Query psy8269
Match_columns 386
No_of_seqs 294 out of 1297
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:00:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 5.1E-26 1.7E-30 206.1 16.6 171 171-364 4-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 3.2E-26 1.1E-30 210.0 10.2 175 170-364 8-185 (196)
3 4g92_C HAPE; transcription fac 99.7 2.3E-18 7.8E-23 145.9 4.5 102 88-192 17-119 (119)
4 1n1j_B NF-YC; histone-like PAI 99.7 5E-17 1.7E-21 132.9 4.5 95 97-192 3-97 (97)
5 2byk_A Chrac-16; nucleosome sl 99.5 1.3E-15 4.5E-20 132.2 2.7 86 108-193 13-99 (140)
6 1jfi_A Transcription regulator 99.5 6.7E-15 2.3E-19 120.5 4.6 83 111-193 8-90 (98)
7 2byk_B Chrac-14; nucleosome sl 99.1 5.3E-11 1.8E-15 101.7 4.4 78 112-189 7-85 (128)
8 1n1j_A NF-YB; histone-like PAI 99.0 4.1E-10 1.4E-14 91.0 5.2 78 111-191 5-83 (93)
9 1b67_A Protein (histone HMFA); 98.5 8.6E-08 2.9E-12 72.8 5.5 63 114-177 2-64 (68)
10 3b0c_W CENP-W, centromere prot 98.4 5.1E-07 1.7E-11 70.1 6.5 66 113-179 3-69 (76)
11 1jfi_B DR1 protein, transcript 98.1 3.5E-06 1.2E-10 75.5 5.9 80 110-189 11-90 (179)
12 1ku5_A HPHA, archaeal histon; 97.5 0.00018 6E-09 54.7 6.1 64 113-177 5-68 (70)
13 1id3_C Histone H2A.1; nucleoso 97.5 0.00024 8.3E-09 60.6 7.1 75 114-188 25-99 (131)
14 2nqb_C Histone H2A; nucleosome 97.3 0.00044 1.5E-08 58.4 6.8 75 114-188 23-97 (123)
15 1tzy_A Histone H2A-IV; histone 97.3 0.0005 1.7E-08 58.5 7.1 75 114-188 25-99 (129)
16 1f1e_A Histone fold protein; a 97.2 0.00049 1.7E-08 60.2 6.0 68 111-179 79-146 (154)
17 2f8n_K Histone H2A type 1; nuc 97.2 0.00079 2.7E-08 58.5 7.2 75 114-188 44-118 (149)
18 1tzy_D Histone H4-VI; histone- 97.1 0.00074 2.5E-08 55.2 6.2 69 110-179 25-93 (103)
19 1id3_B Histone H4; nucleosome 97.1 0.00078 2.7E-08 55.0 6.3 70 109-179 23-92 (102)
20 2f8n_G Core histone macro-H2A. 97.1 0.0008 2.7E-08 56.5 6.3 75 114-188 22-96 (120)
21 2yfw_B Histone H4, H4; cell cy 97.1 0.00081 2.8E-08 55.0 6.2 70 110-180 25-94 (103)
22 2hue_C Histone H4; mini beta s 97.1 0.0011 3.7E-08 52.2 6.4 68 111-179 7-74 (84)
23 1f66_C Histone H2A.Z; nucleoso 97.0 0.0016 5.4E-08 55.3 7.1 75 114-188 27-102 (128)
24 3b0c_T CENP-T, centromere prot 96.9 0.001 3.5E-08 55.1 4.9 82 111-193 4-92 (111)
25 1f1e_A Histone fold protein; a 96.6 0.0037 1.3E-07 54.6 6.6 67 114-180 4-70 (154)
26 2jss_A Chimera of histone H2B. 96.2 0.01 3.4E-07 53.7 7.5 75 114-188 105-180 (192)
27 1taf_B TFIID TBP associated fa 90.7 0.67 2.3E-05 35.0 6.4 64 113-177 5-68 (70)
28 2ly8_A Budding yeast chaperone 86.3 1.4 4.6E-05 36.8 6.0 74 106-179 38-111 (121)
29 3b0b_C CENP-X, centromere prot 82.1 3.1 0.00011 32.2 6.0 66 111-176 5-72 (81)
30 4dra_E Centromere protein X; D 79.6 6 0.00021 30.8 6.9 66 112-177 10-77 (84)
31 2hue_B Histone H3; mini beta s 74.9 5.2 0.00018 30.6 5.3 63 115-177 7-70 (77)
32 2yfv_A Histone H3-like centrom 71.8 5.4 0.00018 32.0 4.9 79 99-177 15-97 (100)
33 1tzy_C Histone H3; histone-fol 71.7 5.6 0.00019 33.7 5.2 80 98-177 49-129 (136)
34 1taf_A TFIID TBP associated fa 70.7 10 0.00036 28.2 6.0 60 119-179 6-65 (68)
35 1ckt_A High mobility group 1 p 68.1 1.6 5.4E-05 32.0 0.9 41 18-65 31-71 (71)
36 2l5a_A Histone H3-like centrom 67.5 6.6 0.00023 36.2 5.2 51 129-179 175-225 (235)
37 1k99_A Upstream binding factor 66.0 2.4 8.3E-05 33.5 1.7 49 17-72 37-85 (99)
38 1bh9_B TAFII28; histone fold, 63.2 18 0.00061 28.3 6.2 74 105-179 7-81 (89)
39 3r45_A Histone H3-like centrom 58.1 12 0.0004 32.4 4.7 80 98-177 64-146 (156)
40 3v9r_B MHF2, uncharacterized p 57.6 14 0.00047 28.9 4.6 45 115-159 2-48 (88)
41 1hme_A High mobility group pro 57.3 2.3 7.7E-05 31.7 0.1 42 17-65 33-74 (77)
42 2cs1_A PMS1 protein homolog 1; 56.8 2.7 9.4E-05 32.6 0.5 49 17-72 34-82 (92)
43 3nqu_A Histone H3-like centrom 56.1 16 0.00053 31.1 5.1 80 98-177 48-130 (140)
44 1h3o_B Transcription initiatio 55.7 27 0.00091 26.5 5.9 67 112-178 3-69 (76)
45 3nqj_A Histone H3-like centrom 54.5 16 0.00054 28.2 4.5 46 132-177 27-72 (82)
46 2crj_A SWI/SNF-related matrix- 54.3 3.2 0.00011 32.2 0.5 44 17-67 34-77 (92)
47 4dra_A Centromere protein S; D 52.7 11 0.00036 31.0 3.4 47 133-179 48-94 (113)
48 3fgh_A Transcription factor A, 51.4 2 7E-05 31.2 -1.1 40 19-65 27-66 (67)
49 2lhj_A High mobility group pro 50.9 4.4 0.00015 31.7 0.8 41 18-65 52-92 (97)
50 2eqz_A High mobility group pro 50.4 2.2 7.7E-05 32.6 -1.0 41 18-65 45-85 (86)
51 1aab_A High mobility group pro 47.8 2.5 8.5E-05 32.0 -1.1 42 19-67 38-79 (83)
52 1v63_A Nucleolar transcription 45.8 3.6 0.00012 32.7 -0.5 49 17-72 33-81 (101)
53 2co9_A Thymus high mobility gr 44.5 3.5 0.00012 32.7 -0.7 45 17-68 44-88 (102)
54 1i11_A Transcription factor SO 42.8 4.1 0.00014 30.6 -0.6 24 17-40 31-54 (81)
55 1j46_A SRY, sex-determining re 42.2 2.9 9.8E-05 32.0 -1.6 44 17-67 31-74 (85)
56 1gt0_D Transcription factor SO 41.6 2.9 0.0001 31.4 -1.6 44 17-67 29-72 (80)
57 1l8y_A Upstream binding factor 40.7 5.3 0.00018 31.5 -0.2 44 17-67 30-73 (91)
58 2lef_A LEF-1 HMG, protein (lym 40.5 3.2 0.00011 31.7 -1.5 44 17-67 29-72 (86)
59 1hry_A Human SRY; DNA, DNA-bin 40.2 2.6 8.8E-05 31.3 -2.1 42 17-65 31-72 (76)
60 2jss_A Chimera of histone H2B. 39.2 49 0.0017 29.2 5.9 61 118-179 7-68 (192)
61 4a3n_A Transcription factor SO 38.5 2.5 8.5E-05 30.8 -2.4 24 17-40 29-52 (71)
62 1v64_A Nucleolar transcription 37.8 4.7 0.00016 32.5 -1.0 47 17-70 40-86 (108)
63 1wz6_A HMG-box transcription f 37.2 2.6 9E-05 31.8 -2.5 42 17-65 34-75 (82)
64 3f27_D Transcription factor SO 36.5 3.5 0.00012 31.1 -1.9 42 17-65 33-74 (83)
65 3u2b_C Transcription factor SO 36.0 3.3 0.00011 30.9 -2.1 43 17-66 29-71 (79)
66 4euw_A Transcription factor SO 34.1 4.6 0.00016 32.3 -1.6 43 17-66 56-98 (106)
67 2e6o_A HMG box-containing prot 33.7 3.7 0.00013 31.5 -2.2 24 17-40 44-67 (87)
68 3v9r_A MHF1, uncharacterized p 32.5 43 0.0015 26.1 3.9 47 133-179 33-79 (90)
69 3nm9_A HMG-D, high mobility gr 32.0 14 0.00048 27.0 0.9 40 17-65 30-69 (73)
70 2yrq_A High mobility group pro 31.6 11 0.00036 32.6 0.2 42 17-65 128-169 (173)
71 2gzk_A Sex-determining region 31.2 7.1 0.00024 33.1 -1.0 43 16-65 114-156 (159)
72 1wxl_A Single-strand recogniti 30.5 12 0.0004 27.5 0.2 41 17-66 30-70 (73)
73 1wgf_A Upstream binding factor 29.4 8.7 0.0003 29.6 -0.7 40 16-62 46-85 (90)
74 1cg7_A Protein (NON histone pr 28.3 3.9 0.00013 31.8 -2.9 43 17-66 47-89 (93)
75 3b0b_B CENP-S, centromere prot 27.5 56 0.0019 26.3 3.8 48 132-179 39-86 (107)
76 2nqb_D Histone H2B; nucleosome 26.2 1.1E+02 0.0037 25.3 5.4 65 114-179 33-98 (123)
77 3vh5_A CENP-S; histone fold, c 26.1 71 0.0024 27.0 4.3 47 133-179 40-86 (140)
78 1tzy_B Histone H2B; histone-fo 24.7 1.2E+02 0.004 25.2 5.4 65 114-179 36-101 (126)
79 2l5a_A Histone H3-like centrom 24.7 1.3E+02 0.0046 27.5 6.2 63 114-176 14-80 (235)
80 3tmm_A Transcription factor A, 23.0 25 0.00087 32.0 1.1 48 18-72 170-217 (238)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.94 E-value=5.1e-26 Score=206.10 Aligned_cols=171 Identities=11% Similarity=0.093 Sum_probs=129.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCC---CCccccceeecccccCChhHHHHHHHHHHHHHH
Q psy8269 171 NDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNP---DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMP 247 (386)
Q Consensus 171 ~DIa~aI~~i~i~~FL~~ivp~~~~~~~~~p~~~~~~~~~~l~p---~~g~~wrllTs~FlH~~~~HLl~Nm~~L~~fG~ 247 (386)
.+++.+++.+|+.+|+.+.+...+.. .....++| .++|+||++|++|+|.|+.|+++||+.++.+|.
T Consensus 4 ~pvt~~li~~~v~vf~~~~~~~~~~~----------~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~ 73 (181)
T 2xov_A 4 GPVTWVMMIACVVVFIAMQILGDQEV----------MLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGG 73 (181)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHH----------HHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhCcHHH----------HHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45788999999999999876543100 01122333 367999999999999999999999999999999
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcceechHHHHHHHHHHHHH---HcCCCcceeEechhhhHHHHHH
Q psy8269 248 SSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCI---THPDTELGILFVPYVRFSAEHA 324 (386)
Q Consensus 248 ~lE~~~G~~rfl~lyl~sgv~gsl~s~l~~~~~~~~~~~vGASGaI~Gll~a~~~---~~p~~~~~l~fip~~~~~a~~~ 324 (386)
.+|+.+|+.||+.+|+.++++++++++++. + ..++||||+++|+++++++ ..|+.+.. +| .+....
T Consensus 74 ~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~---~--~~~vGaSGai~gl~g~~~~~~~~~p~~~~~---l~---~~~~~~ 142 (181)
T 2xov_A 74 AVEKRLGSGKLIVITLISALLSGYVQQKFS---G--PWFGGLSGVVYALMGYVWLRGERDPQSGIY---LQ---RGLIIF 142 (181)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---C--SCCCCSHHHHHHHHHHHHHHHHHCGGGSCC---CC---HHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhc---C--CCceeHHHHHHHHHHHHHHHHhhCcCceee---eH---HHHHHH
Confidence 999999999999999999999999998876 2 2389999999999998764 55655432 22 122222
Q ss_pred HHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhh
Q psy8269 325 IQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQ 364 (386)
Q Consensus 325 ~~~~l~~~~~~~~~~~~~i~~~aHLgG~L~G~l~~~~~~~ 364 (386)
....++..+... ..+++|+.||+||+++|+++++..+|
T Consensus 143 ~~~~~~~~~~~~--~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 143 ALIWIVAGWFDL--FGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp HHHHHHHHHTTS--SCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHHHHHhc
Confidence 222333333221 13689999999999999999988654
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.93 E-value=3.2e-26 Score=209.98 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=126.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCC---CCccccceeecccccCChhHHHHHHHHHHHHH
Q psy8269 170 RNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNP---DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFM 246 (386)
Q Consensus 170 ~~DIa~aI~~i~i~~FL~~ivp~~~~~~~~~p~~~~~~~~~~l~p---~~g~~wrllTs~FlH~~~~HLl~Nm~~L~~fG 246 (386)
+.+++.+++.+|+.+|+.+.+.+.+.. .....+.| .++|+||++|++|+|.|+.|+++||+.++.+|
T Consensus 8 ~~pvt~~li~~~v~vfll~~~~~~~~~----------~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G 77 (196)
T 2nr9_A 8 QGKITLILTALCVLIYIAQQLGFEDDI----------MYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFG 77 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHHH----------HHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCcHHH----------HHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 456888999999999999876542100 01122333 36799999999999999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcceechHHHHHHHHHHHHHHcCCCcceeEechhhhHHHHHHHH
Q psy8269 247 PSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQ 326 (386)
Q Consensus 247 ~~lE~~~G~~rfl~lyl~sgv~gsl~s~l~~~~~~~~~~~vGASGaI~Gll~a~~~~~p~~~~~l~fip~~~~~a~~~~~ 326 (386)
..+|+.+|+.+|+.+|++++++|+++++++. + + .++||||+|||++++.++........ ..+|. ....+..
T Consensus 78 ~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~---~-~-~~vGaSGai~gl~g~~~~~~~~~~~~-~~~~~---~~~~~~~ 148 (196)
T 2nr9_A 78 GMIERTFGSVKLLMLYVVASAITGYVQNYVS---G-P-AFFGLSGVVYAVLGYVFIRDKLNHHL-FDLPE---GFFTMLL 148 (196)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---C-S-CCCCSHHHHHHHHHHHHHHHHSSTTS-CCCCC---SSTTTTT
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHHHhc---C-C-CeeeHHHHHHHHHHHHHHHHHhcchh-hcchH---HHHHHHH
Confidence 9999999999999999999999999998876 2 2 38999999999999876532111111 11221 1111111
Q ss_pred HHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhh
Q psy8269 327 GIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQ 364 (386)
Q Consensus 327 ~~l~~~~~~~~~~~~~i~~~aHLgG~L~G~l~~~~~~~ 364 (386)
..+.+++.... ..+++|+.||+||+++|+++++.+.+
T Consensus 149 ~~~~~~~~~~~-~~~~v~~~aHlgG~l~G~l~~~~~~~ 185 (196)
T 2nr9_A 149 VGIALGFISPL-FGVEMGNAAHISGLIVGLIWGFIDSK 185 (196)
T ss_dssp TTTTHHHHSCS-SCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 11223332211 23589999999999999999987654
No 3
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.72 E-value=2.3e-18 Score=145.90 Aligned_cols=102 Identities=62% Similarity=0.962 Sum_probs=91.8
Q ss_pred ccccccchh-hhhHHhhhhhhhhhhcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhcccc
Q psy8269 88 SRLGRSFFG-SVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRR 166 (386)
Q Consensus 88 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~ 166 (386)
+.+ +.||+ +++|+++ .+.|+|.+.+|++|||||||.++++.+|++||+.++++|||.|+++++.+||.++..++|+
T Consensus 17 ~~l-~~fw~~~~~~~e~--~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krk 93 (119)
T 4g92_C 17 DIL-TTYWQHVINHLES--DNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRR 93 (119)
T ss_dssp HHH-HHHHHHHHHHHTC--SCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHH-HHHHHHHHHHHHh--cccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 444 34565 6666642 3568999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhccc
Q psy8269 167 TLQRNDIAMAITKYDMFDFLIDIVPR 192 (386)
Q Consensus 167 ~iq~~DIa~aI~~i~i~~FL~~ivp~ 192 (386)
+|++.||..+|...+.++||.|+||+
T Consensus 94 tI~~~di~~Av~~~e~~dFL~DiVPk 119 (119)
T 4g92_C 94 TLQRSDIAAALSKSDMFDFLIDIVPR 119 (119)
T ss_dssp EECHHHHHHHHTTCGGGGGGTTTCC-
T ss_pred ccCHHHHHHHHhcCchhhHHHHhCCC
Confidence 99999999999999999999999985
No 4
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.65 E-value=5e-17 Score=132.93 Aligned_cols=95 Identities=76% Similarity=1.146 Sum_probs=76.8
Q ss_pred hhhHHhhhhhhhhhhcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHH
Q psy8269 97 SVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMA 176 (386)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~a 176 (386)
+++|++. ....|++...+|++|||||||.++++.+|++|++.++++|+|.|+++++.++|.+++.++|++++..||..+
T Consensus 3 ~~~~~~~-~~~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 3 HMEEIRN-LTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp ------------------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHh-cccCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 3445543 246788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccc
Q psy8269 177 ITKYDMFDFLIDIVPR 192 (386)
Q Consensus 177 I~~i~i~~FL~~ivp~ 192 (386)
|...+.++||.|++|+
T Consensus 82 v~~~e~~~FL~divP~ 97 (97)
T 1n1j_B 82 ITKFDQFDFLIDIVPR 97 (97)
T ss_dssp HTTCGGGGGGTTTSCC
T ss_pred HhcCcHHHHHHhhCCC
Confidence 9999999999999984
No 5
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.54 E-value=1.3e-15 Score=132.15 Aligned_cols=86 Identities=27% Similarity=0.472 Sum_probs=68.6
Q ss_pred hhhhcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhh-hhccccccchhhHHHHHHHHHHHHHH
Q psy8269 108 LDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHT-EDNKRRTLQRNDIAMAITKYDMFDFL 186 (386)
Q Consensus 108 ~~~~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~-~~~kr~~iq~~DIa~aI~~i~i~~FL 186 (386)
...+...+|++|||||||.++++.+|++||+.++++|||+|+++++.+||.++ .+++|++|+..||..+|...+.++||
T Consensus 13 ~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL 92 (140)
T 2byk_A 13 PPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFL 92 (140)
T ss_dssp ----------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGG
T ss_pred CcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhH
Confidence 34556679999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred Hhhcccc
Q psy8269 187 IDIVPRE 193 (386)
Q Consensus 187 ~~ivp~~ 193 (386)
.+++|..
T Consensus 93 ~divP~k 99 (140)
T 2byk_A 93 LQIVPQK 99 (140)
T ss_dssp TTTSCSC
T ss_pred hccccch
Confidence 9999974
No 6
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.51 E-value=6.7e-15 Score=120.50 Aligned_cols=83 Identities=27% Similarity=0.329 Sum_probs=61.9
Q ss_pred hcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHhhc
Q psy8269 111 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIV 190 (386)
Q Consensus 111 ~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~iv 190 (386)
....+|++|||||||.++++.+|++|++.+++++||.|+++++.++|.++..++|+++++.||..+|...+.++||.|++
T Consensus 8 ~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~div 87 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKARK 87 (98)
T ss_dssp --CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC------------
T ss_pred cCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhcC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy8269 191 PRE 193 (386)
Q Consensus 191 p~~ 193 (386)
|..
T Consensus 88 p~k 90 (98)
T 1jfi_A 88 EAE 90 (98)
T ss_dssp ---
T ss_pred chH
Confidence 973
No 7
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.08 E-value=5.3e-11 Score=101.75 Aligned_cols=78 Identities=23% Similarity=0.286 Sum_probs=70.8
Q ss_pred cccCchHHHHHhhh-cCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHhh
Q psy8269 112 TQALPLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 189 (386)
Q Consensus 112 ~~~~p~~rik~im~-~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~i 189 (386)
...+|+++|+|||| .+|+..+|++|++.++.++|+.||++++..+|..+...+|+||+..||..++..++.++|+..+
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~l 85 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSL 85 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHH
Confidence 45799999999999 6899999999999999999999999999999999999999999999999999999988888755
No 8
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.97 E-value=4.1e-10 Score=91.03 Aligned_cols=78 Identities=26% Similarity=0.340 Sum_probs=68.6
Q ss_pred hcccCchHHHHHhhhcC-ccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHhh
Q psy8269 111 KTQALPLARIKKIMKLD-DGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 189 (386)
Q Consensus 111 ~~~~~p~~rik~im~~~-~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~i 189 (386)
....+|.++|+||||.+ |+..+|++||..++.++||.|+++++..++.++...+|+|++..||..++. .+.|+.++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~~i 81 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDSYV 81 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGGGH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH---HcCcHhhH
Confidence 34579999999999999 899999999999999999999999999999999999999999999999996 34454444
Q ss_pred cc
Q psy8269 190 VP 191 (386)
Q Consensus 190 vp 191 (386)
.|
T Consensus 82 ~~ 83 (93)
T 1n1j_A 82 EP 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.54 E-value=8.6e-08 Score=72.76 Aligned_cols=63 Identities=29% Similarity=0.405 Sum_probs=60.2
Q ss_pred cCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHH
Q psy8269 114 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAI 177 (386)
Q Consensus 114 ~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI 177 (386)
++|.++|+|+||.. +...+++|+..++.+++|.|+.+++..++.|+...+|+|++..||..++
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~ 64 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELAR 64 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 58999999999999 7789999999999999999999999999999999999999999998876
No 10
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.39 E-value=5.1e-07 Score=70.13 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=60.2
Q ss_pred ccCchHHHHHhhh-cCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 113 QALPLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 113 ~~~p~~rik~im~-~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
..+|.++|+|||| ..|+ ..|++|+..++.++|+.|+++++..|...+...+|+|++..||..++-.
T Consensus 3 ~~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp -CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5799999999999 6676 4689999999999999999999999999999999999999999888744
No 11
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.09 E-value=3.5e-06 Score=75.51 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=70.1
Q ss_pred hhcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHhh
Q psy8269 110 LKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDI 189 (386)
Q Consensus 110 ~~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~i 189 (386)
..+..+|.++|+||||..-...+|++|+..++.++|+.||+++|..+...+...+|+||...||..++..+...+|+-.+
T Consensus 11 ~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~~l 90 (179)
T 1jfi_B 11 DDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEV 90 (179)
T ss_dssp -CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHHHH
T ss_pred hhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHHHH
Confidence 34567999999999999833568999999999999999999999999999999999999999999999887766666533
No 12
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=97.49 E-value=0.00018 Score=54.67 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=60.1
Q ss_pred ccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHH
Q psy8269 113 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAI 177 (386)
Q Consensus 113 ~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI 177 (386)
..+|.+.|+++++.. |+..+++|+......+++.|+.+++..+..|++-.+|++++..||..++
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~ 68 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 68 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 368999999999975 7899999999999999999999999999999999999999999998775
No 13
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.46 E-value=0.00024 Score=60.60 Aligned_cols=75 Identities=20% Similarity=0.361 Sum_probs=71.5
Q ss_pred cCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHh
Q psy8269 114 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 188 (386)
Q Consensus 114 ~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~ 188 (386)
..|++||+++||.+.....|+.+|++.++..+|-+..++...++..+...+++.|++.||..+|-..+-+++|..
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~ 99 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLG 99 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTT
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhc
Confidence 489999999999999999999999999999999999999999999999999999999999999998888888884
No 14
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.30 E-value=0.00044 Score=58.39 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=71.1
Q ss_pred cCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHh
Q psy8269 114 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 188 (386)
Q Consensus 114 ~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~ 188 (386)
..|++||+++||.+.....|+.+|++..+..+|-+..++...++..+...+++.+++.||..+|-..+-+++|..
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~ 97 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 97 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhc
Confidence 489999999999998889999999999999999999999999999999999999999999999998888888874
No 15
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.29 E-value=0.0005 Score=58.48 Aligned_cols=75 Identities=19% Similarity=0.349 Sum_probs=71.2
Q ss_pred cCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHh
Q psy8269 114 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 188 (386)
Q Consensus 114 ~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~ 188 (386)
..|++||+++|+.+.....|+.+|++..+..+|-+..++...++..+...++..+++.||..+|-..+-+++|..
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~ 99 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 99 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhC
Confidence 489999999999999889999999999999999999999999999999999999999999999998888888874
No 16
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.19 E-value=0.00049 Score=60.24 Aligned_cols=68 Identities=26% Similarity=0.329 Sum_probs=63.4
Q ss_pred hcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 111 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 111 ~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
....+|.+.|+||||.+ +..-||.|+.......+|-|+.+++..+-.+++..+|+|++..||..++-.
T Consensus 79 ~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 79 DGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 34469999999999999 888999999999999999999999999999999999999999999988754
No 17
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.18 E-value=0.00079 Score=58.52 Aligned_cols=75 Identities=19% Similarity=0.344 Sum_probs=71.0
Q ss_pred cCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHh
Q psy8269 114 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 188 (386)
Q Consensus 114 ~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~ 188 (386)
..|++||+++||.+.....|+.+|++..+..+|-+..|+...++..+...+++.|++.||..+|-..+-++.|..
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~ 118 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 118 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTT
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhc
Confidence 389999999999999889999999999999999999999999999999999999999999999988888888874
No 18
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.13 E-value=0.00074 Score=55.19 Aligned_cols=69 Identities=23% Similarity=0.280 Sum_probs=63.2
Q ss_pred hhcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 110 LKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 110 ~~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
...+.+|.+.|+++++.. ++.-|+.|+.......+|-|+++++..+-.+++..+|++++..||..++-.
T Consensus 25 ~~~~gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~ 93 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_dssp CGGGGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hhcccCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 344459999999999987 678999999999999999999999999999999999999999999998865
No 19
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.12 E-value=0.00078 Score=54.99 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=63.7
Q ss_pred hhhcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 109 ~~~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
....+.+|.+.|+++++.. ++.-|+.|+-......++.|+++++..+-.+++..+|++++..||..++-.
T Consensus 23 r~~i~~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr 92 (102)
T 1id3_B 23 RDNIQGITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 92 (102)
T ss_dssp -CCGGGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 3445569999999999986 889999999999999999999999999999999999999999999988865
No 20
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.10 E-value=0.0008 Score=56.54 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=70.5
Q ss_pred cCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHh
Q psy8269 114 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 188 (386)
Q Consensus 114 ~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~ 188 (386)
..|++||+++||.+.....++.+|++..+..+|-+..++...+...+...+++.|++.||..+|...+-+++|..
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~ 96 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLK 96 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhC
Confidence 389999999999988778999999999999999999999999999999999999999999999998888888874
No 21
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.10 E-value=0.00081 Score=54.95 Aligned_cols=70 Identities=23% Similarity=0.268 Sum_probs=61.5
Q ss_pred hhcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHH
Q psy8269 110 LKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 180 (386)
Q Consensus 110 ~~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i 180 (386)
...+.+|.+.|+++++.. ++.-|+.|+.......+|-|+++++..+-.+++..+|++++..||..++-..
T Consensus 25 ~~~~gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp -----CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 334459999999999987 6788999999999999999999999999999999999999999999998654
No 22
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.06 E-value=0.0011 Score=52.15 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=62.5
Q ss_pred hcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 111 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 111 ~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
+.+.+|.+.||++++.. |+.-|+.|+-......++.|+++++..+-.+++-.+|++++..||..++-.
T Consensus 7 ~~~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~ 74 (84)
T 2hue_C 7 NIQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp GCCSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 34569999999999987 889999999999999999999999999999999999999999999887643
No 23
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=96.98 E-value=0.0016 Score=55.31 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=69.7
Q ss_pred cCchHHHHHhhhcCccc-cccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHh
Q psy8269 114 ALPLARIKKIMKLDDGV-KMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 188 (386)
Q Consensus 114 ~~p~~rik~im~~~~~v-~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~ 188 (386)
..|++||+++||.+... ..|+.+|++..+..+|-+..++...++..+...++..|++.||..+|-..+-+++|..
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~ 102 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 102 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc
Confidence 38999999999999865 4899999999999999999999999999999999999999999999988888888875
No 24
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=96.87 E-value=0.001 Score=55.14 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=66.1
Q ss_pred hcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH-------HHHH
Q psy8269 111 KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK-------YDMF 183 (386)
Q Consensus 111 ~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~-------i~i~ 183 (386)
++..+|.+.|+|||+-. ++..||.|+.......++.|++.++..+-.+++-.+|+||+..||..++-. ....
T Consensus 4 ~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l~ 82 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLH 82 (111)
T ss_dssp ------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCHH
T ss_pred CCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccHH
Confidence 34679999999999988 889999999999999999999999999999999999999999999998854 3334
Q ss_pred HHHHhhcccc
Q psy8269 184 DFLIDIVPRE 193 (386)
Q Consensus 184 ~FL~~ivp~~ 193 (386)
..+...+|.+
T Consensus 83 ~l~~~~lp~E 92 (111)
T 3b0c_T 83 VLVERHLPLE 92 (111)
T ss_dssp HHHHHHSCHH
T ss_pred HHHHHhCcHH
Confidence 4555555554
No 25
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.59 E-value=0.0037 Score=54.61 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=62.0
Q ss_pred cCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHH
Q psy8269 114 ALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKY 180 (386)
Q Consensus 114 ~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i 180 (386)
++|.+.|++|||.+=+..-||.|+...+..+++.|+.+++..+-.+++..+|+|++..||..++...
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l 70 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVL 70 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 6899999999999944488999999999999999999999999999999999999999998888553
No 26
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.22 E-value=0.01 Score=53.70 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=68.7
Q ss_pred cCchHHHHHhhhcCccc-cccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHHHHHHHHHHh
Q psy8269 114 ALPLARIKKIMKLDDGV-KMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLID 188 (386)
Q Consensus 114 ~~p~~rik~im~~~~~v-~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~i~i~~FL~~ 188 (386)
..|++||+++||.+.+. ..++.+|+...+..+|-+..++...+...+...+++.+++.|+..+|...+-++.|..
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 48999999999999776 4899999999999999999999999999999999999999999999988777776664
No 27
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=90.69 E-value=0.67 Score=34.97 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=58.1
Q ss_pred ccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHH
Q psy8269 113 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAI 177 (386)
Q Consensus 113 ~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI 177 (386)
..+|..-||.|-+.. |+.-++.|+-......+|-.+.++...+-.+..-.+|++++..||..++
T Consensus 5 s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Al 68 (70)
T 1taf_B 5 SSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 68 (70)
T ss_dssp CCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHH
Confidence 358999999988773 5678999999999999999999999999999999999999999998875
No 28
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=86.30 E-value=1.4 Score=36.81 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=60.3
Q ss_pred hhhhhhcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 106 SMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 106 ~~~~~~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
+.++.-.+-...+.+=-|...-.|++-||.|+-.-.....+.|.+.+...+-.+++-.+|+|++..||..++-.
T Consensus 38 AsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 38 ASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 33444444444455555555778999999999999999999999999999999999999999999999888744
No 29
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=82.06 E-value=3.1 Score=32.18 Aligned_cols=66 Identities=12% Similarity=0.294 Sum_probs=53.7
Q ss_pred hcccCchHHHHHhhhcCc--cccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHH
Q psy8269 111 KTQALPLARIKKIMKLDD--GVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMA 176 (386)
Q Consensus 111 ~~~~~p~~rik~im~~~~--~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~a 176 (386)
....+|..-|.+|++..= +...|++||..+..+..+.|+.|-..|+-..++......+.-.|+...
T Consensus 5 ~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 5 REGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp --CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 366789999999998732 466999999999999999999999999988877777777777776553
No 30
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=79.61 E-value=6 Score=30.77 Aligned_cols=66 Identities=11% Similarity=0.222 Sum_probs=53.7
Q ss_pred cccCchHHHHHhhhcCc--cccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHH
Q psy8269 112 TQALPLARIKKIMKLDD--GVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAI 177 (386)
Q Consensus 112 ~~~~p~~rik~im~~~~--~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI 177 (386)
...+|..-|.||++..= +...|+.|+..+..+..+.|++|-..|+-..++......+.-.|+-...
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 45689999999999533 4569999999999999999999999999888887777777777765533
No 31
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=74.90 E-value=5.2 Score=30.57 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=51.0
Q ss_pred CchHH-HHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHH
Q psy8269 115 LPLAR-IKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAI 177 (386)
Q Consensus 115 ~p~~r-ik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI 177 (386)
+|..| +|+|.+.-.+---++.+|......|.|.|.-.+...+..|+--.||.|++..|+..+.
T Consensus 7 ~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ 70 (77)
T 2hue_B 7 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLAR 70 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred chHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHH
Confidence 45545 4666554333245689999999999999999999999999999999999999998765
No 32
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=71.79 E-value=5.4 Score=32.04 Aligned_cols=79 Identities=23% Similarity=0.248 Sum_probs=53.7
Q ss_pred hHHhhhhhhhhhhcccCchHH-HHHhhhcCcc---ccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHH
Q psy8269 99 LEVQGALSMLDLKTQALPLAR-IKKIMKLDDG---VKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174 (386)
Q Consensus 99 ~~~~~~~~~~~~~~~~~p~~r-ik~im~~~~~---v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa 174 (386)
+|+..-++..|.--+.+|-.| +|+|.+.-.. ---++.+|......|.|.|.-.+...+..|+--.+|-|++..|+.
T Consensus 15 rEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiq 94 (100)
T 2yfv_A 15 AEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQ 94 (100)
T ss_dssp -------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHH
Confidence 344333455666666778877 4667654332 235689999999999999999999999999999999999999997
Q ss_pred HHH
Q psy8269 175 MAI 177 (386)
Q Consensus 175 ~aI 177 (386)
.+.
T Consensus 95 La~ 97 (100)
T 2yfv_A 95 LAR 97 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 33
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=71.67 E-value=5.6 Score=33.74 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=63.1
Q ss_pred hhHHhhhhhhhhhhcccCchHH-HHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHH
Q psy8269 98 VLEVQGALSMLDLKTQALPLAR-IKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMA 176 (386)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~p~~r-ik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~a 176 (386)
.+|+..-++..|.--+.+|..| +|+|.+.-.+---++.+|......|.|.|.-.+...+..|+--.+|-+++..||..+
T Consensus 49 lrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa 128 (136)
T 1tzy_C 49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 (136)
T ss_dssp HHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHhhcchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHH
Confidence 3455444466666777788888 477765433323668999999999999999999999999999999999999999877
Q ss_pred H
Q psy8269 177 I 177 (386)
Q Consensus 177 I 177 (386)
.
T Consensus 129 ~ 129 (136)
T 1tzy_C 129 R 129 (136)
T ss_dssp H
T ss_pred H
Confidence 5
No 34
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=70.75 E-value=10 Score=28.16 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=52.6
Q ss_pred HHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 119 RIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 119 rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
.|.+|+|. .|+.-.+++++.-.....+.|..++...+-.+..--+|++++..||..+|-.
T Consensus 6 ~i~~iLk~-~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKE-LNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHH-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHH-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 35566665 6778889999999999999999999999999999999999999999998843
No 35
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=68.08 E-value=1.6 Score=32.03 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 18 IPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
..++-|.+.+.|+.|++.+|..+ ..-|..+.-++...|..|
T Consensus 31 ~~eisk~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 31 FSEFSKKCSERWKTMSAKEKGKF-------EDMAKADKARYEREMKTY 71 (71)
T ss_dssp HHHHHHHHHHHHHTCCTTTSHHH-------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhCCHHHHHHH-------HHHHHHHHHHHHHHHHhC
Confidence 38899999999999999999888 666666666666666543
No 36
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=67.49 E-value=6.6 Score=36.19 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=48.5
Q ss_pred cccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 129 GVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 129 ~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
||+-||.|+-.-.....+.|.+.+...+-.+++-.+|+|++..||..++-.
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999988854
No 37
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=66.03 E-value=2.4 Score=33.55 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=43.3
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhccCCCC
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQS 72 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (386)
...++-+.|.+.|++|++++|..+ ..-|..+.-++...|-.|-..+|.-
T Consensus 37 ~~~eisk~lg~~Wk~ls~eeK~~Y-------~~~A~~~k~~Y~~e~~~y~~~~P~~ 85 (99)
T 1k99_A 37 SNLDLTKILSKKYKELPEKKKMKY-------IQDFQREKQEFERNLARFREDHPDL 85 (99)
T ss_dssp CSHHHHHHHHHHHHHSCSTTHHHH-------HHHHHHHHHHHHHHHGGGGGCCCCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 467899999999999999999999 8888888999999999998877754
No 38
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=63.25 E-value=18 Score=28.31 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=57.4
Q ss_pred hhhhhhhcccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhcccc-ccchhhHHHHHHH
Q psy8269 105 LSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRR-TLQRNDIAMAITK 179 (386)
Q Consensus 105 ~~~~~~~~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~-~iq~~DIa~aI~~ 179 (386)
..=+++....+|-+.+||+|+.--+- .+++++.++.+--.-.|+-+++..|-.-.++.+.+ .+++.+|..|.-.
T Consensus 7 ~Rye~~Rrs~f~k~~vKrl~~~~~~~-~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 7 NRYEMYRRSAFPKAAIKRLIQSITGT-SVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 34567788899999999999765443 56778888888888899999999988777666544 7888888877643
No 39
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=58.13 E-value=12 Score=32.44 Aligned_cols=80 Identities=28% Similarity=0.327 Sum_probs=56.7
Q ss_pred hhHHhhhhhhhhhhcccCchHHH-HHhhhcCc-ccc-ccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHH
Q psy8269 98 VLEVQGALSMLDLKTQALPLARI-KKIMKLDD-GVK-MISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174 (386)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~p~~ri-k~im~~~~-~v~-mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa 174 (386)
.+|+..-++..|.--..+|..|+ |+|.+.-. +.. -++.+|......|.|.|.-.+..-+..|+.-.+|-||+..||.
T Consensus 64 LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIq 143 (156)
T 3r45_A 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 143 (156)
T ss_dssp -----------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 55665445666676777888885 66664322 223 5689999999999999999999999999999999999999998
Q ss_pred HHH
Q psy8269 175 MAI 177 (386)
Q Consensus 175 ~aI 177 (386)
.+.
T Consensus 144 LAr 146 (156)
T 3r45_A 144 LAR 146 (156)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 40
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=57.60 E-value=14 Score=28.89 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=36.1
Q ss_pred CchHHHHHhhhcCc--cccccccchhhHHHHHHHHHHHHHhHHhhHh
Q psy8269 115 LPLARIKKIMKLDD--GVKMISAEAPMLFSKAAELFIHELTIRAWIH 159 (386)
Q Consensus 115 ~p~~rik~im~~~~--~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~ 159 (386)
+|..-|-||+...- ....|+.|+..++.+..+.|++|-..||...
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ 48 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQS 48 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777432 4448999999999999999999999999643
No 41
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=57.31 E-value=2.3 Score=31.71 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=34.1
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
..+++-+.+.+.|+.|++++|..+ ..-|..+.-++...|.+|
T Consensus 33 ~~~eisk~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~y~~e~~~y 74 (77)
T 1hme_A 33 SIGDVAKKLGEMWNNTAADDKQPY-------EKKAAKLKEKYEKDIAAY 74 (77)
T ss_dssp CHHHHHHHHHHHHHHSCGGGSHHH-------HHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999988 677777766676666655
No 42
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.77 E-value=2.7 Score=32.61 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=43.0
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhccCCCC
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQS 72 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (386)
...++-|.|.+.|+.|.+.+|..| ..-|..+.-++...|.+|-...+..
T Consensus 34 ~~~eisk~lg~~Wk~ls~eeK~~y-------~~~A~~~k~~y~~e~~~y~~~~~~~ 82 (92)
T 2cs1_A 34 SLEDATLQIEELWKTLSEEEKLKY-------EEKATKDLERYNSQMKRAIEQESQM 82 (92)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHH-------HHHHHTTTHHHHHHHHHHTSTTTCC
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 357889999999999999999999 8889999999999999998765543
No 43
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=56.12 E-value=16 Score=31.11 Aligned_cols=80 Identities=28% Similarity=0.326 Sum_probs=57.0
Q ss_pred hhHHhhhhhhhhhhcccCchHHH-HHhhhcC-cccc-ccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHH
Q psy8269 98 VLEVQGALSMLDLKTQALPLARI-KKIMKLD-DGVK-MISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174 (386)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~p~~ri-k~im~~~-~~v~-mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa 174 (386)
.+|+..-++..|.--..+|-.|+ |+|.+.- ++.. -++.+|......|.|.|.-++..-+..|+.-.+|-||+..||.
T Consensus 48 LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiq 127 (140)
T 3nqu_A 48 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 127 (140)
T ss_dssp -----------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 55665455677777777888885 6666432 2222 5689999999999999999999999999999999999999997
Q ss_pred HHH
Q psy8269 175 MAI 177 (386)
Q Consensus 175 ~aI 177 (386)
.+.
T Consensus 128 LAr 130 (140)
T 3nqu_A 128 LAR 130 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 44
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=55.75 E-value=27 Score=26.52 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=56.2
Q ss_pred cccCchHHHHHhhhcCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHH
Q psy8269 112 TQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAIT 178 (386)
Q Consensus 112 ~~~~p~~rik~im~~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~ 178 (386)
++.++-.++...++.-+.-..+.+|+.-++-.-.+-|+..++..+-+.+..++..++.-.|+...+-
T Consensus 3 ~~vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 3 HMVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp CCSSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred cccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 3456667777888776777788999999999999999999999999999999999988888866553
No 45
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=54.52 E-value=16 Score=28.20 Aligned_cols=46 Identities=30% Similarity=0.310 Sum_probs=42.5
Q ss_pred ccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHH
Q psy8269 132 MISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAI 177 (386)
Q Consensus 132 mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI 177 (386)
-++++|......|.|-|.-.+..-+..|+.-.||.|+++.|+..+.
T Consensus 27 R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ 72 (82)
T 3nqj_A 27 NWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLAR 72 (82)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHH
Confidence 5688999999999999999999999999999999999999997764
No 46
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=54.29 E-value=3.2 Score=32.22 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=37.8
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhc
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFA 67 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (386)
...++-+.|.+.|+.|.+++|..+ ..-|..+.-++...|.+|=.
T Consensus 34 ~~~eisk~lg~~Wk~ls~eeK~~Y-------~~~A~~~k~~y~~e~~~Y~~ 77 (92)
T 2crj_A 34 PFPEITKMLGAEWSKLQPAEKQRY-------LDEAEKEKQQYLKELWAYQQ 77 (92)
T ss_dssp CHHHHHHHHHHHHHTCCTTHHHHH-------HHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHc
Confidence 467899999999999999999998 77888888888888887754
No 47
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=52.70 E-value=11 Score=30.99 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=43.6
Q ss_pred cccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 133 ISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 133 i~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
+++|+...+...++.|...+..-.-..+.--+|++|+..||.+++-.
T Consensus 48 vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 48 FSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999888733
No 48
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=51.39 E-value=2 Score=31.15 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=33.1
Q ss_pred hhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 19 PKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
+++-|.+.+.|+.|++.+|..+ ..-|..+.-++...|..|
T Consensus 27 ~ei~k~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 27 QEKLKTVKENWKNLSDSEKELY-------IQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHH-------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCCHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999888 677777777777776654
No 49
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=50.89 E-value=4.4 Score=31.72 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 18 IPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
..++-+.|.+.|+.|++++|..| ..-|..+.-++...|.+|
T Consensus 52 ~~eisk~lg~~Wk~ls~eeK~~Y-------~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 52 VAAIGKMIGAAWNALSDEEKKPY-------ERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp SSHHHHHHHHTSSSSCSTTTSSS-------SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999998 677777777777777666
No 50
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.39 E-value=2.2 Score=32.65 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 18 IPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
..++-+.|.+.|+.|++.+|..+ ..-|..+.-++...|..|
T Consensus 45 ~~eisk~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 45 FAEFSKKCSERWKTMSGKEKSKF-------DEMAKADKVRYDREMKDY 85 (86)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHc
Confidence 37899999999999999999988 777777777777777665
No 51
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=47.77 E-value=2.5 Score=32.05 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhc
Q psy8269 19 PKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFA 67 (386)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (386)
.++-+.|.+.|+.|++.+|..| ..-|..+.-++...|.+|-.
T Consensus 38 ~eisk~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~y~~e~~~y~~ 79 (83)
T 1aab_A 38 SEFSKKCSERWKTMSAKEKGKF-------EDMAKADKARYEREMKTYIP 79 (83)
T ss_dssp SSSHHHHHHHHTTSCTTHHHHH-------HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Confidence 6788999999999999999988 77788888888888877743
No 52
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=45.79 E-value=3.6 Score=32.74 Aligned_cols=49 Identities=8% Similarity=0.079 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhccCCCC
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQS 72 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (386)
..+++-|.|.+.|+.|.+.||..| ..-|..+..++...|.+|-..-++.
T Consensus 33 ~~~eisK~lge~Wk~ls~~eK~~Y-------~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 33 PLKERMVEIGSRWQRISQSQKEHY-------KKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 356889999999999999999988 8889999999999999998755443
No 53
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.54 E-value=3.5 Score=32.70 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=39.3
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhcc
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFAS 68 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (386)
...++-+.|.+.|+.|.+.+|..| ..-|..+.-++...|.+|=..
T Consensus 44 ~~~eisk~lg~~Wk~ls~eeK~~Y-------~~~A~~~k~~y~~e~~~Y~~~ 88 (102)
T 2co9_A 44 TFGEVSKIVASMWDGLGEEQKQVY-------KKKTEAAKKEYLKQLAAYRAS 88 (102)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999999999 788888888899999888664
No 54
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=42.77 E-value=4.1 Score=30.64 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.4
Q ss_pred chhhHHHHHHHHhccCCCCCeeee
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYV 40 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~ 40 (386)
+.+++-+.|.+.|+.|+++||..+
T Consensus 31 ~~~eisk~lg~~Wk~ls~eeK~~y 54 (81)
T 1i11_A 31 HNSNISKILGSRWKAMTNLEKQPY 54 (81)
T ss_dssp CHHHHHHHHHHHHTTSCSGGGHHH
T ss_pred CHHHHHHHHHhhhhhCCHHHHHHH
Confidence 457889999999999999999877
No 55
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=42.22 E-value=2.9 Score=31.96 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=35.9
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhc
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFA 67 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (386)
..+++-+.|.+.|++|++++|..+ ..-|..+.-.+...+.+|=.
T Consensus 31 ~~~eisk~lg~~Wk~ls~eeK~~y-------~~~A~~~k~~y~~~~~~Yk~ 74 (85)
T 1j46_A 31 RNSEISKQLGYQWKMLTEAEKWPF-------FQEAQKLQAMHREKYPNYKY 74 (85)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHH-------HHHHHHHHHHHHHHCTTCCC
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHH-------HHHHHHHHHHHHHHCccccc
Confidence 457889999999999999999988 77777777777777777644
No 56
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=41.63 E-value=2.9 Score=31.37 Aligned_cols=44 Identities=11% Similarity=0.025 Sum_probs=35.2
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhc
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFA 67 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (386)
...++-+.|.+.|+.|++++|..+ ..-|..+.-++...+.+|=.
T Consensus 29 ~~~eisk~lg~~Wk~ls~eeK~~y-------~~~A~~~k~~y~~~~~~Yk~ 72 (80)
T 1gt0_D 29 HNSEISKRLGAEWKLLSETEKRPF-------IDEAKRLRALHMKEHPDYKY 72 (80)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHH-------HHHHHHHHHHHHHHCTTCCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHCccccc
Confidence 457889999999999999999988 67777776677777766643
No 57
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=40.74 E-value=5.3 Score=31.48 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=40.1
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhc
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFA 67 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (386)
...++-|.+...|+.|.+.||.-+ ..-|+.+..+|...|-.|-.
T Consensus 30 ~~~evsK~lGe~Wk~ls~~eK~py-------e~kA~~dK~rYekEm~~Y~~ 73 (91)
T 1l8y_A 30 DRVKALKAMEMTWNNMEKKEKLMW-------IKKAAEDQKRYERELSEMRA 73 (91)
T ss_dssp THHHHHHHHHHHHHTTGGGHHHHH-------HHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHc
Confidence 568889999999999999999888 88999999999999999855
No 58
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=40.46 E-value=3.2 Score=31.67 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=36.7
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhc
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFA 67 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (386)
..+++-+.|.+.|++|++++|..+ ..-|..+.-.+...+++|=.
T Consensus 29 ~~~eisk~lg~~Wk~ls~eeK~~y-------~~~A~~~k~~y~~~~~~Yk~ 72 (86)
T 2lef_A 29 ESAAINQILGRRWHALSREEQAKY-------YELARKERQLHMQLYPGWSA 72 (86)
T ss_dssp CHHHHHHHHHHHHTTSCHHHHHHH-------HHHHHHHHHHHHHHSTTCCS
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHHHHHHHHcccccC
Confidence 457889999999999999999988 77777777777777777744
No 59
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=40.18 E-value=2.6 Score=31.32 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=30.3
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
..+++-|.+.+.|+.|++.+|..+ ..-|..+.-.+...+++|
T Consensus 31 ~~~eisk~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~y~~~~~~Y 72 (76)
T 1hry_A 31 RNSEISKQLGYQWKMLTEAEKWPF-------FQEAQKLQAMHREKYPNY 72 (76)
T ss_dssp SSSHHHHHHHHHHHTCCHHHHHHH-------HHHHHHHHHHHHHHSSSC
T ss_pred CHHHHHHHHHhHHHhCCHHHHHHH-------HHHHHHHHHHHHHHCCCC
Confidence 457889999999999999999887 555555544444444443
No 60
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=39.17 E-value=49 Score=29.24 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=47.4
Q ss_pred HHHHHhhhc-CccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 118 ARIKKIMKL-DDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 118 ~rik~im~~-~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
..|+|++|. +|+.. |+.|+-.....-+.-+...+...+-+....+++++++..||..++-.
T Consensus 7 ~yi~kvLkqv~p~~~-iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHPDTG-ISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCCCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 457777763 45533 88888888877777777888888888888899999999999887743
No 61
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=38.50 E-value=2.5 Score=30.79 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred chhhHHHHHHHHhccCCCCCeeee
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYV 40 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~ 40 (386)
..+++-+.+.+.|+.|++.+|..+
T Consensus 29 ~~~eisk~lg~~Wk~ls~~eK~~y 52 (71)
T 4a3n_A 29 HNAELSKMLGKSWKALTLAEKRPF 52 (71)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 357899999999999999999877
No 62
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=37.84 E-value=4.7 Score=32.49 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=41.1
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhccCC
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNP 70 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (386)
...++-|.+.+.|+.|.+.||..| ..-|..+.-++...|.+|-...+
T Consensus 40 ~~~eisk~lg~~Wk~Ls~~eK~~Y-------~~~A~~~k~~Y~~e~~~Y~~~~~ 86 (108)
T 1v64_A 40 PSTERMVLCSQQWKLLSQKEKDAY-------HKKCDQKKKDYEVELLRFLESLP 86 (108)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhCC
Confidence 457889999999999999999988 88888899999999999977543
No 63
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=37.22 E-value=2.6 Score=31.85 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=31.8
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
...++-+.|.+.|+.|++.+|..+ ..-|..+.-++...+.+|
T Consensus 34 ~~~eisk~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~y~~~~~~y 75 (82)
T 1wz6_A 34 DNRGATKILADWWAVLDPKEKQKY-------TDMAKEYKDAFMKANPGY 75 (82)
T ss_dssp CTTHHHHHHHHHHHTCCHHHHHHH-------HHHHHHHHHHHCCSCSSC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHH-------HHHHHHHHHHHHHHhHHh
Confidence 457889999999999999999888 666666555555555544
No 64
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=36.54 E-value=3.5 Score=31.10 Aligned_cols=42 Identities=19% Similarity=0.130 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
..+++-+.+.+.|+.|.+.+|..+ ..-|..+.-.+...+.+|
T Consensus 33 ~~~eisk~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~y~~~~~~Y 74 (83)
T 3f27_D 33 HNAELSKMLGKSWKALTLAEKRPF-------VEEAERLRVQHMQDHPNY 74 (83)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHH-------HHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHHHHHHHHCCCC
Confidence 357899999999999999999888 666666655665555555
No 65
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=36.00 E-value=3.3 Score=30.89 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhh
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYF 66 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (386)
..+++-+.+.+.|+.|++.+|..+ ..-|..+...+...+++|=
T Consensus 29 ~~~eisk~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~y~~~~p~Yk 71 (79)
T 3u2b_C 29 HNAEISKRLGKRWKLLKDSDKIPF-------IQEAERLRLKHMADYPDYK 71 (79)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHH-------HHHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHCCCCe
Confidence 457899999999999999999888 5666666555555555553
No 66
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=34.14 E-value=4.6 Score=32.28 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=34.8
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhh
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYF 66 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (386)
...++-|.+.+.|+.|.+.+|..+ ..-|..+.-++...+.+|=
T Consensus 56 ~~~eisk~lg~~Wk~ls~eeK~~Y-------~~~A~~~k~~y~~e~~~Yk 98 (106)
T 4euw_A 56 HNAELSKTLGKLWRLLNESEKRPF-------VEEAERLRVQHKKDHPDYK 98 (106)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHHHHHHhhhcC
Confidence 457889999999999999999988 6777777777777766663
No 67
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=33.74 E-value=3.7 Score=31.52 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHhccCCCCCeeee
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYV 40 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~ 40 (386)
+..++-+.|.+.|++|++.||..+
T Consensus 44 ~~~eisk~lg~~Wk~ls~eeK~~y 67 (87)
T 2e6o_A 44 DNRAISVILGDRWKKMKNEERRMY 67 (87)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHH
Confidence 457889999999999999999887
No 68
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=32.52 E-value=43 Score=26.14 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=43.1
Q ss_pred cccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 133 ISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 133 i~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
+++++...+...++.+...+..-.-..+.--+|++|+..||..++-.
T Consensus 33 vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 33 YTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999887633
No 69
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=32.03 E-value=14 Score=27.00 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=31.1
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
..+++-|.|.+.|+.|.+ |..+ ..-+..+.-++...|.+|
T Consensus 30 ~~~eisk~lg~~Wk~ls~--K~~y-------~~~A~~~k~~y~~~~~~Y 69 (73)
T 3nm9_A 30 KVTEVAKRGGELWRAMKD--KSEW-------EAKAAKAKDDYDRAVKEF 69 (73)
T ss_dssp CHHHHHHHHHHHHHHCSC--CHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCc--hHHH-------HHHHHHHHHHHHHHHHHH
Confidence 468899999999999987 6655 566677777777777666
No 70
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.64 E-value=11 Score=32.61 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=35.8
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
..+++-+.|.+.|+.|++.+|..| ..-|..+.-++...|.+|
T Consensus 128 ~~~ei~k~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~y~~~~~~y 169 (173)
T 2yrq_A 128 SIGDVAKKLGEMWNNTAADDKQPY-------EKKAAKLKEKYEKDIAAY 169 (173)
T ss_dssp CHHHHHHHHHHHHHHSCGGGHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999988 777777777777777766
No 71
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=31.19 E-value=7.1 Score=33.15 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=35.6
Q ss_pred cchhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhh
Q psy8269 16 NDIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKY 65 (386)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (386)
...+++-+.|.+.|+.|++.||..+ ..-|..+.-++...|.+|
T Consensus 114 ~~~~ei~k~lg~~Wk~ls~~eK~~y-------~~~A~~~k~~y~~~~~~y 156 (159)
T 2gzk_A 114 LSIGDVAKKLGEMWNNTAADDKQPY-------EKKAAKLKEKYEKDIAAY 156 (159)
T ss_dssp CCHHHHHHHHHHHHHHSCHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999988 777777777777777665
No 72
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=30.51 E-value=12 Score=27.48 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhh
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYF 66 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (386)
..+++-|.|.+.|+.| .+|..+ ..-|..+.-++...|.+|=
T Consensus 30 ~~~eisk~lg~~Wk~l--~eK~~y-------~~~A~~~k~~y~~e~~~Y~ 70 (73)
T 1wxl_A 30 KVTEIAKKGGEMWKEL--KDKSKW-------EDAAAKDKQRYHDEMRNYK 70 (73)
T ss_dssp CHHHHHHHHHHHHHTC--TTHHHH-------HHHHHHHHHHHHTTTGGGT
T ss_pred CHHHHHHHHHHHHHhh--HhhHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999 788777 6667777777777776663
No 73
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=29.44 E-value=8.7 Score=29.57 Aligned_cols=40 Identities=13% Similarity=0.045 Sum_probs=31.4
Q ss_pred cchhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHH
Q psy8269 16 NDIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVL 62 (386)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (386)
....++-+.|.+.|+.|++.+|..| ..-|..+.-++...|
T Consensus 46 ~~~~eisk~lg~~Wk~ls~eeK~~Y-------~~~A~~~k~~y~~e~ 85 (90)
T 1wgf_A 46 LSESELTRLLARMWNDLSEKKKAKY-------KAREAALKAQSERKS 85 (90)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHH-------HHHHHHHTTTTCCCC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3567899999999999999999888 666666666665544
No 74
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=28.26 E-value=3.9 Score=31.82 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=36.4
Q ss_pred chhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhh
Q psy8269 17 DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYF 66 (386)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (386)
...++-+.|.+.|+.|++++|..| ..-|..+.-++...|.+|=
T Consensus 47 ~~~eisk~lg~~Wk~ls~eeK~~y-------~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 47 TFGQVGKKLGEKWKALTPEEKQPY-------EAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CHHHHTTTHHHHHHTTHHHHHHHH-------HHHHTTHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999988 7778888888888887764
No 75
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=27.54 E-value=56 Score=26.35 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=43.6
Q ss_pred ccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 132 MISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 132 mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
-+++++...+...++.|...+...+-.+..--+|++|+..||..++-.
T Consensus 39 ~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 39 LFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 479999999999999999999999999999999999999999888743
No 76
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=26.20 E-value=1.1e+02 Score=25.33 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=47.3
Q ss_pred cCchHHHHHhhh-cCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 114 ALPLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 114 ~~p~~rik~im~-~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
+-.-..|.|++| .+|+. -|+.++-.+...-.+-..+.+...+-.....++|+||+..||..++-.
T Consensus 33 esy~~YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 98 (123)
T 2nqb_D 33 ESYAIYIYTVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRL 98 (123)
T ss_dssp CCSHHHHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence 344456666665 45553 367777777766666666777778888888999999999999888754
No 77
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=26.14 E-value=71 Score=27.02 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=43.5
Q ss_pred cccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 133 ISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 133 i~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
+++|+...+...++.|...+..-.-..+.--+|++|+..||.+++-.
T Consensus 40 vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 40 FSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999998833
No 78
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=24.72 E-value=1.2e+02 Score=25.19 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=48.3
Q ss_pred cCchHHHHHhhh-cCccccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHHHHH
Q psy8269 114 ALPLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITK 179 (386)
Q Consensus 114 ~~p~~rik~im~-~~~~v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~aI~~ 179 (386)
+-.-..|.|++| .+|+.. |+.++-.+...-.+-..+.+...+-.....++|+||+..||..++-.
T Consensus 36 esy~~YIyKVLKQVhpd~g-ISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 101 (126)
T 1tzy_B 36 ESYSIYVYKVLKQVHPDTG-ISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL 101 (126)
T ss_dssp CCCHHHHHHHHHHHCTTCE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 344456777776 455533 77777777776666666777788888899999999999999888754
No 79
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=24.69 E-value=1.3e+02 Score=27.49 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=48.3
Q ss_pred cCchHH-HHHhhhcCcc---ccccccchhhHHHHHHHHHHHHHhHHhhHhhhhccccccchhhHHHH
Q psy8269 114 ALPLAR-IKKIMKLDDG---VKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMA 176 (386)
Q Consensus 114 ~~p~~r-ik~im~~~~~---v~mi~~~~~~l~~~a~e~fi~~lt~rsw~~~~~~kr~~iq~~DIa~a 176 (386)
.+|-.| +|+|.+.-.. ---..++|....--|+|.|.-.+-.-+..|+--.||-|+++.|+..+
T Consensus 14 KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLa 80 (235)
T 2l5a_A 14 KIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLA 80 (235)
T ss_dssp CCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHH
T ss_pred CccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHH
Confidence 356655 4566654322 12458888888889999999999999999999999999999998554
No 80
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=22.97 E-value=25 Score=32.03 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHhccCCCCCeeeehhhhHHHHHHHhhcCCccchHHHhhhccCCCC
Q psy8269 18 IPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQS 72 (386)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (386)
-+++-|.|.+.|+.|.+.||..| ..-|..+.-+|...|..|=...|..
T Consensus 170 p~ei~k~lg~~Wk~ls~~eK~~Y-------~~~A~~~k~~Y~~e~~~y~~k~~~~ 217 (238)
T 3tmm_A 170 PQEKLKTVKENWKNLSDSEKELY-------IQHAKEDETRYHNEMKSWEEQMIEV 217 (238)
T ss_dssp HHHHHHHHHHHHHTCCTTTTHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCccc
Confidence 35788999999999999999998 8889999999999999987755443
Done!