RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy827
(2693 letters)
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core,
domain 1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 280 bits (717), Expect = 5e-87
Identities = 144/200 (72%), Positives = 161/200 (80%), Gaps = 17/200 (8%)
Query: 240 GGDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEIEVVQHDPCRGG 299
GGDVVRLFHAEQEKFLT DE++KKQHVFLRTTGR SATSATSSKALWE+EVVQHDPCRGG
Sbjct: 1 GGDVVRLFHAEQEKFLTCDEHRKKQHVFLRTTGRQSATSATSSKALWEVEVVQHDPCRGG 60
Query: 300 AGHWNCLFRFKHLATGHYLAAEIDT-------------DETMDQMRSKLRDHHGGSVYHL 346
AG+WN LFRFKHLATGHYLAAE+D D D RS+LR+ VY L
Sbjct: 61 AGYWNSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASRSRLRNAQEKMVYSL 120
Query: 347 VSVPHPNEISSLFELDPTTLTRADSLVPQSSYVRLHHLCTNTWVHSTSIPIDKDEEKP-- 404
VSVP N+ISS+FELDPTTL DSLVP++SYVRL HLCTNTWVHST+IPIDK+EEKP
Sbjct: 121 VSVPEGNDISSIFELDPTTLRGGDSLVPRNSYVRLRHLCTNTWVHSTNIPIDKEEEKPVM 180
Query: 405 --VGCAPLKEDKEAFALIPV 422
+G +PLKEDKEAFA++PV
Sbjct: 181 LKIGTSPLKEDKEAFAIVPV 200
>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 167
Score = 235 bits (600), Expect = 8e-72
Identities = 115/171 (67%), Positives = 141/171 (82%), Gaps = 4/171 (2%)
Query: 423 SPTEVRDLDFANDACKVLAANSSKLENGSISQNERRAVTSLLQDIVYFIAGLENEQNKSE 482
SP EVRDLDFANDA KVL + + KLE G+I+QNERR+VT LL+D+VYF+ G N + +
Sbjct: 1 SPAEVRDLDFANDASKVLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTN--SGQD 58
Query: 483 ALELSVVNPNRDRQKLLREQYILKQLFKILQAPFLEIVEGEGPFLRIEELNDPKNAPYKY 542
LE+ PNR+RQKL+REQ ILKQ+FK+LQAPF + G+GP LR+EEL D ++AP+++
Sbjct: 59 VLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDC--GDGPMLRLEELGDQRHAPFRH 116
Query: 543 MFRLCYRILRLSQQDYRKNQEYIAKHFGFMQKQIGYDILAEDTITALLHNN 593
+ RLCYR+LR SQQDYRKNQEYIAK FGFMQKQIGYD+LAEDTITALLHNN
Sbjct: 117 ICRLCYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYDVLAEDTITALLHNN 167
Score = 103 bits (259), Expect = 1e-25
Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 23/134 (17%)
Query: 1232 EYKKIQQILIRMNKLCISRATPLSPV------KPRKHEQRLLRNVGVHTIVLDLLQVPYD 1285
E + + ++L + V KP + Q+L+R + + LLQ P+
Sbjct: 34 ERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFT 93
Query: 1286 MKEDIRM--------------NELMRLAHQFLQNFCLGNQQNQVLLHKHLDLFL---NPG 1328
D M + RL ++ L++ ++NQ + K
Sbjct: 94 DCGDGPMLRLEELGDQRHAPFRHICRLCYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYD 153
Query: 1329 IREAQTVCSVFQDN 1342
+ T+ ++ +N
Sbjct: 154 VLAEDTITALLHNN 167
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 178
Score = 87.3 bits (216), Expect = 8e-20
Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 12/152 (7%)
Query: 173 STGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEV----NVVNSSTSWKVTLFM 228
S D V + N G + LH + + + G + V N + ++ W++ +
Sbjct: 2 SDEDFVTCYSVLKFINANDGSR-LH-SHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPAL 59
Query: 229 EHRENQEEILKGGDVVRLFHAEQEKFLTMDEYKKKQHVFLRTTGRTSATSATSSKALWEI 288
+ N+ + +K GD +RL H FL + + + + + + W +
Sbjct: 60 NAKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTV 119
Query: 289 EVVQHDPCRGGAGHWNCLFRFKHLATGHYLAA 320
C G + F+ +H TG YL+
Sbjct: 120 I------CNGDEWLESEQFKLRHAVTGSYLSL 145
Score = 46.5 bits (110), Expect = 8e-06
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 99 EIEKKQNESENKKLLGMVVQYGSVVQLLHLKSNKFLTVNKRLPALLEKNAMRVYLDANGN 158
+I N N+ G ++ G ++L HL + FL + L +++ + A G+
Sbjct: 54 QIFPALNAKCNR---GDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQE---VSAFGS 107
Query: 159 EGSWFYILPFYKLRSTGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDN-PGCKEVNVV- 216
E + + GD + ++ + G L + + G +EV
Sbjct: 108 EAESDTGDDW-TVICNGDEWLESEQFKLRHAVTG-SYLS-LSGQQFGRPIHGQREVVGTD 164
Query: 217 --NSSTSWKVTLFMEH 230
++WKV E
Sbjct: 165 SITGGSAWKV---AEG 177
Score = 36.9 bits (85), Expect = 0.014
Identities = 27/186 (14%), Positives = 65/186 (34%), Gaps = 15/186 (8%)
Query: 107 SENKKLLGMVVQYGSVVQLLHLKSNKFLTVNK-RLPALLEKNAMRVYLDANGNEGSWFYI 165
S+ V SV++ ++ L + + + + ++ +++ W
Sbjct: 2 SDEDF-----VTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIF 56
Query: 166 LPFYKLRSTGDNVVVGDKVIMNPVNAGQQVLHVAANYELPDNPGCKEVNVVNSSTSWKVT 225
+ GD + GDK+ + + + ++ P + +EV+ S
Sbjct: 57 PALNAKCNRGDAIKCGDKIRL--KHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTG 114
Query: 226 LFMEHRENQEEILKGGDVVRLFHAEQEKFLTM--DEYKKKQHVFLRTTGRTSATSATSSK 283
N +E L+ + +L HA +L++ ++ + H G S T +
Sbjct: 115 DDWTVICNGDEWLE-SEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGGS--- 170
Query: 284 ALWEIE 289
W++
Sbjct: 171 -AWKVA 175
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 36.5 bits (83), Expect = 0.043
Identities = 35/321 (10%), Positives = 85/321 (26%), Gaps = 31/321 (9%)
Query: 2216 WVSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSQPALFWVSSYMSVWSNI-LFNCAV 2274
W S ++ + +L IN + + + N L N AV
Sbjct: 35 WQFSMLAAYMFLLIMLGFPINFLTLY-------------VTVQHKKLRTPLNYILLNLAV 81
Query: 2275 LINLIVAIFYPFPGNYPSLSSHFSGFIWSVML------ISGVTVMYVPRESGIRTLVVST 2328
+V + G + + + + + R +VV
Sbjct: 82 ADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCK 141
Query: 2329 ILRLIYSMGPEPTLWLLGT----LTVVMKGIHLISIMGNQGTFTKQINQIFMDPEILYHL 2384
+ + + T L + S +G + E +
Sbjct: 142 PMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNE 201
Query: 2385 SYVMFCVLGLCMHPFF-YSVLLLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMF 2443
S+V++ + + P +V+ + + ++ + +I+V F
Sbjct: 202 SFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAF 261
Query: 2444 SIIGYMFFKDDFLEPLFVARVIYDLLFFFIVIIIVLNLIFGVIIDTFADLRSEKQQKELI 2503
I + F + + ++ +I +++ + ++
Sbjct: 262 LICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIM---MNKQFRNCMV 318
Query: 2504 LKNTCFICGLNRSAFDNKTVS 2524
T CG N D + +
Sbjct: 319 ---TTLCCGKNPLGDDEASTT 336
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 36.7 bits (84), Expect = 0.047
Identities = 56/441 (12%), Positives = 123/441 (27%), Gaps = 58/441 (13%)
Query: 2101 IYILCHQLAQHNKDLA-----TLLKPCGTYTDPKMIQALEYYASHTAQIEIVRQDRTLEQ 2155
Y+ L N +L + + M AL A+ V E
Sbjct: 86 GYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIAN-------VGSREMAEA 138
Query: 2156 IVFPIPEICEYLTEDTKSKVYQTA--------ERDDQGSKVSDFFERTEDMFSEMKWQKK 2207
IP+I + DT V Q+A + D+ R + ++
Sbjct: 139 FAGEIPKIL--VAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVV 196
Query: 2208 LRGQPALFWVSSYMS--VWSNILFNCAVLINLIVA--------IFYPFPGNYPSQPALFW 2257
+ ++ +++ + L ++ + +Y P + S L
Sbjct: 197 TAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRL 256
Query: 2258 VSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSLSSHFSGFIWSVMLISGVTVMYVPR 2317
+ Y + L + I S S +V+ + +++
Sbjct: 257 LQCYPPPEDPAVRG--RLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS 314
Query: 2318 ESGIRTLVVSTILRLIYSMGPEPTLWLLGTLTVVMKGIHLISIMGNQGTFTKQINQIFMD 2377
E + + + + + L ++ L S + I +
Sbjct: 315 EPNLLVRACNQLGQFLQHRETNLRYLALESM------CTLASSEFSHEAVKTHIETVINA 368
Query: 2378 P---EILYHLSYVMFCVLGLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIILTAV 2434
+ + + +C ++ +L+ + + + R I+ V
Sbjct: 369 LKTERDVSVRQRAVDLLYAMCDRSNAQQIV--------AEMLSYLETADYSIREEIVLKV 420
Query: 2435 LALILVYMFSIIGYMFFKDDFLEPLF---VARVIYDLLFFFIVIIIVLNLIFGVIIDTFA 2491
L Y Y+ D + L V ++ + I I+I + + G T
Sbjct: 421 AILAEKYAVDYTWYV----DTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVF 476
Query: 2492 DLRSEKQQKELILKNTCFICG 2512
+ E ++K +I G
Sbjct: 477 EALQAPACHENLVKVGGYILG 497
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 67
Score = 30.4 bits (69), Expect = 0.38
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 13/51 (25%)
Query: 160 GSWFYIL-------PFY------KLRSTGDNVVVGDKVIMNPVNAGQQVLH 197
++Y+L R +VGD V+ N + L
Sbjct: 11 SGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLM 61
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Length = 180
Score = 32.0 bits (72), Expect = 0.57
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 8/91 (8%)
Query: 2224 WSNILFNCAVLINLIVAIFYPFPGNYPSQP-----ALFWVSSYMSVWSNILFNCAVLINL 2278
I A+L + F S W+ S I ++I
Sbjct: 84 LIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFA 143
Query: 2279 ---IVAIFYPFPGNYPSLSSHFSGFIWSVML 2306
IVA ++ G + +H +G + +
Sbjct: 144 LIWIVAGWFDLFGMSMANGAHIAGLAVGLAM 174
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum
[TaxId: 2242]}
Length = 239
Score = 30.8 bits (69), Expect = 1.7
Identities = 25/229 (10%), Positives = 56/229 (24%), Gaps = 24/229 (10%)
Query: 2255 LFWVSSYMSVWSNILFNCAVLINLIVAIFYPFPGNYPSLSSHFSGFIWSVMLISGVTVMY 2314
++ + +++ ++I L+ Y + L+ L +
Sbjct: 25 VYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLS--GLTVGMIEMPAGHALAGEMVRSQ 82
Query: 2315 VPRESGIRTLVVSTILRLIYSMG-PEPTLWLLGTLTVVMKGIHLISIMGNQGTFTKQINQ 2373
R +L L +L+ + + M L + M +
Sbjct: 83 WGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRWAFY 142
Query: 2374 IFMDPEILYHLSYVMFCVLGLCMHPFFYSVLLLDVVYREETLLNVIRSVTRNGRSIILTA 2433
F + L + + R + +
Sbjct: 143 AI-------------------SCAFFVVVLSALVTDWAASASSAGTAEIFDTLRVLTVVL 183
Query: 2434 VLALILVYMFSIIGYMFFKDDFLEPLF--VARVIYDLLFFFIVIIIVLN 2480
L +V+ + G + V V +F FI++ V N
Sbjct: 184 WLGYPIVWAVGVEGLALVQSVGATSWAYSVLDVFAKYVFAFILLRWVAN 232
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 31.0 bits (69), Expect = 2.0
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 3/117 (2%)
Query: 1178 CCTMGKNVYTEIKCHSLLPLDDIVAMVSHPDCIPEQGSAIDLDIGPPIHADQAEEYKKIQ 1237
V C++ ++ + P C + GS + + + +
Sbjct: 114 HLHGSLRVVRCTSCNNSFEVESAPKIPPLPKC-DKCGSLLRPGVVWAGEMLPPDVLDRAM 172
Query: 1238 QILIRMNKLCISRATPLSPVKPRKHEQRLLRNVGVHTIVLDLLQVPYDMKEDIRMNE 1294
+ + R + + I T V+P +++ G I ++ + P D +
Sbjct: 173 REVERAD-VIIVAGTSAV-VQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRG 227
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 30.0 bits (67), Expect = 4.2
Identities = 6/57 (10%), Positives = 18/57 (31%)
Query: 2574 RLRAMSLAADEGEAEQIELRSLQSQLETTQFLVTNLSQQLSELRDQMTEQRKQRQRI 2630
R M + + + + ++ + ++++LR Q + R
Sbjct: 216 RAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRA 272
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 30.0 bits (67), Expect = 5.1
Identities = 27/257 (10%), Positives = 59/257 (22%), Gaps = 45/257 (17%)
Query: 2261 YMSVWSNILFNCAVLINLIVAIFYPFPGNYPSLSSHFSG----------------FIWSV 2304
+ + I+ L A+ Y YP L +++
Sbjct: 13 VLGFLALIV---GSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQ 69
Query: 2305 MLISGVTVMYVPRESGIR-----------------TLVVSTIL-------RLIYSMGPEP 2340
+ + V RE +R + +L Y
Sbjct: 70 LFAQAIMVYLPARELNMRPNMGLMWLSWWMAFIGLVVAALPLLANEATVLYTFYPPLKGH 129
Query: 2341 TLWLLGTLTVVMKGIHLISIMGNQGTFTKQINQIFMDPEILYHLSYVMFCVLGLCMHPFF 2400
+ LG V+ +SI + + L V+F ++
Sbjct: 130 WAFYLGASVFVL-ST-WVSIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASLGL 187
Query: 2401 YSVLLLDVVYREETLLNVIRSVTRNGRSIILTAVLALILVYMFSIIGYMFFKDDFLEPLF 2460
+L ++ L+ + + + + I Y L
Sbjct: 188 VLEAVLFLLPWSFGLVEGVDPLVARTLFWWTGHPIVYFWLLPAYAIIYTILPKQAGGKLV 247
Query: 2461 VARVIYDLLFFFIVIII 2477
+ F+++
Sbjct: 248 SDPMARLAFLLFLLLST 264
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
influenzae [TaxId: 727]}
Length = 189
Score = 29.0 bits (64), Expect = 5.6
Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 14/119 (11%)
Query: 2214 LFWVSSYMSVWSNILFNCAVLINLIVAIFYPFP--GNYPSQPALFWVSSYMSVWSNILFN 2271
+ + + + + + G A+ ++ LF+
Sbjct: 76 MIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFD 135
Query: 2272 CA------VLINLIVAIFYPFPGNYPSLSSHFSGFIWSVMLISGVTVMYVPRESGIRTL 2324
+L+ + + P G ++H SG I G+ ++ + +L
Sbjct: 136 LPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLI------VGLIWGFIDSKLRKNSL 188
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 123
Score = 28.1 bits (63), Expect = 5.7
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 2485 VIIDTFADLRSEKQQKELILKNTCFI 2510
+ +D F+D+++E+ Q++L N+ +
Sbjct: 65 IYVDNFSDIKNEEIQEKLRELNSIVV 90
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 28.3 bits (63), Expect = 6.0
Identities = 13/75 (17%), Positives = 27/75 (36%)
Query: 2591 ELRSLQSQLETTQFLVTNLSQQLSELRDQMTEQRKQRQRIGLLNSTSAYIHNLPIQVLKF 2650
L + +QL Q V + QQ+ +R ++E + + + +P+ F
Sbjct: 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSF 61
Query: 2651 VSVEGDVKERACDSL 2665
+ E S+
Sbjct: 62 IKAELKDTSEVIMSV 76
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus
[TaxId: 11191]}
Length = 53
Score = 26.2 bits (57), Expect = 8.6
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 1569 TLREMMAI--DSEYGEKVKEAYINFLNHCYIDTEVE 1602
T+ + + S K AY+ L+ C D EV+
Sbjct: 3 TMHSLRLVIESSPLSRAEKAAYVKSLSKCKTDQEVK 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.394
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 9,631,367
Number of extensions: 458372
Number of successful extensions: 1206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1195
Number of HSP's successfully gapped: 30
Length of query: 2693
Length of database: 2,407,596
Length adjustment: 101
Effective length of query: 2592
Effective length of database: 1,020,866
Effective search space: 2646084672
Effective search space used: 2646084672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)