BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8269
(386 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial
OS=Rattus norvegicus GN=Parl PE=2 SV=1
Length = 377
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 119/179 (66%), Gaps = 5/179 (2%)
Query: 213 NP-DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASL 271
NP + L PMLLSTFSH S H+ ANM+VL SF S V LG+EQFV YL+AGV+++
Sbjct: 197 NPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQFVAVYLSAGVISNF 256
Query: 272 LSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLL 331
+SYV K+ + G S+GASGAIM VLA C P+ L I+F+P F+A +A++ I+ +
Sbjct: 257 VSYVCKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIFLPVFTFTAGNALKAIIAM 316
Query: 332 DFLGVLFRWRLFDHAAHLGGALFGILYSKYG-EQTWAHRAPVVEYWKSLKK---QIGGG 386
D G++ W+ FDHAAHLGGALFGI Y YG E W +R P+V+ W ++ + GGG
Sbjct: 317 DTAGMILGWKFFDHAAHLGGALFGIWYITYGHELIWKNREPLVKIWHEIRTNGPKKGGG 375
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 22 RKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQS 72
RK++ K WN+L G R I+ N +VF W P LH + +YF SNP S
Sbjct: 150 RKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPSLHRTMIRYFTSNPAS 200
>sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus
musculus GN=Parl PE=1 SV=1
Length = 377
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 119/179 (66%), Gaps = 5/179 (2%)
Query: 213 NP-DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASL 271
NP + L PMLLSTFSH S H+ ANM+VL SF S V LG+EQFV YL+AGV+++
Sbjct: 197 NPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFVAVYLSAGVISNF 256
Query: 272 LSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLL 331
+SYV K+ + G S+GASGAIM VLA C P+ L I+F+P F+A +A++ I+ +
Sbjct: 257 VSYVCKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIFLPVFTFTAGNALKAIIAM 316
Query: 332 DFLGVLFRWRLFDHAAHLGGALFGILYSKYG-EQTWAHRAPVVEYWKSLKK---QIGGG 386
D G++ W+ FDHAAHLGGALFGI Y YG E W +R P+V+ W ++ + GGG
Sbjct: 317 DTAGMILGWKFFDHAAHLGGALFGIWYITYGHELIWKNREPLVKIWHEIRTNGPKKGGG 375
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 22 RKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQS 72
RK++ K WN+L G R I+ N +VF W P L + +YF SNP S
Sbjct: 150 RKEINKWWNSLSDGQRTVTGIIAANALVFCLWRVPSLQRTMIRYFTSNPAS 200
>sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos
taurus GN=PARL PE=2 SV=1
Length = 377
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 119/179 (66%), Gaps = 5/179 (2%)
Query: 213 NP-DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASL 271
NP + L PMLLSTFSH S H+ ANM+VL SF S V LG+EQF+ YL+AGV+++
Sbjct: 197 NPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISTF 256
Query: 272 LSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLL 331
+SYV K+ + G S+GASGAIM VLA C P+ L I+F+P F+A +A++ I+ +
Sbjct: 257 VSYVCKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIFLPMFTFTAGNALKAIIAM 316
Query: 332 DFLGVLFRWRLFDHAAHLGGALFGILYSKYG-EQTWAHRAPVVEYWKSLKK---QIGGG 386
D G++ W+ FDHAAHLGGALFGI Y YG E W +R P+V+ W ++ + GGG
Sbjct: 317 DTAGMILGWKFFDHAAHLGGALFGIWYITYGHELIWKNREPLVKIWHEMRTNSPKKGGG 375
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 22 RKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQS 72
RK++ K WN L G R I+ N VF W P L + +YF SNP S
Sbjct: 150 RKEINKWWNNLSDGQRTVTGIIAANVFVFCLWRVPSLQRTMIRYFTSNPAS 200
>sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial
OS=Pongo abelii GN=PARL PE=2 SV=1
Length = 379
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 119/179 (66%), Gaps = 5/179 (2%)
Query: 213 NP-DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASL 271
NP + L PMLLSTFSH S H+ ANM+VL SF S V LG+EQF+ YL+AGV+++
Sbjct: 199 NPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNF 258
Query: 272 LSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLL 331
+SYV K+ + G S+GASGAIM VLA C P+ L I+F+P F+A +A++ I+ +
Sbjct: 259 VSYVGKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIFLPMFTFTAGNALKAIIAM 318
Query: 332 DFLGVLFRWRLFDHAAHLGGALFGILYSKYG-EQTWAHRAPVVEYWKSLKK---QIGGG 386
D G++ W+ FDHAAHLGGALFGI Y YG E W +R P+V+ W ++ + GGG
Sbjct: 319 DTAGMILGWKFFDHAAHLGGALFGIWYVTYGHELIWKNREPLVKIWHEIRTNGPKKGGG 377
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 22 RKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQS 72
RK++ K WN L G R I+ N +VF W P L + +YF SNP S
Sbjct: 152 RKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIRYFTSNPAS 202
>sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo
sapiens GN=PARL PE=1 SV=2
Length = 379
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/179 (49%), Positives = 119/179 (66%), Gaps = 5/179 (2%)
Query: 213 NP-DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASL 271
NP + L PMLLSTFSH S H+ ANM+VL SF S V LG+EQF+ YL+AGV+++
Sbjct: 199 NPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNF 258
Query: 272 LSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLL 331
+SYV K+ + G S+GASGAIM VLA C P+ L I+F+P F+A +A++ I+ +
Sbjct: 259 VSYVGKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIFLPMFTFTAGNALKAIIAM 318
Query: 332 DFLGVLFRWRLFDHAAHLGGALFGILYSKYG-EQTWAHRAPVVEYWKSLKK---QIGGG 386
D G++ W+ FDHAAHLGGALFGI Y YG E W +R P+V+ W ++ + GGG
Sbjct: 319 DTAGMILGWKFFDHAAHLGGALFGIWYVTYGHELIWKNREPLVKIWHEIRTNGPKKGGG 377
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 22 RKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQS 72
RK++ K WN L G R I+ N +VF W P L + +YF SNP S
Sbjct: 152 RKEINKWWNNLSDGQRTVTGIIAANVLVFCLWRVPSLQRTMIRYFTSNPAS 202
>sp|Q5RA23|NFYC_PONAB Nuclear transcription factor Y subunit gamma OS=Pongo abelii
GN=NFYC PE=2 SV=1
Length = 335
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 102/128 (79%), Gaps = 5/128 (3%)
Query: 92 RSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHE 151
+SF+ V+E L++ D + Q LPLARIKKIMKLD+ VKMISAEAP+LF+KAA++FI E
Sbjct: 20 QSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITE 79
Query: 152 LTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATK-- 209
LT+RAWIHTEDNKRRTLQRNDIAMAITK+D FDFLIDIVPR+E+K P R++D +
Sbjct: 80 LTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELKP---PKRQEDVRQSV 136
Query: 210 TALNPDQY 217
T P QY
Sbjct: 137 TPAEPVQY 144
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens
GN=NFYC PE=1 SV=3
Length = 458
Score = 168 bits (425), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 100/123 (81%), Gaps = 4/123 (3%)
Query: 92 RSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHE 151
+SF+ V+E L++ D + Q LPLARIKKIMKLD+ VKMISAEAP+LF+KAA++FI E
Sbjct: 20 QSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITE 79
Query: 152 LTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTA 211
LT+RAWIHTEDNKRRTLQRNDIAMAITK+D FDFLIDIVPR+E+K P +R + + +
Sbjct: 80 LTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK----PPKRQEEVRQS 135
Query: 212 LNP 214
+ P
Sbjct: 136 VTP 138
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus
GN=Nfyc PE=2 SV=1
Length = 335
Score = 167 bits (424), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 100/123 (81%), Gaps = 4/123 (3%)
Query: 92 RSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHE 151
+SF+ V+E L++ D + Q LPLARIKKIMKLD+ VKMISAEAP+LF+KAA++FI E
Sbjct: 20 QSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITE 79
Query: 152 LTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTA 211
LT+RAWIHTEDNKRRTLQRNDIAMAITK+D FDFLIDIVPR+E+K P +R + + +
Sbjct: 80 LTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK----PPKRQEEVRQS 135
Query: 212 LNP 214
+ P
Sbjct: 136 VTP 138
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus
GN=Nfyc PE=2 SV=2
Length = 335
Score = 167 bits (424), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 100/123 (81%), Gaps = 4/123 (3%)
Query: 92 RSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHE 151
+SF+ V+E L++ D + Q LPLARIKKIMKLD+ VKMISAEAP+LF+KAA++FI E
Sbjct: 20 QSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITE 79
Query: 152 LTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTA 211
LT+RAWIHTEDNKRRTLQRNDIAMAITK+D FDFLIDIVPR+E+K P +R + + +
Sbjct: 80 LTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK----PPKRQEEVRQS 135
Query: 212 LNP 214
+ P
Sbjct: 136 VTP 138
>sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC
PE=2 SV=1
Length = 335
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 100/123 (81%), Gaps = 4/123 (3%)
Query: 92 RSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHE 151
+SF+ V+E L++ D + Q LPLARIKKIMKLD+ VKMISAEAP+LF+KAA++FI E
Sbjct: 20 QSFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITE 79
Query: 152 LTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTA 211
LT+RAWIHTEDNKRRTLQRNDIAMAITK+D FDFLIDIVPR+E+K P +R + + +
Sbjct: 80 LTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK----PPKRQEEVRQS 135
Query: 212 LNP 214
+ P
Sbjct: 136 VTP 138
>sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial
OS=Danio rerio GN=parl PE=2 SV=1
Length = 383
Score = 165 bits (417), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 2/171 (1%)
Query: 213 NP-DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASL 271
NP + +PM+LS+FSH S +H+ NM+VL +F S V LG+EQF+ YL+ GV+++
Sbjct: 200 NPASKTRCLPMVLSSFSHYSVIHMVVNMYVLWTFSSSIVSLLGREQFLALYLSGGVISTF 259
Query: 272 LSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLL 331
+SYV K + G S+GASG+IM VLA C P+ +LGI+ +P + FSA +A++ ++ L
Sbjct: 260 VSYVFKTATGRLGPSLGASGSIMTVLAAVCTKIPEAKLGIVLLPVISFSAGNALKALVAL 319
Query: 332 DFLGVLFRWRLFDHAAHLGGALFGILYSKYG-EQTWAHRAPVVEYWKSLKK 381
D G++ WR FDHAAHLGGALFG+ Y YG E W R P++++W L+
Sbjct: 320 DIAGLVLGWRFFDHAAHLGGALFGVWYIGYGHELIWRKREPLIKFWHELRN 370
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 29 WNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQS 72
W+ L G + I+ LN VV W P + L KYF SNP S
Sbjct: 160 WSGLSEGQKTVTGIIALNTVVLCCWRVPAMQRFLVKYFTSNPAS 203
>sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana
GN=NFYC4 PE=2 SV=1
Length = 250
Score = 141 bits (356), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 77/88 (87%)
Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
D K LPLARIKKIMK D+ V+MISAEAP+LF+KA ELFI ELTIR+W+H E+NKRRTL
Sbjct: 73 DFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTL 132
Query: 169 QRNDIAMAITKYDMFDFLIDIVPREEVK 196
Q+NDIA AIT+ D+FDFL+DIVPREE+K
Sbjct: 133 QKNDIAAAITRTDIFDFLVDIVPREEIK 160
>sp|Q9SMP0|NFYC1_ARATH Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana
GN=NFYC1 PE=1 SV=1
Length = 234
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 77/88 (87%)
Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
D K LPLARIKKIMK D+ V+MISAEAP+LF+KA ELFI ELTIR+W+H E+NKRRTL
Sbjct: 60 DFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTL 119
Query: 169 QRNDIAMAITKYDMFDFLIDIVPREEVK 196
Q+NDIA AIT+ D+FDFL+DIVPR+E+K
Sbjct: 120 QKNDIAAAITRTDIFDFLVDIVPRDEIK 147
>sp|Q8LCG7|NFYC2_ARATH Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana
GN=NFYC2 PE=2 SV=2
Length = 199
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 78/88 (88%)
Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
D K LPLARIKKIMK D+ V+MISAEAP++F+KA E+FI ELT+RAWIHTE+NKRRTL
Sbjct: 71 DFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTL 130
Query: 169 QRNDIAMAITKYDMFDFLIDIVPREEVK 196
Q+NDIA AI++ D+FDFL+DI+PR+E+K
Sbjct: 131 QKNDIAAAISRTDVFDFLVDIIPRDELK 158
>sp|Q9ZVL3|NFYC3_ARATH Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana
GN=NFYC3 PE=2 SV=1
Length = 217
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 78/88 (88%)
Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
D K +LPLARIKKIMK D+ V+MISAEAP++F++A E+FI ELT+R+W HTE+NKRRTL
Sbjct: 65 DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTL 124
Query: 169 QRNDIAMAITKYDMFDFLIDIVPREEVK 196
Q+NDIA A+T+ D+FDFL+DIVPRE+++
Sbjct: 125 QKNDIAAAVTRTDIFDFLVDIVPREDLR 152
>sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana
GN=NFYC9 PE=2 SV=1
Length = 231
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 78/88 (88%)
Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
D K +LPLARIKKIMK D+ V+MISAEAP++F++A E+FI ELT+R+W HTE+NKRRTL
Sbjct: 75 DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTL 134
Query: 169 QRNDIAMAITKYDMFDFLIDIVPREEVK 196
Q+NDIA A+T+ D+FDFL+DIVPRE+++
Sbjct: 135 QKNDIAAAVTRTDIFDFLVDIVPREDLR 162
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP5 PE=1 SV=1
Length = 242
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 71/90 (78%)
Query: 103 GALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTED 162
G+ D K+ +LP ARI+K+MK D+ VKMISAEAP++F+KA E+FI ELT+RAW E
Sbjct: 148 GSEHQDDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVAER 207
Query: 163 NKRRTLQRNDIAMAITKYDMFDFLIDIVPR 192
NKRRTLQ+ DIA A+ K DMFDFLID+VPR
Sbjct: 208 NKRRTLQKADIAEALQKSDMFDFLIDVVPR 237
>sp|Q557I1|NFYC_DICDI Nuclear transcription factor Y subunit gamma OS=Dictyostelium
discoideum GN=nfyc-1 PE=3 SV=1
Length = 684
Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 81/112 (72%), Gaps = 6/112 (5%)
Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
D KT LPLARIKKIMK D V IS+EAP+LF+KA E+ I E+T R+W+HTE NKRRTL
Sbjct: 265 DFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTL 324
Query: 169 QRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRR--DDATKTALNPDQYL 218
QR DI ++++ + FDFLID++PR+E+K P R+ D+ +K + +YL
Sbjct: 325 QRTDIINSLSRCETFDFLIDMLPRDEIK----PSRKYLDELSKAQVITPEYL 372
>sp|P79007|HAP5_SCHPO Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap5 PE=2 SV=1
Length = 415
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
Query: 110 LKTQALPLARIKKIMKLDDGVK--MISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRT 167
+KT LPLARIKK+MK DD VK MISAEAP LF+K +E+FI ELT+RAW+H + N+RRT
Sbjct: 104 VKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQRRT 163
Query: 168 LQRNDIAMAITKYDMFDFLIDIVPREEVKT 197
LQR+DIA A++K +M+DFLIDI+ ++ +
Sbjct: 164 LQRSDIANAVSKSEMYDFLIDIISKDNNNS 193
>sp|O14364|YOHB_SCHPO Uncharacterized protein C13E7.11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC13E7.11 PE=4 SV=1
Length = 298
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 14/167 (8%)
Query: 212 LNPDQYLSVP-MLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVAS 270
+NP ++++P M++S FSHQS H+ NM +SF P+ V+ G QFV FY+++ + ++
Sbjct: 112 MNPI-FINMPSMIVSAFSHQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFYISSILFSN 170
Query: 271 LLSYVHKIL----VRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQ 326
+ S +H L PG S+GASGAI A+ A T P+ + I+F+P++ A+
Sbjct: 171 VASLLHHRLRFGTKVTPG-SLGASGAIYAIAAATSYFFPNASVSIIFLPFIPIKIGVALL 229
Query: 327 GIMLLDFLGVLFR-------WRLFDHAAHLGGALFGILYSKYGEQTW 366
G+M D G++ R + L DHAAHLGG +FG LY+KYG T+
Sbjct: 230 GLMAFDAWGLISRGFSSFANFTLIDHAAHLGGGIFGWLYAKYGYSTY 276
>sp|Q9FGP7|NFYC6_ARATH Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana
GN=NFYC6 PE=2 SV=1
Length = 202
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 69/93 (74%)
Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
D K + LPLARIKKIMK D V M+SAEAP++F+KA E+FI +LT+R+W+ E+NKR TL
Sbjct: 49 DFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTL 108
Query: 169 QRNDIAMAITKYDMFDFLIDIVPREEVKTATGP 201
Q++DI+ A+ +DFL+D+VP++E P
Sbjct: 109 QKSDISNAVASSFTYDFLLDVVPKDESIATADP 141
>sp|Q4PSE2|NFYC8_ARATH Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana
GN=NFYC8 PE=2 SV=1
Length = 187
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 9/154 (5%)
Query: 80 HAVSPEFDSRLGRSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPM 139
+ + P+ + +L +SF+ +E LD K LP+ RIKKIMK D V MI++EAP+
Sbjct: 8 NQLPPKGNEQL-KSFWSKEME-----GNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPI 61
Query: 140 LFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI---VPREEVK 196
L SKA E+FI +LT+R+W+H +++KR TLQ++++ A+ + +FDFL+D V RE V
Sbjct: 62 LLSKACEMFIMDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLDDDIEVKRESVA 121
Query: 197 TATGPHRRDDATKTALNPDQYLSVPMLLSTFSHQ 230
A P L P + P+ S HQ
Sbjct: 122 AAADPVAMPPIDDGELPPGMVIGTPVCCSLGIHQ 155
>sp|Q9FGP6|NFYC5_ARATH Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana
GN=NFYC5 PE=2 SV=1
Length = 186
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 74/112 (66%), Gaps = 5/112 (4%)
Query: 83 SPEFDSRLGRSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFS 142
P D+ +SF+ +G L++K P++RIK+IMK D V MI+AEAP L S
Sbjct: 10 QPPKDNEQLKSFWS-----KGMEGDLNVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLS 64
Query: 143 KAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREE 194
KA E+F+ +LT+R+W+H +++ R T++++D+ +++ +FDFL D VP++E
Sbjct: 65 KACEMFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDVPKDE 116
>sp|Q9FGP8|NFYC7_ARATH Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana
GN=NFYC7 PE=2 SV=1
Length = 212
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
D+K A PL RIKKIMK + V M++AEAP+L SKA E+ I +LT+R+W+HT + R+TL
Sbjct: 58 DVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTL 117
Query: 169 Q------RNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNPDQYLSVPM 222
+ R+DI+ A T+ F FL D+VPR+ P D L P + P+
Sbjct: 118 KRSDTLTRSDISAATTRSFKFTFLGDVVPRDPSVVTDDPVLHPDG--EVLPPGTVIGYPV 175
Query: 223 LLSTFSHQSPLHI 235
+ SP +
Sbjct: 176 FDCNGVYASPPQM 188
>sp|Q58CM8|NFYCA_ARATH Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana
GN=NFYC10 PE=2 SV=1
Length = 195
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 13/139 (9%)
Query: 56 PRLH---PVLYKYFASNPQSMGITLRLHAVSPEFDSRLGRSFFGSVLEVQGALSMLDLKT 112
PR H P+L ++ +++P+ T ++ VS D+ L + F+ + E G +
Sbjct: 16 PRSHNTMPMLDQFRSNHPE----TSKIEGVS-SLDTAL-KVFWNNQREQLGNFA----GQ 65
Query: 113 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRND 172
LPL+R++KI+K D VK IS + P LFSKA E FI E+T+RAW+HT+ R T++R D
Sbjct: 66 THLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQSCTRETIRRCD 125
Query: 173 IAMAITKYDMFDFLIDIVP 191
I A+ +DFLID VP
Sbjct: 126 IFQAVKNSGTYDFLIDRVP 144
>sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1
Length = 346
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 220 VPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKIL 279
+ ++ S FSHQ H+ NM L SF S LG F Y+ + + SL S + L
Sbjct: 184 ISIIGSAFSHQEFWHLGMNMLALWSFGTSLATMLGASNFFSLYMNSAIAGSLFSLWYPKL 243
Query: 280 VRKP--GLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVL 337
R G S+GASGA+ VL P ++ +LFV V A A + + G
Sbjct: 244 ARLAIVGPSLGASGALFGVLGCFSYLFPHAKI-LLFVFPVPGGAWVAFLASVAWNAAGCA 302
Query: 338 FRWRLFDHAAHLGGALFGILYSKY 361
RW FD+AAHLGG++ G+LY Y
Sbjct: 303 LRWGSFDYAAHLGGSMMGVLYGWY 326
>sp|Q9NR33|DPOE4_HUMAN DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2
Length = 117
Score = 62.0 bits (149), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 47/85 (55%)
Query: 102 QGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTE 161
Q S+ + LPLAR+K ++K D V + EA + ++AAELF+ + A+ +
Sbjct: 28 QAPTSVPGARLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQ 87
Query: 162 DNKRRTLQRNDIAMAITKYDMFDFL 186
KR+TLQR D+ AI D F FL
Sbjct: 88 QGKRKTLQRRDLDNAIEAVDEFAFL 112
>sp|Q9CQ36|DPOE4_MOUSE DNA polymerase epsilon subunit 4 OS=Mus musculus GN=Pole4 PE=3 SV=1
Length = 118
Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 110 LKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQ 169
++ LPLAR+K ++K D V + EA + ++AAELF+ + A+ + KR+TLQ
Sbjct: 37 VRLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQ 96
Query: 170 RNDIAMAITKYDMFDFL 186
R D+ AI D F FL
Sbjct: 97 RRDLDNAIEAVDEFAFL 113
>sp|A6QQ14|DPOE4_BOVIN DNA polymerase epsilon subunit 4 OS=Bos taurus GN=POLE4 PE=3 SV=1
Length = 116
Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
LPLAR+K ++K D V + EA + ++AAELF+ + A+ + KR+TLQR D+
Sbjct: 40 LPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRDLD 99
Query: 175 MAITKYDMFDFL 186
AI D F FL
Sbjct: 100 NAIEAVDEFAFL 111
>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dictyostelium discoideum
GN=drap1 PE=3 SV=1
Length = 550
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 116 PLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAM 175
P+ARIKKIM+ D+ V I++ P+L S+ ELF+ +L ++ T+ K + + N +
Sbjct: 10 PMARIKKIMQKDEEVGKIASATPILISQCLELFMADLVMKTCKITQAKKGKVISVNHLKE 69
Query: 176 AITKYDMFDFLIDIVPR 192
I + FDFL +IV R
Sbjct: 70 CIKQESTFDFLTEIVDR 86
>sp|Q9NRG0|CHRC1_HUMAN Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1
PE=1 SV=1
Length = 131
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 114 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 173
+LPL+RI+ IMK V I+ EA +L +KA ELF+ L ++ H +++ L +D+
Sbjct: 18 SLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDL 77
Query: 174 AMAITKYDMFDFLIDIVPRE 193
A + + F FL DI+P++
Sbjct: 78 ANTAQQSETFQFLADILPKK 97
>sp|C6Y4D0|YCGV_SCHPO Putative transcription factor C16C4.22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.22 PE=3 SV=1
Length = 87
Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
LPL+R+K+I+K D+ V S + +L S A ELF+ +L A+ + KR+ ++ D+
Sbjct: 10 LPLSRVKRIIKQDEDVHYCSNASALLISVATELFVEKLATEAYQLAKLQKRKGIRYRDVE 69
Query: 175 MAITKYDMFDFLIDI 189
+ K D F+FL D+
Sbjct: 70 DVVRKDDQFEFLSDL 84
>sp|Q9JKP8|CHRC1_MOUSE Chromatin accessibility complex protein 1 OS=Mus musculus GN=Chrac1
PE=1 SV=1
Length = 129
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
D + +LPL+RI+ IMK V I+ EA +L +KA ELF+ L ++ H ++ L
Sbjct: 13 DQRLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGKAKKAL 72
Query: 169 QRNDIAMAITKYDMFDFLIDIVPRE 193
+D+A + FL DI+P++
Sbjct: 73 TYSDLASTAEDSETLQFLADILPKK 97
>sp|Q14919|NC2A_HUMAN Dr1-associated corepressor OS=Homo sapiens GN=DRAP1 PE=1 SV=3
Length = 205
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
P ARIKKIM+ D+ + ++A P++ S+A ELF+ L +A T+ +T+ + +
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71
Query: 175 MAITKYDMFDFLIDIV 190
I FDFL D+V
Sbjct: 72 QCIELEQQFDFLKDLV 87
>sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor OS=Bos taurus GN=DRAP1 PE=2 SV=1
Length = 205
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
P ARIKKIM+ D+ + ++A P++ S+A ELF+ L +A T+ +T+ + +
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71
Query: 175 MAITKYDMFDFLIDIV 190
I FDFL D+V
Sbjct: 72 QCIELEQQFDFLKDLV 87
>sp|A0JPP1|NC2A_RAT Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1
Length = 205
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
P ARIKKIM+ D+ + ++A P++ S+A ELF+ L +A T+ +T+ + +
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71
Query: 175 MAITKYDMFDFLIDIV 190
I FDFL D+V
Sbjct: 72 QCIELEQQFDFLKDLV 87
>sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=2 SV=3
Length = 205
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
P ARIKKIM+ D+ + ++A P++ S+A ELF+ L +A T+ +T+ + +
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71
Query: 175 MAITKYDMFDFLIDIV 190
I FDFL D+V
Sbjct: 72 QCIELEQQFDFLKDLV 87
>sp|Q6C6M5|DPB3_YARLI DNA polymerase epsilon subunit C OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB3 PE=3 SV=1
Length = 114
Score = 52.0 bits (123), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
++KT+ P+ARIKK+M+ DD + ++ P +KA ELF+ L + +
Sbjct: 7 EIKTR-FPVARIKKLMQSDDDIGKVAQATPTAVAKALELFMISLIEETCNQARMRNSKRV 65
Query: 169 QRNDIAMAITKYDMFDFLIDIVPR--EEVKTATG----PHRR 204
+ + A+ + + FDFL DIV + + V ATG P RR
Sbjct: 66 SPSHLKQAVLETEQFDFLQDIVSKHPDAVAPATGEEEQPKRR 107
>sp|Q6BX14|DPB3_DEBHA DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB3 PE=3 SV=1
Length = 277
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 114 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 173
+LPL++IKKI K+D S A A ELFI T ++ + + +KR+ LQ D
Sbjct: 91 SLPLSKIKKIFKMDPDYLAASQSAVYATGLATELFIQYFTEQSLVLAKMDKRKKLQYKDF 150
Query: 174 AMAITKYDMFDFLIDIVPR 192
+ A+ D +FL D VP+
Sbjct: 151 SNAVASQDSLNFLSDTVPK 169
>sp|Q10315|DPB3_SCHPO DNA polymerase epsilon subunit C OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb3 PE=1 SV=1
Length = 199
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
P+ARIKKIM+ D V ++ P++ SKA ELF+ + + T ++ + + + +
Sbjct: 24 FPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSHLK 83
Query: 175 MAITKYDMFDFLIDIVPR 192
A+ + FDFL DIV +
Sbjct: 84 HAVQSVEQFDFLQDIVEK 101
>sp|Q2PP52|RHBL6_TOXGO Rhomboid-like protease 6 OS=Toxoplasma gondii GN=ROM6 PE=2 SV=1
Length = 531
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 26/163 (15%)
Query: 225 STFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPG 284
S+ SH+S H+ N+FV++ DL F + A + L H ++ R+P
Sbjct: 359 SSLSHKSTGHLIFNLFVINQLFRLLSFDLSDRDFASLFGLAALCGGL---GHLLVSRQPV 415
Query: 285 LSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLD----------FL 334
L GAS A+L H IL +P+ +A +Q M L+ FL
Sbjct: 416 L--GASAFAYALLWTEATRHSREMFRILPIPFFPLTALQLVQVAMCLEAAMAFLARPAFL 473
Query: 335 GVLFRWRLFDHA------AHLGGALFGILYSKY-----GEQTW 366
RL A HLGG G LYS Y G+++W
Sbjct: 474 ARFPASRLLRFAQGISWSGHLGGLAAGCLYSWYKRRVEGDRSW 516
>sp|Q6CLM5|DPB3_KLULA DNA polymerase epsilon subunit C OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DPB3 PE=3 SV=1
Length = 166
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIH----ELTIRAWIHTEDNKRRTLQR 170
+P+++ KKI + D + S A + ELFI E A IH + R L
Sbjct: 11 IPISKCKKIARTDPEYILTSQAAFAATAFTTELFIQMLAEETCSLAQIHKQTKTLR-LNY 69
Query: 171 NDIAMAITKYDMFDFLIDIVPREE 194
D++ AI D F FL D+VP+ E
Sbjct: 70 EDLSTAIRNLDKFQFLSDVVPQTE 93
>sp|P40096|NCB1_YEAST Negative cofactor 2 complex subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BUR6 PE=1
SV=1
Length = 142
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 116 PLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAM 175
P A++KKIM+ D+ + +S P++ ++ E FI L ++ + + +
Sbjct: 54 PPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRITAEILKK 113
Query: 176 AITKYDMFDFLIDIVPREEVKT 197
I + FDFL + + EE +T
Sbjct: 114 TILNDEKFDFLREGLCVEEGQT 135
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 111 KTQALPLARIKKIMK--LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
++Q LP A + +I+K L +GV + + E+ + +KAA+++IH LT + + + R T+
Sbjct: 3 ESQDLPGAIVNRIIKASLPEGV-LCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTI 61
Query: 169 QRNDIAMAITKYDMFDF 185
D+ AI + D +F
Sbjct: 62 SPKDVFQAIEEIDFENF 78
>sp|P27344|DPB3_YEAST DNA polymerase epsilon subunit C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB3 PE=1 SV=2
Length = 201
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 111 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTE-DNKRRT-- 167
K P++++KKI K D + S A + AAELF+ L + + + ++K +T
Sbjct: 8 KAPVFPISKVKKIAKCDPEYVITSNVAISATAFAAELFVQNLVEESLVLAQLNSKGKTSL 67
Query: 168 -LQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRR 204
L N I + K D F FL D + + + +A R
Sbjct: 68 RLSLNSIEECVEKRDNFRFLEDAIKQLKKNSALDKKRE 105
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 115 LPLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 173
LP+A + +IMK + G IS +A + FI +T A + KR+T+ +DI
Sbjct: 41 LPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 100
Query: 174 AMAITKYDMFDFL 186
AIT D++
Sbjct: 101 IWAITTLGFEDYV 113
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1
Length = 263
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 227 FSHQSPLHIFANM-FVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGL 285
F H + LH+ N+ F+LH + E G ++F+ Y + +V +LLS +L++ L
Sbjct: 91 FLHATILHLVLNLVFILHISLRLE-ERYGTKKFLVTYFLSAIVGNLLS----MLMQPWAL 145
Query: 286 SIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRW----R 341
S+GAS A ++ E+ ++ + + S E M + L VL + R
Sbjct: 146 SVGASTAGFGIIGGM-----AAEVSVV---WCKLSEELKRIYSMDICILAVLIYFLSFGR 197
Query: 342 LFDHAAHLGGALFGILYSKY 361
D HLGG L G+ Y
Sbjct: 198 TVDTFGHLGGFLAGVALVCY 217
>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1
Length = 641
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 23/143 (16%)
Query: 222 MLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVR 281
+ S + H LHI N+ + D G + + G+ +LLS V
Sbjct: 345 LFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFLRTTLLFFLGGISGNLLSAVADPC-- 402
Query: 282 KPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYV-----RFSAEHAIQGIMLLDFLGV 336
+++G+SG++ A+L +PY I M++ +G+
Sbjct: 403 --SITVGSSGSMYALLG-------------ALIPYCVEYWKSIPRPGCILVFMIVVIIGI 447
Query: 337 LFRWRLF-DHAAHLGGALFGILY 358
L F D+ AH+GGAL GIL+
Sbjct: 448 LTGMAGFTDNYAHMGGALGGILW 470
>sp|Q9P7D8|YOFA_SCHPO Uncharacterized rhomboid protein P4H10.10, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP4H10.10 PE=3 SV=1
Length = 392
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 222 MLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLS 273
+++S FSHQ+ H+ N ++SF+ V G + + YL AGV + ++
Sbjct: 172 LVVSIFSHQNLAHLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGVFGNYVA 223
>sp|D6RRG1|ORF4_BPKPP Structural protein ORF4 OS=Pseudomonas phage KPP10 PE=1 SV=1
Length = 351
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 54 FYPRL--HPVL---YKYFASNPQSMGITLRLHAVSPEFDSRLGRSFFGSVLEVQ 102
F+ +L HP + YKY+AS PQ + LR FD+R +FG+VL ++
Sbjct: 211 FFSKLISHPTVVEAYKYYASQPQILRERLRARG----FDARYREFYFGNVLYIE 260
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,865,142
Number of Sequences: 539616
Number of extensions: 5928514
Number of successful extensions: 15263
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 15197
Number of HSP's gapped (non-prelim): 66
length of query: 386
length of database: 191,569,459
effective HSP length: 119
effective length of query: 267
effective length of database: 127,355,155
effective search space: 34003826385
effective search space used: 34003826385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)