDQNY 36
           +    R + + ++ +P +  +  +  L+L    Q Y
Sbjct: 194 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 229


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.143    0.433 

Gapped
Lambda     K      H
   0.267   0.0826    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 937,859
Number of extensions: 39152
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 6
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.2 bits)