RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy827
(2693 letters)
>gnl|CDD|219984 pfam08709, Ins145_P3_rec, Inositol 1,4,5-trisphosphate/ryanodine
receptor. This domain corresponds to the ligand binding
region on inositol 1,4,5-trisphosphate receptor, and the
N terminal region of the ryanodine receptor. Both
receptors are involved in Ca2+ release. They can couple
to the activation of neurotransmitter-gated receptors
and voltage-gated Ca2+ channels on the plasma membrane,
thus allowing the endoplasmic reticulum discriminate
between different types of neuronal activity.
Length = 210
Score = 320 bits (822), Expect = e-100
Identities = 149/227 (65%), Positives = 164/227 (72%), Gaps = 20/227 (8%)
Query: 6 GSASFLHLGDIVSLFAEGNVCGFLSTLGLVDDRTVVCPDAGDLANAPKKFRDCLFKICPM 65
S SFL GDIVSL+ EG+V GFLSTLGLVDDR VV P AGDL N PKKFRDCLFKICP
Sbjct: 1 MSVSFLRYGDIVSLYCEGSVNGFLSTLGLVDDRCVVEPKAGDLNNPPKKFRDCLFKICPA 60
Query: 66 NRYSAQKQFWKA--AKQSASSTTDAVLLKRLHHAAEIEKKQNESENKKLLGMVVQYGSVV 123
NRY AQ+QFWKA AK + +S TD HAA IE+ QN G VV YG +
Sbjct: 61 NRYRAQQQFWKADRAKPNGNSLTD--------HAANIERHQN--------GDVVLYGQAI 104
Query: 124 QLLHLKSNKFLTVNKRLPALLEKNAMRVYLDANGN-EGSWFYILPFYKLRSTGDNVVVGD 182
QLLH KSNK+L V KRLPALL+KNAMRV LD GN EG WF I P YKLRS GDNVVVGD
Sbjct: 105 QLLHSKSNKYLAVLKRLPALLDKNAMRVGLDEAGNGEGCWFTIHPRYKLRSEGDNVVVGD 164
Query: 183 KVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVVNSSTSWKVTLFME 229
KVI+ PV+A + LHVA+N++L DNPGCKEVN S TSWKV LFM
Sbjct: 165 KVILVPVSAERY-LHVASNHDLRDNPGCKEVNASFSQTSWKVHLFMS 210
>gnl|CDD|216456 pfam01365, RYDR_ITPR, RIH domain. The RIH (RyR and IP3R Homology)
domain is an extracellular domain from two types of
calcium channels. This region is found in the ryanodine
receptor and the inositol-1,4,5- trisphosphate receptor.
This domain may form a binding site for IP3.
Length = 203
Score = 231 bits (592), Expect = 2e-69
Identities = 85/208 (40%), Positives = 120/208 (57%), Gaps = 10/208 (4%)
Query: 460 VTSLLQDIVYFIAGLENEQNKSEALELSVVNPNRDRQKLLREQYILKQLFKILQAPFLEI 519
V LL+D++ F A E E L+ + + P R RQ+LLRE+ + K + ++LQ P+ E
Sbjct: 2 VLKLLEDLIKFCAQPEEEGQH--ELKQNNLKPLRQRQRLLREEGVHKVVLELLQNPYDEK 59
Query: 520 VEGEGPFLRIEELNDPKNAPYKYMFRLCYRILRLSQQDYRKNQEYIAKHFGFMQKQIGYD 579
G+ EEL D K+ K + RLCYR L+ + R+NQ +AKH MQ Q G
Sbjct: 60 AGGDFA----EELGDEKDEKMKEIVRLCYRFLQYFCRGNRQNQALLAKHLDLMQLQSGPG 115
Query: 580 ILAEDTITALLHNNRKLLEKHITAAEIETFVGLVRKNMHSWQSRFLDYLSDLCISNKKAI 639
IL DT+ A+LHNN +LL + I A IE FV L+ K H ++LD L LC++N KA+
Sbjct: 116 ILELDTLYAVLHNNPELLNEIIEAV-IEHFVSLLEK--HGRDPKYLDVLKTLCVANGKAV 172
Query: 640 AITQELICKSVLSSRNADILIETGMTKP 667
TQ+LICK VL+ D+LI+T +
Sbjct: 173 RGTQDLICKEVLNPGE-DLLIQTNLRAS 199
Score = 187 bits (476), Expect = 1e-53
Identities = 72/182 (39%), Positives = 103/182 (56%), Gaps = 21/182 (11%)
Query: 1235 KIQQILIRMNKLCIS------RATPLSPVKPRKHEQRLLRNVGVHTIVLDLLQVPYDMK- 1287
++ ++L + K C + +KP + QRLLR GVH +VL+LLQ PYD K
Sbjct: 1 EVLKLLEDLIKFCAQPEEEGQHELKQNNLKPLRQRQRLLREEGVHKVVLELLQNPYDEKA 60
Query: 1288 -----------EDIRMNELMRLAHQFLQNFCLGNQQNQVLLHKHLDL---FLNPGIREAQ 1333
+D +M E++RL ++FLQ FC GN+QNQ LL KHLDL PGI E
Sbjct: 61 GGDFAEELGDEKDEKMKEIVRLCYRFLQYFCRGNRQNQALLAKHLDLMQLQSGPGILELD 120
Query: 1334 TVCSVFQDNSNLCNEVNEKVIQHFVHCIETHGRHVQYLKFFQTIVKAEDQFIRKCQDMVM 1393
T+ +V +N L NE+ E VI+HFV +E HGR +YL +T+ A + +R QD++
Sbjct: 121 TLYAVLHNNPELLNEIIEAVIEHFVSLLEKHGRDPKYLDVLKTLCVANGKAVRGTQDLIC 180
Query: 1394 QE 1395
+E
Sbjct: 181 KE 182
>gnl|CDD|217239 pfam02815, MIR, MIR domain. The MIR (protein mannosyltransferase,
IP3R and RyR) domain is a domain that may have a ligand
transferase function.
Length = 189
Score = 224 bits (573), Expect = 5e-67
Identities = 70/193 (36%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 237 ILKGGDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPC 296
L GDV+RLFH+EQ++ LT + T+ + A ATSS++LW IE VQ DP
Sbjct: 2 YLHSGDVLRLFHSEQQQILTYPHLDQNNDFLRTTSYESGA-VATSSRSLWRIEPVQRDPW 60
Query: 297 RGGAGHWNCLFRFKHLATGHYLAAEIDTDETMDQMRSKLRDHHGGSVYHLVSVPHPNEI- 355
RGG G W +FR +HL TG YL + + + K S Y P N+
Sbjct: 61 RGGLGKWGSVFRLRHLTTGRYLHSHEEK----PPVSEKEDWQKEVSAYGYRGFPGDNDDW 116
Query: 356 SSLFELDPTTLTRADSLVPQSSYVRLHHLCTNTWVHSTSIPI----DKDEEKPV----GC 407
+FE TT D + P S VRL H+CT W+ S ++ + + EEK G
Sbjct: 117 VEIFEKKSTTGMGQDRIKPGDSKVRLRHVCTGCWLFSHNVKLPKWGFEQEEKTCAKKEGT 176
Query: 408 APLKEDKEAFALI 420
EDKE FAL
Sbjct: 177 MWYIEDKENFALP 189
>gnl|CDD|219849 pfam08454, RIH_assoc, RyR and IP3R Homology associated. This
eukaryotic domain is found in ryanodine receptors (RyR)
and inositol 1,4,5-trisphosphate receptors (IP3R) which
together form a superfamily of homotetrameric
ligand-gated intracellular Ca2+ channels. There seems to
be no known function for this domain. Also see the
IP3-binding domain pfam01365 and pfam02815.
Length = 109
Score = 137 bits (348), Expect = 9e-38
Identities = 55/121 (45%), Positives = 73/121 (60%), Gaps = 13/121 (10%)
Query: 1896 QNGLSGKILVMQPVLRFLQLLCENHNRDLQNLLRNQ-NNKSNYNLVSETLMFLDCICGST 1954
S +I ++ +LRFLQLLCE HN DLQN LR Q N+K++YN+++ET+ L
Sbjct: 1 DQKNSQEIKLLCRILRFLQLLCEGHNLDLQNYLRQQTNSKNSYNIINETVDLLLT----- 55
Query: 1955 TGGLGLLGLYINEYNVALINQTLETLTEYCQGPCHDNQNCIATHESNGLDIITALILNDI 2014
LLG IN+ N LI Q L+TLTE QGPCH+NQ + ES LDI T L+ +
Sbjct: 56 -----LLGKNINKKNYELIVQCLDTLTELIQGPCHENQIALC--ESKFLDIATDLLQKKL 108
Query: 2015 N 2015
+
Sbjct: 109 S 109
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is 6
transmembrane helices in which the last two helices flank
a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 63.5 bits (155), Expect = 8e-11
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 50/157 (31%)
Query: 2380 ILYHLSYVMFCVLGLCMHPFFYSVL-------LLDVVYREETLLNVIRSVTRNGRSIILT 2432
++ S V + L VL LL ++ R L +++S+ R+ +S++
Sbjct: 38 LVVLPSLVSLILFLLGEDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNL 97
Query: 2433 AVLALILVYMFSIIGYMFFKDDF------------------------------------- 2455
+L L+L+++F+IIG F +
Sbjct: 98 LLLLLLLLFIFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWG 157
Query: 2456 ------LEPLFVARVIYDLLFFFIVIIIVLNLIFGVI 2486
L P V I+ ++F + +++LNL+ GVI
Sbjct: 158 DVMYDTLVPGTVLGKIFFVIFIILGGVLLLNLLIGVI 194
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 55.4 bits (134), Expect = 2e-07
Identities = 50/337 (14%), Positives = 107/337 (31%), Gaps = 75/337 (22%)
Query: 2214 LFWVSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSQP--------ALFWV------- 2258
+ +++++ + + IL + + F + A+ +
Sbjct: 76 VAFIAAWFNWLAYILGLASSSSVAAQYLLSAFFPDLVGNTWLTYGIAIAILIIFALINIR 135
Query: 2259 ----SSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSLS--------SHFSGFIWSVML 2306
S+ + I+ LI +I+ G +L ++ +L
Sbjct: 136 GIKESAKIQNILGIVKLLLPLILIILLGLVLALGGGFNLLPNSWTTFFPSGWPGVFLGLL 195
Query: 2307 I-----SGV-TVMYVPRESGIRTLVVSTILRLIYSMGPEPTLWLLGTLTVVM-KGIHLIS 2359
I G + V E R + + + L+ L+LL + + I+
Sbjct: 196 IVLWSFGGFESAANVSEEVKKRDVPKALFIGLLIVGV----LYLLVNILFLGVVPDDEIA 251
Query: 2360 IMGNQGTFTKQINQIFMD---PEILYHLSYVM--FCVLGLCMHPFFYSVLLLDVVYREET 2414
+ N + + + + ++ +LG S +L+ + R+
Sbjct: 252 KLSNLPSVA----ALLFEAVGGPWGAIIVVILLALSLLGAVNTAIVASSRVLEALARDGV 307
Query: 2415 LLNVIRSVTRNG---RSIILTAVLALIL------------------------VYMFSIIG 2447
L V + G R++ILTA+L+LIL VY+ IIG
Sbjct: 308 LPKFFAKVNKFGSPVRALILTAILSLILLLLFLLSGAAYNALLSLSAVGYLLVYLLLIIG 367
Query: 2448 YMFFKDD-FLEPLFVARVIYDLLFFFIVIIIVLNLIF 2483
+ + P R +L ++ +++ L F
Sbjct: 368 LLILRKKRPDLPRIKGRWPVAILAILFILFLLVALFF 404
Score = 36.5 bits (85), Expect = 0.18
Identities = 39/285 (13%), Positives = 83/285 (29%), Gaps = 47/285 (16%)
Query: 2232 AVLINLIVAIFYPFPGNYPSQPALFWVSSYM------SVWSNILFN-----CAVLINLIV 2280
A+L I A+ + +SS VW F A N +
Sbjct: 32 AILWGWIAALIFSLAVAL----VYAELSSAFPRNGGIYVWLKNAFGKPVAFIAAWFNWLA 87
Query: 2281 AIFYPFPGNYPSLSSHFSGFIWSVMLISGVTVMYVPRESGIRTLVVSTILRLIYSMGPEP 2340
I + + + + ++ + + + + I LI G +
Sbjct: 88 YILG-LASSSSVAAQYLLSAFFPDLVGNTWLTYGI-------AIAILIIFALINIRGIKE 139
Query: 2341 TLWLLGTLTVVMKGIHLISIM-------GNQGTFTKQINQIFMDPEILYHLSYVMFCVLG 2393
+ + L +V + + ++ G F +F LG
Sbjct: 140 SAKIQNILGIVKLLL-PLILIILLGLVLALGGGFN---LLPNSWTTFFPSGWPGVF--LG 193
Query: 2394 LCMHPFFYSVLLLDVV--YREETLLNVIRSVTRNGRSIILTAVLALI--LVYMFSI-IGY 2448
L + +S + EE + G +++ VL L+ ++++ +
Sbjct: 194 LLI--VLWSFGGFESAANVSEEVKKRDVPKALFIG--LLIVGVLYLLVNILFLGVVPDDE 249
Query: 2449 MFFKDDFLEP--LFVARVIYDLLFFFIVIIIVLNLIFGVIIDTFA 2491
+ + L V +VI++ L+L+ V A
Sbjct: 250 IAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSLLGAVNTAIVA 294
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 47.9 bits (114), Expect = 7e-05
Identities = 48/303 (15%), Positives = 103/303 (33%), Gaps = 57/303 (18%)
Query: 2213 ALFWVSSYMSVWSNILFNCAVLINLIVAIFY-------PFPG---NYPSQ---PALFWVS 2259
AL ++ ++ + + + A +I L +A+ Y P G Y + P L +++
Sbjct: 35 ALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALGPRLGFLA 94
Query: 2260 SYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSLSSHFSGFIWSVMLISGVTVMYVPRES 2319
++ + + ++ A+ I + S ++LI+ +
Sbjct: 95 GWLYLLAYVIALAAIAI-GAASYL----SYLFPGPGLLSIGPLLIILIALALI------- 142
Query: 2320 GIRTLVVSTILRLIYSMGPEPTLWLLGTLTVVMKGIHLISIMGNQGTFTKQINQIFMDPE 2379
+ T+L L G + + + +T++ I LI I+ F +F
Sbjct: 143 -----ALLTLLNL---RGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFN 194
Query: 2380 --------ILYHLSYVMFCVLGLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIIL 2431
IL + F G F ++ EE N R++ R+IIL
Sbjct: 195 PGGGSFGGILAAILLAFFAFTG------FEAI----ATLAEEV-KNPKRTI---PRAIIL 240
Query: 2432 -TAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVLNLIFGVIIDTF 2490
++ ++ + +I + D A + LF ++ + ++ F
Sbjct: 241 SLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAII-IAILALLSLF 299
Query: 2491 ADL 2493
L
Sbjct: 300 GSL 302
Score = 43.2 bits (102), Expect = 0.002
Identities = 52/311 (16%), Positives = 111/311 (35%), Gaps = 51/311 (16%)
Query: 2212 PALFWVSSYMSVWSNILFNCAVLINLIVAI--FYPFPGNYPSQPALFWVSSYMSVWSNIL 2269
P L +++ ++ + + ++ A+ I + +P PG P L + + + L
Sbjct: 88 PRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTL 147
Query: 2270 FNC-------------------AVLINLIVAIFYPFPGNY-PSLSSHFSGFIWSVMLISG 2309
N +LI +I+ +F N + G + +L +
Sbjct: 148 LNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAI 207
Query: 2310 VTVMYVPRESGIRTLVV---------STILR-LIYSMGPEPTLWLLGTLTVVMKGIHLIS 2359
+ + +G + TI R +I S+ L++LG L +V +
Sbjct: 208 LLAFFAF--TGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVG-VLPAGD 264
Query: 2360 IMGNQGTFTKQINQIFMDPEILYHLSYV-MFCVLGLCMHPFFYSVLLLDVVY---REETL 2415
+ + + + +F + + L + + +V V+Y R+ L
Sbjct: 265 LAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVS--RVLYAMARDGLL 322
Query: 2416 LNVIRSVTRNGR----SIILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFF 2471
V GR ++ILT +++LIL+ +F + F L + L+ +
Sbjct: 323 PKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNA------LVSLASVAFLIAY 376
Query: 2472 FIVIIIVLNLI 2482
+V + +L L
Sbjct: 377 LLVALALLVLR 387
>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate
receptors and protein O-mannosyltransferases.
Length = 57
Score = 40.4 bits (95), Expect = 3e-04
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 12/63 (19%)
Query: 235 EEILKGGDVVRLFHAEQEKFLT-MDEY-----KKKQHVFLRTTGRTSATSATSSKALWEI 288
++ GDVVRL H ++L DE +Q V A + LW I
Sbjct: 1 GGFVRWGDVVRLRHVTTGRYLHSHDEKLPPWGDGQQEVTGYGNPAIDANT------LWLI 54
Query: 289 EVV 291
E V
Sbjct: 55 EPV 57
Score = 40.0 bits (94), Expect = 5e-04
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 116 VVQYGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRV--YLDANGNEGSWFYILPF 168
V++G VV+L H+ + ++L + V Y + + + + I P
Sbjct: 3 FVRWGDVVRLRHVTTGRYLHSHDEKLPPWGDGQQEVTGYGNPAIDANTLWLIEPV 57
Score = 34.6 bits (80), Expect = 0.037
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 298 GGAGHWNCLFRFKHLATGHYLAAE 321
GG W + R +H+ TG YL +
Sbjct: 1 GGFVRWGDVVRLRHVTTGRYLHSH 24
Score = 32.3 bits (74), Expect = 0.30
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 175 GDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVN-----VVNSSTSWKV 224
G V GD V + V G+ LH P G +EV ++++T W +
Sbjct: 1 GGFVRWGDVVRLRHVTTGRY-LHSHDEKLPPWGDGQQEVTGYGNPAIDANTLWLI 54
>gnl|CDD|240530 cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug and
toxic compound extrusion (MATE) proteins. This family
might function as a translocase for lipopolysaccharides,
such as O-antigen. The integral membrane proteins from
the MATE family are involved in exporting metabolites
across the cell membrane and are responsible for
multidrug resistance (MDR) in many bacteria and animals.
A number of family members are involved in the synthesis
of peptidoglycan components in bacteria.
Length = 409
Score = 38.3 bits (90), Expect = 0.054
Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 64/242 (26%)
Query: 2258 VSSY--MSVWSNILFNCAVLINLIVAIFYPFPGNYPS---LSSHFSGFIWSVMLISGVTV 2312
VSS +S IL ++IN +VA++ PS L F+ + I+G
Sbjct: 2 VSSLSGISTLIKIL--AGLIINKVVAVYLG-----PSGVALLGQLQNFVTILQTIAG--- 51
Query: 2313 MYVPRESGIRTLVVSTILRLI--YSMGPEPTLWLLGTLTVVMKGIHLISIMGNQGT---- 2366
GI VV + Y E L + + ++SI+G G
Sbjct: 52 ------GGINNGVV----KYTAEYKDDEEK---LARVWSTAFRITLILSILG--GLLLLL 96
Query: 2367 FTKQINQIFMDPEILYHLSYVMFCVLGLCMHPFFYSVLLLDVV-----YREETLLNVIRS 2421
F+K ++ + + ++ L L F + LLL ++ + L+N+I
Sbjct: 97 FSKPLSSLLFGDIDYSWVFILLGLALPL----FALNNLLLAILNGLKEIKRYALINII-- 150
Query: 2422 VTRNGRSIILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVLNL 2481
S ++ +++++LVY + + G +A V+ L F + +I
Sbjct: 151 ------SSLIGLLVSVLLVYFYGLKG-----------ALLALVLNQSLIFLVTLIYSRKQ 193
Query: 2482 IF 2483
+
Sbjct: 194 PW 195
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 36.9 bits (86), Expect = 0.082
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 2213 ALFWVSSYM--SVWSNILFNCAVLINLIVAIFYPFPGNYPSQPALFWVSSYMSVWSNI-- 2268
L+ S+Y+ + + + I + + I Y G S+ LF + ++ +
Sbjct: 89 PLYSPSAYVLAKILVELPISLLQAI-IFLLIVYFMVGLPVSRFFLFLLVLLLTALAASGL 147
Query: 2269 -LFNCAVLINLIVAIFYPFPGNYPSLSSHFSGFIWSV 2304
LF A+ + A P L SGF V
Sbjct: 148 GLFIAALAPSFEDASQIGPLLLLPLLL--LSGFFIPV 182
Score = 31.1 bits (71), Expect = 6.0
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 13/112 (11%)
Query: 2387 VMFCVLGLCMHPFFYSVLLLD----VVYREETLLNVIRSVTRNGRSIILTAVLALILVYM 2442
+ F +L + V+ RE S I++ ++L+ +
Sbjct: 56 LFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLA-KILVELPISLLQAII 114
Query: 2443 FSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIV--LNLIFGVIIDTFAD 2492
F +I Y F+ L V+R LL + + L L + +F D
Sbjct: 115 FLLIVY------FMVGLPVSRFFLFLLVLLLTALAASGLGLFIAALAPSFED 160
>gnl|CDD|221739 pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 230
Score = 36.6 bits (85), Expect = 0.11
Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 2372 NQIFMDPEILYHLSYVMFCVLGLCMHPFFYSVLLLDVVYREET--LLNVIRSVTRNGRSI 2429
+ +L S++ L P ++L +V RE + ++ S+ + I
Sbjct: 37 TGLSPGSLLLSSFSFLSALFL-----PLLIAILASLLVSREFKNGTIKLLLSLPISRGKI 91
Query: 2430 ---------ILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVLN 2480
IL+ + +L+L+ + I G + F L + ++ LL + ++++L
Sbjct: 92 FLAKLLVLLILSLLASLLLLLLSLIAGLLLGGSGFSLSLLLGALLLLLLLSLLALLLILL 151
Query: 2481 LIF 2483
++F
Sbjct: 152 ILF 154
Score = 31.2 bits (71), Expect = 5.5
Identities = 6/57 (10%), Positives = 21/57 (36%)
Query: 2423 TRNGRSIILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVL 2479
+ + ++ +L L+L + ++ + + L F+ ++I +
Sbjct: 7 LKRTKIFLILLILPLLLALLALLLFGVNGDTGLSPGSLLLSSFSFLSALFLPLLIAI 63
>gnl|CDD|223701 COG0628, yhhT, Predicted permease, member of the PurR regulon
[General function prediction only].
Length = 355
Score = 37.2 bits (87), Expect = 0.11
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 2427 RSIILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVLNLIFGVI 2486
+ I+L +LAL+L Y+ + + + + L ++ LL ++I+++ L+ +
Sbjct: 34 QPILLPLLLALVLAYLLNPL-VRRLEKRGIPRLLAVLLV--LLLILLLIVLLGLLVIPSL 90
Query: 2487 IDTFADL 2493
I+ +L
Sbjct: 91 IEQIQNL 97
>gnl|CDD|226884 COG4478, COG4478, Predicted membrane protein [Function unknown].
Length = 210
Score = 35.9 bits (83), Expect = 0.19
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 2375 FMDPEILYHLSYVMFCVLGLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIILTAV 2434
F D + L+HL ++ + L PF + + R + L +S+IL V
Sbjct: 84 FADVKNLFHLVQIVAIFILL---PFLPLFIYRFIKKRFLSYLK---------KSLILLLV 131
Query: 2435 LALILVYMFSIIGYMFFKDDFLEPLFVAR----------VIYDL--LFF---FIVIIIVL 2479
L LI+ S+IG+ F F + LFV +IY L FF F++ ++V
Sbjct: 132 LPLIIGVAASLIGFDIFFTLFHKILFVDSTWLFDPAKDPIIYILPERFFMHCFLLFLLVY 191
Query: 2480 NLIFGVII 2487
+IFGV+
Sbjct: 192 EIIFGVLY 199
>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane].
Length = 424
Score = 36.3 bits (84), Expect = 0.21
Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 43/289 (14%)
Query: 2237 LIVAIFYPFPGNYPS--QPALF-WVSSYMS----VWSNILFNCAVLINLIVAIFYPFPGN 2289
LI+A+ + P +F ++S IL + + L++ +F P
Sbjct: 6 LILALSFLIPKLGALWIAALVFLFISLAFLAGLGSTILILAALLLALLLLLLLFLPVAFK 65
Query: 2290 YPSLSSHFSGFIWSVML-----ISGVTVMYVPRESG---------IRTLVVSTILRLIYS 2335
+ F+ ++L + P R L+ ++ L+
Sbjct: 66 LLLSLLNLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLFALLL- 124
Query: 2336 MGPEPTLWLLGTLTVVMK---GIHLISIMGNQGTFTKQINQIFMDPEILYHLSYVMFCVL 2392
G L LLG++ + + G+ ++ ++ L
Sbjct: 125 NGRILLLVLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKNYAGSL----MAAA 180
Query: 2393 GLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFK 2452
L + +L + TLL + + +++LT +L + ++ +F
Sbjct: 181 LLFPALLLW--ILGSWLLG--TLLAALALLI----ALLLTGSRSLAALLALILLLALFLV 232
Query: 2453 DDFLEPLFVARVIYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQQKE 2501
L + + L ++ ++L + G+ + +L + +
Sbjct: 233 LLLLRRVLL------LGLLAALLALILIALVGIELFEPLELLLARLGTD 275
>gnl|CDD|223724 COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+
antiporter, MnhD subunit [Energy production and
conversion / Inorganic ion transport and metabolism].
Length = 504
Score = 36.6 bits (85), Expect = 0.22
Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 19/126 (15%)
Query: 2389 FCVLGLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIILTAVLALIL-------VY 2441
+ GL F S LL + N IL + ALIL +
Sbjct: 380 LSLAGLPPFNGFISKFLL-----------IQALFKANALLAILIILAALILLASLATFIS 428
Query: 2442 MFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQQKE 2501
+ I +FF V V L+ +VI+ +L L+ G+ D +
Sbjct: 429 LARIFMLLFFGQGAPIERDVPEVPL-LMLAPMVILAILCLVLGLAPDPLLPKILQAAAAI 487
Query: 2502 LILKNT 2507
L++
Sbjct: 488 LLVPGL 493
>gnl|CDD|215728 pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
Length = 441
Score = 36.1 bits (84), Expect = 0.26
Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 47/206 (22%)
Query: 2300 FIWSVMLISGVTVMYVPRESGIRTLVVSTILRLIYSMGPEPTLWLLGTLTVVMKGIHLIS 2359
F W++ + G+ VP G R L + L + L ++G L ++ +
Sbjct: 55 FWWAMPALIGLGNYLVPLMLGARDLAFPRLNALSF------WLLVVGGLLALVS----LL 104
Query: 2360 IMGNQGT-FTKQINQIFMDPEILYHLSYVMFCVLGLCMHPFFYSVLLLDVVYREETLLNV 2418
+ G G +T+ P S V +LGL LL +N
Sbjct: 105 LGGGAGRGWTEYP------PLSSTSSSPVDLWILGL--LLVGIGSLL--------GAINF 148
Query: 2419 IRSVTRNGR--------------SIILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARV 2464
I ++ R S++ TA+L L + ++ M D F +
Sbjct: 149 IVTIL-KRRAPGMTLSRMPLFVWSLLATAILILFAFPVLAVALLMLLLDRNFGTSFFDPL 207
Query: 2465 IYDLLFFFI----VIIIVLNLIFGVI 2486
+Y LF+F V I++L FG++
Sbjct: 208 LYQHLFWFFGHPEVYILIL-PAFGIV 232
>gnl|CDD|173880 cd08515, PBP2_NikA_DppA_OppA_like_10, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 460
Score = 35.7 bits (83), Expect = 0.37
Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 29/141 (20%)
Query: 785 RDPQEPVTPVKYARLWSEIPSKMSINDY---DTNRTPDPNKEAVRQRFSSTISFRNPKKY 841
RDP + + ++ + ++ Y + PDP A +R + + PK Y
Sbjct: 91 RDPDS--KAPRGRQNFNWLDKVEKVDPYTVRIVTKKPDP---AALERLAGLVGPIVPKAY 145
Query: 842 VVKL-----ARDLIYFGFYSFSDL-----LRLTKTLLSILDCISDDDYIKGKIPTAEGGV 891
K+ A + G Y ++ + L DDY GK P E
Sbjct: 146 YEKVGPEGFALKPVGTGPYKVTEFVPGERVVLEA----------FDDYWGGK-PPIEKIT 194
Query: 892 LRSIGDMGAVVTGLTLGASGI 912
R I D+ V L G I
Sbjct: 195 FRVIPDVSTRVAELLSGGVDI 215
>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed.
Length = 285
Score = 35.3 bits (82), Expect = 0.41
Identities = 43/225 (19%), Positives = 75/225 (33%), Gaps = 41/225 (18%)
Query: 2200 SEMKWQKKLRGQPALFWVSSYM-----SVWSNILFNCAVLINLIVAIFY--PFPGNYPSQ 2252
K L + Y+ +V F +I LI+ I Y F
Sbjct: 72 VVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRI 131
Query: 2253 PAL--FWVSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSLSSHFSGFIWSVMLISGV 2310
P VS +W+ L LI+ ++Y SL ++ FI+ I
Sbjct: 132 PLFKNLVVSL---LWA--------LSPLILGVYYYQLT-IFSLLLLYAVFIFLKSFIR-- 177
Query: 2311 TVMY------VPRESGIRTLVVSTILRLIYSMGPEPTLWLLGTLTVVMKGIHLISIMGNQ 2364
+++ R+SG++TL + +G E TL L L ++ + L+ +
Sbjct: 178 EIVFDIKDIEGDRKSGLKTLPIV--------LGKERTLKFLLILNLL--FLILLILGVYT 227
Query: 2365 GTFTKQINQIFMDPEILYHLSYVMFCVLGLCMHPFFYSVLLLDVV 2409
G + + + + Y L Y++ Y LL
Sbjct: 228 GLLPLLL--LVLLLLLAYVLYYIIKLFAADDKKDLLYLSLLDKEH 270
>gnl|CDD|216883 pfam02118, Srg, Srg family chemoreceptor.
Length = 275
Score = 34.9 bits (81), Expect = 0.46
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 17/152 (11%)
Query: 2374 IFMDPEILYHLSYVMFCVLGLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIILTA 2433
F+ I Y+L +L V R +L + R L
Sbjct: 79 GFLT--IYYYLYNYFLH-----AKFLSQILL---SVNRMSCVLFPVTHEKFWSRYYKLVL 128
Query: 2434 VLALILVYMFS---IIGYMFFKDDF--LEPLFVARVIYDLLFFFIVIIIVLNLIFGVI-- 2486
++ I+ + F +I ++ + V + F +I +L L+F +I
Sbjct: 129 IIIFIIPFSFIWNILISRVYVNPVNGGFSINYEKAVPWASTSLFQLIYFILILVFTIITS 188
Query: 2487 IDTFADLRSEKQQKELILKNTCFICGLNRSAF 2518
I T L ++ + + ++ I F
Sbjct: 189 IVTSYKLAKLSKRIKSVERSLTIITIFISVVF 220
>gnl|CDD|227100 COG4758, COG4758, Predicted membrane protein [Function unknown].
Length = 235
Score = 34.3 bits (79), Expect = 0.73
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 15/94 (15%)
Query: 2429 IILTAVLALILVYM-------FSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVLNL 2481
I L ++ I++ F + +F V ++I LFF IV +I L
Sbjct: 13 IFLALMIIQIVIETLFFWPLVFLLALLLFRIYTTRSRASVLKIIALFLFFAIVFLIPFTL 72
Query: 2482 I---FGVIIDTFADL-----RSEKQQKELILKNT 2507
+ +I +K++ +L+
Sbjct: 73 LGFLLAIIFIFIGLYLIIKYIIKKREPQLVNLKK 106
>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family. Mutations in
human SLC26A2 lead to several human diseases.
Length = 279
Score = 34.5 bits (80), Expect = 0.73
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 2213 ALFWVSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSQPALFWVSSYMSVWSNILFNC 2272
ALF + + W ++ + LI L++ P LFW+ + + + I+
Sbjct: 54 ALFDLVDNLWNWPTLVIGLSFLIFLLIIKLLP-----KRLKKLFWIPAPAPLVAVIVATV 108
Query: 2273 AVLINLI----VAIFYPFPGNYPSLSSHFSGFIWSVMLI 2307
I L V+I P P S WS++L
Sbjct: 109 ISYIFLADRYGVSIIGEIPSGLPPPSLPDVPLDWSLLLD 147
>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. Members of this family use
proteolytic activity within the membrane to transfer
information across membranes to integrate gene expression
with physiologic stresses occurring in another cellular
compartment. The domain core structure appears to contain
at least three transmembrane helices with a catalytic
zinc atom coordinated by three conserved residues
contained within the consensus sequence HExxH, together
with a conserved aspartate residue. The S2P/M50 family of
RIP proteases is widely distributed; in eukaryotic cells,
they regulate such processes as sterol and lipid
metabolism, and endoplasmic reticulum (ER) stress
responses. In sterol-depleted mammalian cells, a two-step
proteolytic process releases the N-terminal domains of
sterol regulatory element-binding proteins (SREBPs) from
membranes of the ER. These domains translocate into the
nucleus, where they activate genes of cholesterol and
fatty acid biosynthesis. It is the second proteolytic
step that is carried out by the SREBP Site-2 protease
(S2P) which is present in this CD superfamily.
Prokaryotic S2P/M50 homologs have been shown to regulate
stress responses, sporulation, cell division, and cell
differentiation. In Escherichia coli, the S2P homolog
RseP is involved in the sigmaE pathway of
extracytoplasmic stress responses, and in Bacillus
subtilis, the S2P homolog SpoIVFB is involved in the
pro-sigmaK pathway of spore formation. Some of the
subfamilies within this hierarchy contain one or two PDZ
domain insertions, with putative regulatory roles, such
as the inhibition of substrate cleavage as seen by the
RseP PDZ domain.
Length = 180
Score = 33.4 bits (77), Expect = 0.90
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 12/98 (12%)
Query: 2391 VLGLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIILTA-VLA-LILVYMFSIIGY 2448
G+ + P + R R R ++ A LA L+L + ++
Sbjct: 46 PYGIILIPLGGYAKPVGENPRAF-------KKPRWQRLLVALAGPLANLLLALLLLLLLL 98
Query: 2449 MFFKDDFLEPLFVARVIYDLLFFFIVIIIVLNLIFGVI 2486
+ A L F+ +I NL V
Sbjct: 99 LLGGLPPAPVGQAASSGLANLLAFLALI---NLNLAVF 133
Score = 31.8 bits (73), Expect = 3.3
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 2222 SVWSNILFNCA-VLINLIVAIFYPFPGNYPSQPALFWVSSYMSVWSNILFNCAVLINLIV 2280
W +L A L NL++A+ V S L LINL +
Sbjct: 71 PRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPPAPVGQAASSGLANLLAFLALINLNL 130
Query: 2281 AIF 2283
A+F
Sbjct: 131 AVF 133
>gnl|CDD|225022 COG2111, MnhB, Multisubunit Na+/H+ antiporter, MnhB subunit
[Inorganic ion transport and metabolism].
Length = 162
Score = 33.1 bits (76), Expect = 0.95
Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Query: 2402 SVLLLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKDDFLEP--- 2458
+++LL + + + + R + + + ++ L+ + G D FLE
Sbjct: 60 AIILLLLAFGILPVRKLFRELLDALILVGVGLLVLLLAGAVLGNPGDPSISDYFLEHALP 119
Query: 2459 -LFVARVIYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQQKE 2501
++ +L F ++ + ++I L + +KE
Sbjct: 120 IGGGTNLVNAILVDFRGFDVLG-EVAVLLIAALGVLALLRGRKE 162
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This model
represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 34.2 bits (79), Expect = 1.00
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 30/158 (18%)
Query: 2258 VSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSLSSHF---SGFIWSVM-------LI 2307
VS+ + +I+ VAIF L F + ++
Sbjct: 316 VSTDHAFLVSIIVGAVNFAFTFVAIF---------LVDRFGRRPLLLIGAAGMAICLFVL 366
Query: 2308 SGVTVMYVPRE---SGIRTLVVSTILRLIYSMGPEPTLWLLGT----LTVVMKGIHLISI 2360
+ +V SG +V + ++MG P W++ + L++ KGI +
Sbjct: 367 GILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVA 426
Query: 2361 MGNQGTFTKQINQIF--MDPEILYHLSYVMFCVLGLCM 2396
F + +F M I ++ F L +
Sbjct: 427 ANWLANF--IVGFLFPTMLESIGVGGVFIFFGGLNVLG 462
>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family. This family
includes a range of acyltransferase enzymes. This domain
is found in many as yet uncharacterized C. elegans
proteins and it is approximately 300 amino acids long.
Length = 326
Score = 34.0 bits (78), Expect = 1.0
Identities = 31/209 (14%), Positives = 66/209 (31%), Gaps = 36/209 (17%)
Query: 2272 CAVLINLIVAIFYPFPGNYPSLSSHFSGFIWSV------MLISG-VTVMYVPRESGIRTL 2324
V+ ++ + P P L + ISG + + R +
Sbjct: 13 LLVVFGHVLLAYGSGPFGLPLLLALLFLVFLGRFAVPLFFFISGYLLALSRSRRRSLFKF 72
Query: 2325 VVSTILRLIYSMGPEPTLWLLGTLTVVMKGIHLISIMGNQGTFTKQINQIFMDPEILYHL 2384
+ +LRL+ L ++ + + + +F HL
Sbjct: 73 LKKRLLRLL------IPYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGG-PNGHL 125
Query: 2385 SYVMFCVLGLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFS 2444
++ + F + +LL ++ + R + ++L +LAL+L+
Sbjct: 126 WFL------PAL--FVFYLLLP-----------LLLRLLRKLKKLLLLLLLALLLLLSLL 166
Query: 2445 IIGYMFFKDDFLEPLFVARVIYDLLFFFI 2473
I + L P + +I L FF +
Sbjct: 167 YILILLV---GLPPTVLNLLIGLLPFFLL 192
Score = 32.9 bits (75), Expect = 2.2
Identities = 36/275 (13%), Positives = 76/275 (27%), Gaps = 42/275 (15%)
Query: 2212 PALFW---VSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSQ--PALFWVSSYMSVWS 2266
P LFW + + +L+ L++ + + N PALF + +
Sbjct: 83 PYLFWSLLYFLLGLLVGGLSVYGLLLLLLLLGLLFGGGPNGHLWFLPALFVFYLLLPLLL 142
Query: 2267 NILFNCAVLINLIVAIFYPFPGNYPSLSSHFSGFIWSVMLISGVTVMYVPRESGIRTLVV 2326
+L L+ L++ L + L+ G+ ++ G
Sbjct: 143 RLLRKLKKLLLLLLLALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFL---LGA----- 194
Query: 2327 STILRLIYSMGPEPTLWLLGTLTVVMKGIHLISIMGNQGTFTKQINQIFMDPEILYHLSY 2386
L+ L L V++ + L++++ + Y
Sbjct: 195 -----LLARYRKRIRSKRLLLLIVILLALALLALILLLLFLFG------LVYLAPELYGY 243
Query: 2387 VMFCVLGLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIILTAVLALI--LVYMFS 2444
+L L + LLL L L +Y+
Sbjct: 244 FSLLLLLLGVLLLLLLALLL----------------ANLRSLKRLLKYLGKYSLGIYLIH 287
Query: 2445 IIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVL 2479
+ L + ++ LL + +++ L
Sbjct: 288 PPILLLLTKLLLLLPPLGPILLFLLALVLTLLVSL 322
>gnl|CDD|222537 pfam14093, DUF4271, Domain of unknown function (DUF4271). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
221 and 326 amino acids in length.
Length = 207
Score = 33.3 bits (77), Expect = 1.1
Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 2355 IHLISIMGNQGTFTKQINQIFMDPE------ILYHLSYVMFCVLGLCMHPFFYSVLLLDV 2408
+ + ++ F K+ F+ I F + S+ +
Sbjct: 11 LFAVLFARSKKFFAKRFKDFFLLKFRDKYFIIETGKENRPFQLFLFLQTCLLLSLFI--Y 68
Query: 2409 VYREETLLNVIRSVTRNGRSIILTAVLALILV--YMFSIIGYMFF----KDDFLEPLFVA 2462
+Y + L + SV +I V IL+ ++ +IG++FF D +L
Sbjct: 69 LYLRDFGLELFFSVQLIVFGLIFGGVFLFILLKYILYRLIGWLFFDKKKIDQWLFSKLSL 128
Query: 2463 RVIYDLLFFFIVIIIVLN--LIFGVII 2487
+ LL F +V+++V L F + +
Sbjct: 129 SSYFGLLLFPLVLLLVYFDSLSFYIAV 155
Score = 31.4 bits (72), Expect = 4.2
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 2387 VMFCVLGLCMHPFFYSVLLLDVVY--REETLLNVIRSVTRNGRSIILTAVLALILVYMFS 2444
+F VL F++ D + + + L L + S
Sbjct: 10 FLFAVL-FARSKKFFAKRFKDFFLLKFRDKYFIIETGKENRPFQLFLFLQTCL----LLS 64
Query: 2445 IIGYMFFKDDFLEPLFVARVI-YDLLFFFIVIIIVLNLIFGVII 2487
+ Y++ +D LE F ++I + L+F + + I+L I +I
Sbjct: 65 LFIYLYLRDFGLELFFSVQLIVFGLIFGGVFLFILLKYILYRLI 108
>gnl|CDD|222582 pfam14184, YrvL, Regulatory protein YrvL. YrvL prevents expression
and activity of the YrvI sigma factor. It may function as
an anti-sigma factor.
Length = 134
Score = 32.6 bits (75), Expect = 1.1
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 2429 IILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVII--IVLNLIFGVI 2486
I+ A+ +I+ + +G F L + LLFF I +I + L L V+
Sbjct: 8 FIIIALALIIVFAIIFFVGVGIFS---LLGFEYESIGALLLFFLIFLILGLPLELFEKVL 64
Query: 2487 IDTFADLRSEKQQ 2499
+ LR K
Sbjct: 65 LKPLLKLRISKWL 77
>gnl|CDD|224196 COG1277, NosY, ABC-type transport system involved in multi-copper
enzyme maturation, permease component [General function
prediction only].
Length = 278
Score = 33.6 bits (77), Expect = 1.2
Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 30/223 (13%)
Query: 2294 SSHFSGFIWSVMLISGVTVMYVPRESGIRT--LVVSTILRLIYSMGPEPTLWLLGTLTVV 2351
S F + +L +G+ ++ + I + L + L L S + L L ++
Sbjct: 18 SKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLPLLAIL 77
Query: 2352 MKGIHLISIMGNQGTFTKQINQIFMDPEILYHLSY-------VMFCVLGLCMHPFFYSVL 2404
G LIS GT I LS V+ LG + ++
Sbjct: 78 -LGADLISSEFESGT-------------IKLLLSKPISRSNIVLGKFLGALLVILIIILI 123
Query: 2405 LLDVVYREETLLNVIRSVTRNGRSIILT-AVLALILVYMFSIIGYMFFKDDFLEPLFVAR 2463
+ LL + S +L +L+ + I + +A
Sbjct: 124 SFISLL--TLLLLFGFPGNVSSISRLLLFLGSSLLYGLVLLSISLLISS--LFSSSSLAL 179
Query: 2464 VIYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQQKELILKN 2506
++ + ++ II +LI I + L+L
Sbjct: 180 LV--SIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPL 220
>gnl|CDD|112955 pfam04165, DUF401, Protein of unknown function (DUF401). Members if
this family are predicted to have 10 transmembrane
regions.
Length = 386
Score = 34.0 bits (78), Expect = 1.2
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 12/69 (17%)
Query: 2429 IILTAVLAL----ILVYMFSI------IGYMFFKDDFLEPLFVARVIYDLLF--FFIVII 2476
++++AV+ + I V MF + IGY+FF E L R ++ LLF + I+II
Sbjct: 153 VLVSAVVGISIREISVKMFPLTILAATIGYLFFNGKLKECLSKPRNLFMLLFNLYPIIII 212
Query: 2477 IVLNLIFGV 2485
+VL+++ G+
Sbjct: 213 LVLSVLLGL 221
>gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain.
The small mechanosensitive channel, MscS, is a part of
the turgor-driven solute efflux system that protects
bacteria from lysis in the event of osmotic shock. The
MscS protein alone is sufficient to form a functional
mechanosensitive channel gated directly by tension in the
lipid bilayer. The MscS proteins are heptamers of three
transmembrane subunits with seven converging M3 domains,
and this MscS_porin is towards the N-terminal of the
molecules. The high concentration of negative charges at
the extracellular entrance of the pore helps select the
cations for efflux.
Length = 239
Score = 33.0 bits (76), Expect = 1.4
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 2565 KDRNLDWFPRLRAMSLAADEGEAEQI--ELRSLQSQLETTQFLVTNLSQQLSELRDQMTE 2622
K + FP L +SL+ E Q +L+ LQ QL+ + L + + Q++E
Sbjct: 65 KKTDAPVFPELANLSLSQLEQRLAQTLSQLQELQEQLQQENSQLIELQTRPERAQQQLSE 124
Query: 2623 QRKQRQRI 2630
R++ Q I
Sbjct: 125 ARRRLQEI 132
>gnl|CDD|198299 cd03190, GST_C_Omega_like, C-terminal, alpha helical domain of
Class Omega-like Glutathione S-transferases.
Glutathione S-transferase (GST) C-terminal domain
family, Saccharomyces cerevisiae Omega-like subfamily;
composed of three Saccharomyces cerevisiae GST
omega-like (Gto) proteins, Gto1p, Gto2p (also known as
Extracellular mutant protein 4 or ECM4p), and Gto3p, as
well as similar uncharacterized proteins from fungi and
bacteria. The three Saccharomyces cerevisiae Gto
proteins are omega-class GSTs with low or no GST
activity against standard substrates, but have
glutaredoxin/thiol oxidoreductase and dehydroascorbate
reductase activity through a single cysteine residue in
the active site. Gto1p is located in the peroxisomes
while Gto2p and Gto3p are cytosolic. The gene encoding
Gto2p, called ECM4, is involved in cell surface
biosynthesis and architecture. S. cerevisiae ECM4
mutants show increased amounts of the cell wall hexose,
N-acetylglucosamine. More recently, global gene
expression analysis shows that ECM4 is upregulated
during genotoxic conditions and together with the
expression profiles of 18 other genes could potentially
differentiate between genotoxic and cytotoxic insults in
yeast.
Length = 142
Score = 32.2 bits (74), Expect = 1.6
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 570 GFMQKQIGYDILAEDTITAL------LHNNRKLLEKHITAAEIETFVGLVR 614
GF Q YD ++ AL L LL +T A+I F L+R
Sbjct: 27 GFATTQEAYDKAVKELFEALDKLEKRLSKQPYLLGDRLTEADIRLFTTLIR 77
>gnl|CDD|217331 pfam03036, Perilipin, Perilipin family. The perilipin family
includes lipid droplet-associated protein (perilipin) and
adipose differentiation-related protein (adipophilin).
Length = 390
Score = 33.6 bits (77), Expect = 1.6
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 2581 AADEGEAEQIE------LRSLQSQLETT-QFLVTNLSQQLSELRDQMTEQRKQRQRIGLL 2633
D+ EQ+E RSL QL+TT LV+++ + +++Q E R+ +
Sbjct: 291 QEDDARPEQLESRTLSLTRSLTQQLQTTCLSLVSSVQGLPANVQEQAGEVRRHAGDLQAS 350
Query: 2634 NSTSAYIHNLPIQVLKF 2650
S ++ + ++ Q L
Sbjct: 351 FSKASSLGDVSAQELSS 367
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 33.4 bits (76), Expect = 1.7
Identities = 31/221 (14%), Positives = 76/221 (34%), Gaps = 19/221 (8%)
Query: 2303 SVMLISGVTVMYVPRESGIRTLVVSTILRLIYSMGPEPTLWLLGTLTVVMKGIHLISIMG 2362
V+L + G L++ + R + + E + + + ++ ++LI
Sbjct: 6 PVILAKSPLEIIAALILGFLFLLLRILSRFLRRL-LEFQVLVDASALIIAPILYLIIFGL 64
Query: 2363 NQGTFTKQINQIFM--DPEILYHLSYV-MFCVLGLCMHPFFYSVLLLDVVYREETLLNVI 2419
G +++ +P + Y V ++ + F L RE L +
Sbjct: 65 LFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSAL-FREREFGTLERL 123
Query: 2420 RSVTRNGR-----SIILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIV 2474
+ I+ V+A ++ + ++ FL LL ++
Sbjct: 124 LVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFL-------GSLLLLLLLLL 176
Query: 2475 IIIVLNLIFGVIIDTFADLRSEKQQKELILKNT--CFICGL 2513
++++ + G+++ TFA + + L F+ G+
Sbjct: 177 LLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGV 217
>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for
N-linked glycosylation [General function prediction
only].
Length = 773
Score = 33.6 bits (77), Expect = 1.7
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 2397 HPFFYSVLLLD-VVYREETLLNVIRSVTRNGRSI---ILTAVLALILVY-----MFSIIG 2447
+ + ++LLL +V L + T + LT + LIL + G
Sbjct: 215 YYYILAILLLYALVLL--VLAFLRGKKTDILGFVGLVTLTLLSLLILPPLLGFSGYYYSG 272
Query: 2448 YMF-FKDDFLEPLFVA----RVIYDLLFFFIVIIIVLNLIFGVII 2487
+ L L + + FF ++ + L+L +
Sbjct: 273 FSVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLALILGG 317
>gnl|CDD|217759 pfam03845, Spore_permease, Spore germination protein.
Length = 320
Score = 33.4 bits (77), Expect = 1.8
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 2428 SIILTAVLALILVYMFSIIGYMFFKDDFLE--------PLFVARVIYDLLFFFIVIIIVL 2479
+++L ++ L+LV ++ + F + +E L L+F + VL
Sbjct: 37 AVLLGGLIGLLLVLLYYKLLKKFPEKTLIEYMKKILGKWLGSLLSFLFALYFLYLAGRVL 96
Query: 2480 NLIFGVIIDTFA 2491
F ++ TF
Sbjct: 97 R-DFSEVLQTFL 107
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor Srx.
Chemoreception is mediated in Caenorhabditis elegans by
members of the seven-transmembrane G-protein-coupled
receptor class (7TM GPCRs) of proteins which are of the
serpentine type. Srx is part of the Srg superfamily of
chemoreceptors. Chemoperception is one of the central
senses of soil nematodes like C. elegans which are
otherwise 'blind' and 'deaf'.
Length = 275
Score = 32.9 bits (76), Expect = 1.8
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 2429 IILTAVLALILVYMF---SIIG-YMFFKDDFL-----EPLFVARVIYDLLFFFIVIIIVL 2479
II+T + + ++ +G + ++ + L E A + + F ++++++
Sbjct: 113 IIITFIWIIAIIISTLFYFPLGCHFYYSPESLTWSFDEDPPCAEIGWYGDFLKNLVLVII 172
Query: 2480 NLIFGVIIDTFADLR--------SEKQQKELILKNTCFI 2510
I VI TF LR S ++ K+ K F
Sbjct: 173 TNIINVI--TFIKLRKFSKKSSLSSEESKKRRKKEINFF 209
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 33.5 bits (77), Expect = 1.9
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 2419 IRSVTRNGRSIILTAVLALILVYMFSIIGYMFF----KDDFLEPLFVARVIYDLLFFFIV 2474
+ RS + + L+++ I+G + K E L + V F I+
Sbjct: 475 LLGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKWSVPELLGM--VGAMFGAFGIL 532
Query: 2475 IIIVLNLIF-------GVIIDTF 2490
++V+ LI G I F
Sbjct: 533 GLLVVGLILVPGLVAIGQGILGF 555
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease). [Transport
and binding proteins, Amino acids, peptides and amines].
Length = 482
Score = 33.2 bits (76), Expect = 2.4
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 24/99 (24%)
Query: 2204 WQKKLRGQPALFWVSSYMSVWSNIL----------FNCAVLINLIVAIFYPFPGNYPSQP 2253
W KL P +S+M+ W N+ + A LI IV++ P Y
Sbjct: 83 WSAKLAP-PRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGR-EYIPTR 140
Query: 2254 A------------LFWVSSYMSVWSNILFNCAVLINLIV 2280
++S + W + + A +L+
Sbjct: 141 WHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLG 179
>gnl|CDD|133382 cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR
transcription regulator. Helix-turn-helix (HTH)
multidrug-efflux transporter transcription regulator,
BmrR and YdfL of Bacillus subtilis, and related proteins;
N-terminal domain. Bmr is a membrane protein which causes
the efflux of a variety of toxic substances and
antibiotics. BmrR is comprised of two distinct domains
that harbor a regulatory (effector-binding) site and an
active (DNA-binding) site. The conserved N-terminal
domain contains a winged HTH motif that mediates DNA
binding, while the C-terminal domain binds coactivating,
toxic compounds. BmrR shares the N-terminal DNA binding
domain with other transcription regulators of the MerR
superfamily that promote transcription by reconfiguring
the spacer between the -35 and -10 promoter elements.
Length = 108
Score = 30.9 bits (71), Expect = 2.4
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 2118 LLKPCGTYTDPKMIQALEYYASHTAQIEIVRQDRTLEQIVFPIPEICEYLTEDTKSKV 2175
LLKP Y DP YY+ Q+E + + + L + FP+ EI E L D ++
Sbjct: 25 LLKPA--YVDPD--TGYRYYS--AEQLERLNRIKYLRDLGFPLEEIKEILDADNDDEL 76
>gnl|CDD|201987 pfam01813, ATP-synt_D, ATP synthase subunit D. This is a family of
subunit D form various ATP synthases including V-type H+
transporting and Na+ dependent. Subunit D is suggested to
be an integral part of the catalytic sector of the
V-ATPase.
Length = 191
Score = 32.2 bits (74), Expect = 2.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1553 KLLEEKEEKLCVKVLRTLREMMAIDSEYGEKVKEAYINF 1591
KLL++K + L + LRE + E E +KEAY +
Sbjct: 17 KLLKKKRDALIREFRALLREAKELREELEEALKEAYFSL 55
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found in
organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 32.8 bits (76), Expect = 2.7
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 2427 RSIILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVII-IVLNLIFGV 2485
R +I++A+L+++ Y Y L F V+I +V + G+
Sbjct: 285 RGLIVSAILSIVATY---FATYWLLPAAGKGFL-------WWNLFLAVLIGLVAGALIGL 334
Query: 2486 I 2486
I
Sbjct: 335 I 335
>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase. This enzyme
transfers the acyl group to lipoproteins in the
lgt/lsp/lnt system which is found broadly in bacteria but
not in archaea. This model represents one component of
the "lipoprotein lgt/lsp/lnt system" genome property
[Protein fate, Protein modification and repair].
Length = 391
Score = 32.7 bits (75), Expect = 2.7
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 21/105 (20%)
Query: 2213 ALFWVSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSQPALFWVSSYMSVWSNILFNC 2272
LFW+ +SV I F +L+ + A+ FPG ++ ++ + +L
Sbjct: 9 GLFWLGIALSVNGFIAFVAGLLVVGLPALLALFPG------LAAYLLRRLAPFRKVLL-- 60
Query: 2273 AVLINLIVAIFYPFPGNYPSLSSH-FSGFIWSVMLISGVTVMYVP 2316
L L + L S F GF W ++ G +P
Sbjct: 61 -ALPLLWTLAEW--------LRSFGFLGFPWGLI---GYAQSSLP 93
>gnl|CDD|220533 pfam10034, Dpy19, Q-cell neuroblast polarisation. Dyp-19, formerly
known as DUF2211, is a transmembrane domain family that
is required to orient the neuroblast cells, QR and QL
accurately on the anterior-posterior axis: QL and QR are
born in the same anterior-posterior position, but
polarise and migrate left-right asymmetrically, QL
migrating towards the posterior and QR migrating towards
the anterior. It is also required, with unc-40, to
express mab-5 correctly in the Q cell descendants. The
Dpy-19 protein derives from the C. elegans DUMPY mutant.
Length = 637
Score = 32.7 bits (75), Expect = 2.9
Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 44/149 (29%)
Query: 2332 LIYSMGPE------PTLW-----LLGTLTVVMKGIHLISIM----------GNQGTFTKQ 2370
L+Y+ PE T LL + +++ I LIS + + K+
Sbjct: 339 LLYTCAPEFDFLTKETFLRLTKTLLLPIYILVLVIILISALQDVWRNLSRNSLKQRKEKE 398
Query: 2371 INQIFMDPEILYH-LSYVMFCVLGL-------------C-MHPFFYSVLLLDVVYREETL 2415
N + E++YH L ++F +L L C + S L +
Sbjct: 399 ENDEDEEAELVYHVLQTILFTLLALLIMRLKLLWTPHMCVLASLVCSRQLFWLFKI---- 454
Query: 2416 LNVIRSVTRNGRSIILTAVLALILVYMFS 2444
+ + I+ +AV+ LIL M
Sbjct: 455 ----LRLKNHLACIVRSAVVILILASMSV 479
>gnl|CDD|221791 pfam12822, DUF3816, Protein of unknown function (DUF3816). This
family of proteins is functionally uncharacterized but
are likely to be membrane transporters. This family of
proteins is found in bacteria and archaea. Proteins in
this family are typically between 177 and 208 amino acids
in length. A subset of this family is associated with the
TM1506 proteins. In this context, transport through the
channel is predicted to be regulated by the TM1506
protein by either regulating redox potential or
modification of substrates.
Length = 168
Score = 31.8 bits (73), Expect = 3.0
Identities = 13/101 (12%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 2387 VMFCVLGLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSII 2446
+ L + ++ R++T + ++ I+ T + L+ + +
Sbjct: 70 PLANFLPRILFGLIAGLIYK--KLRKKTKKRAVLAI------ILGTILGTLVATLLNLGL 121
Query: 2447 GYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVLNLIFGVII 2487
+ P+ ++ L ++ ++ NLI G+I
Sbjct: 122 ILPLYAKFLGMPISA--IVGALFAAVLLPVLPFNLIKGIIA 160
>gnl|CDD|203244 pfam05400, FliT, Flagellar protein FliT. This family contains
several bacterial flagellar FliT proteins. The flagellar
proteins FlgN and FliT have been proposed to act as
substrate specific export chaperones, facilitating
incorporation of the enterobacterial hook-associated
axial proteins (HAPs) FlgK/FlgL and FliD into the growing
flagellum. In Salmonella typhimurium flgN and fliT
mutants, the export of target HAPs is reduced,
concomitant with loss of unincorporated flagellin into
the surrounding medium.
Length = 82
Score = 30.0 bits (68), Expect = 3.0
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 2574 RLRAMSLAADEGEAEQIELRSLQSQLETTQFLVTNLSQQLSELRDQMTEQRKQRQ 2628
RLR L+ E E ++ LR + L + L +L EL + + R+Q++
Sbjct: 26 RLREAPLSPPESEEKRELLRRI---LANDAEIRALLQPRLDELSQLLGQARRQKK 77
>gnl|CDD|203446 pfam06428, Sec2p, GDP/GTP exchange factor Sec2p. In Saccharomyces
cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p,
which is required for vesicular transport at the
post-Golgi stage of yeast secretion.
Length = 90
Score = 30.0 bits (68), Expect = 3.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 2581 AADEGEAEQIELRSLQSQLETTQFLVTNLSQQLSELRDQM 2620
A E EA +I+ L+ QL+ + L+ +L QL EL+ +
Sbjct: 42 ARREREAVEIKNEKLEEQLKEKETLLDSLQAQLKELKQVL 81
>gnl|CDD|185020 PRK15060, PRK15060, L-dehydroascorbate transporter large permease
subunit; Provisional.
Length = 425
Score = 32.3 bits (73), Expect = 3.6
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 2400 FYSVLLLDVVYRE---ETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKDDFL 2456
FY++ + V+YRE TL +V+ + + ++ A + ++ +I D L
Sbjct: 246 FYALFVAVVIYREMTFSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLL 305
Query: 2457 EPLFVARVIYDLLFFFIVIIIVLNLIFGVIID 2488
+PL + FIVI++ + ++ G+++D
Sbjct: 306 QPL-----VDSPRLLFIVIMVAI-MVVGMVMD 331
>gnl|CDD|224899 COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases
[General function prediction only].
Length = 190
Score = 31.7 bits (72), Expect = 3.7
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 2216 WVSSYMSV----WSNILFNCAVLINLIVAIFYPFPGNYPSQPALFWVSSYMSVWSNILFN 2271
+S Y+ + +++ L AV + L+ + + F P + ++ V+S+IL +
Sbjct: 55 DISLYIRLGHRGFTHSLLFAAVALLLLGLLLFLF--FLPLIFKDLLLGLFLGVFSHILLD 112
Query: 2272 CAVLINLIVAIFYPFPG---------NYPSLSSHFSGFIWSVMLISGVTVMYVPRESGIR 2322
L V + +PF + S I + + GV V G
Sbjct: 113 --ALTTAGVPLLWPFSDTRWSALLLIITFDPVAFLSHLIAILFTVLGVLFGAVFLPKGYL 170
Query: 2323 TLVVSTILRLIY 2334
L++ LR+I
Sbjct: 171 LLLMLWTLRIIV 182
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 32.7 bits (75), Expect = 3.7
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 2567 RNLDWFPRLRAMSLAADEGEAEQI--ELRSLQSQLETTQFLVTNLSQQLSELRDQMTE-Q 2623
R L+ L + L E E++ EL+ + +LE + L ++L ELR +++E +
Sbjct: 223 RELEL--ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280
Query: 2624 RKQRQRIGLLNSTSAYIHNL 2643
+ + L + + I L
Sbjct: 281 EEIEELQKELYALANEISRL 300
>gnl|CDD|213369 cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like
subgroup. A bacterial subgroup of the Escherichia coli
CorA-Salmonella typhimurium ZntB_like (EcCorA_ZntB-like)
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes. This subgroup
includes the Mg2+ transporters Escherichia coli CorA and
Salmonella typhimurium CorA (which can also transport
Co2+, and Ni2+). Structures of the intracellular domain
of Vibrio parahaemolyticus and Salmonella typhimurium
ZntB form funnel-shaped homopentamers, the tip of the
funnel is formed from two C-terminal transmembrane (TM)
helices from each monomer, and the large opening of the
funnel from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and Mrs2p.
Natural variants such as GVN and GIN, such as occur in
some ZntB family proteins, may be associated with the
transport of different divalent cations, such as zinc and
cadmium. The functional diversity of MIT transporters may
also be due to minor structural differences regulating
gating, substrate selection, and transport.
Length = 287
Score = 32.2 bits (74), Expect = 3.7
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 1866 EDVSNLVLNQGSA-LEDMLAEKLERQRDREDQNGLSGKIL--VM--QPVLRFLQ---LLC 1917
E VS VL + LE+ L +L RQ ED N GKI +M Q L FL L
Sbjct: 128 ERVSREVLEENDEDLEEAL-GRLARQ---EDLN---GKIRLCLMDTQRALSFLLRTRRLS 180
Query: 1918 ENHNRDLQNLLR 1929
+ D + +LR
Sbjct: 181 DEQLEDAREILR 192
>gnl|CDD|219819 pfam08395, 7tm_7, 7tm Chemosensory receptor. This family includes a
number of gustatory and odorant receptors mainly from
insect species such as A. gambiae and D. melanogaster.
They are classified as G-protein-coupled receptors
(GPCRs), or seven-transmembrane receptors. They show high
sequence divergence, consistent with an ancient origin
for the family.
Length = 370
Score = 32.4 bits (74), Expect = 3.8
Identities = 26/194 (13%), Positives = 71/194 (36%), Gaps = 24/194 (12%)
Query: 2300 FIWSVMLISGVTVMYVPRESGIRTLVVSTILRLIYSMGPEPTLWLLGTLTVVMKGIHLIS 2359
+ + G+ P E R + RL LL + ++ + L
Sbjct: 3 PLLYYSQLLGLF----PFEFDRRRGRLRWRRRLYL--------LLLLIILFLLVLLVLFL 50
Query: 2360 IMGNQGTFTKQINQIFMDPEILYHLSYVMFCVLGLCMH--PFFYSVLLLDVVYREETLLN 2417
I + + + + + E++Y++ V+ + L + F L ++ LL
Sbjct: 51 ISFIRILYFFRRSALL---EVVYNIQLVLGLLTVLVILLSLLFQRRRLARLL---NELLR 104
Query: 2418 VIRSVTRNGR----SIILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFI 2473
+ R + R G +L L+++ + ++ + + + ++ L ++
Sbjct: 105 LDRRLLRLGSRRNFRRFNRLLLLLLVLIILLLLVSLLGYLLLSQYFLLVLLLLLYLLPYL 164
Query: 2474 VIIIVLNLIFGVII 2487
V+ +++ F +++
Sbjct: 165 VLNLLILQYFLLVL 178
>gnl|CDD|217299 pfam02949, 7tm_6, 7tm Odorant receptor. This family is composed of 7
transmembrane receptors, that are probably drosophila
odorant receptors.
Length = 313
Score = 31.9 bits (73), Expect = 4.1
Identities = 11/86 (12%), Positives = 32/86 (37%), Gaps = 21/86 (24%)
Query: 2216 WVSSYMSVWSNILFNCAVLINLIVAIFY-----------PFPGNYPSQPALFWVS----- 2259
V + + + + + L+ + PFP ++ + ++++
Sbjct: 64 RVRFLLFIIYILAYALFCISALVSMVLSLERGLPLPYYLPFPFDWEASRPPYYIAYIYQV 123
Query: 2260 --SYMSVWSNILFN---CAVLINLIV 2280
++V NI + C+ L+ L++
Sbjct: 124 LGMTVTVLQNIGSDSLFCSFLLFLVL 149
>gnl|CDD|225903 COG3368, COG3368, Predicted permease [General function prediction
only].
Length = 465
Score = 32.4 bits (74), Expect = 4.2
Identities = 54/291 (18%), Positives = 100/291 (34%), Gaps = 63/291 (21%)
Query: 2255 LFWVSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSLSSHFSGFIWSVMLISGVTVMY 2314
L ++ ++ I N +L + Y FP S+ GFI S +L + ++
Sbjct: 176 LIFLVFVFLIYGIIALNVYLLTPIFEPYDYVFPIFNISIYFPAKGFILS-LLYAALSAF- 233
Query: 2315 VPRESGIRTLVVSTILRLIYSMGPEPTLWLLGTLTVVMKGIHLISIMGNQGTF-TKQINQ 2373
L + +L S LL +KG + I +F K
Sbjct: 234 ---------LFLYGNRKLWSS--------LLNPKIGEVKGEYSIKSRSPLLSFLIKDFKL 276
Query: 2374 IFMDPEILYHLSYVMFCVLGLCMHP----------------FFYSVLLLDVVYREETLLN 2417
IF P++L L +F ++ L F S+ + + E ++
Sbjct: 277 IFRKPQLLVLLIMPLFIMMELVYSIAKSFPILYAALVTTIIVFSSITSIMFLVLEGNGIS 336
Query: 2418 VIRSVTRNGRSIILTAVL------------ALILVYMFSIIGYMFFKDDFLEPL----FV 2461
+RS+ + R +++ L LI ++ +I ++ F L L F
Sbjct: 337 FLRSLPLSKRWFLISKGLLIAVISIALLLTVLIKAFINNINSFLLFFPLVLYFLVSSLFS 396
Query: 2462 ARVIY---------DLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQQKELI 2503
R + +L F ++I+++N I ++ A S LI
Sbjct: 397 MRRLSEKINDADTPNLGSFGGIVILLVNFIAVIV--GKAPFFSLSLPVSLI 445
>gnl|CDD|173920 cd02169, Citrate_lyase_ligase, Citrate lyase ligase. Citrate lyase
ligase, also known as [Citrate (pro-3S)-lyase] ligase, is
responsible for acetylation of the
(2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A)
prosthetic group of the gamma subunit of citrate lyase,
converting the inactive thiol form of this enzyme to the
active form. The acetylation of 1 molecule of
deacetyl-citrate lyase to enzymatically active citrate
lyase requires 6 molecules of ATP. The
Adenylylyltranferase activity of the enzyme involves the
formation of AMP and and pyrophosphate in the acetylation
reaction.
Length = 297
Score = 31.9 bits (73), Expect = 4.4
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 25/114 (21%)
Query: 978 NETVSIGNRTIDLELIGTQAEGIFGNSTECEALDLDGHGGRTFLRVLLHLAMHDYPALVS 1037
+ TV I + ELI T I GN +C A+ G L+++ L Y
Sbjct: 5 DYTVGIFD--DAGELIATG--SIAGNVLKCVAVCPKYQGEGLALKIVSELINKAYEE--- 57
Query: 1038 GALHL----------LFRHFSQRQEVLQAFKQLVNAGEDVLVFYNDKSSFQQFI 1081
G HL FR FK+L NA ++ ++ N K + ++
Sbjct: 58 GIFHLFLFTKPKNAKFFRGL--------GFKELANASDEAVLLENGKPGIEDYL 103
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 32.2 bits (74), Expect = 4.8
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 2425 NGRSIILTA-VLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVLNLIF 2483
NG S+I+ A ++A + +F IIG + FL LF+ LL + + I+ +++
Sbjct: 182 NGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILFL------LLLVLLTLAIIFLVVY 235
>gnl|CDD|236831 PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.
Length = 695
Score = 32.2 bits (74), Expect = 5.0
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 1031 DYP---ALVSGALHLLFRHFSQRQ---EVLQAFKQLVNAGEDVL 1068
DY AL AL L F+ F+QR E +QAF+Q V G + L
Sbjct: 251 DYSTVTALKLTALRLAFKQFAQRDKDDEQMQAFRQFVAEGGESL 294
>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase;
Validated.
Length = 666
Score = 32.0 bits (74), Expect = 5.1
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 2427 RSIILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVII-IVLNLIFGV 2485
R +I+TAVL+++L Y Y D L F V+I +V+ + G+
Sbjct: 271 RGLIVTAVLSIVLTY---FATYWLLGDGADG-------FTWLNLFGAVLIGLVVGALIGL 320
Query: 2486 IIDTF 2490
I + +
Sbjct: 321 ITEYY 325
>gnl|CDD|110745 pfam01769, MgtE, Divalent cation transporter. This region is the
integral membrane part of the eubacterial MgtE family of
magnesium transporters. Related regions are found also in
archaebacterial and eukaryotic proteins. All the
archaebacterial and eukaryotic examples have two copies
of the region. This suggests that the eubacterial
examples may act as dimers. Members of this family
probably transport Mg2+ or other divalent cations into
the cell. The alignment contains two highly conserved
aspartates that may be involved in cation binding
(Bateman A unpubl.).
Length = 135
Score = 30.4 bits (69), Expect = 5.3
Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 2415 LLNVIRSVTRNGRSIILTAV-LALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFI 2473
+ ++ + + + +L +V + +L + + +FF +A + +
Sbjct: 31 PKDRLKVLLKELSTGLLLSVVVGALLGVVAVLFAGIFFFILEGGATLLAFFV----ASSL 86
Query: 2474 VIIIVLNLIFGVII 2487
+VL I GV+I
Sbjct: 87 FASLVLATILGVLI 100
>gnl|CDD|181085 PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit
D; Reviewed.
Length = 496
Score = 31.8 bits (73), Expect = 5.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 2274 VLINLIVAIFYPFPGNYPSLSSHFSGFIWSVMLISGVTVMYVPRESGIRTL 2324
+LI +I AI F G P + + + + L++ + ++ + GI+TL
Sbjct: 10 ILIPVITAILLIFLGKRPIIQRYVALIGSLLTLVAAIILVANVYKHGIQTL 60
>gnl|CDD|233011 TIGR00529, AF0261, integral membrane protein, TIGR00529 family. This
protein is predicted to have 10 transmembrane regions.
Members of this family are found so far in the Archaea
(Archaeoglobus fulgidus and Pyrococcus horikoshii) and in
a bacterial thermophile, Thermotoga maritima. In
Pyrococcus, the gene is located between nadA and nadB,
two components of an enzyme involved in de novo synthesis
of NAD. By PSI-BLAST, this family shows similarity (but
not necessarily homology) to gluconate permease and other
transport proteins [Hypothetical proteins, Conserved].
Length = 387
Score = 31.7 bits (72), Expect = 5.4
Identities = 12/69 (17%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 2429 IILTAVLAL----ILVYMFSI------IGYMFFKDDFLEPLFVARVIYDLLF--FFIVII 2476
++++A+ + + + +F + +G+ FF L L R ++D F + I+I+
Sbjct: 154 VLVSALSGIHPGKVSLTLFPVFAIAFFLGWFFFNGKQLPCLSKPRNLFDSFFNLYPIIIV 213
Query: 2477 IVLNLIFGV 2485
+ +++ +
Sbjct: 214 LGTSVLILL 222
>gnl|CDD|217705 pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members
of this family are predicted integral membrane proteins
of unknown function. They are about 350 amino acids long
and contain about 6 transmembrane regions. They are
predicted to be permeases although there is no
verification of this.
Length = 354
Score = 31.5 bits (72), Expect = 5.9
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2418 VIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIII 2477
+ S + ++ A+L L Y+ +G ++ L P+ A + +LLF + + +
Sbjct: 293 GLGSPRSGRGAGLVLAILLGFLYYVLLFLGEALGENGVLPPILAA-WLPNLLFLLLGLYL 351
Query: 2478 VLN 2480
+L
Sbjct: 352 LLR 354
>gnl|CDD|224220 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and
conversion].
Length = 415
Score = 31.8 bits (73), Expect = 6.1
Identities = 46/260 (17%), Positives = 94/260 (36%), Gaps = 52/260 (20%)
Query: 2259 SSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSLSSHFSGFI--WSVM--------LIS 2308
S +S++ +L +++ ++V +F P G L FI ++ L+
Sbjct: 3 SKKLSLYLQVLI--GLILGILVGLFLPELGAAIYLKPLGDIFIKLIKMIIIPLVFFTLVL 60
Query: 2309 GVTVMYVPRESG-------IRTLVVSTILRLI-----YSMGPEPTLWLLGTLTVVMKGIH 2356
G+ + ++ G I LV +T+ I + P + + T+
Sbjct: 61 GIASLGDLKKLGRLGGKTLIYFLVTTTLAIAIGLVVANVLQPGAGI-NIDPATLDTGAES 119
Query: 2357 LISIMGN-QGTFTKQINQIFMDPEILYHLSYVMFCVL-GLCMHPFFYSVLLLDVVYREET 2414
+SI+ I + + L + F +L GL L +
Sbjct: 120 EVSILDFLLDIIPTNIFGALAEGNV---LQILFFAILFGL--------ALAALGEKGKPP 168
Query: 2415 LLNVIRSVTRNGRSIILTAVLALILVY----MFSIIGYMFFKDDF-----LEPLFVARVI 2465
+ N+ S++ + V ++ +F ++ + K F L L +A +
Sbjct: 169 VENLFESLSE-----AMFKVTNFVMRLAPIGVFGLMAFTVAKYGFGSLLSLGKLVLAVYL 223
Query: 2466 YDLLFFFIVIIIVLNLIFGV 2485
LLF F+V+ ++L L+ G
Sbjct: 224 GLLLFVFVVLGLLLKLLSGF 243
>gnl|CDD|226458 COG3949, COG3949, Uncharacterized membrane protein [Function
unknown].
Length = 349
Score = 31.5 bits (72), Expect = 7.1
Identities = 25/169 (14%), Positives = 56/169 (33%), Gaps = 29/169 (17%)
Query: 2324 LVVSTILRLIYSMGPEPTLWLLGTLTVVMKGIHLISIMGNQGTFTKQINQIFMDP----E 2379
+ V+ ++ L M + G + ++ G+ + + N +++
Sbjct: 193 VAVAVLVPLGGRMESRKVSGIGGLIGGLILGV--LLFLINLSLIA-LYDKVVNYDIPLLT 249
Query: 2380 ILYHLSYVMFCVLGLCMHPFFYSVLLLDVV---YREETLLNVIRSVTRNGRSIILTAVLA 2436
I + S ++ GL M + + V Y + L R I+ A++
Sbjct: 250 IAKNFSPLI----GLVMSVIIWLEIYTTTVGLIYGLASRLTSFFPR----RYWIIAAII- 300
Query: 2437 LILVYMFSIIGYMFFKD--DFLEPLFVARVIYDLLFFFIVIIIVLNLIF 2483
L++ Y S G F + L P+ + + ++ I
Sbjct: 301 LVIAYPLSFFG---FINLIAKLYPILGY-----VGLLILFAVLYKYPIK 341
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter
Family (TC 2.A.2) GPH:cation symporters catalyze uptake
of sugars in symport with a monovalent cation (H+ or
Na+). Members of this family includes transporters for
melibiose, lactose, raffinose, glucuronides, pentosides
and isoprimeverose. Mutants of two groups of these
symporters (the melibiose permeases of enteric bacteria,
and the lactose permease of Streptococcus thermophilus)
have been isolated in which altered cation specificity is
observed or in which sugar transport is uncoupled from
cation symport (i.e., uniport is catalyzed). The various
members of the family can use Na+, H+ or Li, Na+ or Li+,
H+ or Li+, or only H+ as the symported cation. All of
these proteins possess twelve putative transmembrane
a-helical spanners [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 437
Score = 31.5 bits (72), Expect = 7.1
Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 54/204 (26%)
Query: 2374 IFMDPEILYHLSYVMFCVLGLCMHPFFYSVLLLDVVY-----------REETLLNVIRSV 2422
+F P+ V + + + FYS +++ Y RE L+ R
Sbjct: 87 LFTTPDFSATGKLVYAYITYILLG-LFYS--FVNIPYWSLVPAITLDPRERESLSTFRRF 143
Query: 2423 TRNGRSIILTAVLALILVYMFSI----IGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIV 2478
+L AV+ L LV F G+ F L +A L + +II
Sbjct: 144 GATL-GGLLVAVIVLPLVSYFGGGDDKFGWFMFA------LVLA------LIGVVSLIIC 190
Query: 2479 LNLIFGV----------------IIDTFADLRSEKQQKELILKNTCFICGLN-RSAFDNK 2521
FG + F L Q L L + N ++
Sbjct: 191 F---FGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGV--- 244
Query: 2522 TVSFEEHITCEHNMYHYLYFIVLV 2545
V + ++ + ++ Y+ I +
Sbjct: 245 QVYYFTYVLGDPELFSYMGSIAIG 268
>gnl|CDD|225786 COG3247, HdeD, Uncharacterized conserved protein [Function unknown].
Length = 185
Score = 30.7 bits (70), Expect = 7.3
Identities = 36/149 (24%), Positives = 52/149 (34%), Gaps = 44/149 (29%)
Query: 2213 ALFWVSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSQPALFWVSSYMSVWSNILFNC 2272
+ F S S W +L ++ I+A F P G AL ++ I F
Sbjct: 65 SAFGNRSDNSFWPLLLSGILSILLGILAGFNPGLG------ALV-----LTYLIAIWFIA 113
Query: 2273 AVLINLIVAIFY-PFPGNYPSLSSHFSGFIWSVMLISGVTVMYVPRESGIRTLVVSTILR 2331
+ ++ ++VA PG W M+ISG V+ I
Sbjct: 114 SGILRIVVAFRLRSLPG-------------WWWMIISG---------------VLGIIAG 145
Query: 2332 LIYSMGPEPTLWLLGTLTVVMKGIHLISI 2360
LI P + W+LG L GI LI
Sbjct: 146 LILLFNPVASAWILGLLL----GIELIFQ 170
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 31.5 bits (72), Expect = 7.3
Identities = 41/258 (15%), Positives = 86/258 (33%), Gaps = 48/258 (18%)
Query: 2256 FWVSSYMSVWSNILFNCAVLINLIVAIFYPFPGN-YPSLSSHFSG-----FIWSVMLIS- 2308
FW + + + L ++L+ L + P SL + G I +
Sbjct: 39 FWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFAL 98
Query: 2309 -GVTVMYVPRESGIRTLVVSTILRLIYSMGPEPTLWLLGTLTVVMKGIHLISIMGNQGTF 2367
G+ V Y+ GI L+ S + L L V+ +S +G
Sbjct: 99 YGLLVAYI---VGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLA----FLSWLGTLAVL 151
Query: 2368 TKQINQIFMDPEILYHLSYVMFCVLGLCMHPFFYSVLLLDVVYREE----TLLNVIRSVT 2423
+I + + +++Y +L + + P + L + + LL I
Sbjct: 152 --KITSLLVFGKVIY------LVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAI---- 199
Query: 2424 RNGRSIILTAVLALILVY---MFSIIGYM--FFKDDFLEPLFVARVIYDLLFFFI---VI 2475
+ + + + + S++ YM K + + + +I +L+ + V
Sbjct: 200 ----PVFVFS-----FGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVF 250
Query: 2476 IIVLNLIFGVIIDTFADL 2493
+L+FG I+
Sbjct: 251 GCFGSLVFGNILAAKEQN 268
>gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional.
Length = 398
Score = 31.3 bits (71), Expect = 7.3
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 1572 EMMAIDS--EYGEKVKEAYINFLNHCYIDTEVEMKEIYASNHMWSLFE 1617
E++AI+ E G+K+K+ L+ C+I T+ +K I SN W FE
Sbjct: 182 EVVAIERALEAGKKLKKP----LHICHISTKDGLKLILKSNLPWVSFE 225
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 31.4 bits (71), Expect = 7.5
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 2591 ELRSLQSQLETTQFLVTNLSQQLSELRDQMTEQRKQRQRIGLLNSTSAYIHNLPIQVLKF 2650
+ R Q +LE ++ Q LRD++ E +K I L +AY+ L F
Sbjct: 189 QYRLYQQELEEVYNVLRLEGQIQQSLRDRVVETQKLNSTIQLDQQHTAYLDLLANADALF 248
Query: 2651 VSVEGD 2656
+ V G
Sbjct: 249 IQVLGQ 254
>gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 113
Score = 29.4 bits (67), Expect = 7.9
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 2429 IILTAVLALILVYMFSIIGYMFFKDDFL------------EPLFVARVIYDLLFFFIVII 2476
I++ ++ L++ + I+ + K + +P AR+ + L FF I II
Sbjct: 2 ILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAII 61
Query: 2477 IVLNLIFGVII 2487
LIF V I
Sbjct: 62 F---LIFDVEI 69
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number of
Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 31.6 bits (72), Expect = 8.0
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 44/192 (22%)
Query: 1418 SASQRLYVE--NCIRTLTEIAKGRSIAIPSDLESQVSAMFNKTTLLSR--------QTSR 1467
AS R+YV+ + +R L KG IA+ +++ ++ M TLLSR
Sbjct: 40 EASARVYVDTQSVLRPLL---KG--IAVTPNVDQKIRIM--SRTLLSRPNLEKVIRMLDL 92
Query: 1468 WLQAAKSPK-MERSQSQLMRLDRSI-IEGLQDIVLL-LEDQ----LKPLVQSELSLLVDI 1520
L A KSP +E ++L + + SI + G ++ + ED+ K +VQ+ L++ V+
Sbjct: 93 DLGA-KSPAQLEALITKLRK-NISISLAGRDNLFTISYEDKDPELAKDVVQTLLTIFVE- 149
Query: 1521 LYRPELLFPSGTEARKRCEGGG---FIRRLIKHTEKLLEEKEEKLCVKVLRTLR-EMMAI 1576
T KR + FI IK EK LE E +L K + ++
Sbjct: 150 ----------ETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRL--KAFKQENGGILPD 197
Query: 1577 DS-EYGEKVKEA 1587
+Y ++ EA
Sbjct: 198 QEGDYYSEISEA 209
>gnl|CDD|200378 TIGR04127, flavo_near_exo, exosortase F-associated protein. Members
of this protein family are always found next to an
exosortase/archaeosortase-like protein, and occur so far
only in the flavobacteria, within the Bacteroidetes.
Members do not have an obvious PEP-CTERM-like C-terminal
protein sorting domain.
Length = 136
Score = 29.9 bits (68), Expect = 8.1
Identities = 15/76 (19%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 2400 FYSVLLLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKDDFLEPL 2459
S+L++ ++++++ ++ S IL V+ +IL+ +F I+ + F ++++L
Sbjct: 61 LLSLLIIYILFKDKGIIKF---------SAILYLVVFVILIILFYILLHDFEEENYLLLF 111
Query: 2460 FVARVIYDLLFFFIVI 2475
+V R + +F +++
Sbjct: 112 YVRRFLIQPIFVLLLL 127
>gnl|CDD|214456 MTH00203, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 112
Score = 29.5 bits (67), Expect = 8.2
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 2428 SIILTAVLALILVYMFSIIGYMFFKDDFL-----------EPLFVARVIYDLLFFFIVII 2476
I+L ++AL+L + I + K + +PL AR+ + L FF + +
Sbjct: 3 LIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALS 62
Query: 2477 IVL 2479
+L
Sbjct: 63 FLL 65
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and
chromosome partitioning].
Length = 420
Score = 31.2 bits (71), Expect = 8.4
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 2591 ELRSLQSQLETTQFLVTNLSQQL----SELRDQMTEQRKQRQRIGLL 2633
L+ T + + ++ +EL ++EQR Q+ ++ L
Sbjct: 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQL 204
>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl
transferase [Posttranslational modification, protein
turnover, chaperones].
Length = 699
Score = 31.3 bits (71), Expect = 8.4
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 222 WKVTLFMEHRENQEEILKGGDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATS 281
W + L E+ Q E LK G VRL H K L + K S +
Sbjct: 348 WLIELSDENAT-QIEPLKDGQSVRLRHKYTGKNLHFHDVKPPVS---GNQYEVSGYGDSF 403
Query: 282 S---KALWEIEVVQHDPCRGGAG-H-WNCLFRFKHLATGHYLA 319
K W IE+V+ + H FR H+ TG YLA
Sbjct: 404 EGDEKDDWIIEIVKDEANEDQERIHPLETKFRLYHVLTGCYLA 446
>gnl|CDD|214414 MTH00063, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 522
Score = 31.4 bits (72), Expect = 8.8
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 2223 VWSNILFNCAVLINLIVAIF----YPFPGNYPSQPALFWVSSYMSVWSNILFNCAVLINL 2278
V+S+IL+ L L + + PF G + S+ L SS+ SV N+ V++ +
Sbjct: 305 VYSSILYGSWNLFYLFLLVLGLSGVPFIGVFFSKHFLL--SSFSSVVFNVSLLLVVILCV 362
Query: 2279 IVAIFYPF 2286
++ Y F
Sbjct: 363 FLSYLYSF 370
>gnl|CDD|224610 COG1696, DltB, Predicted membrane protein involved in D-alanine
export [Cell envelope biogenesis, outer membrane].
Length = 425
Score = 31.2 bits (71), Expect = 9.8
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 22/134 (16%)
Query: 2363 NQGTFTKQINQIFMDPEI--LYHLSYVMFCVLGLCMHPFFYSVLLLDVVYREETLLNVIR 2420
+ QIN + ++ + L+H F + GL +H + L Y++
Sbjct: 300 RKKILRTQINFLLINFLLMGLWHGLGWTFILWGL-LHGVLLVLYRLISRYKK-------- 350
Query: 2421 SVTRNGRSIILTAVLALILVYMFSIIGYMFFK----DDFL---EPLFVARVIYDLLFFFI 2473
LT +L +I+ + F +G++ F+ + LF + F
Sbjct: 351 ---IKNPGNRLTILLMIIITFFFVCLGWLIFRSLLPGLAFTVVKALFGLSLAVSSFFAVQ 407
Query: 2474 VIIIVLNLIFGVII 2487
+VL I+
Sbjct: 408 ADFLVL-ACAKSIM 420
>gnl|CDD|222175 pfam13493, DUF4118, Domain of unknown function (DUF4118). This
domain is found in a wide variety of bacterial signalling
proteins. It is likely to be a transmembrane domain
involved in ligand sensing.
Length = 103
Score = 29.1 bits (66), Expect = 9.8
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 2434 VLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVL 2479
+ ++L + +G + F D LE IY + V+++ L
Sbjct: 3 LETIVLFLLVLALGLLLFPSDPLE------NIYGFPYLLAVLLVAL 42
>gnl|CDD|216594 pfam01594, UPF0118, Domain of unknown function DUF20. This
transmembrane region is found in putative permeases and
predicted transmembrane proteins it has no known
function. It is not clear what source suggested that
these proteins may be permeases and this information
should be treated with caution.
Length = 327
Score = 30.7 bits (70), Expect = 10.0
Identities = 11/65 (16%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 2429 IILTAVLALILVYMFSIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVLNLIFGVIID 2488
+++ ++AL+L Y+ + + F K + ++ L F + ++++ L+ ++I
Sbjct: 21 LLVPLLIALVLAYLLNPV-VRFLKRRGIPRSLAILLVL--LLFLVALVLLGLLLIPLLII 77
Query: 2489 TFADL 2493
L
Sbjct: 78 QLTQL 82
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.394
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 135,719,457
Number of extensions: 13714979
Number of successful extensions: 14069
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13911
Number of HSP's successfully gapped: 176
Length of query: 2693
Length of database: 10,937,602
Length adjustment: 114
Effective length of query: 2579
Effective length of database: 5,881,246
Effective search space: 15167733434
Effective search space used: 15167733434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.0 bits)