Query psy827
Match_columns 2693
No_of_seqs 405 out of 626
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:06:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uj4_A Inositol 1,4,5-trisphos 100.0 1E-118 5E-123 1174.4 47.8 587 1-595 1-604 (604)
2 2xoa_A Ryanodine receptor 1; m 100.0 9.6E-83 3.3E-87 835.9 37.2 528 5-582 8-557 (559)
3 1n4k_A Inositol 1,4,5-trisphos 100.0 4.2E-64 1.4E-68 633.8 29.4 363 229-595 2-381 (381)
4 1xzz_A Inositol 1,4,5-trisphos 100.0 1.5E-50 5.3E-55 478.2 23.0 221 8-230 21-241 (246)
5 3im6_A Cardiac Ca2+ release ch 100.0 8.8E-34 3E-38 314.8 18.3 199 8-227 11-217 (217)
6 1t9f_A Protein 1D10; structura 99.8 5.8E-21 2E-25 218.8 12.6 142 173-323 2-148 (187)
7 3mal_A Stromal cell-derived fa 99.7 4.5E-18 1.5E-22 196.0 13.4 144 172-322 12-159 (199)
8 3mal_A Stromal cell-derived fa 99.3 1.3E-11 4.5E-16 142.4 15.8 165 113-290 14-188 (199)
9 1t9f_A Protein 1D10; structura 99.3 2.1E-11 7.3E-16 139.8 16.3 162 113-289 3-175 (187)
10 3uj4_A Inositol 1,4,5-trisphos 99.3 6.6E-11 2.3E-15 156.6 23.2 260 113-396 5-320 (604)
11 2xoa_A Ryanodine receptor 1; m 99.2 5.8E-10 2E-14 147.5 22.0 252 115-395 12-296 (559)
12 1n4k_A Inositol 1,4,5-trisphos 97.4 0.00037 1.3E-08 88.6 10.8 111 1233-1343 247-380 (381)
13 4f4l_A ION transport protein; 97.3 0.00017 5.8E-09 76.1 5.0 75 2428-2502 5-109 (112)
14 1xzz_A Inositol 1,4,5-trisphos 96.8 0.0069 2.4E-07 72.2 13.6 167 113-291 20-238 (246)
15 3rvy_A ION transport protein; 96.5 0.006 2.1E-07 74.7 10.5 99 2402-2500 121-249 (285)
16 4dxw_A Navrh, ION transport pr 96.5 0.0061 2.1E-07 72.2 9.6 89 2405-2494 109-227 (229)
17 2r9r_B Paddle chimera voltage 94.3 0.11 3.8E-06 68.7 10.9 111 2405-2517 319-456 (514)
18 3im6_A Cardiac Ca2+ release ch 93.8 0.1 3.5E-06 59.5 7.7 101 220-322 96-196 (217)
19 3beh_A MLL3241 protein; transm 78.2 5.7 0.0002 49.7 10.3 138 2405-2544 105-277 (355)
20 1xqr_A HSPBP1 protein; armadil 36.8 3.5E+02 0.012 32.8 15.0 115 497-635 75-198 (296)
21 2k1e_A Water soluble analogue 36.1 60 0.002 33.2 6.8 35 2461-2497 66-100 (103)
22 3pg0_A Threefoil; symmetric de 35.3 3.3E+02 0.011 29.6 13.3 64 241-322 73-138 (165)
23 3pg0_A Threefoil; symmetric de 31.6 2.5E+02 0.0084 30.6 11.4 115 240-395 25-139 (165)
24 1q1u_A FGF-12, fibrobast growt 30.5 55 0.0019 35.8 5.6 66 236-324 6-71 (144)
25 2p39_A Fibroblast growth facto 30.4 69 0.0024 35.5 6.4 63 240-324 12-76 (155)
26 3eff_K Voltage-gated potassium 29.7 1.2E+02 0.004 32.7 8.1 36 2461-2498 66-101 (139)
27 1xl4_A Inward rectifier potass 25.7 47 0.0016 40.7 4.5 48 2461-2515 108-155 (301)
28 1p7b_A Integral membrane chann 25.6 40 0.0014 41.9 3.9 88 2421-2515 55-169 (333)
29 3q7x_A De novo designed beta-t 22.5 1.5E+02 0.0053 31.8 7.2 75 279-394 33-107 (132)
30 3p6i_A De novo designed beta-t 22.3 1.8E+02 0.0062 31.7 7.7 73 279-392 68-140 (142)
31 3vou_A ION transport 2 domain 20.6 4.1E+02 0.014 28.7 10.4 75 2414-2490 10-105 (148)
32 3snv_A Symfoil-4T/permutation 20.5 2.4E+02 0.0083 30.7 8.3 76 278-394 35-110 (143)
No 1
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A*
Probab=100.00 E-value=1.3e-118 Score=1174.42 Aligned_cols=587 Identities=73% Similarity=1.149 Sum_probs=465.5
Q ss_pred CccccCCCCccccCCEEEEEecCccceEEEecCCCCCCeEEecCCCCCCCCCCccccceEEEecCcccHHHHHHHHHHHh
Q psy827 1 MNDMIGSASFLHLGDIVSLFAEGNVCGFLSTLGLVDDRTVVCPDAGDLANAPKKFRDCLFKICPMNRYSAQKQFWKAAKQ 80 (2693)
Q Consensus 1 ~~~~~~~~~~L~~GDiVsL~~e~~~~gflst~G~~~~~~~v~~~~g~~~n~p~~frdclFkI~P~~~y~Aqk~~~k~~k~ 80 (2693)
|.|+ ++++|||||||+||++|+++|||||+||+|++|+++|.+|++.|||+|||+|||+||||++|+|||+|||++|+
T Consensus 1 ~~~~--~~~~l~~gdiv~l~~~~~~~g~is~~g~~d~~~v~~~~~~~~~~~~~~fr~clF~i~p~~~y~aq~~~~k~~k~ 78 (604)
T 3uj4_A 1 MSDK--MSSFLHIGDIASLYAEGSTNGFISTLGLVDDRAVVQPEAGDLNNPPKKFRDALFKLAPMNRYSAQKQFWKAAKP 78 (604)
T ss_dssp --------CBCBTTCEEEEEEESSSCEEEEESCSSCCBEEECTTTCBTTBCCTTGGGGEEEEECCCCCHHHHHHHHTC--
T ss_pred CCcc--ccCccccccEEEEEEcCCcceEEeeccccccceEEeccCCcccCCCcchhcCeEEECCCcchhHHHHHHHHHhc
Confidence 5564 49999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccCCcchHHHHHHHHHHHHHhhhhcHHHHHHhcCcEeeeccEEEEeecCCCceEEEcCccchhhccCceEEEeecCCCcc
Q psy827 81 SASSTTDAVLLKRLHHAAEIEKKQNESENKKLLGMVVQYGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYLDANGNEG 160 (2693)
Q Consensus 81 ~~~~~~~~~~l~~Lq~~ae~E~~~N~~e~~k~~G~~V~YG~~IQL~Hv~S~kyLt~~~~~~a~~Ek~a~~V~L~~~~se~ 160 (2693)
+.++.++.++|++|+++|+.|.++|+.+++|++|++|+||++|||+|+.|+|||+|+++.+|..|++||+|+|+++++++
T Consensus 79 ~~~~~~~~~~l~~L~~~~~~E~~qN~~~~~k~~g~~V~YGs~IqL~H~~S~kyL~~~~~~~a~~e~~~~~V~L~~~~~e~ 158 (604)
T 3uj4_A 79 GANSTTDAVLLNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLHLKSNKYLTVNKRLPALLEKNAMRVTLDEAGNEG 158 (604)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHTTTTCBCBTTCEEEEEETTTTEEEEEEEEEECSSSTTCEEEEEESSCCGG
T ss_pred cccccchHHHHHHHHHHHHhHhhhcHHHHHHhcCCeEEeCCeEEEEEcccCcEEEEcCCCcccccCCceEEEEEecCCCC
Confidence 66667777899999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred eEEEEecCcccccCCCeEeeCCEEEEEEccCCCceeeeeccccCCCCCCceeEEeecCCceeEEEEcccccccccCcccc
Q psy827 161 SWFYILPFYKLRSTGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQEEILKG 240 (2693)
Q Consensus 161 s~F~I~P~~K~r~eGd~V~~gD~ViL~~v~~~~~~LH~s~~~~~p~~~~~~EVn~sd~~T~WkI~l~~~~~~~~~~~Lk~ 240 (2693)
|||+|+|+||+|++||+|++||.|+|+|++++ .||| ||.+.||++++++|||++|.+|.|+|.++..+.+...++|++
T Consensus 159 s~F~I~P~~k~~~eGe~V~~Gd~V~L~~~~tg-~~LH-Sh~~~yp~gS~qQqVt~~D~Nn~W~I~~~~~~~~~~~~~Vk~ 236 (604)
T 3uj4_A 159 SWFYIQPFYKLRSIGDSVVIGDKVVLNPVNAG-QPLH-ASSHQLVDNPGANEVNSVNANTSWKIVLFMKWSDNKDDILKG 236 (604)
T ss_dssp GCEEEEESSTTSCTTSBCBTTCEEEEEESSSC-SCEE-EEEEECSSSTTCEEEEESSCCCEEEEEEEECGGGCCTTBCBT
T ss_pred eEEEEecCcccccCCCeEeeCCEEEEEEcCCC-CcEE-eecccCCCCCCceEEEEEcCCCeEEEEecCCCCcccCccccc
Confidence 99999999999999999999999999999984 6699 999999999999999999999999999998887767789999
Q ss_pred CCEEEEEecCCCccccccccccccceeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCcceee
Q psy827 241 GDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHYLAA 320 (2693)
Q Consensus 241 GDVIRLfH~E~~~~Lt~~~~~~~~~v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~YLa~ 320 (2693)
||+|||+|++|++|||+|+...+.+.+.+++++......++++++|+||+++.++++|+.+.|++.|||||++|||||++
T Consensus 237 GDvIRL~H~~T~~~LhSH~~~~P~~~~~eVs~yg~~~~~gd~ndlW~IEi~~~~~~~G~~~~~~s~fRLrH~~Tg~YL~s 316 (604)
T 3uj4_A 237 GDVVRLFHAEQEKFLTADEHRKKQHVFLRTTGRQSATSATSSKALWEVEVVQHDPARGGAGYWNSLFRFKHLATGHYLAA 316 (604)
T ss_dssp TCEEEEEETTTTEEEEEEEETTEEEEEEECCC--CTTCCCCGGGEEEEEECCSSTTCCCBCBTTCEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCCCCeecCCCCCCCcceEEEeecccccCCCCCCCeEEEEEecCCcCCCCeEEecCeEEEEEcccCceeee
Confidence 99999999999999999999888887777887766557899999999999977778999999999999999999999999
Q ss_pred eecCc-------------hhhhhhhcccccCCCceeEEEEecCCCCCCCcccccCcccccccCccccCCCeEEEEEcccC
Q psy827 321 EIDTD-------------ETMDQMRSKLRDHHGGSVYHLVSVPHPNEISSLFELDPTTLTRADSLVPQSSYVRLHHLCTN 387 (2693)
Q Consensus 321 ~~~~~-------------~~~~~~~~~~~~~~~~~~f~L~~~~~~~~~~s~F~L~~~~~~~~d~~V~~~SyvrIqH~~T~ 387 (2693)
+.++. .+....+++.++..+...|.|++++++++++++|+|+|+++++++++|+++|||||+|++||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lv~~~~~~~~~slF~l~~~~~~~~~~~v~~~Syvrl~h~~t~ 396 (604)
T 3uj4_A 317 EVDPDFEEEALEFQPSVDPDQDASRSRLRNAQEKMVYSLVSVPEGNDISSIFELDPTTLRGGDSLVPRNSYVRLRHLATN 396 (604)
T ss_dssp EEC--------------------------------CEEEEEESCSCSGGGCEEEEESSCCSSCSBCBTTCEEEEEETTTT
T ss_pred ccCcccccccccccccccccccccccccccCCCceeEEEEeccCCCCcccEEEEeccccccccccccCCCEEEEEEcccC
Confidence 87631 12233455566666667899999999999999999999999999999999999999999999
Q ss_pred ceEEeeccccCCCCCCcc----ccCCccccccceEEeecChhhhhhhHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHH
Q psy827 388 TWVHSTSIPIDKDEEKPV----GCAPLKEDKEAFALIPVSPTEVRDLDFANDACKVLAANSSKLENGSISQNERRAVTSL 463 (2693)
Q Consensus 388 ~WL~~~~~~id~~e~~~v----~~~~~k~d~daF~i~~v~~~Evrd~~f~~s~~~vL~~~~~~l~~~~i~~~~~~~v~~~ 463 (2693)
+|||+++.++++++++|+ |+++.++|++||+|++|+.+||||++|+++|+|+|+.++++++.|.+++++++.++++
T Consensus 397 ~Wv~~~~~~~~~~~~~p~~~~~~~~~~k~d~~aF~i~~v~~~ev~d~~f~~~~~~~L~~~~~~l~~~~i~~~~~~~~~~~ 476 (604)
T 3uj4_A 397 TWVHSTNIPIDKEEEKPVMLKIGTSPLKEDKEAFAIVPVSPAEVRDLDFANDASKVLGSIAGKLEKGTITQNERRSVTKL 476 (604)
T ss_dssp EEEEEEEEESCSSSSSCCEEEEEEESSCC--CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred ceEccccccccccccchhHhhhccccccchhheEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHH
Confidence 999999999999988886 6778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCcccccchhhhhhhhcCCCChHHHHHHHhhchHHHHHHHhcccccccccCCCCcccccccCCCCCCcHHHH
Q psy827 464 LQDIVYFIAGLENEQNKSEALELSVVNPNRDRQKLLREQYILKQLFKILQAPFLEIVEGEGPFLRIEELNDPKNAPYKYM 543 (2693)
Q Consensus 464 L~dLi~F~~~~e~~~n~~~~L~~~~~~pnr~RQkLLREq~iL~lL~~iL~~pF~~~~~~~~~~l~~~el~d~~~~~~k~i 543 (2693)
|+||++||.+. .++..++|++.+|+|||+|||||||||||++|++||++||++. ++++++.++++.+++++.+++|
T Consensus 477 L~dl~~F~~~~--~n~~~~~l~~~~g~pnr~RQKLlREQ~il~~l~~iL~~~f~~~--~~~~~~~l~~l~~~~~~~~~~i 552 (604)
T 3uj4_A 477 LEDLVYFVTGG--TNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDA--GDGPMLRLEELGDQRHAPFRHI 552 (604)
T ss_dssp HHHHHHHCC-----------------CCCHHHHHHHHHTTHHHHHHHHTC----------------------------CH
T ss_pred HHHHHHHHhCc--CcCccchhhcccCCcCHHHHHHHHhhhHHHHHHHHHhcccCCc--CccchhhHHhhhcccchHHHHH
Confidence 99999999987 4677899999999999999999999999999999999999975 6789999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhccHH
Q psy827 544 FRLCYRILRLSQQDYRKNQEYIAKHFGFMQKQIGYDILAEDTITALLHNNRK 595 (2693)
Q Consensus 544 ~~l~Y~LL~~~~~~NrkNq~yiak~i~~~q~QIgy~~~AedtIteLl~nN~~ 595 (2693)
|++||++|+.+|++||+||+|+|+||++||+||||+++|+||||+|||||++
T Consensus 553 ~~l~Y~~L~~~~~~~rkNQeyiak~~~~~q~qigy~~~a~dtit~ll~nN~k 604 (604)
T 3uj4_A 553 ARLAYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYDVLAEDTITALLHNNRK 604 (604)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhCccchHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999985
No 2
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}
Probab=100.00 E-value=9.6e-83 Score=835.94 Aligned_cols=528 Identities=19% Similarity=0.264 Sum_probs=376.1
Q ss_pred cCCCCccccCCEEEEEecCc-----cceEEEecCCCCCCeEEecCCCCCCCCCCccccceEEEecCcccHHHHHHHHHHH
Q psy827 5 IGSASFLHLGDIVSLFAEGN-----VCGFLSTLGLVDDRTVVCPDAGDLANAPKKFRDCLFKICPMNRYSAQKQFWKAAK 79 (2693)
Q Consensus 5 ~~~~~~L~~GDiVsL~~e~~-----~~gflst~G~~~~~~~v~~~~g~~~n~p~~frdclFkI~P~~~y~Aqk~~~k~~k 79 (2693)
...+++||+||+|+|+|+++ ..+||+|+||++++|++++.++. .++||+|++|||+|+|+.+++|.+
T Consensus 8 ~~~~~~L~~GdiV~l~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~~~~~clF~i~~~~s~~~l~------- 79 (559)
T 2xoa_A 8 EDEVQFLRTDDEVVLQCSATVLKEQLKLCLAAEGFGNRLCFLEPTSNA-QNVPPDLAICCFTLEQSLSVRALQ------- 79 (559)
T ss_dssp ----CBCBTTCEEEEEEEEECSSSEEEEEEECCBTTBCBCEEEECTTT-TTSCCCCGGGCEEEEEEECHHHHH-------
T ss_pred ccccccccCCCEEEEEeccccccccceEEEEecCccCCceEEeccccc-cCCCCcccceEEEEEehhhHHHHH-------
Confidence 34589999999999999986 56999999999999999998654 789999999999999887655433
Q ss_pred hccCCcchHHHHHHHHHHHHHhhhhcHHHHHHhcCcEeeeccEEEEeecCCCceEEEcCccchhhccCceEEEee-cCCC
Q psy827 80 QSASSTTDAVLLKRLHHAAEIEKKQNESENKKLLGMVVQYGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYLD-ANGN 158 (2693)
Q Consensus 80 ~~~~~~~~~~~l~~Lq~~ae~E~~~N~~e~~k~~G~~V~YG~~IQL~Hv~S~kyLt~~~~~~a~~Ek~a~~V~L~-~~~s 158 (2693)
+.+..|.++|..+.++..|++|+||++|||+|++|+|||+|+++++|..|++||+|+|+ +.++
T Consensus 80 ----------------e~l~~e~~~~~~~~~~~~~~~v~yG~~iqL~H~~S~~~L~~~~~~~s~~ek~a~~V~L~~~~~~ 143 (559)
T 2xoa_A 80 ----------------EMLANTVEAGVESSQGGGHRTLLYGHAILLRHAHSRMYLSCLTTSRSMTDKLAFDVGLQEDATG 143 (559)
T ss_dssp ----------------HHHTC------------CCCBCBTTCEEEEEETTTCCEEEECSCCC----CCCEEEEEESSCCS
T ss_pred ----------------HHHHHHHHhhhhhhhccCCCcEEEeeEEEEeecccCeEEEEcCcCcccccccceEEEEEecCCC
Confidence 34444566666666677899999999999999999999999999989999999999998 6899
Q ss_pred cceEEEEecCcccccCCCeEeeCCEEEEEEccCCCceeeeeccccCCCCCCceeEEeecCCceeEEEEcccccccccCcc
Q psy827 159 EGSWFYILPFYKLRSTGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVVNSSTSWKVTLFMEHRENQEEIL 238 (2693)
Q Consensus 159 e~s~F~I~P~~K~r~eGd~V~~gD~ViL~~v~~~~~~LH~s~~~~~p~~~~~~EVn~sd~~T~WkI~l~~~~~~~~~~~L 238 (2693)
++|||+|+|+||+|++||+|++||+|+|+|++++ .|||.|+ + ++.+||++++++|.|+|.+|+.+.+ .++|
T Consensus 144 ~~s~f~I~p~~k~r~~G~~V~~Gd~V~L~~~~t~-~~LH~S~---~---~gs~eVt~~d~nt~W~I~~~~~~~~--~~~l 214 (559)
T 2xoa_A 144 EACWWTMHPASKQRSEGEKVRVGDDLILVSVSSE-RYLHLST---A---SGELQVDASFMQTLWNMNPICSCCE--EGYV 214 (559)
T ss_dssp STTEEEEEESSTTSCTTSBCBTTCEEEEEETTTC-CEEEEEC----------CEEEEESSCCCEEEEEEECCCC--TTBC
T ss_pred CCcEEEEEcCccccCCCCccccCCEEEEEECCCC-CcccccC---C---CCCeEEEeccCCCeEEEEEcccCCc--cccc
Confidence 9999999999999999999999999999999885 6699655 3 4577999999999999999988755 6899
Q ss_pred ccCCEEEEEecCCCccccccccccccceeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCcce
Q psy827 239 KGGDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHYL 318 (2693)
Q Consensus 239 k~GDVIRLfH~E~~~~Lt~~~~~~~~~v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~YL 318 (2693)
++||||||+|+++++|||++....+.. .+++.|..+...++++++|+||+++.. ++|+.++|++.|||||++|||||
T Consensus 215 ~~GDvIRL~H~~t~~~L~~~~~~s~~~--~ev~~y~~~~~~~d~~~~W~VE~v~~~-~~G~~~~~~~~fRLrH~~TG~YL 291 (559)
T 2xoa_A 215 TGGHVLRLFHGHMDECLTISAADSDDQ--RRLVYYEGGAVCTHARSLWRLEPLRIS-WSGSHLRWGQPLRIRHVTTGRYL 291 (559)
T ss_dssp BTTCEEEEECC---CEEEECCTTCTTT--TCBEEEECGGGGGSGGGCEEEEESCST-TTTSBCCTTCCEEEEETTTCCEE
T ss_pred cCCCEEEEEecCCCceeeccCCCcccc--eEEEeecCCCcCCCCCceEEEEEeccc-cCCCceEeCCeEEEEECCcCCee
Confidence 999999999999999999887542111 123444444567899999999999764 99999999999999999999999
Q ss_pred eeeecCchhhhhhhcccccCCCceeEEEEecCCCCCCCcccccCcccccccCccccCCCeEEEEEcccCceEEeecc---
Q psy827 319 AAEIDTDETMDQMRSKLRDHHGGSVYHLVSVPHPNEISSLFELDPTTLTRADSLVPQSSYVRLHHLCTNTWVHSTSI--- 395 (2693)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~~~~f~L~~~~~~~~~~s~F~L~~~~~~~~d~~V~~~SyvrIqH~~T~~WL~~~~~--- 395 (2693)
+++.+.+. ............+.|+|++.++..+... +.++ +....+.++.+||||||||++||+|||+++.
T Consensus 292 ~~~~~~~~---~~~~~~~~~~~~s~F~f~~~~~~~~~~~--~~d~-~~~~~~~i~~~ds~vrl~H~~T~~WL~~~~~~~~ 365 (559)
T 2xoa_A 292 ALTEDQGL---VVVDACKAHTKATSFCFRVSKEKLDTAP--KRDV-EGMGPPEIKYGESLCFVQHVASGLWLTYAAPDPK 365 (559)
T ss_dssp EEETTTEE---EEECGGGCCHHHHCEEEESSSSCC------CCCC-SSSCCCCCBTTTCCBEEEETTTCCEEEECC----
T ss_pred eEcCCCCc---ccccccccCCCccEEEEeecCCcccccc--cccc-ccccCceEeecCceEEEEEecCCCeEeecccccc
Confidence 99865321 1111112234467899999876554332 3444 3344567788999999999999999999874
Q ss_pred --ccCCCCCCccccCCccccccceEEeecChhhhhhhHHHHHHHHHHHHHHHhhhcCCC----------ChhhHHHHHHH
Q psy827 396 --PIDKDEEKPVGCAPLKEDKEAFALIPVSPTEVRDLDFANDACKVLAANSSKLENGSI----------SQNERRAVTSL 463 (2693)
Q Consensus 396 --~id~~e~~~v~~~~~k~d~daF~i~~v~~~Evrd~~f~~s~~~vL~~~~~~l~~~~i----------~~~~~~~v~~~ 463 (2693)
+++..+.+|+ +.+...++|||+|.+|+.+|+|+++|+.+|+|+|.+|+++|+..+. ...+++.++++
T Consensus 366 ~~~i~~~~~~~v-l~~~g~~~d~F~i~~~~~~e~~e~~~i~~~~~~l~~fi~~L~~~~~~~~~~~~~~~~~~~~~~v~~~ 444 (559)
T 2xoa_A 366 ALRLGVLKKKAI-LHQEGHMDDALFLTRCQQEESQAARMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALPIEAVILS 444 (559)
T ss_dssp -----CCEEEEE-EESSCCTTCCBEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCC---------CCHHHHHHH
T ss_pred ccccCccceeee-eeeccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccHHHHHHH
Confidence 6777777776 3355577899999999999999999999999999999999886532 23456789999
Q ss_pred HHHHHhhhcCcccccchhhhhhhhcCCCChHHHHHHHhhchHHHHHHHhcccccccccCCCCcccccccCC-CCCCcHHH
Q psy827 464 LQDIVYFIAGLENEQNKSEALELSVVNPNRDRQKLLREQYILKQLFKILQAPFLEIVEGEGPFLRIEELND-PKNAPYKY 542 (2693)
Q Consensus 464 L~dLi~F~~~~e~~~n~~~~L~~~~~~pnr~RQkLLREq~iL~lL~~iL~~pF~~~~~~~~~~l~~~el~d-~~~~~~k~ 542 (2693)
|+||++||.+.+. +......+..+.|+|+|||||||||||++|+++|. +|.. ..+..++ .++.. +..+.|+.
T Consensus 445 L~dLi~F~~~~~~--~~~~~~~q~~~~~~r~RQkLlrEq~il~ll~~il~-~l~~-~~~~~~~---~~~~~~~~~~~~~~ 517 (559)
T 2xoa_A 445 LQDLIGYFEPPSE--ELQHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCID-RLNV-YTTAAHF---AEYAGEEAAESWKE 517 (559)
T ss_dssp HHHHHHHTCCC-----------CCHHHHHHHHHHHHHHTTHHHHHHHHHH-HHTT-SCC---------CCCSTGGGTHHH
T ss_pred HHHHHHHhcCccc--cccchhccccccccHHHHHHHhhhchHHHHHHHHH-Hhhc-cCchhhH---HHhhcchhHHHHHH
Confidence 9999999998742 22222223334599999999999999999999996 3321 1122222 23333 33488999
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhcCchhh
Q psy827 543 MFRLCYRILRLSQQDYRKNQEYIAKHFGFMQKQIGYDILA 582 (2693)
Q Consensus 543 i~~l~Y~LL~~~~~~NrkNq~yiak~i~~~q~QIgy~~~A 582 (2693)
|+++||+||+++|++|++||+|+|++|+||++|+|....+
T Consensus 518 i~~~~Y~LL~~~i~~N~~N~~y~~~~l~~l~~~l~~~~~~ 557 (559)
T 2xoa_A 518 IVNLLYELLASLIRGNRANCALFSTNLDWVVSKLDRLEAS 557 (559)
T ss_dssp HHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999965444
No 3
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1
Probab=100.00 E-value=4.2e-64 Score=633.75 Aligned_cols=363 Identities=73% Similarity=1.151 Sum_probs=272.9
Q ss_pred cccccccCccccCCEEEEEecCCCccccccccccccceeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCCCCcccccee
Q psy827 229 EHRENQEEILKGGDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGGAGHWNCLFR 308 (2693)
Q Consensus 229 ~~~~~~~~~Lk~GDVIRLfH~E~~~~Lt~~~~~~~~~v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fR 308 (2693)
.|.+...++|++||||||+|++|++|||+|++.++..++++++++++.+..++++++|+||+++.++++|++++|++.||
T Consensus 2 ~~~~~~~~~v~~GdvIRL~H~~t~~~Lhs~~~~~~~~v~~~~s~~~s~~~~~d~~s~W~IE~~~~~~~~G~~~~~~~~fR 81 (381)
T 1n4k_A 2 KWSDNKDDILKGGDVVRLFHAEQEKFLTCDEHRKKQHVFLRTTGRQSATSATSSKALWEVEVVQHDPCRGGAGYWNSLFR 81 (381)
T ss_dssp -----------CCCEEEEEETTTTEEEEEEECSSSEEEEEECCCSSSGGGCCCGGGCEEEEECC-------------CEE
T ss_pred CcccccCCcccCCcEEEEEEcccCCeeecCCCCCccceeeeccCccCCCCCCCCCCeEEEEEeccCCCCCCceeeCCeEE
Confidence 35556678999999999999999999999998876777777777776556899999999999976789999999999999
Q ss_pred EEEccCCcceeeeecCchhh-------------hhhhcccccCCCceeEEEEecCCCCCCCcccccCcccccccCccccC
Q psy827 309 FKHLATGHYLAAEIDTDETM-------------DQMRSKLRDHHGGSVYHLVSVPHPNEISSLFELDPTTLTRADSLVPQ 375 (2693)
Q Consensus 309 LKHl~TG~YLa~~~~~~~~~-------------~~~~~~~~~~~~~~~f~L~~~~~~~~~~s~F~L~~~~~~~~d~~V~~ 375 (2693)
|||++|||||+++.+.+... +..++..++....+.|+|++++++.+++++|+|+|++++++|+.|++
T Consensus 82 LrH~~Tg~yL~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~f~l~~~~~~~d~~s~f~l~~~~~~~~d~~v~~ 161 (381)
T 1n4k_A 82 FKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASRSRLRNAQEKMVYSLVSVPEGNDISSIFELDPTTLRGGDSLVPR 161 (381)
T ss_dssp EEETTTCCEEEEEEC-------------------------------CCEEEEEESCSCSGGGCEEEEC------------
T ss_pred EEECCCCceeeEEecCcccccccccccccccccccccccccCCCcCceEEEEecCccCCchhhhccCccccccccccccc
Confidence 99999999999987643111 11222333334578999999999999999999999999999999999
Q ss_pred CCeEEEEEcccCceEEeeccccCCCCCCcc----ccCCccccccceEEeecChhhhhhhHHHHHHHHHHHHHHHhhhcCC
Q psy827 376 SSYVRLHHLCTNTWVHSTSIPIDKDEEKPV----GCAPLKEDKEAFALIPVSPTEVRDLDFANDACKVLAANSSKLENGS 451 (2693)
Q Consensus 376 ~SyvrIqH~~T~~WL~~~~~~id~~e~~~v----~~~~~k~d~daF~i~~v~~~Evrd~~f~~s~~~vL~~~~~~l~~~~ 451 (2693)
+|||||||++||+|||+++.++++++++|+ ++++.+++++||+|++|+.+||||++|+++|+|+|.+|++.+++|.
T Consensus 162 ~Sy~rl~H~~t~~Wl~~~~~~~~~~~~~~~l~~l~~~~~~e~~~aF~I~~v~~~ev~d~~f~~~~~~~l~~f~~~l~~~~ 241 (381)
T 1n4k_A 162 NSYVRLRHLCTNTWVHSTNIPIDKEEEKPVMLKIGTSPLKEDKEAFAIVPVSPAEVRDLDFANDASKVLGSIAGKLEKGT 241 (381)
T ss_dssp --CBEEEEGGGTEEEEEEEEESCCSSSSCCEEEEEEESSCCSSCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CceEEEEEcccCceEEeeccccCcccccceeeeeeeccceeeccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999888888886 6778999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhhcCcccccchhhhhhhhcCCCChHHHHHHHhhchHHHHHHHhcccccccccCCCCcccccc
Q psy827 452 ISQNERRAVTSLLQDIVYFIAGLENEQNKSEALELSVVNPNRDRQKLLREQYILKQLFKILQAPFLEIVEGEGPFLRIEE 531 (2693)
Q Consensus 452 i~~~~~~~v~~~L~dLi~F~~~~e~~~n~~~~L~~~~~~pnr~RQkLLREq~iL~lL~~iL~~pF~~~~~~~~~~l~~~e 531 (2693)
++.++++.++++|+||++||.+.+ .+.+++|++.+|+|+++|||||||||||++|+++|++||++ .+.++++.+++
T Consensus 242 i~~~~~~~v~~~L~dLi~F~~~~~--~~~~~~l~~~~g~p~r~RQkLlrEq~il~ll~~iL~~~f~~--~~~~~~~~~~~ 317 (381)
T 1n4k_A 242 ITQNERRSVTKLLEDLVYFVTGGT--NSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTD--CGDGPMLRLEE 317 (381)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTS--CCSSCSGGGGGCCCCHHHHHHHHHTTHHHHHHHHHHGGGC--------------
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcc--hhcccchhhhcCCccHHHHHHHHhhChHHHHHHHHHhhccc--cCccchhhHHH
Confidence 999999999999999999999884 35678899999999999999999999999999999999986 34567788889
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhcCchhhHHHHHHHHhccHH
Q psy827 532 LNDPKNAPYKYMFRLCYRILRLSQQDYRKNQEYIAKHFGFMQKQIGYDILAEDTITALLHNNRK 595 (2693)
Q Consensus 532 l~d~~~~~~k~i~~l~Y~LL~~~~~~NrkNq~yiak~i~~~q~QIgy~~~AedtIteLl~nN~~ 595 (2693)
+.+++++.|+.||++||+||+++|++||+||+|+|+||++||.||||++.|+|||++||+||++
T Consensus 318 l~~~~~~~~~~i~~l~Y~LL~~~~~~~r~Nq~y~ak~~~~~q~qig~~~~a~d~i~~ll~nN~k 381 (381)
T 1n4k_A 318 LGDQRHAPFRHICRLCYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYDVLAEDTITALLHNNRK 381 (381)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHTTC--
T ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 4
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3 receptor suppressor domain, calcium channe trefoil fold, membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A
Probab=100.00 E-value=1.5e-50 Score=478.23 Aligned_cols=221 Identities=77% Similarity=1.238 Sum_probs=205.3
Q ss_pred CCccccCCEEEEEecCccceEEEecCCCCCCeEEecCCCCCCCCCCccccceEEEecCcccHHHHHHHHHHHhccCCcch
Q psy827 8 ASFLHLGDIVSLFAEGNVCGFLSTLGLVDDRTVVCPDAGDLANAPKKFRDCLFKICPMNRYSAQKQFWKAAKQSASSTTD 87 (2693)
Q Consensus 8 ~~~L~~GDiVsL~~e~~~~gflst~G~~~~~~~v~~~~g~~~n~p~~frdclFkI~P~~~y~Aqk~~~k~~k~~~~~~~~ 87 (2693)
.++|||||+|+||++++.+||+|++||+|++|++++.++++.|||++||+|||+|||+++|+|||+|||+.+...++..+
T Consensus 21 ~~~L~~GdiVsL~~~~~~~gfls~~G~~d~~cv~~~~~~~l~~~p~~f~~clF~I~P~~~y~aqk~~~k~~k~~~~~~~d 100 (246)
T 1xzz_A 21 SSFLHIGDICSLYAEGSTNGFISTLGLVDDRCVVQPEAGDLNNPPKKFRDCLFKLCPMNRYSAQKQFWKAAKPGANSTTD 100 (246)
T ss_dssp -CBCBTTCEEEEEEESSSCEEEEESCSSCCBEEECGGGCCSSSCCSCGGGGCEEEECCCCCHHHHHHHHC------CCCC
T ss_pred ccCcccCCEEEEEEcCCCCceEeeccccCCceeeeccccccccCCcchhheeEEEeCCcchHHHHHHHHHhhccccchhh
Confidence 78999999999999998899999999999999999999999999999999999999999999999999998766666677
Q ss_pred HHHHHHHHHHHHHhhhhcHHHHHHhcCcEeeeccEEEEeecCCCceEEEcCccchhhccCceEEEeecCCCcceEEEEec
Q psy827 88 AVLLKRLHHAAEIEKKQNESENKKLLGMVVQYGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYLDANGNEGSWFYILP 167 (2693)
Q Consensus 88 ~~~l~~Lq~~ae~E~~~N~~e~~k~~G~~V~YG~~IQL~Hv~S~kyLt~~~~~~a~~Ek~a~~V~L~~~~se~s~F~I~P 167 (2693)
..++++|+++++.|.++|..+++|++|++|+||++|||+|+.|+|||||+++++|..|++||+|+|++++|++|||+|+|
T Consensus 101 ~~~l~~L~~~~~~E~~qN~~~~~k~~g~~v~YG~~iqLlHv~S~kyLt~~~~~~a~~ek~a~~v~L~~~~se~s~F~I~P 180 (246)
T 1xzz_A 101 AVLLNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLHLKSNKYLTVNKRLPALLEKNAMRVTLDEAGNEGSWFYIQP 180 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCBCBTTCEEEEEETTTTEEEEEEEEEECSSSTTSEEEEEESSCCGGGCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCeEEeccEEEEEEcCCCcEEEEcCcCchhhcccceEEEEecCCCCceEEEEee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCeEeeCCEEEEEEccCCCceeeeeccccCCCCCCceeEEeecCCceeEEEEcccc
Q psy827 168 FYKLRSTGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVVNSSTSWKVTLFMEH 230 (2693)
Q Consensus 168 ~~K~r~eGd~V~~gD~ViL~~v~~~~~~LH~s~~~~~p~~~~~~EVn~sd~~T~WkI~l~~~~ 230 (2693)
+||+|++||+|++||+|+|+|+++ ++||| ++..++++.+++.|||+++++|.|+|.+|.++
T Consensus 181 ~~k~r~eGd~V~~gD~V~l~~~~~-~~~Lh-~S~~~l~d~~~~~eVn~~~~~T~Wki~l~~~~ 241 (246)
T 1xzz_A 181 FYKLRSIGDSVVIGDKVVLNPVNA-GQPLH-ASSHQLVDNPGCNEVNSVNCNTSWKIVLFLEH 241 (246)
T ss_dssp SSTTSCTTSBCBTTCEEEEEESSS-CSCEE-EEEEECSSSSSCEEEEESSCCCEEEEEEEECT
T ss_pred ceeecccCCceEECCEEEEEECCC-CCccc-ccccccCCCCCCcEEEeecCCceeEEeehhhc
Confidence 999999999999999999999985 56699 55577899999999999999999999999764
No 5
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2, disease mutation; 1.70A {Mus musculus} PDB: 3im5_A 3im7_A 3qr5_A 3ila_A 3hsm_A
Probab=100.00 E-value=8.8e-34 Score=314.75 Aligned_cols=199 Identities=19% Similarity=0.281 Sum_probs=150.8
Q ss_pred CCccccCCEEEEEecCc-----cceEEEecCCCCCCeEEecCCCCCCCCCCccccceEEEecCcccHHHHHHHHHHHhcc
Q psy827 8 ASFLHLGDIVSLFAEGN-----VCGFLSTLGLVDDRTVVCPDAGDLANAPKKFRDCLFKICPMNRYSAQKQFWKAAKQSA 82 (2693)
Q Consensus 8 ~~~L~~GDiVsL~~e~~-----~~gflst~G~~~~~~~v~~~~g~~~n~p~~frdclFkI~P~~~y~Aqk~~~k~~k~~~ 82 (2693)
.+|||.||.|.|.|..+ .+.|++++||+++.|+++|.+.. +|+||++..|+|.+....+.+|.++.+.......
T Consensus 11 ~~flrt~d~v~l~c~~~~~~~~~k~claaegfGnRlC~le~~~~~-~~~pp~~~~c~f~~~~~lsvralqe~~~~~~~~~ 89 (217)
T 3im6_A 11 IQFLRTDDEVVLQCTATIHKEQQKLCLAAEGFGNRLCFLESTSNS-KNVPPDLSICTFVLEQSLSVRALQEMLANTVEKS 89 (217)
T ss_dssp -CBCBTTCEEEEECCCEETTEEC-CEEECCSSSCCBCEEECCC-----CCSCGGGSCEEEEEEECHHHHHHHHHHTCC--
T ss_pred eEEeecCCeEEEEEeecCccCcceEEEeeccccCceEEeeccccc-cCCCCCcceeeeeehhhhhHHHHHHHHhcCcccc
Confidence 67999999999999764 36999999999999999999875 7899999999999999999999999887643221
Q ss_pred CCcchHHHHHHHHHHHHHhhhhcHHHHHHhcCcEeeeccEEEEeecCCCceEEEcCccchhhccCceEEEe---ecCCCc
Q psy827 83 SSTTDAVLLKRLHHAAEIEKKQNESENKKLLGMVVQYGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYL---DANGNE 159 (2693)
Q Consensus 83 ~~~~~~~~l~~Lq~~ae~E~~~N~~e~~k~~G~~V~YG~~IQL~Hv~S~kyLt~~~~~~a~~Ek~a~~V~L---~~~~se 159 (2693)
.++.+ +.+.+. =...-....+.+|+|||+|||+|++|+|||||+++++| |+++|+|.| ++.+||
T Consensus 90 ~~~~~---~~~~~~--------~~~~~~~~~~r~v~YGq~IQLlH~~SnkyLtv~~~~~s--ek~~lrv~LgL~d~~~se 156 (217)
T 3im6_A 90 EGQVD---VEKWKF--------MMKTAQGGGHRTLLYGHAILLRHSYSGMYLCCLSTSRS--STDKLAFDVGLQEDTTGE 156 (217)
T ss_dssp -------------------------------CCBCBTTCEEEEEETTTCCEEEECSCC--------CCEEEEEESCCSSS
T ss_pred cCccc---cccccc--------ccccccCCCCceEEeccEEEeeecccCcEEEEcCCCcc--cccCcEEEEEeccCCCCc
Confidence 11111 111110 00111234678999999999999999999999999888 666666666 788899
Q ss_pred ceEEEEecCcccccCCCeEeeCCEEEEEEccCCCceeeeeccccCCCCCCceeEEeecCCceeEEEEc
Q psy827 160 GSWFYILPFYKLRSTGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVVNSSTSWKVTLF 227 (2693)
Q Consensus 160 ~s~F~I~P~~K~r~eGd~V~~gD~ViL~~v~~~~~~LH~s~~~~~p~~~~~~EVn~sd~~T~WkI~l~ 227 (2693)
+|||+|+|+||+|++||+|+.||+|+|+++++ ++|||+|+. +++.|||+++++|.|+|.++
T Consensus 157 ~swF~I~P~yK~RseGd~V~~GD~ViL~sv~s-~~yLH~S~~------~g~~eVn~s~~~T~W~i~p~ 217 (217)
T 3im6_A 157 ACWWTIHPASKQRSEGEKVRVGDDLILVSMSS-ERYLHLSYG------NSSWHVDAAFQQTLWSVAPI 217 (217)
T ss_dssp TTEEEEEESSSCCCTTCBCBTTCEEEEEETTT-CCEEEEEEC------SSSEEEEEESSCCCEEEEEC
T ss_pred ceEEEEEccEeeccCCCceeeCCEEEEEECCC-CceEEeecC------CCceEEeeecCCceeEEeeC
Confidence 99999999999999999999999999999988 466997643 68999999999999999874
No 6
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1
Probab=99.84 E-value=5.8e-21 Score=218.78 Aligned_cols=142 Identities=20% Similarity=0.311 Sum_probs=121.3
Q ss_pred cCCCeEeeCCEEEEEEccCCCceeeeeccccCCCCCCceeEEee----cCCceeEEEEcccccccccCccccCCEEEEEe
Q psy827 173 STGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVV----NSSTSWKVTLFMEHRENQEEILKGGDVVRLFH 248 (2693)
Q Consensus 173 ~eGd~V~~gD~ViL~~v~~~~~~LH~s~~~~~p~~~~~~EVn~s----d~~T~WkI~l~~~~~~~~~~~Lk~GDVIRLfH 248 (2693)
++|+.|.+||.|+|+|++++ .||| ||...||.+++++||++. |.++.|.|.++.........+|++||+|||+|
T Consensus 2 s~~~~V~~Gs~I~L~h~~t~-~~LH-SH~~~y~~gs~qQqVT~y~~~~D~nn~W~I~~~~~~~~~~~~~v~~Gd~IRL~H 79 (187)
T 1t9f_A 2 SDEDFVTCYSVLKFINANDG-SRLH-SHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNAKCNRGDAIKCGDKIRLKH 79 (187)
T ss_dssp CTTCBCBTTCEEEEEETTTC-CEEE-EEEEECSSSSCCEEEEEESCSSCGGGCEEEEECTTCCCCTTCBCCTTCEEEEEE
T ss_pred CCCCEEEeCCEEEEEECCCC-cccE-eCCccCCCCCCceEEEEECCCCCCCCEEEEEecCCCccCCCCEeccCCEEEEEE
Confidence 68999999999999999886 6799 999999999999999996 77999999998876655678999999999999
Q ss_pred cCCCccccccccccccc-eeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCcceeeeec
Q psy827 249 AEQEKFLTMDEYKKKQH-VFLRTTGRTSATSATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHYLAAEID 323 (2693)
Q Consensus 249 ~E~~~~Lt~~~~~~~~~-v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~YLa~~~~ 323 (2693)
..|++||++|++..+.. ...+++.+. ....++++++|+||++ |+.++|++.|||||+.|||||++...
T Consensus 80 ~~T~~~Lhsh~~~~p~s~~~~EVs~~g-~~~~gd~~d~W~vei~------~~~~~~~~~fRL~H~~tg~yL~~~~~ 148 (187)
T 1t9f_A 80 LTTGTFLHSHHFTAPLSKQHQEVSAFG-SEAESDTGDDWTVICN------GDEWLESEQFKLRHAVTGSYLSLSGQ 148 (187)
T ss_dssp TTTCCEEEEEEEECSSCTTSEEEEEEC-CTTTCCGGGCEEEECS------SSSCBTTSEEEEEETTTCCEEEEEEE
T ss_pred CCCCCCEeECCcCCCCCCCceEEEEec-ccCCCCCCCeEEEEEc------CCEEecCCeEEEEECCcCeEEecCCc
Confidence 99999999999876644 234555543 3456899999999964 56778999999999999999999753
No 7
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0
Probab=99.74 E-value=4.5e-18 Score=196.02 Aligned_cols=144 Identities=18% Similarity=0.259 Sum_probs=118.7
Q ss_pred ccCCCeEeeCCEEEEEEccCCCceeeeeccccCCCCCCceeEEee----cCCceeEEEEcccccccccCccccCCEEEEE
Q psy827 172 RSTGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVV----NSSTSWKVTLFMEHRENQEEILKGGDVVRLF 247 (2693)
Q Consensus 172 r~eGd~V~~gD~ViL~~v~~~~~~LH~s~~~~~p~~~~~~EVn~s----d~~T~WkI~l~~~~~~~~~~~Lk~GDVIRLf 247 (2693)
..+|+.|.+||.|+|+|++++ .+|| ||...||.+++++||++. |.|+.|.|.++..........|+.||+|||.
T Consensus 12 ~~~~~~V~~Gs~VtL~h~~t~-~~LH-SH~~~yp~gS~qQqVT~y~~~~D~Nn~W~I~~~~~~~~~~~~~v~~gd~IRL~ 89 (199)
T 3mal_A 12 GKEGVEITYGSAIKLMHEKTK-FRLH-SHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQ 89 (199)
T ss_dssp ----CBCBTTCEEEEEETTTC-CEEE-EEEEECSSTTCCEEEEEECCSCCGGGCEEEECCTTSSCCTTSBCBTTCEEEEE
T ss_pred CCCCCEEeeCCEEEEEECCCC-Ccce-eCCccCCCCCCCEEEEeeCCCCCCCCEEEEEecCcCCcCCCcEeecCCEEEEE
Confidence 468899999999999999886 5799 999999999999999994 4688999998776555556789999999999
Q ss_pred ecCCCccccccccccccceeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCcceeeee
Q psy827 248 HAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHYLAAEI 322 (2693)
Q Consensus 248 H~E~~~~Lt~~~~~~~~~v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~YLa~~~ 322 (2693)
|..|++||++|++..+.....+++.+.. ...+++++.|+||.++ .|..+.+++.|||||+.|||||+++.
T Consensus 90 H~~T~~~LhSH~~~~P~s~~~EVs~~~~-~~~~D~~d~W~Vei~~----~~~~~~~~~~fRL~H~~T~~yL~sh~ 159 (199)
T 3mal_A 90 HMKTRKWLHSHLHASPISGNLEVSCFGD-DTNSDTGDHWKLIIEG----SGKTWKQDQRVRLQHIDTSGYLHSHD 159 (199)
T ss_dssp ETTTCCEEEEEEEECTTTCSEEEEEECB-TTBCCGGGCEEEEESS----SCCBCBTTCEEEEEETTTCCEEEEEE
T ss_pred ECCCCCCEeECCcCCCCCCCeEEEEecc-CCCCCCCCeEEEEEcC----CCCEEEcCCeEEEEECCCCeEEeeCC
Confidence 9999999999998776554555655543 2368999999999863 36678899999999999999999964
No 8
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0
Probab=99.31 E-value=1.3e-11 Score=142.41 Aligned_cols=165 Identities=19% Similarity=0.264 Sum_probs=124.9
Q ss_pred cCcEeeeccEEEEeecCCCceEEEcCccchhhccCceEEEeecC-CCcceEEEEecCccc-ccCCCeEeeCCEEEEEEcc
Q psy827 113 LGMVVQYGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYLDAN-GNEGSWFYILPFYKL-RSTGDNVVVGDKVIMNPVN 190 (2693)
Q Consensus 113 ~G~~V~YG~~IQL~Hv~S~kyLt~~~~~~a~~Ek~a~~V~L~~~-~se~s~F~I~P~~K~-r~eGd~V~~gD~ViL~~v~ 190 (2693)
-|..|.||++|.|+|+.++.||....-... ..+....|+.-.. .+++.||.|.|.... ...|+.|..||.|.|+|+.
T Consensus 14 ~~~~V~~Gs~VtL~h~~t~~~LHSH~~~yp-~gS~qQqVT~y~~~~D~Nn~W~I~~~~~~~~~~~~~v~~gd~IRL~H~~ 92 (199)
T 3mal_A 14 EGVEITYGSAIKLMHEKTKFRLHSHDVPYG-SGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQGDAVKSGATIRLQHMK 92 (199)
T ss_dssp --CBCBTTCEEEEEETTTCCEEEEEEEECS-STTCCEEEEEECCSCCGGGCEEEECCTTSSCCTTSBCBTTCEEEEEETT
T ss_pred CCCEEeeCCEEEEEECCCCCcceeCCccCC-CCCCCEEEEeeCCCCCCCCEEEEEecCcCCcCCCcEeecCCEEEEEECC
Confidence 578999999999999999999987653211 3456688999766 567899999987642 3568999999999999998
Q ss_pred CCCceeeeeccccCCCCCCceeEEee------cCCceeEEEEcccccccccCccccCCEEEEEecCCCccccccccccc-
Q psy827 191 AGQQVLHVAANYELPDNPGCKEVNVV------NSSTSWKVTLFMEHRENQEEILKGGDVVRLFHAEQEKFLTMDEYKKK- 263 (2693)
Q Consensus 191 ~~~~~LH~s~~~~~p~~~~~~EVn~s------d~~T~WkI~l~~~~~~~~~~~Lk~GDVIRLfH~E~~~~Lt~~~~~~~- 263 (2693)
++ .||| ||...+|. ++.+||+|. |.++.|+|.+... ....+.++.+||.|..|+.||.+++..=+
T Consensus 93 T~-~~Lh-SH~~~~P~-s~~~EVs~~~~~~~~D~~d~W~Vei~~~-----~~~~~~~~~fRL~H~~T~~yL~sh~~~lp~ 164 (199)
T 3mal_A 93 TR-KWLH-SHLHASPI-SGNLEVSCFGDDTNSDTGDHWKLIIEGS-----GKTWKQDQRVRLQHIDTSGYLHSHDKKYQR 164 (199)
T ss_dssp TC-CEEE-EEEEECTT-TCSEEEEEECBTTBCCGGGCEEEEESSS-----CCBCBTTCEEEEEETTTCCEEEEEEEECCS
T ss_pred CC-CCEe-ECCcCCCC-CCCeEEEEeccCCCCCCCCeEEEEEcCC-----CCEEEcCCeEEEEECCCCeEEeeCCCCCCC
Confidence 75 5599 88888887 478999983 5678999987432 34567899999999999999999875322
Q ss_pred -cceeEEeeccCCCCCCCCCCCcEEEEE
Q psy827 264 -QHVFLRTTGRTSATSATSSKALWEIEV 290 (2693)
Q Consensus 264 -~~v~lr~~~~~~~~~~~s~~slW~IE~ 290 (2693)
.....++++.. ..+.+++|.||-
T Consensus 165 wg~~Q~EV~~~~----~~~~~~~W~vee 188 (199)
T 3mal_A 165 IAGGQQEVCGIR----EKKADNIWLAAE 188 (199)
T ss_dssp SSTTCEEEEEES----SCCGGGCEEEEE
T ss_pred CCCcceEEEeeC----CCCCCCeEEeCc
Confidence 22233343332 246788999984
No 9
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1
Probab=99.30 E-value=2.1e-11 Score=139.79 Aligned_cols=162 Identities=19% Similarity=0.284 Sum_probs=124.3
Q ss_pred cCcEeeeccEEEEeecCCCceEEEcCcc-chhhccCceEEEeecCC-CcceEEEEecCccc-ccCCCeEeeCCEEEEEEc
Q psy827 113 LGMVVQYGSVVQLLHLKSNKFLTVNKRL-PALLEKNAMRVYLDANG-NEGSWFYILPFYKL-RSTGDNVVVGDKVIMNPV 189 (2693)
Q Consensus 113 ~G~~V~YG~~IQL~Hv~S~kyLt~~~~~-~a~~Ek~a~~V~L~~~~-se~s~F~I~P~~K~-r~eGd~V~~gD~ViL~~v 189 (2693)
.|..|.||+.|.|+|+.|++||....-. ++ .+....|+.-... +++++|.|.|..+. ...|+.|.-||.|.|.|+
T Consensus 3 ~~~~V~~Gs~I~L~h~~t~~~LHSH~~~y~~--gs~qQqVT~y~~~~D~nn~W~I~~~~~~~~~~~~~v~~Gd~IRL~H~ 80 (187)
T 1t9f_A 3 DEDFVTCYSVLKFINANDGSRLHSHDVKYGS--GSGQQSVTAVKNSDDINSHWQIFPALNAKCNRGDAIKCGDKIRLKHL 80 (187)
T ss_dssp TTCBCBTTCEEEEEETTTCCEEEEEEEECSS--SSCCEEEEEESCSSCGGGCEEEEECTTCCCCTTCBCCTTCEEEEEET
T ss_pred CCCEEEeCCEEEEEECCCCcccEeCCccCCC--CCCceEEEEECCCCCCCCEEEEEecCCCccCCCCEeccCCEEEEEEC
Confidence 4778999999999999999999875421 22 3566789997665 77999999998764 456999999999999999
Q ss_pred cCCCceeeeeccccCCCCCCceeEEee------cCCceeEEEEcccccccccCccccCCEEEEEecCCCccccccccccc
Q psy827 190 NAGQQVLHVAANYELPDNPGCKEVNVV------NSSTSWKVTLFMEHRENQEEILKGGDVVRLFHAEQEKFLTMDEYKKK 263 (2693)
Q Consensus 190 ~~~~~~LH~s~~~~~p~~~~~~EVn~s------d~~T~WkI~l~~~~~~~~~~~Lk~GDVIRLfH~E~~~~Lt~~~~~~~ 263 (2693)
.++. +|| +|....|..++.+||++. +.++.|+|.+. ...++-++.+||.|..++.||++++..-+
T Consensus 81 ~T~~-~Lh-sh~~~~p~s~~~~EVs~~g~~~~gd~~d~W~vei~-------~~~~~~~~~fRL~H~~tg~yL~~~~~~lp 151 (187)
T 1t9f_A 81 TTGT-FLH-SHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVICN-------GDEWLESEQFKLRHAVTGSYLSLSGQQFG 151 (187)
T ss_dssp TTCC-EEE-EEEEECSSCTTSEEEEEECCTTTCCGGGCEEEECS-------SSSCBTTSEEEEEETTTCCEEEEEEEECC
T ss_pred CCCC-CEe-ECCcCCCCCCCceEEEEecccCCCCCCCeEEEEEc-------CCEEecCCeEEEEECCcCeEEecCCcccC
Confidence 8765 499 777766766678999983 44678999864 23567899999999999999999875422
Q ss_pred --cceeEEeeccCCCCCCCCCCCcEEEE
Q psy827 264 --QHVFLRTTGRTSATSATSSKALWEIE 289 (2693)
Q Consensus 264 --~~v~lr~~~~~~~~~~~s~~slW~IE 289 (2693)
.....++++... .+.+++|.||
T Consensus 152 ~w~~~Q~EV~~~~~----~~~~~~W~ve 175 (187)
T 1t9f_A 152 RPIHGQREVVGTDS----ITGGSAWKVA 175 (187)
T ss_dssp TTSTTCEEEEEESS----CCTTCCEEEE
T ss_pred CCCCCceEEEEecC----CCCCCEEEEC
Confidence 223344444321 3678999999
No 10
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A*
Probab=99.30 E-value=6.6e-11 Score=156.56 Aligned_cols=260 Identities=14% Similarity=0.174 Sum_probs=170.6
Q ss_pred cCcEeeeccEEEEeecCC-CceEEEcCccchhhccCceEEE-----eecCC--CcceEEEEecCccc-------------
Q psy827 113 LGMVVQYGSVVQLLHLKS-NKFLTVNKRLPALLEKNAMRVY-----LDANG--NEGSWFYILPFYKL------------- 171 (2693)
Q Consensus 113 ~G~~V~YG~~IQL~Hv~S-~kyLt~~~~~~a~~Ek~a~~V~-----L~~~~--se~s~F~I~P~~K~------------- 171 (2693)
+.+.+.||+.|-|+=-.+ +.||+-..- ++. .--|. |+..+ -..|.|+|.|..+|
T Consensus 5 ~~~~l~~gdiv~l~~~~~~~g~is~~g~----~d~-~~v~~~~~~~~~~~~~~fr~clF~i~p~~~y~aq~~~~k~~k~~ 79 (604)
T 3uj4_A 5 MSSFLHIGDIASLYAEGSTNGFISTLGL----VDD-RAVVQPEAGDLNNPPKKFRDALFKLAPMNRYSAQKQFWKAAKPG 79 (604)
T ss_dssp --CBCBTTCEEEEEEESSSCEEEEESCS----SCC-BEEECTTTCBTTBCCTTGGGGEEEEECCCCCHHHHHHHHTC---
T ss_pred ccCccccccEEEEEEcCCcceEEeeccc----ccc-ceEEeccCCcccCCCcchhcCeEEECCCcchhHHHHHHHHHhcc
Confidence 457899999999986666 577765442 122 11122 22222 36899999996542
Q ss_pred -----------------------------ccCCCeEeeCCEEEEEEccCCCceeeeeccccCCCCCCceeEEee---cCC
Q psy827 172 -----------------------------RSTGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVV---NSS 219 (2693)
Q Consensus 172 -----------------------------r~eGd~V~~gD~ViL~~v~~~~~~LH~s~~~~~p~~~~~~EVn~s---d~~ 219 (2693)
+..|.+|.||+.|.|.|++++. ||++........++++..|.+. +.+
T Consensus 80 ~~~~~~~~~l~~L~~~~~~E~~qN~~~~~k~~g~~V~YGs~IqL~H~~S~k-yL~~~~~~~a~~e~~~~~V~L~~~~~e~ 158 (604)
T 3uj4_A 80 ANSTTDAVLLNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLHLKSNK-YLTVNKRLPALLEKNAMRVTLDEAGNEG 158 (604)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTTTTCBCBTTCEEEEEETTTTE-EEEEEEEEECSSSTTCEEEEEESSCCGG
T ss_pred ccccchHHHHHHHHHHHHhHhhhcHHHHHHhcCCeEEeCCeEEEEEcccCc-EEEEcCCCcccccCCceEEEEEecCCCC
Confidence 1234689999999999997754 4885443334446778889885 478
Q ss_pred ceeEEEEcccccccccCccccCCEEEEEecCCCccccccccccc-cceeEEeeccCCCCCCCCCCCcEEEEEeec-CCCC
Q psy827 220 TSWKVTLFMEHRENQEEILKGGDVVRLFHAEQEKFLTMDEYKKK-QHVFLRTTGRTSATSATSSKALWEIEVVQH-DPCR 297 (2693)
Q Consensus 220 T~WkI~l~~~~~~~~~~~Lk~GDVIRLfH~E~~~~Lt~~~~~~~-~~v~lr~~~~~~~~~~~s~~slW~IE~v~~-~~~~ 297 (2693)
+.|+|.|...+.. .+..|..||.|.|.|..++.|||+|...-+ ......++ ..+.+..|.|+.... .+..
T Consensus 159 s~F~I~P~~k~~~-eGe~V~~Gd~V~L~~~~tg~~LHSh~~~yp~gS~qQqVt-------~~D~Nn~W~I~~~~~~~~~~ 230 (604)
T 3uj4_A 159 SWFYIQPFYKLRS-IGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGANEVN-------SVNANTSWKIVLFMKWSDNK 230 (604)
T ss_dssp GCEEEEESSTTSC-TTSBCBTTCEEEEEESSSCSCEEEEEEECSSSTTCEEEE-------ESSCCCEEEEEEEECGGGCC
T ss_pred eEEEEecCccccc-CCCeEeeCCEEEEEEcCCCCcEEeecccCCCCCCceEEE-------EEcCCCeEEEEecCCCCccc
Confidence 8999998865543 355799999999999999999999874322 11122233 247899999997543 2235
Q ss_pred CCCCccccceeEEEccCCcceeeeecCchhhhhhhcccccCCCceeEEEEecCCCCCCCcccccCccccc-ccCccccCC
Q psy827 298 GGAGHWNCLFRFKHLATGHYLAAEIDTDETMDQMRSKLRDHHGGSVYHLVSVPHPNEISSLFELDPTTLT-RADSLVPQS 376 (2693)
Q Consensus 298 Gg~v~w~~~fRLKHl~TG~YLa~~~~~~~~~~~~~~~~~~~~~~~~f~L~~~~~~~~~~s~F~L~~~~~~-~~d~~V~~~ 376 (2693)
|+.++-++.+||+|..||+||.++....+. +...+.+.|. ......+..+.+.+.+.... ..+..++.+
T Consensus 231 ~~~Vk~GDvIRL~H~~T~~~LhSH~~~~P~--------~~~~eVs~yg--~~~~~gd~ndlW~IEi~~~~~~~G~~~~~~ 300 (604)
T 3uj4_A 231 DDILKGGDVVRLFHAEQEKFLTADEHRKKQ--------HVFLRTTGRQ--SATSATSSKALWEVEVVQHDPARGGAGYWN 300 (604)
T ss_dssp TTBCBTTCEEEEEETTTTEEEEEEEETTEE--------EEEEECCC----CTTCCCCGGGEEEEEECCSSTTCCCBCBTT
T ss_pred CcccccCCEEEEEECCCCCCeecCCCCCCC--------cceEEEeecc--cccCCCCCCCeEEEEEecCCcCCCCeEEec
Confidence 778999999999999999999998643210 0000000010 00112344555555432211 234578889
Q ss_pred CeEEEEEcccCceEEeeccc
Q psy827 377 SYVRLHHLCTNTWVHSTSIP 396 (2693)
Q Consensus 377 SyvrIqH~~T~~WL~~~~~~ 396 (2693)
+-|||+|+.||.+|+++..+
T Consensus 301 s~fRLrH~~Tg~YL~s~~~~ 320 (604)
T 3uj4_A 301 SLFRFKHLATGHYLAAEVDP 320 (604)
T ss_dssp CEEEEEETTTCCEEEEEEC-
T ss_pred CeEEEEEcccCceeeeccCc
Confidence 99999999999999988653
No 11
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}
Probab=99.17 E-value=5.8e-10 Score=147.46 Aligned_cols=252 Identities=13% Similarity=0.170 Sum_probs=153.8
Q ss_pred cEeeeccEEEEeecCC-----CceEEEcCccchhhccCceEEEee-----cCCCcceEEEEecCcc--------------
Q psy827 115 MVVQYGSVVQLLHLKS-----NKFLTVNKRLPALLEKNAMRVYLD-----ANGNEGSWFYILPFYK-------------- 170 (2693)
Q Consensus 115 ~~V~YG~~IQL~Hv~S-----~kyLt~~~~~~a~~Ek~a~~V~L~-----~~~se~s~F~I~P~~K-------------- 170 (2693)
..+.||+.|-|.+..+ +++. +.. ....+..++--... +..-..|.|+|.|+..
T Consensus 12 ~~L~~GdiV~l~~~~~~~~~~~~~~-l~~--~G~~~~~~~~~~~~~~~~~~~~~~~clF~i~~~~s~~~l~e~l~~e~~~ 88 (559)
T 2xoa_A 12 QFLRTDDEVVLQCSATVLKEQLKLC-LAA--EGFGNRLCFLEPTSNAQNVPPDLAICCFTLEQSLSVRALQEMLANTVEA 88 (559)
T ss_dssp CBCBTTCEEEEEEEEECSSSEEEEE-EEC--CBTTBCBCEEEECTTTTTSCCCCGGGCEEEEEEECHHHHHHHHTC----
T ss_pred ccccCCCEEEEEeccccccccceEE-EEe--cCccCCceEEeccccccCCCCcccceEEEEEehhhHHHHHHHHHHHHHh
Confidence 4788999999998887 2222 221 12233444332211 2223789999999432
Q ss_pred -----cccCCCeEeeCCEEEEEEccCCCceeeeeccccCCCCCCceeEEee----cCCceeEEEEcccccccccCccccC
Q psy827 171 -----LRSTGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVV----NSSTSWKVTLFMEHRENQEEILKGG 241 (2693)
Q Consensus 171 -----~r~eGd~V~~gD~ViL~~v~~~~~~LH~s~~~~~p~~~~~~EVn~s----d~~T~WkI~l~~~~~~~~~~~Lk~G 241 (2693)
....|.+|.||..|.|.|++++.+ ||+.+...-......+.|++. +.++.|+|.|...+.. .+..+..|
T Consensus 89 ~~~~~~~~~~~~v~yG~~iqL~H~~S~~~-L~~~~~~~s~~ek~a~~V~L~~~~~~~~s~f~I~p~~k~r~-~G~~V~~G 166 (559)
T 2xoa_A 89 GVESSQGGGHRTLLYGHAILLRHAHSRMY-LSCLTTSRSMTDKLAFDVGLQEDATGEACWWTMHPASKQRS-EGEKVRVG 166 (559)
T ss_dssp --------CCCBCBTTCEEEEEETTTCCE-EEECSCCC----CCCEEEEEESSCCSSTTEEEEEESSTTSC-TTSBCBTT
T ss_pred hhhhhhccCCCcEEEeeEEEEeecccCeE-EEEcCcCcccccccceEEEEEecCCCCCcEEEEEcCccccC-CCCccccC
Confidence 233478999999999999987654 894332211112334678875 5688999999875443 35568899
Q ss_pred CEEEEEecCCCccccccccccccceeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCcceeee
Q psy827 242 DVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHYLAAE 321 (2693)
Q Consensus 242 DVIRLfH~E~~~~Lt~~~~~~~~~v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~YLa~~ 321 (2693)
|.|+|.|..+++|||+..+.+.. .++ ..+.+..|.|+..... ...+.++-++.+||.|..||+||++.
T Consensus 167 d~V~L~~~~t~~~LH~S~~~gs~----eVt-------~~d~nt~W~I~~~~~~-~~~~~l~~GDvIRL~H~~t~~~L~~~ 234 (559)
T 2xoa_A 167 DDLILVSVSSERYLHLSTASGEL----QVD-------ASFMQTLWNMNPICSC-CEEGYVTGGHVLRLFHGHMDECLTIS 234 (559)
T ss_dssp CEEEEEETTTCCEEEEEC----C----EEE-------EESSCCCEEEEEEECC-CCTTBCBTTCEEEEECC---CEEEEC
T ss_pred CEEEEEECCCCCcccccCCCCCe----EEE-------eccCCCeEEEEEcccC-CccccccCCCEEEEEecCCCceeecc
Confidence 99999999999999943333211 122 2367889999975432 23667888999999999999999975
Q ss_pred ecCchhhhhhhcccccCCCceeEEEEecCCCCCCCcccccCcccccccCccccCCCeEEEEEcccCceEEeecc
Q psy827 322 IDTDETMDQMRSKLRDHHGGSVYHLVSVPHPNEISSLFELDPTTLTRADSLVPQSSYVRLHHLCTNTWVHSTSI 395 (2693)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~f~L~~~~~~~~~~s~F~L~~~~~~~~d~~V~~~SyvrIqH~~T~~WL~~~~~ 395 (2693)
.... ........|. ....+.+..+++.+...........+.-++-+||+|+.||.||+++..
T Consensus 235 ~~~s----------~~~~ev~~y~--~~~~~~d~~~~W~VE~v~~~~~G~~~~~~~~fRLrH~~TG~YL~~~~~ 296 (559)
T 2xoa_A 235 AADS----------DDQRRLVYYE--GGAVCTHARSLWRLEPLRISWSGSHLRWGQPLRIRHVTTGRYLALTED 296 (559)
T ss_dssp CTTC----------TTTTCBEEEE--CGGGGGSGGGCEEEEESCSTTTTSBCCTTCCEEEEETTTCCEEEEETT
T ss_pred CCCc----------ccceEEEeec--CCCcCCCCCceEEEEEeccccCCCceEeCCeEEEEECCcCCeeeEcCC
Confidence 4310 0011111121 111222334444443222213345667788899999999999998854
No 12
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1
Probab=97.39 E-value=0.00037 Score=88.57 Aligned_cols=111 Identities=16% Similarity=0.317 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhhhcccCCCC-C-----CCCCchhhhhHHHhhcchhhhhhhccCccCc--------------hhhhHH
Q psy827 1233 YKKIQQILIRMNKLCISRATPL-S-----PVKPRKHEQRLLRNVGVHTIVLDLLQVPYDM--------------KEDIRM 1292 (2693)
Q Consensus 1233 y~~~~~~l~~~~~~c~~~~~~~-~-----~~k~~~~~Q~llrn~g~h~~vl~ll~~~~~~--------------~~d~~m 1292 (2693)
.+.+.+.|.++...|....... + ..+|.+.+|+|||..|+...|+++|..|+.. ......
T Consensus 247 ~~~v~~~L~dLi~F~~~~~~~~~~~l~~~~g~p~r~RQkLlrEq~il~ll~~iL~~~f~~~~~~~~~~~~~l~~~~~~~~ 326 (381)
T 1n4k_A 247 RRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDCGDGPMLRLEELGDQRHAPF 326 (381)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSGGGGGCCCCHHHHHHHHHTTHHHHHHHHHHGGGC-----------------CHHH
T ss_pred HHHHHHHHHHHHHHhcCcchhcccchhhhcCCccHHHHHHHHhhChHHHHHHHHHhhccccCccchhhHHHhcchhhhHH
Confidence 4567788888888886543110 1 2368889999999999999999999877422 122345
Q ss_pred HHHHHHHHHHHHHHhccChhhHHHHHHhhhhhhc---cCchHHHHHHHHhhccH
Q psy827 1293 NELMRLAHQFLQNFCLGNQQNQVLLHKHLDLFLN---PGIREAQTVCSVFQDNS 1343 (2693)
Q Consensus 1293 ~el~~~~~~fL~~Fc~~N~~NQ~lL~~~l~~fl~---~~i~e~~~l~~If~~N~ 1343 (2693)
.+++.+|+++|+..|.+|+.||.-+.+|+.+|.. +.++..++|.+|+.||+
T Consensus 327 ~~i~~l~Y~LL~~~~~~~r~Nq~y~ak~~~~~q~qig~~~~a~d~i~~ll~nN~ 380 (381)
T 1n4k_A 327 RHICRLCYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYDVLAEDTITALLHNNR 380 (381)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHhcCC
Confidence 7899999999999999999999999999998863 45677889999999996
No 13
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=97.28 E-value=0.00017 Score=76.07 Aligned_cols=75 Identities=19% Similarity=0.395 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccc-------------------ccc-----------cchhhhhhhHHHHHHHHH
Q psy827 2428 SIILTAVLALILVYMFSIIGYMFFKDDFL-------------------EPL-----------FVARVIYDLLFFFIVIII 2477 (2693)
Q Consensus 2428 ~l~lt~~L~~i~~y~fsii~~~~f~~~f~-------------------~~~-----------~~~r~~~d~~f~~~v~ii 2477 (2693)
.+...++|.++++|+||++|...|.+.+. +.| ..+-.+|=.+|.++...+
T Consensus 5 g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi 84 (112)
T 4f4l_A 5 GVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFT 84 (112)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 35556788889999999999999876542 111 112245667788888889
Q ss_pred HHHHHHHhhhccccccHHHHHHHHH
Q psy827 2478 VLNLIFGVIIDTFADLRSEKQQKEL 2502 (2693)
Q Consensus 2478 ~lnii~GiIiDtF~~lR~~~~~~~~ 2502 (2693)
++|++.|||+|+|++.|+++++.++
T Consensus 85 ~lNLfiaVi~~~f~~~~~~~~~~~~ 109 (112)
T 4f4l_A 85 VLNLFIGIIVDAMAITKEQEEEAKT 109 (112)
T ss_dssp HHHHHTTTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776554
No 14
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3 receptor suppressor domain, calcium channe trefoil fold, membrane protein; 1.80A {Mus musculus} PDB: 3jrr_A
Probab=96.84 E-value=0.0069 Score=72.22 Aligned_cols=167 Identities=14% Similarity=0.198 Sum_probs=102.0
Q ss_pred cCcEeeeccEEEEeecCC-CceEEEcCccchhhccCceEEE----eec--CCCcceEEEEecCccc--------------
Q psy827 113 LGMVVQYGSVVQLLHLKS-NKFLTVNKRLPALLEKNAMRVY----LDA--NGNEGSWFYILPFYKL-------------- 171 (2693)
Q Consensus 113 ~G~~V~YG~~IQL~Hv~S-~kyLt~~~~~~a~~Ek~a~~V~----L~~--~~se~s~F~I~P~~K~-------------- 171 (2693)
+.+.+.||+.|-|.=-.+ +-||+... ..++.++--. |+. ..-..|.|+|.|..++
T Consensus 20 ~~~~L~~GdiVsL~~~~~~~gfls~~G----~~d~~cv~~~~~~~l~~~p~~f~~clF~I~P~~~y~aqk~~~k~~k~~~ 95 (246)
T 1xzz_A 20 MSSFLHIGDICSLYAEGSTNGFISTLG----LVDDRCVVQPEAGDLNNPPKKFRDCLFKLCPMNRYSAQKQFWKAAKPGA 95 (246)
T ss_dssp --CBCBTTCEEEEEEESSSCEEEEESC----SSCCBEEECGGGCCSSSCCSCGGGGCEEEECCCCCHHHHHHHHC-----
T ss_pred hccCcccCCEEEEEEcCCCCceEeecc----ccCCceeeeccccccccCCcchhheeEEEeCCcchHHHHHHHHHhhccc
Confidence 467999999999974333 24665531 1222221110 111 1236899999998772
Q ss_pred ----------------------------ccCCCeEeeCCEEEEEEccCCCceeeeeccccCCCCCCceeEEe---ecCCc
Q psy827 172 ----------------------------RSTGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNV---VNSST 220 (2693)
Q Consensus 172 ----------------------------r~eGd~V~~gD~ViL~~v~~~~~~LH~s~~~~~p~~~~~~EVn~---sd~~T 220 (2693)
+.-|.+|.||..|-|.|+.++.+ |-+.....-........|.. .+..+
T Consensus 96 ~~~~d~~~l~~L~~~~~~E~~qN~~~~~k~~g~~v~YG~~iqLlHv~S~ky-Lt~~~~~~a~~ek~a~~v~L~~~~se~s 174 (246)
T 1xzz_A 96 NSTTDAVLLNKLHHAADLEKKQNETENRKLLGTVIQYGNVIQLLHLKSNKY-LTVNKRLPALLEKNAMRVTLDEAGNEGS 174 (246)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCBCBTTCEEEEEETTTTEE-EEEEEEEECSSSTTSEEEEEESSCCGGG
T ss_pred cchhhHHHHHHHHHHHHHHHhhCHHHHHhcCCCeEEeccEEEEEEcCCCcE-EEEcCcCchhhcccceEEEEecCCCCce
Confidence 13478999999999999987654 55433211111234466665 35678
Q ss_pred eeEEEEcccccccccCccccCCEEEEEecCCCccccccccccccceeEEeeccCCCCCCCCCCCcEEEEEe
Q psy827 221 SWKVTLFMEHRENQEEILKGGDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVV 291 (2693)
Q Consensus 221 ~WkI~l~~~~~~~~~~~Lk~GDVIRLfH~E~~~~Lt~~~~~~~~~v~lr~~~~~~~~~~~s~~slW~IE~v 291 (2693)
.|+|.|+..+..+. ..+..||.|.|.+..++.|||+....-+.......+ .....++.|.|-..
T Consensus 175 ~F~I~P~~k~r~eG-d~V~~gD~V~l~~~~~~~~Lh~S~~~l~d~~~~~eV------n~~~~~T~Wki~l~ 238 (246)
T 1xzz_A 175 WFYIQPFYKLRSIG-DSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGCNEV------NSVNCNTSWKIVLF 238 (246)
T ss_dssp CEEEEESSTTSCTT-SBCBTTCEEEEEESSSCSCEEEEEEECSSSSSCEEE------EESSCCCEEEEEEE
T ss_pred EEEEeeceeecccC-CceEECCEEEEEECCCCCcccccccccCCCCCCcEE------EeecCCceeEEeeh
Confidence 99999988776543 445669999999999999999753211111000011 13456779999865
No 15
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=96.52 E-value=0.006 Score=74.68 Aligned_cols=99 Identities=18% Similarity=0.397 Sum_probs=69.1
Q ss_pred HhhHHHhhcchHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhccccccc-----------------cccch-h
Q psy827 2402 SVLLLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKDDFLE-----------------PLFVA-R 2463 (2693)
Q Consensus 2402 ~~~L~di~~r~~~L~nvi~sv~~n~~~l~lt~~L~~i~~y~fsii~~~~f~~~f~~-----------------~~~~~-r 2463 (2693)
.+-++-++...+.++.+++++.+..+.++..+++.++++|+||++|+..|.+.+.+ ...|+ -
T Consensus 121 ilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~d 200 (285)
T 3rvy_A 121 VLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMG 200 (285)
T ss_dssp GGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHHhCCCcHH
Confidence 34455666778999999999999999999999999999999999999988764321 00011 1
Q ss_pred h------------hhhhHHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Q psy827 2464 V------------IYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQQK 2500 (2693)
Q Consensus 2464 ~------------~~d~~f~~~v~ii~lnii~GiIiDtF~~lR~~~~~~ 2500 (2693)
+ .|=.+|.++..++++|++.|+|+|.|.+-++++++.
T Consensus 201 i~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~~~~ 249 (285)
T 3rvy_A 201 IVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQH 249 (285)
T ss_dssp CHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 233466677788999999999999999987766544
No 16
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=96.45 E-value=0.0061 Score=72.20 Aligned_cols=89 Identities=20% Similarity=0.489 Sum_probs=70.3
Q ss_pred HHHhhcchHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccc-------------------cc-------
Q psy827 2405 LLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKDDFL-------------------EP------- 2458 (2693)
Q Consensus 2405 L~di~~r~~~L~nvi~sv~~n~~~l~lt~~L~~i~~y~fsii~~~~f~~~f~-------------------~~------- 2458 (2693)
++-++.+.|.++.+++++.+..+++...+++.++++|+||++|+..|.+... ++
T Consensus 109 ~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~ 188 (229)
T 4dxw_A 109 VLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLP 188 (229)
T ss_dssp HTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHHHH
Confidence 3445566899999999999999999999999999999999999999976432 11
Q ss_pred ----ccchhhhhhhHHHHHHHHHHHHHHHHhhhccccccH
Q psy827 2459 ----LFVARVIYDLLFFFIVIIIVLNLIFGVIIDTFADLR 2494 (2693)
Q Consensus 2459 ----~~~~r~~~d~~f~~~v~ii~lnii~GiIiDtF~~lR 2494 (2693)
..++. +|=.+|.++...+++|++.|+|+|+|++-+
T Consensus 189 ~~~~~~~~~-~~f~~~~~i~~~i~lNlfiavi~~~f~~~~ 227 (229)
T 4dxw_A 189 MQEIYWWSW-VYFFSFIIICSITILNLVIAILVDVVIQKK 227 (229)
T ss_dssp HHTTCTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222 233567777888999999999999998754
No 17
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=94.29 E-value=0.11 Score=68.73 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=69.4
Q ss_pred HHHhhcchHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhccc-------cccc------------------c-
Q psy827 2405 LLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKD-------DFLE------------------P- 2458 (2693)
Q Consensus 2405 L~di~~r~~~L~nvi~sv~~n~~~l~lt~~L~~i~~y~fsii~~~~f~~-------~f~~------------------~- 2458 (2693)
++-++.+.+.|+.+.+++....+.+.+.++++++++++||.++|....+ +|.. |
T Consensus 319 ilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~ 398 (514)
T 2r9r_B 319 IFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPT 398 (514)
T ss_dssp GGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCCCCCC
Confidence 4445566788999999999888899888888888899999999876442 1111 1
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhhccccccHHHHH-HHHHHhhcccccccccccc
Q psy827 2459 LFVARVIYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQ-QKELILKNTCFICGLNRSA 2517 (2693)
Q Consensus 2459 ~~~~r~~~d~~f~~~v~ii~lnii~GiIiDtF~~lR~~~~-~~~~d~~~~CfICg~~r~~ 2517 (2693)
..++|++ .+|++++.++++|++.|+|++.|+++..++. +.++.+++..-+||.....
T Consensus 399 t~~gr~f--~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~~~~l~~h~iicg~~~~~ 456 (514)
T 2r9r_B 399 TIGGKIV--GSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSS 456 (514)
T ss_dssp SHHHHHH--HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC--------------------
T ss_pred CcchHhh--ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEeCCCccc
Confidence 1245654 3677788899999999999999999876443 4445667778899976543
No 18
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2, disease mutation; 1.70A {Mus musculus} PDB: 3im5_A 3im7_A 3qr5_A 3ila_A 3hsm_A
Probab=93.82 E-value=0.1 Score=59.48 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=63.9
Q ss_pred ceeEEEEcccccccccCccccCCEEEEEecCCCccccccccccccceeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCC
Q psy827 220 TSWKVTLFMEHRENQEEILKGGDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGG 299 (2693)
Q Consensus 220 T~WkI~l~~~~~~~~~~~Lk~GDVIRLfH~E~~~~Lt~~~~~~~~~v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg 299 (2693)
+.|+...-.... .....|..|.+|.|+|..+++||++......+..-+++.-+-. ...++..++|.|...-.-...|+
T Consensus 96 ~~~~~~~~~~~~-~~~r~v~YGq~IQLlH~~SnkyLtv~~~~~sek~~lrv~LgL~-d~~~se~swF~I~P~yK~RseGd 173 (217)
T 3im6_A 96 EKWKFMMKTAQG-GGHRTLLYGHAILLRHSYSGMYLCCLSTSRSSTDKLAFDVGLQ-EDTTGEACWWTIHPASKQRSEGE 173 (217)
T ss_dssp ---------------CCBCBTTCEEEEEETTTCCEEEECSCC------CCEEEEEE-SCCSSSTTEEEEEESSSCCCTTC
T ss_pred cccccccccccC-CCCceEEeccEEEeeecccCcEEEEcCCCcccccCcEEEEEec-cCCCCcceEEEEEccEeeccCCC
Confidence 456654332211 1236799999999999999999999876433333333332111 23567899999997633334799
Q ss_pred CCccccceeEEEccCCcceeeee
Q psy827 300 AGHWNCLFRFKHLATGHYLAAEI 322 (2693)
Q Consensus 300 ~v~w~~~fRLKHl~TG~YLa~~~ 322 (2693)
.|.-++...|.++.||.||.+..
T Consensus 174 ~V~~GD~ViL~sv~s~~yLH~S~ 196 (217)
T 3im6_A 174 KVRVGDDLILVSMSSERYLHLSY 196 (217)
T ss_dssp BCBTTCEEEEEETTTCCEEEEEE
T ss_pred ceeeCCEEEEEECCCCceEEeec
Confidence 99999999999999999999863
No 19
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=78.20 E-value=5.7 Score=49.72 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=66.7
Q ss_pred HHHhhcchHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhccc-------cccc------------------c-
Q psy827 2405 LLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKD-------DFLE------------------P- 2458 (2693)
Q Consensus 2405 L~di~~r~~~L~nvi~sv~~n~~~l~lt~~L~~i~~y~fsii~~~~f~~-------~f~~------------------~- 2458 (2693)
++-++...+.++.+.+++.+....++..+++.++++++||.++|....+ +|.+ |
T Consensus 105 ~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~ 184 (355)
T 3beh_A 105 LLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQ 184 (355)
T ss_dssp GSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCC
Confidence 3444445667888888888888889888889999999999999987764 2211 1
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhhccccccHHHHHHH--HHHhhccccccccccccccccC-----cch--hhhh
Q psy827 2459 LFVARVIYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQQK--ELILKNTCFICGLNRSAFDNKT-----VSF--EEHI 2529 (2693)
Q Consensus 2459 ~~~~r~~~d~~f~~~v~ii~lnii~GiIiDtF~~lR~~~~~~--~~d~~~~CfICg~~r~~fd~~~-----~~f--~~Hi 2529 (2693)
...+|++ .++.+++.+++++++.|+|.+.|.+-..+++.. .+..++..+-.+++.+..+.-. ..| .+.+
T Consensus 185 t~~~~~~--~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I 262 (355)
T 3beh_A 185 SFAGRVL--AGAVMMSGIGIFGLWAGILATGFYQEVRRGDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVI 262 (355)
T ss_dssp SHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred ChhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEE
Confidence 2244554 356777888899999999999997643322211 1122333344455555444211 111 1234
Q ss_pred hhccccchhhhhhhh
Q psy827 2530 TCEHNMYHYLYFIVL 2544 (2693)
Q Consensus 2530 ~~eHn~wnY~~f~~~ 2544 (2693)
-.+...-+++||+.-
T Consensus 263 ~~~G~~~~~ly~I~~ 277 (355)
T 3beh_A 263 CRIGEPGDRMFFVVE 277 (355)
T ss_dssp ---------------
T ss_pred EeCCCcCceEEEEEe
Confidence 445566677888754
No 20
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=36.80 E-value=3.5e+02 Score=32.80 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=79.2
Q ss_pred HHHHhhchHHHHHH-HhcccccccccCCCCcccccccCCCCCCcHHHHHHHHHHHHHHHhHHHHHhHHHHHH--HHHHHH
Q psy827 497 KLLREQYILKQLFK-ILQAPFLEIVEGEGPFLRIEELNDPKNAPYKYMFRLCYRILRLSQQDYRKNQEYIAK--HFGFMQ 573 (2693)
Q Consensus 497 kLLREq~iL~lL~~-iL~~pF~~~~~~~~~~l~~~el~d~~~~~~k~i~~l~Y~LL~~~~~~NrkNq~yiak--~i~~~q 573 (2693)
+-+...|.+..++. +|..+- ..+...+-..|..++++|.+++.++.+ -++.+.
T Consensus 75 ~~~~~~G~l~~Lv~~lL~s~~------------------------~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 75 ADFCQLSGMHLLVGRYLEAGA------------------------AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHTTHHHHHHHTTTTCSS------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 34567888999999 887421 134556777888899999999988865 355555
Q ss_pred HHhcC------chhhHHHHHHHHhccHHHHHHhhhHHHHHHHHHHHhhccccCchhHHHHHHHHhhcC
Q psy827 574 KQIGY------DILAEDTITALLHNNRKLLEKHITAAEIETFVGLVRKNMHSWQSRFLDYLSDLCISN 635 (2693)
Q Consensus 574 ~QIgy------~~~AedtIteLl~nN~~LLek~I~e~~I~~fI~Ll~kn~~~r~~~~LdfLssLCv~n 635 (2693)
.-+.. ...|.-+|..+.++|....+..+...-|..++.++......-..+-.-.|+.+|..+
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~ 198 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 198 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 44431 234667788888888887776666677888899987632222344556888888764
No 21
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=36.09 E-value=60 Score=33.19 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=27.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhhhccccccHHHH
Q psy827 2461 VARVIYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEK 2497 (2693)
Q Consensus 2461 ~~r~~~d~~f~~~v~ii~lnii~GiIiDtF~~lR~~~ 2497 (2693)
.+|++ ..+++++.+.++-++.|.|...|.+.+.++
T Consensus 66 ~gr~~--~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 100 (103)
T 2k1e_A 66 EGRKV--AEQVMKAGIEVFALVTAALATDFVRREEER 100 (103)
T ss_dssp SCTHH--HHHHHHHHHHHHHHTHHHHHTTGGGHHHHT
T ss_pred hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45766 466788888888999999999998876554
No 22
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene}
Probab=35.29 E-value=3.3e+02 Score=29.56 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=41.6
Q ss_pred CCEEEEEecCCCccccccccccc--cceeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCcce
Q psy827 241 GDVVRLFHAEQEKFLTMDEYKKK--QHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHYL 318 (2693)
Q Consensus 241 GDVIRLfH~E~~~~Lt~~~~~~~--~~v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~YL 318 (2693)
+...+|.+..++.+|.+...... ..+.+ ..+ .+..+-.|.++.. | +..|+|++..+|++|
T Consensus 73 ~g~y~i~~~~sg~cLdv~~~~~~~G~~v~~--~~c-----~~~~~Q~W~~~~~------g-----~g~~~i~~~~sg~cL 134 (165)
T 3pg0_A 73 DGYYKLVARHSGKALDVENASTSDGANVIQ--YSY-----SGGDNQQWRLVDL------G-----DGYYKLVARHSGKAL 134 (165)
T ss_dssp TTEEEEEETTTCCEEEEGGGCCSTTCBEEE--ECC-----CCCGGGCEEEEEC------S-----SSCEEEEETTTCCEE
T ss_pred CCEEEEEECCCCCEEEeCCCCCCCCCEEEE--EcC-----CCCCccEEEEEEC------C-----CCEEEEEECCCCcEE
Confidence 35778888888999987653211 12221 111 2346778999853 1 235999999999999
Q ss_pred eeee
Q psy827 319 AAEI 322 (2693)
Q Consensus 319 a~~~ 322 (2693)
.+..
T Consensus 135 dv~~ 138 (165)
T 3pg0_A 135 DVEN 138 (165)
T ss_dssp EEGG
T ss_pred EcCC
Confidence 8853
No 23
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene}
Probab=31.62 E-value=2.5e+02 Score=30.63 Aligned_cols=115 Identities=10% Similarity=0.130 Sum_probs=63.4
Q ss_pred cCCEEEEEecCCCccccccccccccceeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCccee
Q psy827 240 GGDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHYLA 319 (2693)
Q Consensus 240 ~GDVIRLfH~E~~~~Lt~~~~~~~~~v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~YLa 319 (2693)
++...+|....++.+|.+..-.......+....+ .+..+-.|.++... +..|||++..+|++|.
T Consensus 25 ~~g~y~i~n~~sg~cLdv~~~~~~~g~~v~~~~c-----~~~~~Q~W~~~~~~-----------~g~y~i~~~~sg~cLd 88 (165)
T 3pg0_A 25 GDGYYKLVARHSGKALDVENASTSDGANVIQYSY-----SGGDNQQWRLVDLG-----------DGYYKLVARHSGKALD 88 (165)
T ss_dssp -CCEEEEEETTTCCEEEEGGGCCSTTCBEEEECC-----CCCGGGCEEEEEEE-----------TTEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCCCEEEeCCCCCCCCCEEEEECC-----CCCccceEEEEECC-----------CCEEEEEECCCCCEEE
Confidence 4667888888889998775432111111111111 22346789988542 2479999999999998
Q ss_pred eeecCchhhhhhhcccccCCCceeEEEEecCCCCCCCcccccCcccccccCccccCCCeEEEEEcccCceEEeecc
Q psy827 320 AEIDTDETMDQMRSKLRDHHGGSVYHLVSVPHPNEISSLFELDPTTLTRADSLVPQSSYVRLHHLCTNTWVHSTSI 395 (2693)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~f~L~~~~~~~~~~s~F~L~~~~~~~~d~~V~~~SyvrIqH~~T~~WL~~~~~ 395 (2693)
+....... .....+. +-....+..+.+.+. .+.|++|++..+|.-|++...
T Consensus 89 v~~~~~~~-------------G~~v~~~--~c~~~~~Q~W~~~~~----------g~g~~~i~~~~sg~cLdv~~~ 139 (165)
T 3pg0_A 89 VENASTSD-------------GANVIQY--SYSGGDNQQWRLVDL----------GDGYYKLVARHSGKALDVENA 139 (165)
T ss_dssp EGGGCCST-------------TCBEEEE--CCCCCGGGCEEEEEC----------SSSCEEEEETTTCCEEEEGGG
T ss_pred eCCCCCCC-------------CCEEEEE--cCCCCCccEEEEEEC----------CCCEEEEEECCCCcEEEcCCC
Confidence 85321100 0111111 111112333444321 235679999999999987643
No 24
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1
Probab=30.51 E-value=55 Score=35.82 Aligned_cols=66 Identities=26% Similarity=0.312 Sum_probs=44.8
Q ss_pred CccccCCEEEEEecCCCccccccccccccceeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCC
Q psy827 236 EILKGGDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATG 315 (2693)
Q Consensus 236 ~~Lk~GDVIRLfH~E~~~~Lt~~~~~~~~~v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG 315 (2693)
..|+ |++.|||-. ++.+|.+..-. . +.+. ....+..++|+++.+. -..++||.+.||
T Consensus 6 ~~l~-g~~~~Ly~r-~g~~LqI~~dG---~----V~Gt---~~~~~~~sile~~sv~-----------~g~V~I~gv~s~ 62 (144)
T 1q1u_A 6 PQLK-GIVTRLFSQ-QGYFLQMHPDG---T----IDGT---KDENSDYTLFNLIPVG-----------LRVVAIQGVKAS 62 (144)
T ss_dssp CCCC-CEEEEEEET-TTEEEEECTTS---C----EEEE---SCTTSGGGCEEEEEEE-----------TTEEEEEETTTC
T ss_pred chhc-CceEEEEEc-CCeEEEECCCC---c----Eeee---cCCCCCceeEEEEecc-----------CCEEEEEEcccC
Confidence 3455 599999988 47788775421 1 1111 2234567899999763 136899999999
Q ss_pred cceeeeecC
Q psy827 316 HYLAAEIDT 324 (2693)
Q Consensus 316 ~YLa~~~~~ 324 (2693)
.||+....+
T Consensus 63 ~YLcMn~~G 71 (144)
T 1q1u_A 63 LYVAMNGEG 71 (144)
T ss_dssp CEEEECTTS
T ss_pred cEEEEcCCC
Confidence 999996543
No 25
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens}
Probab=30.43 E-value=69 Score=35.48 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=43.4
Q ss_pred cCCEEEEEecC--CCccccccccccccceeEEeeccCCCCCCCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCcc
Q psy827 240 GGDVVRLFHAE--QEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHY 317 (2693)
Q Consensus 240 ~GDVIRLfH~E--~~~~Lt~~~~~~~~~v~lr~~~~~~~~~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~Y 317 (2693)
-|.+++||-.. ++.+|.+..-. . +.|. . ..+..++|+++.+. -..++||.+.||.|
T Consensus 12 ~~~~~~LY~~~~rtg~~LqI~~dG---~----V~Gt-~---d~~~~s~Lei~sv~-----------~g~V~Ikgv~s~~Y 69 (155)
T 2p39_A 12 WGGLIHLYTATARNSYHLQIHKNG---H----VDGA-P---HQTIYSALMIRSED-----------AGFVVITGVMSRRY 69 (155)
T ss_dssp STTCEEEECTTSSSCCEEEECTTS---C----EEEE-S---SCCTTTCEEEEECG-----------GGEEEEEETTTTEE
T ss_pred CCCEEEEEEccCCCceEEEECCCC---c----EeCc-c---CCCCcEEEEEEeec-----------CCEEEEEEeccCcE
Confidence 36799999864 77888775421 1 1111 1 23678999998652 24799999999999
Q ss_pred eeeeecC
Q psy827 318 LAAEIDT 324 (2693)
Q Consensus 318 La~~~~~ 324 (2693)
|+....+
T Consensus 70 LcMn~~G 76 (155)
T 2p39_A 70 LCMDFRG 76 (155)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 9996543
No 26
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=29.75 E-value=1.2e+02 Score=32.67 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=26.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhhhccccccHHHHH
Q psy827 2461 VARVIYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQ 2498 (2693)
Q Consensus 2461 ~~r~~~d~~f~~~v~ii~lnii~GiIiDtF~~lR~~~~ 2498 (2693)
.+|++ .++++++.+.++-++.|.|...|.+-..++.
T Consensus 66 ~~r~~--~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~ 101 (139)
T 3eff_K 66 WGRLV--AVVVMVAGITSFGLVTAALATWFVGREQERR 101 (139)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred CHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655 3456788888888999999999877655443
No 27
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=25.73 E-value=47 Score=40.74 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=32.8
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhcccccccccc
Q psy827 2461 VARVIYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQQKELILKNTCFICGLNR 2515 (2693)
Q Consensus 2461 ~~r~~~d~~f~~~v~ii~lnii~GiIiDtF~~lR~~~~~~~~d~~~~CfICg~~r 2515 (2693)
.+|++- ++.+++.++++-++.|+|.-.|+..+.. ....+.+-|||.+.
T Consensus 108 ~gr~~~--~~~~l~G~~~~a~~~g~v~~~~~~~~~r-----~~fs~~~vI~~~~g 155 (301)
T 1xl4_A 108 LANTLV--TLEALCGMLGLAVAASLIYARFTRPTAG-----VLFSSRMVISDFEG 155 (301)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHTCCCCC-----EEECSCEEEEEETT
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHhh-----hccCCeEEEecCCC
Confidence 356554 5677777888888889999888765321 33456677898653
No 28
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=25.61 E-value=40 Score=41.95 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=52.8
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHhhccc--------cccc------------------c-ccchhhhhhhHHHHH
Q psy827 2421 SVTRNGRSIILTAVLALILVYMFSIIGYMFFKD--------DFLE------------------P-LFVARVIYDLLFFFI 2473 (2693)
Q Consensus 2421 sv~~n~~~l~lt~~L~~i~~y~fsii~~~~f~~--------~f~~------------------~-~~~~r~~~d~~f~~~ 2473 (2693)
++..+++.+++.++++++++++++.+.|.+-.+ .|.+ | ...+|++- ++.++
T Consensus 55 ~l~~~~~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~--~~~~l 132 (333)
T 1p7b_A 55 ALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIA--TLEIF 132 (333)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHH--HHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHH--HHHHH
Confidence 445667777777666666655544444544322 1211 1 12356553 56777
Q ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHhhcccccccccc
Q psy827 2474 VIIIVLNLIFGVIIDTFADLRSEKQQKELILKNTCFICGLNR 2515 (2693)
Q Consensus 2474 v~ii~lnii~GiIiDtF~~lR~~~~~~~~d~~~~CfICg~~r 2515 (2693)
+.++++-++.|+|.-.|++.+.. ....+.+-|||.+.
T Consensus 133 ~G~~~~a~~ig~i~~~~~~~~~r-----~~fs~~~VI~~~~g 169 (333)
T 1p7b_A 133 VGMSGIALSTGLVFARFARPRAK-----IMFARHAIVRPFNG 169 (333)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCC-----CEECSCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHhCCCEEEcCCCC
Confidence 77888888899999888876532 23456667888653
No 29
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=22.52 E-value=1.5e+02 Score=31.76 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=49.2
Q ss_pred CCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCcceeeeecCchhhhhhhcccccCCCceeEEEEecCCCCCCCcc
Q psy827 279 ATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHYLAAEIDTDETMDQMRSKLRDHHGGSVYHLVSVPHPNEISSL 358 (2693)
Q Consensus 279 ~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~YLa~~~~~~~~~~~~~~~~~~~~~~~~f~L~~~~~~~~~~s~ 358 (2693)
..+..++|+|..+.. ...+|+-+.||.||+...+.. +..++..++..++
T Consensus 33 ~~~~~s~l~~~~v~~-----------G~V~I~g~~sg~yL~m~~~G~--------------------v~Gs~~~s~ec~f 81 (132)
T 3q7x_A 33 RSDPGIQFQISPEGN-----------GEVLLRSTETGQFLRINPDGT--------------------VDGTRDRSDPGIQ 81 (132)
T ss_dssp TTCGGGCEEEEEEET-----------TEEEEEETTTCCEEEECTTSB--------------------EEEECC-CCGGGC
T ss_pred CCCCCcEEEEEeccc-----------CEEEEEEEcccEEEEECCCCC--------------------EeeccCCCCCcee
Confidence 457789999997631 268999999999999965532 1122333333334
Q ss_pred cccCcccccccCccccCCCeEEEEEcccCceEEeec
Q psy827 359 FELDPTTLTRADSLVPQSSYVRLHHLCTNTWVHSTS 394 (2693)
Q Consensus 359 F~L~~~~~~~~d~~V~~~SyvrIqH~~T~~WL~~~~ 394 (2693)
++..+ + ...++.|+.+.||.+|....
T Consensus 82 lE~~~---------~-~~g~v~ikg~~sg~YLamnk 107 (132)
T 3q7x_A 82 FQISP---------E-GNGEVLLRSTETGQFLRINP 107 (132)
T ss_dssp EEEEE---------E-ETTEEEEEETTTCCEEEECT
T ss_pred EEEEe---------e-cCcEEEEEeccCCeEEEECC
Confidence 44322 1 23578999999999888764
No 30
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A
Probab=22.28 E-value=1.8e+02 Score=31.71 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=47.6
Q ss_pred CCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCcceeeeecCchhhhhhhcccccCCCceeEEEEecCCCCCCCcc
Q psy827 279 ATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHYLAAEIDTDETMDQMRSKLRDHHGGSVYHLVSVPHPNEISSL 358 (2693)
Q Consensus 279 ~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~YLa~~~~~~~~~~~~~~~~~~~~~~~~f~L~~~~~~~~~~s~ 358 (2693)
..+..++|+|+.+.. ...+|+-+.||.||+...+.. +..+++.++..++
T Consensus 68 ~~s~~s~Lei~sv~~-----------GvV~I~Gv~tg~yL~Mn~dG~--------------------l~Gs~~~s~ec~f 116 (142)
T 3p6i_A 68 RSDTHIQFQISPEGN-----------GEVLLKSTETGQYLRINPDGT--------------------VDGTRDRSDTHIQ 116 (142)
T ss_dssp TTCTTCCEEEEEEET-----------TEEEEEETTTCCEEEECTTSB--------------------EEEECCTTCTTCC
T ss_pred CCCCceEEEEEeccC-----------CEEEEEEecCceEEeECCCCC--------------------CccccCCCCCeEE
Confidence 457788999997631 257999999999999965532 1123333333344
Q ss_pred cccCcccccccCccccCCCeEEEEEcccCceEEe
Q psy827 359 FELDPTTLTRADSLVPQSSYVRLHHLCTNTWVHS 392 (2693)
Q Consensus 359 F~L~~~~~~~~d~~V~~~SyvrIqH~~T~~WL~~ 392 (2693)
+++.+ + ..-+|.|+.++||.+|-.
T Consensus 117 lEi~~---------v-~~G~V~Ikgv~Sg~YLaM 140 (142)
T 3p6i_A 117 FQISP---------E-GNGEVLLKSTETGQYLRI 140 (142)
T ss_dssp EEEEE---------C-SSSCEEEEETTTTEEEEE
T ss_pred EEEEE---------E-eCCEEEEEEEecceEEEE
Confidence 44432 1 124689999999998754
No 31
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=20.57 E-value=4.1e+02 Score=28.66 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHHHHhhccc-ccc-------------------ccccchhhhhhhHHHH
Q psy827 2414 TLLNVIRSVTRN-GRSIILTAVLALILVYMFSIIGYMFFKD-DFL-------------------EPLFVARVIYDLLFFF 2472 (2693)
Q Consensus 2414 ~L~nvi~sv~~n-~~~l~lt~~L~~i~~y~fsii~~~~f~~-~f~-------------------~~~~~~r~~~d~~f~~ 2472 (2693)
.+..+++++.+. ....+..+++.++++.+++.++|....+ +|. .....+|++ .++++
T Consensus 10 ~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~--~~~~~ 87 (148)
T 3vou_A 10 TLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVF--TILYI 87 (148)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHH--HHHHH
Confidence 344445555444 2233444455555566667777664332 121 112345554 33455
Q ss_pred HHHHHHHHHHHHhhhccc
Q psy827 2473 IVIIIVLNLIFGVIIDTF 2490 (2693)
Q Consensus 2473 ~v~ii~lnii~GiIiDtF 2490 (2693)
++.+.++-.+.|.+...+
T Consensus 88 ~~g~~~~~~~~~~~~~~~ 105 (148)
T 3vou_A 88 FIGIGLVFGFIHKLAVNV 105 (148)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555556666665543
No 32
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}
Probab=20.46 E-value=2.4e+02 Score=30.67 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=48.6
Q ss_pred CCCCCCCcEEEEEeecCCCCCCCCccccceeEEEccCCcceeeeecCchhhhhhhcccccCCCceeEEEEecCCCCCCCc
Q psy827 278 SATSSKALWEIEVVQHDPCRGGAGHWNCLFRFKHLATGHYLAAEIDTDETMDQMRSKLRDHHGGSVYHLVSVPHPNEISS 357 (2693)
Q Consensus 278 ~~~s~~slW~IE~v~~~~~~Gg~v~w~~~fRLKHl~TG~YLa~~~~~~~~~~~~~~~~~~~~~~~~f~L~~~~~~~~~~s 357 (2693)
...+..++|+|..+.. ..+||+-+.||.||+...+.. +..+++.++.-+
T Consensus 35 ~~~~~~s~l~~~sv~~-----------G~V~I~gv~sg~yL~m~~~G~--------------------v~Gs~~~~~ec~ 83 (143)
T 3snv_A 35 DRSDTHIQFQISPEGN-----------GEVLLKSTETGQYLRINPDGT--------------------VDGTRDRSDTHI 83 (143)
T ss_dssp CTTCTTSEEEEEEEET-----------TEEEEEETTTTEEEEECTTSB--------------------EEEECCTTCTTS
T ss_pred CCCCCceEEEEEeccC-----------CeEEEEEEcccEEEeECCCCC--------------------EeecccCCCcce
Confidence 3457889999997631 268999999999999965532 112233333223
Q ss_pred ccccCcccccccCccccCCCeEEEEEcccCceEEeec
Q psy827 358 LFELDPTTLTRADSLVPQSSYVRLHHLCTNTWVHSTS 394 (2693)
Q Consensus 358 ~F~L~~~~~~~~d~~V~~~SyvrIqH~~T~~WL~~~~ 394 (2693)
+.+..+ ..+.+|.|+.+.||.+|....
T Consensus 84 flE~~~----------e~~g~v~i~~~~sg~Ylamnk 110 (143)
T 3snv_A 84 QFQISP----------EGNGEVLLKSTETGQYLRINP 110 (143)
T ss_dssp EEEEEE----------CSTTEEEEEETTTCCEEEECT
T ss_pred EEEEEe----------cCCcEEEEEEeeCCEEEEEcC
Confidence 333211 124568999999998887664
Done!