RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8269
(386 letters)
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 108 bits (271), Expect = 5e-30
Identities = 68/78 (87%), Positives = 75/78 (96%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
LPLARIKKIMKLD+ VKMISAEAP+LF+KAA++FI ELT+RAWIHTEDNKRRTLQRNDIA
Sbjct: 1 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIA 60
Query: 175 MAITKYDMFDFLIDIVPR 192
MAITK+D FDFLIDIVPR
Sbjct: 61 MAITKFDQFDFLIDIVPR 78
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 100 bits (250), Expect = 5e-27
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 124 MKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHT-EDNKRRTLQRNDIAMAITKYDM 182
MK +I+ E L +K ELF+ L A+ L+ ++ + K
Sbjct: 1 MKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKN 60
Query: 183 FDFLIDIVPR 192
+FL+ IVP+
Sbjct: 61 LEFLLQIVPQ 70
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 96.9 bits (241), Expect = 5e-25
Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
+P A I K++K ++ +A L FIH ++ A ++++T+ +
Sbjct: 5 IPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVI 64
Query: 175 MAITKYDMFDFLIDIVP-----REEVK 196
A+ ++ ++ +
Sbjct: 65 QALESLGFGSYISEVKEVLQECKTVAL 91
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 91.8 bits (228), Expect = 9e-24
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 116 PLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
P A I +++K +S EA ++AA +F +T + +T+ DI
Sbjct: 1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDIL 60
Query: 175 MAITKYDMFDFLIDIVPRE 193
+T+ D F+ + + ++
Sbjct: 61 QTLTELD-FESFVPSLTQD 78
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 90.3 bits (224), Expect = 4e-23
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 115 LPLARIKKIMK-LDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDI 173
LP+A + +IMK I+ +A + FI +T A KR+T+ DI
Sbjct: 3 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62
Query: 174 AMAITKYDMFDFLIDIVP 191
A++ ++ +
Sbjct: 63 LFAMSTLGFDSYVEPLKL 80
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 86.3 bits (214), Expect = 6e-22
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
P ARIKKIM+ D+ + ++A P++ S+A ELF+ L +A T+ +T+ + +
Sbjct: 3 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 62
Query: 175 MAI 177
I
Sbjct: 63 QCI 65
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 80.2 bits (198), Expect = 9e-20
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
LP+A I +I+K + G + +S +A + +K E E+ A + R+T++ DI
Sbjct: 4 LPIAPIGRIIK-NAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIE 62
Query: 175 MAITKY 180
+A +
Sbjct: 63 LARKMF 68
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 80.2 bits (198), Expect = 1e-19
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
LP+A + ++++ G + +S +A + ++ E + E+ +A R+T++ DI
Sbjct: 3 LPIAPVDRLIR-KAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIK 61
Query: 175 MAI 177
+AI
Sbjct: 62 LAI 64
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 81.4 bits (201), Expect = 3e-19
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 100 EVQGALSML------DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELT 153
++ +L D + A +++I+K G++ S++A L++K EL
Sbjct: 59 HLKALADVLMVEGVEDYDGELFGRATVRRILK-RAGIERASSDAVDLYNKLICRATEELG 117
Query: 154 IRAWIHTEDNKRRTLQRNDIAMAITK 179
+A + +++ R+T+Q D+ AIT
Sbjct: 118 EKAAEYADEDGRKTVQGEDVEKAITY 143
Score = 46.3 bits (110), Expect = 7e-07
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
LP A I++I + G + +S +A + A + + ++TL +
Sbjct: 2 LPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLK 61
Query: 175 MAI 177
Sbjct: 62 ALA 64
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Length = 180
Score = 57.8 bits (139), Expect = 1e-10
Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 10/138 (7%)
Query: 222 MLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVR 281
H S +HI N+ + + LG + + L + +++ +
Sbjct: 48 YFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKF----- 102
Query: 282 KPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRWR 341
G SG + A++ + + +++ ++ + +
Sbjct: 103 SGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLII---FALIWIVAGWFDLFGMS- 158
Query: 342 LFDHAAHLGGALFGILYS 359
+ AH+ G G+ +
Sbjct: 159 -MANGAHIAGLAVGLAMA 175
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
influenzae [TaxId: 727]}
Length = 189
Score = 55.2 bits (132), Expect = 1e-09
Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 10/137 (7%)
Query: 222 MLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVR 281
+ T H S LHI N+ F G + + Y+ A + +
Sbjct: 50 YISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYV----- 104
Query: 282 KPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRWR 341
G SG + AVL + I + + L F+ LF
Sbjct: 105 SGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFT----MLLVGIALGFISPLFGVE 160
Query: 342 LFDHAAHLGGALFGILY 358
+AAH+ G + G+++
Sbjct: 161 -MGNAAHISGLIVGLIW 176
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 45.9 bits (109), Expect = 1e-06
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
LP+ +I ++K + I + + E ++ A + + + + + DI
Sbjct: 100 LPVEKIHPLLK-EVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIK 158
Query: 175 MAI 177
+A+
Sbjct: 159 VAM 161
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 37.8 bits (88), Expect = 1e-04
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 113 QALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRND 172
Q + I+++ + GVK IS ++F+ + A +TE KR+T+ D
Sbjct: 8 QGITKPAIRRLAR-RGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMD 66
Query: 173 IAMA 176
+ A
Sbjct: 67 VVYA 70
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 30.5 bits (69), Expect = 0.082
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
P+ R+ + +K I AP+ + E E+ A DNK+ + I
Sbjct: 12 FPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHIL 71
Query: 175 MAI 177
+A+
Sbjct: 72 LAV 74
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 26.7 bits (59), Expect = 1.9
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
P+ R+ ++++ + + + A AP+ + E E+ A DNK+ + +
Sbjct: 13 FPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQ 72
Query: 175 MAI 177
+AI
Sbjct: 73 LAI 75
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 150
Score = 26.9 bits (59), Expect = 2.6
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 40 VPILFLNGVVFLAWFYPRL---HPVLYKYFASNPQSMGITLRLHA 81
P+L +G + FY R+ HP L F Q G + A
Sbjct: 14 APVLAEHGYDIIKCFYQRMFEAHPELKNVFNMAHQEQGQQQQALA 58
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 25.4 bits (56), Expect = 3.3
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 10/49 (20%)
Query: 342 LFDH-AAHLG---GALFGILYSKYGEQTWAHRAPVVEYWKSLKKQIGGG 386
LFD LG FG+ Y+ W ++ K +
Sbjct: 27 LFDLVCRTLGLRETWFFGLQYTIKDTVAW------LKMDKKVLDHDVSK 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.429
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,473,130
Number of extensions: 68360
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 21
Length of query: 386
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,213,086
Effective search space: 362712714
Effective search space used: 362712714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.1 bits)