BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy827
(2693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T8S|A Chain A, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
pdb|3T8S|B Chain B, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
Length = 585
Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/589 (71%), Positives = 495/589 (84%), Gaps = 12/589 (2%)
Query: 9 SFLHLGDIVSLFAEGNVCGFLSTLGLVDDRTVVCPDAGDLANAPKKFRDCLFKICPMNRY 68
SFLH+GDI SL+AEG+ GF+STLGLVDDR VV P+AGDL N PKKFRDCLFK+CPMNRY
Sbjct: 5 SFLHIGDICSLYAEGSTNGFISTLGLVDDRCVVQPEAGDLNNPPKKFRDCLFKLCPMNRY 64
Query: 69 SAQKQFWKAAKQSASSTTDAVLLKRLHHAAEIEKKQNESENKKLLGMVVQYGSVVQLLHL 128
SAQKQFWKAAK A+STTDAVLL +LHHAA++EKKQNE+EN+KLLG V+QYG+V+QLLHL
Sbjct: 65 SAQKQFWKAAKPGANSTTDAVLLNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLHL 124
Query: 129 KSNKFLTVNKRLPALLEKNAMRVYLDANGNEGSWFYILPFYKLRSTGDNVVVGDKVIMNP 188
KSNK+LTVNKRLPALLEKNAMRV LD GNEGSWFYI PFYKLRS GD+VV+GDKV++NP
Sbjct: 125 KSNKYLTVNKRLPALLEKNAMRVTLDEAGNEGSWFYIQPFYKLRSIGDSVVIGDKVVLNP 184
Query: 189 VNAGQQVLHVAANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQEEILKGGDVVRLFH 248
VNAGQ LH A++++L DNPGC EVN VN +TSWK+ LFM+ +N+++ILKGGDVVRLFH
Sbjct: 185 VNAGQP-LH-ASSHQLVDNPGCNEVNSVNCNTSWKIVLFMKWSDNKDDILKGGDVVRLFH 242
Query: 249 AEQEKFLTMDEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQHDPCRGGAGHWNCLFR 308
AEQEKFLT DE++KKQHVFL KALWE+EVVQHDPCRGGAG+WN LFR
Sbjct: 243 AEQEKFLTCDEHRKKQHVFLRTTGRQSATSATSSKALWEVEVVQHDPCRGGAGYWNSLFR 302
Query: 309 FKHLATGHYLAAEIDTDETMDQMRSKLRDHHGGSVYHLVSVPHPNEISSLFELDPTTLTR 368
FKHLATGHYLAAE+D D+ D RS+LR+ VY LVSVP N+ISS+FELDPTTL
Sbjct: 303 FKHLATGHYLAAEVDPDQ--DASRSRLRNAQEKMVYSLVSVPEGNDISSIFELDPTTLRG 360
Query: 369 ADSLVPQSSYVRLHHLCTNTWVHSTSIPIDKDEEKPV----GCAPLKEDKEAFALIPVSP 424
DSLVP++SYVRL HLCTNTWVHST+IPIDK+EEKPV G +PLKEDKEAFA++PVSP
Sbjct: 361 GDSLVPRNSYVRLRHLCTNTWVHSTNIPIDKEEEKPVMLKIGTSPLKEDKEAFAIVPVSP 420
Query: 425 TEVRDLDFANDACKVLAANSSKLENGSISQNERRAVTSLLQDIVYFIAGLENEQNKSEAL 484
EVRDLDFANDA KVL + + KLE G+I+QNERR+VT LL+D+VYF+ G N + + L
Sbjct: 421 AEVRDLDFANDASKVLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTN--SGQDVL 478
Query: 485 ELSVVNPNRDRQKLLREQYILKQLFKILQAPFLEIVEGEGPFLRIEELNDPKNAPYKYMF 544
E+ PNR+RQKL+REQ ILKQ+FK+LQAPF + G+GP LR+EEL D ++AP++++
Sbjct: 479 EVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDC--GDGPMLRLEELGDQRHAPFRHIC 536
Query: 545 RLCYRILRLSQQDYRKNQEYIAKHFGFMQKQIGYDILAEDTITALLHNN 593
RLCYR+LR SQQDYRKNQEYIAK FGFMQKQIGYD+LAEDTITALLHNN
Sbjct: 537 RLCYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYDVLAEDTITALLHNN 585
>pdb|3UJ0|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ0|B Chain B, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ4|A Chain A, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
pdb|3UJ4|B Chain B, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
Length = 604
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/605 (68%), Positives = 492/605 (81%), Gaps = 23/605 (3%)
Query: 8 ASFLHLGDIVSLFAEGNVCGFLSTLGLVDDRTVVCPDAGDLANAPKKFRDCLFKICPMNR 67
+SFLH+GDI SL+AEG+ GF+STLGLVDDR VV P+AGDL N PKKFRD LFK+ PMNR
Sbjct: 6 SSFLHIGDIASLYAEGSTNGFISTLGLVDDRAVVQPEAGDLNNPPKKFRDALFKLAPMNR 65
Query: 68 YSAQKQFWKAAKQSASSTTDAVLLKRLHHAAEIEKKQNESENKKLLGMVVQYGSVVQLLH 127
YSAQKQFWKAAK A+STTDAVLL +LHHAA++EKKQNE+EN+KLLG V+QYG+V+QLLH
Sbjct: 66 YSAQKQFWKAAKPGANSTTDAVLLNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLH 125
Query: 128 LKSNKFLTVNKRLPALLEKNAMRVYLDANGNEGSWFYILPFYKLRSTGDNVVVGDKVIMN 187
LKSNK+LTVNKRLPALLEKNAMRV LD GNEGSWFYI PFYKLRS GD+VV+GDKV++N
Sbjct: 126 LKSNKYLTVNKRLPALLEKNAMRVTLDEAGNEGSWFYIQPFYKLRSIGDSVVIGDKVVLN 185
Query: 188 PVNAGQQVLHVAANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQEEILKGGDVVRLF 247
PVNAGQ LH A++++L DNPG EVN VN++TSWK+ LFM+ +N+++ILKGGDVVRLF
Sbjct: 186 PVNAGQP-LH-ASSHQLVDNPGANEVNSVNANTSWKIVLFMKWSDNKDDILKGGDVVRLF 243
Query: 248 HAEQEKFLTMDEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQHDPCRGGAGHWNCLF 307
HAEQEKFLT DE++KKQHVFL KALWE+EVVQHDP RGGAG+WN LF
Sbjct: 244 HAEQEKFLTADEHRKKQHVFLRTTGRQSATSATSSKALWEVEVVQHDPARGGAGYWNSLF 303
Query: 308 RFKHLATGHYLAAEID-------------TDETMDQMRSKLRDHHGGSVYHLVSVPHPNE 354
RFKHLATGHYLAAE+D D D RS+LR+ VY LVSVP N+
Sbjct: 304 RFKHLATGHYLAAEVDPDFEEEALEFQPSVDPDQDASRSRLRNAQEKMVYSLVSVPEGND 363
Query: 355 ISSLFELDPTTLTRADSLVPQSSYVRLHHLCTNTWVHSTSIPIDKDEEKPV----GCAPL 410
ISS+FELDPTTL DSLVP++SYVRL HL TNTWVHST+IPIDK+EEKPV G +PL
Sbjct: 364 ISSIFELDPTTLRGGDSLVPRNSYVRLRHLATNTWVHSTNIPIDKEEEKPVMLKIGTSPL 423
Query: 411 KEDKEAFALIPVSPTEVRDLDFANDACKVLAANSSKLENGSISQNERRAVTSLLQDIVYF 470
KEDKEAFA++PVSP EVRDLDFANDA KVL + + KLE G+I+QNERR+VT LL+D+VYF
Sbjct: 424 KEDKEAFAIVPVSPAEVRDLDFANDASKVLGSIAGKLEKGTITQNERRSVTKLLEDLVYF 483
Query: 471 IAGLENEQNKSEALELSVVNPNRDRQKLLREQYILKQLFKILQAPFLEIVEGEGPFLRIE 530
+ G N + + LE+ PNR+RQKL+REQ ILKQ+FK+LQAPF + G+GP LR+E
Sbjct: 484 VTGGTN--SGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDA--GDGPMLRLE 539
Query: 531 ELNDPKNAPYKYMFRLCYRILRLSQQDYRKNQEYIAKHFGFMQKQIGYDILAEDTITALL 590
EL D ++AP++++ RL YR+LR SQQDYRKNQEYIAK FGFMQKQIGYD+LAEDTITALL
Sbjct: 540 ELGDQRHAPFRHIARLAYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYDVLAEDTITALL 599
Query: 591 HNNRK 595
HNNRK
Sbjct: 600 HNNRK 604
>pdb|1N4K|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor Binding Core In Complex With Ip3
Length = 381
Score = 523 bits (1347), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/385 (65%), Positives = 301/385 (78%), Gaps = 21/385 (5%)
Query: 228 MEHRENQEEILKGGDVVRLFHAEQEKFLTMDEYKKKQHVFLXXXXXXXXXXXXXXKALWE 287
M+ +N+++ILKGGDVVRLFHAEQEKFLT DE++KKQHVFL KALWE
Sbjct: 1 MKWSDNKDDILKGGDVVRLFHAEQEKFLTCDEHRKKQHVFLRTTGRQSATSATSSKALWE 60
Query: 288 IEVVQHDPCRGGAGHWNCLFRFKHLATGHYLAAEID-------------TDETMDQMRSK 334
+EVVQHDPCRGGAG+WN LFRFKHLATGHYLAAE+D D D RS+
Sbjct: 61 VEVVQHDPCRGGAGYWNSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASRSR 120
Query: 335 LRDHHGGSVYHLVSVPHPNEISSLFELDPTTLTRADSLVPQSSYVRLHHLCTNTWVHSTS 394
LR+ VY LVSVP N+ISS+FELDPTTL DSLVP++SYVRL HLCTNTWVHST+
Sbjct: 121 LRNAQEKMVYSLVSVPEGNDISSIFELDPTTLRGGDSLVPRNSYVRLRHLCTNTWVHSTN 180
Query: 395 IPIDKDEEKPV----GCAPLKEDKEAFALIPVSPTEVRDLDFANDACKVLAANSSKLENG 450
IPIDK+EEKPV G +PLKEDKEAFA++PVSP EVRDLDFANDA KVL + + KLE G
Sbjct: 181 IPIDKEEEKPVMLKIGTSPLKEDKEAFAIVPVSPAEVRDLDFANDASKVLGSIAGKLEKG 240
Query: 451 SISQNERRAVTSLLQDIVYFIAGLENEQNKSEALELSVVNPNRDRQKLLREQYILKQLFK 510
+I+QNERR+VT LL+D+VYF+ G N + + LE+ PNR+RQKL+REQ ILKQ+FK
Sbjct: 241 TITQNERRSVTKLLEDLVYFVTGGTN--SGQDVLEVVFSKPNRERQKLMREQNILKQIFK 298
Query: 511 ILQAPFLEIVEGEGPFLRIEELNDPKNAPYKYMFRLCYRILRLSQQDYRKNQEYIAKHFG 570
+LQAPF + G+GP LR+EEL D ++AP++++ RLCYR+LR SQQDYRKNQEYIAK FG
Sbjct: 299 LLQAPFTDC--GDGPMLRLEELGDQRHAPFRHICRLCYRVLRHSQQDYRKNQEYIAKQFG 356
Query: 571 FMQKQIGYDILAEDTITALLHNNRK 595
FMQKQIGYD+LAEDTITALLHNNRK
Sbjct: 357 FMQKQIGYDVLAEDTITALLHNNRK 381
>pdb|1XZZ|A Chain A, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 1 Inositol 1,4,5-trisphosphate Receptor
Length = 246
Score = 362 bits (928), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 170/222 (76%), Positives = 198/222 (89%), Gaps = 2/222 (0%)
Query: 8 ASFLHLGDIVSLFAEGNVCGFLSTLGLVDDRTVVCPDAGDLANAPKKFRDCLFKICPMNR 67
+SFLH+GDI SL+AEG+ GF+STLGLVDDR VV P+AGDL N PKKFRDCLFK+CPMNR
Sbjct: 21 SSFLHIGDICSLYAEGSTNGFISTLGLVDDRCVVQPEAGDLNNPPKKFRDCLFKLCPMNR 80
Query: 68 YSAQKQFWKAAKQSASSTTDAVLLKRLHHAAEIEKKQNESENKKLLGMVVQYGSVVQLLH 127
YSAQKQFWKAAK A+STTDAVLL +LHHAA++EKKQNE+EN+KLLG V+QYG+V+QLLH
Sbjct: 81 YSAQKQFWKAAKPGANSTTDAVLLNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLH 140
Query: 128 LKSNKFLTVNKRLPALLEKNAMRVYLDANGNEGSWFYILPFYKLRSTGDNVVVGDKVIMN 187
LKSNK+LTVNKRLPALLEKNAMRV LD GNEGSWFYI PFYKLRS GD+VV+GDKV++N
Sbjct: 141 LKSNKYLTVNKRLPALLEKNAMRVTLDEAGNEGSWFYIQPFYKLRSIGDSVVIGDKVVLN 200
Query: 188 PVNAGQQVLHVAANYELPDNPGCKEVNVVNSSTSWKVTLFME 229
PVNAGQ LH A++++L DNPGC EVN VN +TSWK+ LF+E
Sbjct: 201 PVNAGQP-LH-ASSHQLVDNPGCNEVNSVNCNTSWKIVLFLE 240
>pdb|3JRR|A Chain A, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 3 Inositol 1,4,5-Trisphosphate Receptor
pdb|3JRR|B Chain B, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 3 Inositol 1,4,5-Trisphosphate Receptor
Length = 226
Score = 344 bits (882), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 168/229 (73%), Positives = 194/229 (84%), Gaps = 7/229 (3%)
Query: 1 MNDMIGSASFLHLGDIVSLFAEGNVCGFLSTLGLVDDRTVVCPDAGDLANAPKKFRDCLF 60
MN+M +SFLH+GDIVSL+AEG+V GF+STLGLVDDR VV P AGDL N PKKFRDCLF
Sbjct: 3 MNEM---SSFLHIGDIVSLYAEGSVNGFISTLGLVDDRCVVEPAAGDLDNPPKKFRDCLF 59
Query: 61 KICPMNRYSAQKQFWKA--AKQSASSTTDAVLLKRLHHAAEIEKKQNESENKKLLGMVVQ 118
K+CPMNRYSAQKQ+WKA KQ D VLL++L HAA++E+KQN++ENKK+ G VV+
Sbjct: 60 KVCPMNRYSAQKQYWKAKQTKQDKEKIADVVLLQKLQHAAQMEQKQNDTENKKVHGDVVK 119
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYLDANGNEGSWFYILPFYKLRSTGDNV 178
YGSV+QLLH+KSNK+LTVNKRLPALLEKNAMRV LDA GNEGSW +I PF+KLRS GDNV
Sbjct: 120 YGSVIQLLHMKSNKYLTVNKRLPALLEKNAMRVTLDATGNEGSWLFIQPFWKLRSNGDNV 179
Query: 179 VVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVVNSSTSWKVTLF 227
VVGDKVI+NPVNAGQ LH A+NYEL DN GCKEVN VN +TSWK+ LF
Sbjct: 180 VVGDKVILNPVNAGQP-LH-ASNYELSDNAGCKEVNSVNCNTSWKINLF 226
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 103 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 161
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA-ANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQE 235
V VGD +I+ V++ ++ LH++ A+ EL +V+ T W + E E
Sbjct: 162 KVRVGDDLILVSVSS-ERYLHLSTASGEL-------QVDASFMQTLWNMNPICSCCE--E 211
Query: 236 EILKGGDVVRLFHAEQEKFLTM---DEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQ 292
+ GG V+RLFH ++ LT+ D +++ V+ ++LW +E
Sbjct: 212 GYVTGGHVLRLFHGHMDECLTISAADSDDQRRLVYY-----EGGAVCTHARSLWRLE--- 263
Query: 293 HDPCR----GGAGHWNCLFRFKHLATGHYLA 319
P R G W R +H+ TG YLA
Sbjct: 264 --PLRISWSGSHLRWGQPLRIRHVTTGRYLA 292
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 103 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 161
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA-ANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQE 235
V VGD +I+ V++ ++ LH++ A+ EL +V+ T W + E E
Sbjct: 162 KVRVGDDLILVSVSS-ERYLHLSTASGEL-------QVDASFMQTLWNMNPICSCCE--E 211
Query: 236 EILKGGDVVRLFHAEQEKFLTM---DEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQ 292
+ GG V+RLFH ++ LT+ D +++ V+ ++LW +E
Sbjct: 212 GYVTGGHVLRLFHGHMDECLTISAADSDDQRRLVYY-----EGGAVCTHARSLWRLE--- 263
Query: 293 HDPCR----GGAGHWNCLFRFKHLATGHYLA 319
P R G W R +H+ TG YLA
Sbjct: 264 --PLRISWSGSHLRWGQPLRIRHVTTGRYLA 292
>pdb|4I0Y|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant C36r
Length = 536
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 103 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 161
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA-ANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQE 235
V VGD +I+ V++ ++ LH++ A+ EL +V+ T W + E E
Sbjct: 162 KVRVGDDLILVSVSS-ERYLHLSTASGEL-------QVDASFMQTLWNMNPICSCCE--E 211
Query: 236 EILKGGDVVRLFHAEQEKFLTM---DEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQ 292
+ GG V+RLFH ++ LT+ D +++ V+ ++LW +E
Sbjct: 212 GYVTGGHVLRLFHGHMDECLTISAADSDDQRRLVYY-----EGGAVCTHARSLWRLE--- 263
Query: 293 HDPCR----GGAGHWNCLFRFKHLATGHYLA 319
P R G W R +H+ TG YLA
Sbjct: 264 --PLRISWSGSHLRWGQPLRIRHVTTGRYLA 292
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 103 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 161
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA-ANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQE 235
V VGD +I+ V++ ++ LH++ A+ EL +V+ T W + E E
Sbjct: 162 KVRVGDDLILVSVSS-ERYLHLSTASGEL-------QVDASFMQTLWNMNPICSCCE--E 211
Query: 236 EILKGGDVVRLFHAEQEKFLTM---DEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQ 292
+ GG V+RLFH ++ LT+ D +++ V+ ++LW +E
Sbjct: 212 GYVTGGHVLRLFHGHMDECLTISAADSDDQRRLVYY-----ERGAVCTHARSLWRLE--- 263
Query: 293 HDPCR----GGAGHWNCLFRFKHLATGHYLA 319
P R G W R +H+ TG YLA
Sbjct: 264 --PLRISWSGSHLRWGQPLRIRHVTTGRYLA 292
>pdb|2XOA|A Chain A, Crystal Structure Of The N-Terminal Three Domains Of The
Skeletal Muscle Ryanodine Receptor (Ryr1)
Length = 559
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 103 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 161
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA-ANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQE 235
V VGD +I+ V++ ++ LH++ A+ EL +V+ T W + E E
Sbjct: 162 KVRVGDDLILVSVSS-ERYLHLSTASGEL-------QVDASFMQTLWNMNPICSCCE--E 211
Query: 236 EILKGGDVVRLFHAEQEKFLTM---DEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQ 292
+ GG V+RLFH ++ LT+ D +++ V+ ++LW +E
Sbjct: 212 GYVTGGHVLRLFHGHMDECLTISAADSDDQRRLVYY-----EGGAVCTHARSLWRLE--- 263
Query: 293 HDPCR----GGAGHWNCLFRFKHLATGHYLA 319
P R G W R +H+ TG YLA
Sbjct: 264 --PLRISWSGSHLRWGQPLRIRHVTTGRYLA 292
>pdb|4I2S|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant I404m
Length = 536
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 103 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 161
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA-ANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQE 235
V VGD +I+ V++ ++ LH++ A+ EL +V+ T W + E E
Sbjct: 162 KVRVGDDLILVSVSS-ERYLHLSTASGEL-------QVDASFMQTLWNMNPICSCCE--E 211
Query: 236 EILKGGDVVRLFHAEQEKFLTM---DEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQ 292
+ GG V+RLFH ++ LT+ D +++ V+ ++LW +E
Sbjct: 212 GYVTGGHVLRLFHGHMDECLTISAADSDDQRRLVYY-----EGGAVCTHARSLWRLE--- 263
Query: 293 HDPCR----GGAGHWNCLFRFKHLATGHYLA 319
P R G W R +H+ TG YLA
Sbjct: 264 --PLRISWSGSHLRWGQPLRIRHVTTGRYLA 292
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 103 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 161
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA-ANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQE 235
V VGD +I+ V++ ++ LH++ A+ EL +V+ T W + E E
Sbjct: 162 KVRVGDDLILVSVSS-ERYLHLSTASGEL-------QVDASFMQTLWNMNPICSCCE--E 211
Query: 236 EILKGGDVVRLFHAEQEKFLTM---DEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQ 292
+ GG V+RLFH ++ LT+ D +++ V+ ++LW +E
Sbjct: 212 GYVTGGHVLRLFHGHMDECLTISAADSDDQRRLVYY-----EGGAVCTHARSLWRLE--- 263
Query: 293 HDPCR----GGAGHWNCLFRFKHLATGHYLA 319
P R G W R +H+ TG YLA
Sbjct: 264 --PLRISWSGSHLRWGQPLRIRHVTTGRYLA 292
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 103 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 161
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA-ANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQE 235
V VGD +I+ V++ ++ LH++ A+ EL +V+ T W + E E
Sbjct: 162 KVRVGDDLILVSVSS-ERYLHLSTASGEL-------QVDASFMQTLWNMNPICSCCE--E 211
Query: 236 EILKGGDVVRLFHAEQEKFLTM---DEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQ 292
+ GG V+RLFH ++ LT+ D +++ V+ ++LW +E
Sbjct: 212 GYVTGGHVLRLFHGHMDECLTISAADSDDQRRLVYY-----EGGAVCTHARSLWRLE--- 263
Query: 293 HDPCR----GGAGHWNCLFRFKHLATGHYLA 319
P R G W R +H+ TG YLA
Sbjct: 264 --PLRISWSGSHLRWGQPLRIRHVTTGRYLA 292
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 31/211 (14%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 103 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 161
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA-ANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQE 235
V VGD +I+ V++ ++ LH++ A+ EL +V+ T W + E E
Sbjct: 162 KVRVGDDLILVSVSS-ERYLHLSTASGEL-------QVDASFMQTLWNMNPICSCCE--E 211
Query: 236 EILKGGDVVRLFHAEQEKFLTM---DEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQ 292
+ GG ++RLFH ++ LT+ D +++ V+ ++LW +E
Sbjct: 212 GYVTGGHILRLFHGHMDECLTISAADSDDQRRLVYY-----EGGAVCTHARSLWRLE--- 263
Query: 293 HDPCR----GGAGHWNCLFRFKHLATGHYLA 319
P R G W R +H+ TG YLA
Sbjct: 264 --PLRISWSGSHLRWGQPLRIRHVTTGRYLA 292
>pdb|3HSM|A Chain A, Crystal Structure Of Distal N-Terminal Beta-Trefoil Domain
Of Ryanodine Receptor Type 1
pdb|3HSM|B Chain B, Crystal Structure Of Distal N-Terminal Beta-Trefoil Domain
Of Ryanodine Receptor Type 1
Length = 213
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 106 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 164
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA-ANYEL 204
V VGD +I+ V++ ++ LH++ A+ EL
Sbjct: 165 KVRVGDDLILVSVSS-ERYLHLSTASGEL 192
>pdb|3ILA|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|B Chain B, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|C Chain C, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|D Chain D, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|E Chain E, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|F Chain F, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|G Chain G, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|H Chain H, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
pdb|3ILA|I Chain I, Crystal Structure Of Rabbit Ryanodine Receptor 1
N-Terminal Domain (9- 205)
Length = 197
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L+ ++ +K A V L DA G E W+ + P K RS G+
Sbjct: 95 YGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG-EACWWTMHPASKQRSEGE 153
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA 199
V VGD +I+ V++ ++ LH++
Sbjct: 154 KVRVGDDLILVSVSS-ERYLHLS 175
>pdb|3IM7|A Chain A, Crystal Structure Of Mouse Ryanodine Receptor 2 N-Terminal
Domain (1-217) Disease Mutant A77v
Length = 217
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 89 VLLKRLHHAAEIEKKQNESENKKLLGMVVQ--------YGSVVQLLHLKSNKFLTVNKRL 140
VL + L + E + Q + E K + Q YG + L H S +L
Sbjct: 77 VLQEMLANTVEKSEGQVDVEKWKFMMKTAQGGGHRTLLYGHAILLRHSYSGMYLCCLSTS 136
Query: 141 PALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGDNVVVGDKVIMNPVNAGQQVLHV 198
+ +K A V L D G E W+ I P K RS G+ V VGD +I+ V++ ++ LH+
Sbjct: 137 RSSTDKLAFDVGLQEDTTG-EACWWTIHPASKQRSEGEKVRVGDDLILVSVSS-ERYLHL 194
Query: 199 A 199
+
Sbjct: 195 S 195
>pdb|3QR5|A Chain A, Structure Of The First Domain Of A Cardiac Ryanodine
Receptor Mutant With Exon 3 Deleted
pdb|3QR5|B Chain B, Structure Of The First Domain Of A Cardiac Ryanodine
Receptor Mutant With Exon 3 Deleted
Length = 185
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L + +K A V L D G E W+ I P K RS G+
Sbjct: 83 YGHAILLRHSYSGMYLCCLSTSRSSTDKLAFDVGLQEDTTG-EACWWTIHPASKQRSEGE 141
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA 199
V VGD +I+ V++ ++ LH++
Sbjct: 142 KVRVGDDLILVSVSS-ERYLHLS 163
>pdb|3IM5|A Chain A, Crystal Structure Of Mouse Ryanodine Receptor 2 (Residues
1-217)
pdb|3IM5|B Chain B, Crystal Structure Of Mouse Ryanodine Receptor 2 (Residues
1-217)
Length = 217
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L + +K A V L D G E W+ I P K RS G+
Sbjct: 115 YGHAILLRHSYSGMYLCCLSTSRSSTDKLAFDVGLQEDTTG-EACWWTIHPASKQRSEGE 173
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA 199
V VGD +I+ V++ ++ LH++
Sbjct: 174 KVRVGDDLILVSVSS-ERYLHLS 195
>pdb|3IM6|A Chain A, Crystal Structure Of Mouse Ryanodine Receptor 2 Mutant
V186m
Length = 217
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 119 YGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL--DANGNEGSWFYILPFYKLRSTGD 176
YG + L H S +L + +K A V L D G E W+ I P K RS G+
Sbjct: 115 YGHAILLRHSYSGMYLCCLSTSRSSTDKLAFDVGLQEDTTG-EACWWTIHPASKQRSEGE 173
Query: 177 NVVVGDKVIMNPVNAGQQVLHVA 199
V VGD +I+ +++ ++ LH++
Sbjct: 174 KVRVGDDLILVSMSS-ERYLHLS 195
>pdb|4I96|A Chain A, Crystal Structure Of The N-terminal Two Domains Of The
Skeletal Muscle Ryanodine Receptor (rabbit Ryr1)
Residues 217-536
Length = 320
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 241 GDVVRLFHAEQEKFLTM---DEYKKKQHVFLXXXXXXXXXXXXXXKALWEIEVVQHDPCR 297
G V+RLFH ++ LT+ D +++ V+ ++LW +E ++
Sbjct: 1 GHVLRLFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHA-----RSLWRLEPLRIS-WS 54
Query: 298 GGAGHWNCLFRFKHLATGHYLAAEID 323
G W R +H+ TG YLA D
Sbjct: 55 GSHLRWGQPLRIRHVTTGRYLALTED 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,661,352
Number of Sequences: 62578
Number of extensions: 2822001
Number of successful extensions: 5987
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5935
Number of HSP's gapped (non-prelim): 34
length of query: 2693
length of database: 14,973,337
effective HSP length: 116
effective length of query: 2577
effective length of database: 7,714,289
effective search space: 19879722753
effective search space used: 19879722753
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)