RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8268
         (61 letters)



>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 28.2 bits (62), Expect = 0.038
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 9   VKLYLTNPAQTTLLCQYLLS 28
           VKL+L  P++T  L Q +LS
Sbjct: 486 VKLFLKKPSETQELVQQVLS 505


>d2f99a1 d.17.4.9 (A:2-141) Aklanonic acid methyl ester cyclase,
           AknH {Streptomyces galilaeus [TaxId: 33899]}
          Length = 140

 Score = 23.6 bits (50), Expect = 1.5
 Identities = 8/23 (34%), Positives = 9/23 (39%)

Query: 34  QNYDIRDRARLLRQLLFPAPGAE 56
            + D  D     RQL  P P  E
Sbjct: 117 HHRDWPDYQGTYRQLGEPWPETE 139


>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
          fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 198

 Score = 22.9 bits (49), Expect = 3.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 21 LLCQYLLSLARYDQNYDIRDRARLLRQLL 49
           L  YL+   + DQ  D+R+    +++L 
Sbjct: 50 RLINYLVEEFKKDQGIDLRNDPLAMQRLK 78


>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 261

 Score = 22.5 bits (48), Expect = 4.9
 Identities = 11/42 (26%), Positives = 14/42 (33%)

Query: 6  RRMVKLYLTNPAQTTLLCQYLLSLARYDQNYDIRDRARLLRQ 47
          R + K  L   +QT  L   L  L   D        + LL  
Sbjct: 12 RLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAA 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.143    0.433 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 223,068
Number of extensions: 7229
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 4
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.1 bits)