Query psy8270
Match_columns 737
No_of_seqs 321 out of 3592
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 23:08:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0042|consensus 100.0 4.2E-53 9.1E-58 460.0 26.9 437 20-707 45-667 (680)
2 COG0578 GlpA Glycerol-3-phosph 100.0 6.8E-37 1.5E-41 343.7 28.0 204 393-599 106-313 (532)
3 PLN02464 glycerol-3-phosphate 100.0 9.1E-35 2E-39 340.0 31.9 225 396-625 174-404 (627)
4 KOG0042|consensus 100.0 8.5E-34 1.8E-38 309.6 20.3 175 116-336 379-554 (680)
5 PRK11101 glpA sn-glycerol-3-ph 100.0 3.4E-29 7.4E-34 289.6 28.3 196 416-625 116-315 (546)
6 PRK13369 glycerol-3-phosphate 100.0 8E-29 1.7E-33 284.0 30.1 215 400-626 107-325 (502)
7 PRK12266 glpD glycerol-3-phosp 100.0 2.8E-28 6E-33 279.8 31.7 188 429-626 135-326 (508)
8 TIGR03377 glycerol3P_GlpA glyc 99.9 1.8E-23 3.9E-28 240.7 25.0 198 416-625 95-292 (516)
9 PF01266 DAO: FAD dependent ox 99.9 1.1E-22 2.3E-27 219.8 24.3 151 415-575 112-265 (358)
10 PRK11728 hydroxyglutarate oxid 99.9 1.9E-22 4E-27 224.4 26.7 151 416-576 117-271 (393)
11 COG0579 Predicted dehydrogenas 99.9 3.4E-22 7.4E-27 221.3 24.5 159 415-578 118-280 (429)
12 PRK12409 D-amino acid dehydrog 99.9 1.4E-21 3E-26 218.3 29.0 176 415-597 162-340 (410)
13 PRK00711 D-amino acid dehydrog 99.9 1.1E-21 2.5E-26 219.0 21.7 168 415-596 163-334 (416)
14 TIGR01373 soxB sarcosine oxida 99.9 6.5E-21 1.4E-25 212.7 26.7 170 415-597 142-318 (407)
15 TIGR03364 HpnW_proposed FAD de 99.9 3.9E-20 8.6E-25 203.2 25.8 113 415-541 109-223 (365)
16 COG0578 GlpA Glycerol-3-phosph 99.9 1.9E-20 4.1E-25 211.2 21.4 205 113-375 314-524 (532)
17 TIGR01320 mal_quin_oxido malat 99.9 6.3E-20 1.4E-24 209.3 25.6 158 418-576 141-314 (483)
18 PLN02464 glycerol-3-phosphate 99.9 2.1E-20 4.6E-25 219.3 21.1 212 117-381 387-613 (627)
19 TIGR03329 Phn_aa_oxid putative 99.8 1.4E-19 3E-24 205.7 24.2 110 416-540 151-260 (460)
20 PTZ00383 malate:quinone oxidor 99.8 1.9E-19 4.2E-24 205.3 24.4 154 415-580 167-342 (497)
21 PRK11259 solA N-methyltryptoph 99.8 6E-19 1.3E-23 194.2 26.8 150 415-576 113-268 (376)
22 PRK13339 malate:quinone oxidor 99.8 2.9E-19 6.2E-24 203.4 21.7 125 415-540 143-276 (497)
23 TIGR01377 soxA_mon sarcosine o 99.8 2E-18 4.4E-23 190.3 27.3 115 415-539 109-224 (380)
24 KOG2844|consensus 99.8 8.4E-19 1.8E-23 196.3 20.1 150 415-576 151-303 (856)
25 PRK05257 malate:quinone oxidor 99.8 5.5E-18 1.2E-22 193.7 23.9 125 416-541 143-276 (494)
26 PRK01747 mnmC bifunctional tRN 99.8 6.9E-18 1.5E-22 200.0 22.9 159 417-597 377-538 (662)
27 COG0665 DadA Glycine/D-amino a 99.8 2.9E-17 6.3E-22 181.2 26.4 151 417-578 122-278 (387)
28 KOG2853|consensus 99.8 1.3E-17 2.7E-22 174.8 21.2 154 415-574 206-387 (509)
29 TIGR02352 thiamin_ThiO glycine 99.7 1.5E-16 3.3E-21 171.8 22.2 164 415-597 102-268 (337)
30 PRK12266 glpD glycerol-3-phosp 99.7 4.7E-17 1E-21 187.1 17.0 169 118-343 309-486 (508)
31 PRK13369 glycerol-3-phosphate 99.7 2.6E-16 5.6E-21 180.9 17.2 167 118-341 308-483 (502)
32 TIGR03377 glycerol3P_GlpA glyc 99.7 1.1E-15 2.4E-20 176.3 18.2 198 118-376 276-479 (516)
33 KOG2820|consensus 99.7 2E-15 4.3E-20 158.9 16.3 109 417-532 118-230 (399)
34 PRK11101 glpA sn-glycerol-3-ph 99.6 3.6E-15 7.9E-20 173.0 17.3 209 119-389 300-514 (546)
35 KOG2665|consensus 99.6 9.5E-16 2.1E-20 159.5 10.3 158 412-575 160-323 (453)
36 TIGR03197 MnmC_Cterm tRNA U-34 99.6 2.5E-14 5.3E-19 158.6 20.2 160 417-597 104-264 (381)
37 COG5126 FRQ1 Ca2+-binding prot 99.6 6.4E-15 1.4E-19 142.4 12.8 113 624-737 11-144 (160)
38 KOG0027|consensus 99.6 3.1E-14 6.7E-19 138.0 13.9 111 627-737 2-137 (151)
39 KOG0028|consensus 99.5 2.8E-13 6E-18 128.6 12.5 114 623-736 23-157 (172)
40 KOG4254|consensus 99.4 2E-12 4.3E-17 140.6 17.0 74 434-515 250-323 (561)
41 PRK07121 hypothetical protein; 99.4 2.2E-11 4.7E-16 139.9 21.4 65 448-514 175-240 (492)
42 COG1233 Phytoene dehydrogenase 99.4 1.5E-11 3.1E-16 141.2 17.6 68 436-511 212-279 (487)
43 KOG0030|consensus 99.3 5.3E-12 1.1E-16 117.3 10.2 108 627-734 5-138 (152)
44 TIGR01813 flavo_cyto_c flavocy 99.3 7.9E-11 1.7E-15 133.2 20.1 69 445-514 125-193 (439)
45 PTZ00183 centrin; Provisional 99.3 3.3E-11 7.1E-16 116.2 14.5 114 624-737 8-142 (158)
46 PTZ00184 calmodulin; Provision 99.3 4.6E-11 1E-15 113.6 13.6 114 624-737 2-136 (149)
47 PRK06134 putative FAD-binding 99.3 1.9E-10 4E-15 134.8 21.1 69 446-517 213-282 (581)
48 PRK06481 fumarate reductase fl 99.3 2.2E-10 4.7E-15 132.2 21.2 69 445-515 185-253 (506)
49 TIGR02730 carot_isom carotene 99.3 1.7E-10 3.7E-15 132.5 19.9 70 437-514 218-287 (493)
50 COG5126 FRQ1 Ca2+-binding prot 99.3 4.1E-11 8.8E-16 116.2 12.1 104 582-697 49-156 (160)
51 PRK12842 putative succinate de 99.2 2.7E-10 5.8E-15 133.3 20.6 66 448-516 212-278 (574)
52 PF00890 FAD_binding_2: FAD bi 99.2 2E-10 4.4E-15 128.7 18.7 68 448-516 139-206 (417)
53 PRK12845 3-ketosteroid-delta-1 99.2 2.8E-10 6.1E-15 132.7 20.3 64 449-515 216-280 (564)
54 PRK12835 3-ketosteroid-delta-1 99.2 3.2E-10 7E-15 132.8 19.2 69 449-519 212-283 (584)
55 KOG2852|consensus 99.2 1.6E-10 3.4E-15 119.9 14.3 146 443-597 140-296 (380)
56 PRK12839 hypothetical protein; 99.2 5.8E-10 1.3E-14 130.3 21.0 69 447-516 211-279 (572)
57 PRK06185 hypothetical protein; 99.2 7.5E-10 1.6E-14 123.7 20.8 122 447-575 105-228 (407)
58 KOG0031|consensus 99.2 1.4E-10 3.1E-15 109.6 12.5 105 626-734 25-152 (171)
59 PRK08274 tricarballylate dehyd 99.2 4.7E-10 1E-14 127.9 18.9 64 449-514 130-193 (466)
60 KOG3923|consensus 99.2 5E-10 1.1E-14 116.8 16.3 146 415-598 121-266 (342)
61 KOG0027|consensus 99.2 2.2E-10 4.8E-15 111.1 12.2 108 582-697 37-149 (151)
62 PRK04176 ribulose-1,5-biphosph 99.2 1.1E-09 2.3E-14 115.7 17.4 70 447-516 101-176 (257)
63 PTZ00139 Succinate dehydrogena 99.1 1.2E-09 2.6E-14 128.7 19.1 68 449-516 165-232 (617)
64 PRK12844 3-ketosteroid-delta-1 99.1 1.8E-09 3.9E-14 126.0 20.3 64 449-515 207-271 (557)
65 PRK08626 fumarate reductase fl 99.1 1E-09 2.2E-14 130.2 18.4 67 449-516 157-223 (657)
66 COG0644 FixC Dehydrogenases (f 99.1 7.7E-09 1.7E-13 115.7 23.3 122 447-575 92-216 (396)
67 TIGR02734 crtI_fam phytoene de 99.1 4.4E-10 9.5E-15 129.3 13.7 68 438-513 209-276 (502)
68 PRK07804 L-aspartate oxidase; 99.1 1.2E-09 2.6E-14 127.0 17.1 67 448-514 142-211 (541)
69 PF06039 Mqo: Malate:quinone o 99.1 7.7E-09 1.7E-13 114.7 22.2 121 420-541 146-274 (488)
70 PRK06452 sdhA succinate dehydr 99.1 2.8E-09 6E-14 124.6 19.1 64 449-513 135-198 (566)
71 PRK12837 3-ketosteroid-delta-1 99.1 4E-09 8.8E-14 121.9 20.1 64 449-515 172-237 (513)
72 PRK09078 sdhA succinate dehydr 99.1 4.2E-09 9.1E-14 123.8 20.1 68 449-516 148-215 (598)
73 PRK12843 putative FAD-binding 99.1 6.8E-09 1.5E-13 121.7 21.6 66 447-515 218-284 (578)
74 PRK08958 sdhA succinate dehydr 99.1 4.4E-09 9.5E-14 123.4 20.0 68 449-516 142-209 (588)
75 PLN00128 Succinate dehydrogena 99.1 2.6E-09 5.6E-14 126.2 17.6 68 449-516 186-253 (635)
76 PRK08773 2-octaprenyl-3-methyl 99.1 7.5E-09 1.6E-13 115.2 19.8 85 447-539 110-194 (392)
77 PRK08071 L-aspartate oxidase; 99.0 3.2E-09 7E-14 122.6 16.6 64 448-514 128-191 (510)
78 PLN02815 L-aspartate oxidase 99.0 3.6E-09 7.8E-14 124.0 16.9 68 448-515 153-224 (594)
79 PRK08205 sdhA succinate dehydr 99.0 3.7E-09 8E-14 124.0 16.7 69 448-516 138-209 (583)
80 PRK06175 L-aspartate oxidase; 99.0 7.1E-09 1.5E-13 117.4 18.0 63 449-514 127-190 (433)
81 PRK07573 sdhA succinate dehydr 99.0 4.7E-09 1E-13 124.2 17.2 61 454-515 174-234 (640)
82 PRK05945 sdhA succinate dehydr 99.0 3.8E-09 8.2E-14 123.8 16.1 67 449-516 134-200 (575)
83 KOG0036|consensus 99.0 2.3E-09 5.1E-14 115.4 13.0 110 627-736 8-133 (463)
84 PRK08641 sdhA succinate dehydr 99.0 8.2E-09 1.8E-13 121.2 18.7 68 448-515 131-202 (589)
85 PRK07057 sdhA succinate dehydr 99.0 1.1E-08 2.5E-13 120.1 19.7 68 449-516 147-214 (591)
86 PRK07608 ubiquinone biosynthes 99.0 1.8E-08 3.8E-13 111.8 19.6 85 446-539 107-192 (388)
87 TIGR02733 desat_CrtD C-3',4' d 99.0 1.5E-08 3.2E-13 116.5 19.5 64 449-513 231-294 (492)
88 TIGR00551 nadB L-aspartate oxi 99.0 1E-08 2.2E-13 117.9 17.9 65 448-515 126-191 (488)
89 KOG0028|consensus 99.0 2.8E-09 6E-14 101.7 10.8 105 581-697 61-170 (172)
90 cd05022 S-100A13 S-100A13: S-1 99.0 1.3E-09 2.9E-14 96.3 8.2 69 630-698 5-76 (89)
91 TIGR01812 sdhA_frdA_Gneg succi 99.0 1.5E-08 3.2E-13 118.6 19.2 67 449-516 128-194 (566)
92 PTZ00363 rab-GDP dissociation 99.0 3.3E-08 7.2E-13 112.0 21.2 61 450-515 232-292 (443)
93 TIGR03378 glycerol3P_GlpB glyc 99.0 1.4E-08 3E-13 113.4 17.8 71 447-521 260-331 (419)
94 PRK07803 sdhA succinate dehydr 99.0 1.7E-08 3.6E-13 119.4 19.3 67 449-516 137-216 (626)
95 PRK07843 3-ketosteroid-delta-1 99.0 2E-08 4.4E-13 117.2 19.3 62 450-514 208-270 (557)
96 PRK06263 sdhA succinate dehydr 99.0 2E-08 4.3E-13 117.0 19.2 66 449-514 133-198 (543)
97 TIGR02032 GG-red-SF geranylger 99.0 1.8E-07 4E-12 98.7 24.4 122 446-575 87-213 (295)
98 TIGR01176 fum_red_Fp fumarate 99.0 2.3E-08 5.1E-13 117.1 19.2 66 449-515 131-197 (580)
99 PRK09231 fumarate reductase fl 98.9 2.4E-08 5.2E-13 117.1 18.8 66 449-515 132-198 (582)
100 PRK06854 adenylylsulfate reduc 98.9 1.5E-08 3.1E-13 119.5 16.9 68 448-516 130-198 (608)
101 PRK07512 L-aspartate oxidase; 98.9 1.2E-08 2.5E-13 118.1 15.7 65 448-515 134-199 (513)
102 PRK07494 2-octaprenyl-6-methox 98.9 2.8E-08 6E-13 110.4 18.0 71 447-525 108-178 (388)
103 TIGR00292 thiazole biosynthesi 98.9 2E-08 4.4E-13 105.8 16.0 65 448-513 98-170 (254)
104 PRK09077 L-aspartate oxidase; 98.9 2.9E-08 6.3E-13 115.4 18.9 68 449-516 137-210 (536)
105 PF03486 HI0933_like: HI0933-l 98.9 3.9E-09 8.5E-14 118.3 11.2 60 448-513 107-166 (409)
106 PLN02697 lycopene epsilon cycl 98.9 5.3E-08 1.1E-12 112.5 20.6 122 445-573 187-322 (529)
107 PRK07395 L-aspartate oxidase; 98.9 1.8E-08 3.8E-13 117.5 16.3 65 449-515 133-199 (553)
108 PRK12834 putative FAD-binding 98.9 3.5E-08 7.5E-13 115.1 18.3 48 41-88 3-52 (549)
109 PRK10157 putative oxidoreducta 98.9 2.1E-08 4.5E-13 113.5 15.9 70 447-524 105-174 (428)
110 KOG0037|consensus 98.9 1E-08 2.2E-13 102.8 11.7 103 633-735 57-174 (221)
111 PF01946 Thi4: Thi4 family; PD 98.9 1.8E-08 4E-13 102.0 13.5 67 447-513 93-165 (230)
112 PRK07333 2-octaprenyl-6-methox 98.9 6.8E-08 1.5E-12 107.6 19.5 86 446-539 107-192 (403)
113 PTZ00306 NADH-dependent fumara 98.9 1.9E-08 4.2E-13 126.4 16.7 51 37-87 404-454 (1167)
114 PRK08275 putative oxidoreducta 98.9 5.6E-08 1.2E-12 113.5 19.3 67 449-515 136-202 (554)
115 PRK07208 hypothetical protein; 98.9 1.1E-07 2.3E-12 108.8 21.0 72 439-513 209-280 (479)
116 PRK06069 sdhA succinate dehydr 98.9 3.8E-08 8.1E-13 115.5 17.3 66 449-515 136-202 (577)
117 TIGR01790 carotene-cycl lycope 98.9 1.4E-07 3.1E-12 104.7 21.0 121 445-575 80-213 (388)
118 cd05027 S-100B S-100B: S-100B 98.9 9.8E-09 2.1E-13 90.7 9.2 69 630-698 5-80 (88)
119 COG1635 THI4 Ribulose 1,5-bisp 98.9 4E-08 8.6E-13 99.1 14.5 69 447-515 106-180 (262)
120 PF13499 EF-hand_7: EF-hand do 98.9 9.3E-09 2E-13 85.1 8.3 62 634-695 1-66 (66)
121 PRK08244 hypothetical protein; 98.9 5.5E-07 1.2E-11 103.6 25.7 70 450-524 100-169 (493)
122 PRK05714 2-octaprenyl-3-methyl 98.9 1E-07 2.2E-12 106.6 19.1 71 447-525 109-179 (405)
123 smart00027 EH Eps15 homology d 98.9 1.3E-08 2.9E-13 91.1 9.7 72 625-698 2-73 (96)
124 TIGR01811 sdhA_Bsu succinate d 98.8 4.2E-08 9.2E-13 115.5 16.5 67 449-515 128-198 (603)
125 PF00732 GMC_oxred_N: GMC oxid 98.8 1.1E-07 2.3E-12 101.7 18.2 68 455-522 197-268 (296)
126 PRK13977 myosin-cross-reactive 98.8 1.9E-07 4E-12 107.7 20.8 67 450-516 226-296 (576)
127 PRK06184 hypothetical protein; 98.8 3.9E-07 8.5E-12 105.1 23.7 71 450-525 109-179 (502)
128 TIGR02023 BchP-ChlP geranylger 98.8 2.7E-07 5.8E-12 102.9 21.4 74 446-523 88-164 (388)
129 PRK10015 oxidoreductase; Provi 98.8 5.7E-08 1.2E-12 109.9 15.9 67 448-522 106-172 (429)
130 PF01494 FAD_binding_3: FAD bi 98.8 2.3E-07 5E-12 100.2 19.6 74 447-523 108-181 (356)
131 PRK06126 hypothetical protein; 98.8 1.1E-06 2.3E-11 102.5 25.2 72 450-524 126-198 (545)
132 TIGR02061 aprA adenosine phosp 98.8 2.4E-07 5.3E-12 108.9 19.5 66 451-516 127-194 (614)
133 TIGR01988 Ubi-OHases Ubiquinon 98.8 2.1E-07 4.5E-12 102.7 17.9 70 447-524 103-173 (385)
134 COG2081 Predicted flavoprotein 98.8 1.3E-07 2.8E-12 103.2 15.7 58 449-513 110-167 (408)
135 PRK07364 2-octaprenyl-6-methox 98.8 5.8E-07 1.3E-11 100.6 21.4 69 450-523 121-190 (415)
136 COG1053 SdhA Succinate dehydro 98.8 5E-08 1.1E-12 113.3 12.6 66 448-513 136-202 (562)
137 PRK06847 hypothetical protein; 98.7 1.3E-06 2.8E-11 96.4 23.0 67 446-519 103-169 (375)
138 TIGR01810 betA choline dehydro 98.7 1.4E-07 3E-12 109.6 15.9 66 456-523 199-266 (532)
139 cd05029 S-100A6 S-100A6: S-100 98.7 4.9E-08 1.1E-12 86.3 9.0 70 629-698 6-80 (88)
140 TIGR01984 UbiH 2-polyprenyl-6- 98.7 2.5E-07 5.3E-12 102.4 16.4 71 447-525 102-173 (382)
141 cd05026 S-100Z S-100Z: S-100Z 98.7 5.4E-08 1.2E-12 86.8 9.0 70 629-698 6-82 (93)
142 PRK08020 ubiF 2-octaprenyl-3-m 98.7 4.1E-07 8.9E-12 101.1 17.8 85 447-539 109-194 (391)
143 PLN00093 geranylgeranyl diphos 98.7 1.2E-06 2.5E-11 99.9 21.8 76 446-523 128-208 (450)
144 TIGR02731 phytoene_desat phyto 98.7 2.4E-07 5.3E-12 105.2 16.1 65 449-513 212-276 (453)
145 PRK05192 tRNA uridine 5-carbox 98.7 2E-07 4.3E-12 108.4 15.3 66 443-515 93-159 (618)
146 PRK13800 putative oxidoreducta 98.7 3.3E-07 7.1E-12 112.7 18.0 66 449-515 138-207 (897)
147 cd05031 S-100A10_like S-100A10 98.7 6.6E-08 1.4E-12 86.3 8.8 69 630-698 5-80 (94)
148 PRK06834 hypothetical protein; 98.7 1.3E-06 2.7E-11 100.7 21.6 68 450-525 100-167 (488)
149 PRK07233 hypothetical protein; 98.7 1.4E-06 3E-11 97.8 21.3 57 449-512 197-253 (434)
150 cd05025 S-100A1 S-100A1: S-100 98.7 8.2E-08 1.8E-12 85.3 9.0 68 631-698 7-81 (92)
151 PLN02661 Putative thiazole syn 98.7 3.2E-07 7E-12 100.2 15.4 64 449-513 171-244 (357)
152 cd00213 S-100 S-100: S-100 dom 98.7 7E-08 1.5E-12 84.8 8.0 70 629-698 4-80 (88)
153 PRK05732 2-octaprenyl-6-methox 98.6 7.4E-07 1.6E-11 99.0 17.3 67 451-525 113-180 (395)
154 PRK08401 L-aspartate oxidase; 98.6 6.1E-07 1.3E-11 102.7 17.0 61 449-517 119-179 (466)
155 KOG0037|consensus 98.6 4.1E-07 8.8E-12 91.4 13.1 95 586-699 91-190 (221)
156 PRK08163 salicylate hydroxylas 98.6 6.8E-07 1.5E-11 99.5 16.6 69 447-522 106-175 (396)
157 TIGR02462 pyranose_ox pyranose 98.6 6.2E-07 1.3E-11 103.8 16.5 59 464-522 228-289 (544)
158 KOG0031|consensus 98.6 3.7E-07 7.9E-12 86.8 11.7 103 582-696 61-164 (171)
159 PTZ00184 calmodulin; Provision 98.6 3.9E-07 8.4E-12 86.6 12.2 100 585-696 43-147 (149)
160 PF05834 Lycopene_cycl: Lycope 98.6 2E-06 4.4E-11 95.6 19.8 120 442-576 79-204 (374)
161 TIGR02028 ChlP geranylgeranyl 98.6 2.5E-06 5.4E-11 95.7 20.5 76 446-523 89-169 (398)
162 PRK06183 mhpA 3-(3-hydroxyphen 98.6 2.2E-06 4.7E-11 99.8 20.5 71 450-524 113-184 (538)
163 PRK08132 FAD-dependent oxidore 98.6 5E-06 1.1E-10 97.0 23.4 70 451-525 126-196 (547)
164 COG0654 UbiH 2-polyprenyl-6-me 98.6 5.5E-06 1.2E-10 92.4 22.6 66 449-521 103-169 (387)
165 PTZ00183 centrin; Provisional 98.6 4.5E-07 9.7E-12 87.4 12.1 100 586-697 50-154 (158)
166 PF12831 FAD_oxidored: FAD dep 98.6 5.6E-08 1.2E-12 110.0 6.6 72 448-524 88-159 (428)
167 KOG0030|consensus 98.6 2.3E-07 5.1E-12 86.7 9.4 105 581-696 39-150 (152)
168 PRK08013 oxidoreductase; Provi 98.6 2.6E-06 5.6E-11 95.4 19.8 71 447-525 108-179 (400)
169 TIGR02485 CobZ_N-term precorri 98.6 5.9E-07 1.3E-11 101.7 14.4 62 449-514 122-184 (432)
170 TIGR02732 zeta_caro_desat caro 98.6 1.5E-06 3.2E-11 99.7 17.6 62 450-513 219-284 (474)
171 PRK05329 anaerobic glycerol-3- 98.6 9.8E-06 2.1E-10 91.5 23.6 62 450-515 259-320 (422)
172 PRK07190 hypothetical protein; 98.6 3.8E-06 8.2E-11 96.7 20.7 67 451-525 110-176 (487)
173 PRK09126 hypothetical protein; 98.6 1.8E-06 3.9E-11 95.9 17.4 67 450-524 110-177 (392)
174 cd00052 EH Eps15 homology doma 98.6 1.8E-07 3.9E-12 77.1 7.0 60 636-697 2-61 (67)
175 PLN02612 phytoene desaturase 98.6 1.6E-06 3.5E-11 101.5 17.5 60 449-513 307-366 (567)
176 PLN02463 lycopene beta cyclase 98.5 3.9E-06 8.5E-11 95.5 20.0 63 444-514 108-170 (447)
177 KOG0041|consensus 98.5 2.4E-07 5.2E-12 91.4 8.6 89 627-715 93-181 (244)
178 PRK07045 putative monooxygenas 98.5 1.3E-05 2.8E-10 89.2 23.7 62 449-515 105-167 (388)
179 PLN02985 squalene monooxygenas 98.5 5E-06 1.1E-10 96.3 20.9 72 447-522 144-216 (514)
180 PRK11445 putative oxidoreducta 98.5 6.2E-06 1.4E-10 90.8 20.6 70 447-522 96-165 (351)
181 PLN02964 phosphatidylserine de 98.5 4.6E-07 9.9E-12 105.8 12.1 96 630-729 140-272 (644)
182 PRK07588 hypothetical protein; 98.5 5.4E-06 1.2E-10 92.3 20.2 59 450-516 103-161 (391)
183 PRK02106 choline dehydrogenase 98.5 2.8E-06 6.1E-11 99.4 18.7 60 461-522 212-272 (560)
184 cd05023 S-100A11 S-100A11: S-1 98.5 4.6E-07 1E-11 80.2 8.9 70 629-698 5-81 (89)
185 PRK08243 4-hydroxybenzoate 3-m 98.5 1.3E-06 2.7E-11 97.6 14.7 69 450-522 103-171 (392)
186 PRK08849 2-octaprenyl-3-methyl 98.5 6.5E-06 1.4E-10 91.6 19.5 65 451-523 111-176 (384)
187 TIGR00136 gidA glucose-inhibit 98.5 1.1E-06 2.5E-11 102.0 13.7 64 444-513 90-154 (617)
188 TIGR01989 COQ6 Ubiquinone bios 98.5 5.9E-06 1.3E-10 93.8 18.9 73 447-525 114-194 (437)
189 PF01134 GIDA: Glucose inhibit 98.5 1.9E-06 4.2E-11 95.5 14.1 65 445-516 90-155 (392)
190 PF13833 EF-hand_8: EF-hand do 98.4 8E-07 1.7E-11 70.7 7.6 52 646-697 1-53 (54)
191 KOG0034|consensus 98.4 1.9E-06 4E-11 86.5 12.0 109 625-737 25-163 (187)
192 PRK06617 2-octaprenyl-6-methox 98.4 1.1E-05 2.4E-10 89.5 19.4 68 447-523 101-169 (374)
193 PRK08850 2-octaprenyl-6-methox 98.4 1.2E-05 2.5E-10 90.2 19.2 66 451-524 112-178 (405)
194 COG3075 GlpB Anaerobic glycero 98.4 4.6E-06 1E-10 88.7 14.2 64 449-516 257-321 (421)
195 cd00051 EFh EF-hand, calcium b 98.4 1E-06 2.2E-11 69.8 7.2 61 635-695 2-62 (63)
196 PF14658 EF-hand_9: EF-hand do 98.4 1.2E-06 2.5E-11 72.6 7.3 61 637-697 2-64 (66)
197 PLN02487 zeta-carotene desatur 98.4 6.6E-06 1.4E-10 96.1 16.2 61 451-513 296-360 (569)
198 TIGR00275 flavoprotein, HI0933 98.4 8.4E-06 1.8E-10 91.5 16.5 68 449-524 104-181 (400)
199 TIGR02360 pbenz_hydroxyl 4-hyd 98.4 7E-06 1.5E-10 91.8 15.6 68 450-521 103-170 (390)
200 KOG1298|consensus 98.4 7E-06 1.5E-10 88.9 14.6 69 449-520 146-215 (509)
201 KOG0034|consensus 98.4 2.4E-06 5.3E-11 85.6 10.6 85 602-698 85-176 (187)
202 KOG2404|consensus 98.3 6.7E-06 1.4E-10 87.1 14.0 56 465-522 160-218 (477)
203 PRK07538 hypothetical protein; 98.3 6.3E-06 1.4E-10 92.6 14.5 67 447-515 99-167 (413)
204 PRK06996 hypothetical protein; 98.3 4.4E-05 9.5E-10 85.5 21.2 74 447-524 112-185 (398)
205 KOG0044|consensus 98.3 4.8E-06 1E-10 83.7 11.8 102 585-698 22-129 (193)
206 PRK08294 phenol 2-monooxygenas 98.3 5.8E-05 1.3E-09 89.7 22.6 77 448-525 139-221 (634)
207 cd05030 calgranulins Calgranul 98.3 2.6E-06 5.6E-11 75.2 7.5 69 630-698 5-80 (88)
208 PF04820 Trp_halogenase: Trypt 98.3 7.5E-06 1.6E-10 93.4 13.2 66 445-516 149-214 (454)
209 COG0029 NadB Aspartate oxidase 98.2 1.3E-05 2.9E-10 89.7 14.3 73 447-521 130-204 (518)
210 COG2303 BetA Choline dehydroge 98.2 1.7E-05 3.6E-10 92.6 15.9 62 460-522 213-276 (542)
211 TIGR01789 lycopene_cycl lycope 98.2 3.9E-05 8.4E-10 85.4 18.1 110 445-575 84-197 (370)
212 PF13738 Pyr_redox_3: Pyridine 98.2 4.3E-06 9.4E-11 83.9 9.2 57 450-513 82-138 (203)
213 cd00252 SPARC_EC SPARC_EC; ext 98.2 1.3E-05 2.9E-10 74.4 11.6 65 628-696 43-107 (116)
214 PRK06327 dihydrolipoamide dehy 98.2 5.9E-05 1.3E-09 86.6 18.8 62 450-514 224-285 (475)
215 KOG2415|consensus 98.2 1.3E-05 2.7E-10 87.5 12.3 76 447-522 180-268 (621)
216 PRK06753 hypothetical protein; 98.2 8E-05 1.7E-09 82.2 18.6 34 44-77 2-35 (373)
217 PRK05868 hypothetical protein; 98.2 0.00013 2.8E-09 81.1 20.3 33 44-76 3-35 (372)
218 KOG0036|consensus 98.2 1.1E-05 2.3E-10 87.7 10.9 96 585-698 47-147 (463)
219 PF13450 NAD_binding_8: NAD(P) 98.1 3E-06 6.5E-11 71.2 4.4 35 47-81 1-35 (68)
220 PLN02172 flavin-containing mon 98.1 2.7E-05 5.8E-10 89.1 13.1 62 449-513 110-173 (461)
221 KOG0044|consensus 98.1 1.3E-05 2.8E-10 80.6 9.2 98 587-697 62-175 (193)
222 PRK06475 salicylate hydroxylas 98.1 4.3E-05 9.4E-10 85.5 14.3 65 447-515 104-169 (400)
223 COG1249 Lpd Pyruvate/2-oxoglut 98.1 7.4E-05 1.6E-09 85.0 16.1 71 449-524 213-286 (454)
224 PLN02785 Protein HOTHEAD 98.1 2.5E-05 5.5E-10 91.8 12.7 65 458-523 228-301 (587)
225 KOG1335|consensus 98.0 0.00024 5.3E-09 77.2 16.5 74 449-523 251-327 (506)
226 COG2072 TrkA Predicted flavopr 98.0 9.3E-05 2E-09 84.3 14.1 41 40-80 6-47 (443)
227 COG3573 Predicted oxidoreducta 97.9 0.00011 2.4E-09 78.4 13.0 36 40-75 3-38 (552)
228 cd05024 S-100A10 S-100A10: A s 97.9 5.4E-05 1.2E-09 67.0 8.8 68 630-698 5-77 (91)
229 PRK15317 alkyl hydroperoxide r 97.9 0.00014 3.1E-09 84.4 13.9 57 450-513 266-322 (517)
230 PF00996 GDI: GDP dissociation 97.8 0.00074 1.6E-08 76.5 18.7 54 450-509 232-285 (438)
231 KOG0038|consensus 97.8 6.4E-05 1.4E-09 71.0 8.4 84 602-697 89-177 (189)
232 PRK05675 sdhA succinate dehydr 97.8 0.00025 5.5E-09 83.3 15.5 68 448-515 124-191 (570)
233 KOG0029|consensus 97.8 2.4E-05 5.2E-10 90.0 5.4 42 39-80 12-53 (501)
234 COG2509 Uncharacterized FAD-de 97.8 0.0037 8.1E-08 69.8 21.8 66 448-519 171-236 (486)
235 KOG0040|consensus 97.7 0.00021 4.6E-09 87.0 12.7 96 622-717 2242-2345(2399)
236 COG0445 GidA Flavin-dependent 97.7 8.3E-05 1.8E-09 84.2 8.3 64 445-515 95-160 (621)
237 PF12763 EF-hand_4: Cytoskelet 97.7 0.00012 2.6E-09 66.7 7.8 69 626-697 3-71 (104)
238 PLN02268 probable polyamine ox 97.7 3.7E-05 8.1E-10 86.9 5.2 39 43-81 1-39 (435)
239 PLN02576 protoporphyrinogen ox 97.7 4.3E-05 9.2E-10 87.9 5.5 40 41-80 11-51 (496)
240 PRK08010 pyridine nucleotide-d 97.7 4.4E-05 9.6E-10 86.7 5.1 47 41-87 2-48 (441)
241 PRK07236 hypothetical protein; 97.7 6.8E-05 1.5E-09 83.5 6.5 39 38-76 2-40 (386)
242 PRK11883 protoporphyrinogen ox 97.6 4.7E-05 1E-09 86.0 4.9 38 44-81 2-41 (451)
243 PLN02964 phosphatidylserine de 97.6 0.00018 4E-09 84.4 9.5 71 627-697 173-243 (644)
244 TIGR01421 gluta_reduc_1 glutat 97.6 5.2E-05 1.1E-09 86.5 4.9 61 450-515 207-267 (450)
245 TIGR00562 proto_IX_ox protopor 97.6 6.4E-05 1.4E-09 85.5 5.1 39 43-81 3-45 (462)
246 PF00743 FMO-like: Flavin-bind 97.6 0.00033 7.1E-09 81.5 10.8 66 448-515 82-152 (531)
247 PF06100 Strep_67kDa_ant: Stre 97.6 0.0045 9.7E-08 70.3 19.1 40 42-81 2-45 (500)
248 PRK05249 soluble pyridine nucl 97.5 8.2E-05 1.8E-09 84.9 5.3 40 41-80 4-43 (461)
249 PRK06370 mercuric reductase; V 97.5 8.5E-05 1.8E-09 84.9 5.4 40 41-80 4-43 (463)
250 TIGR00031 UDP-GALP_mutase UDP- 97.5 9.9E-05 2.1E-09 82.2 5.3 38 43-80 2-39 (377)
251 PF00036 EF-hand_1: EF hand; 97.5 0.00015 3.3E-09 50.5 4.2 27 635-661 2-28 (29)
252 TIGR01350 lipoamide_DH dihydro 97.5 0.00011 2.3E-09 83.9 5.3 60 450-514 211-270 (461)
253 TIGR01424 gluta_reduc_2 glutat 97.5 0.0001 2.2E-09 84.0 5.0 45 42-88 2-46 (446)
254 PRK07251 pyridine nucleotide-d 97.5 0.00011 2.4E-09 83.3 5.3 45 41-86 2-47 (438)
255 KOG4223|consensus 97.5 0.00029 6.4E-09 74.9 7.7 106 632-737 162-293 (325)
256 COG2907 Predicted NAD/FAD-bind 97.5 0.00069 1.5E-08 73.0 10.5 40 41-81 7-46 (447)
257 COG3349 Uncharacterized conser 97.5 0.00011 2.3E-09 83.2 4.7 37 44-80 2-38 (485)
258 PRK06416 dihydrolipoamide dehy 97.4 0.00013 2.8E-09 83.4 5.1 61 450-514 213-273 (462)
259 PRK14694 putative mercuric red 97.4 0.00015 3.1E-09 83.2 5.4 47 39-87 3-49 (468)
260 TIGR01292 TRX_reduct thioredox 97.4 0.00015 3.3E-09 76.9 5.1 56 456-513 182-238 (300)
261 PRK06116 glutathione reductase 97.4 0.00013 2.7E-09 83.2 4.7 58 450-513 208-265 (450)
262 PF14788 EF-hand_10: EF hand; 97.4 0.00049 1.1E-08 54.1 6.4 50 649-698 1-50 (51)
263 PRK05976 dihydrolipoamide dehy 97.4 0.00016 3.4E-09 83.0 5.2 62 450-514 221-282 (472)
264 PRK06115 dihydrolipoamide dehy 97.4 0.00016 3.4E-09 82.9 5.1 46 41-87 2-47 (466)
265 PF00036 EF-hand_1: EF hand; 97.4 0.00026 5.6E-09 49.3 4.1 28 670-697 1-28 (29)
266 PRK07818 dihydrolipoamide dehy 97.4 0.00018 3.9E-09 82.4 5.3 62 450-514 213-274 (466)
267 PLN02676 polyamine oxidase 97.4 0.00021 4.6E-09 82.4 5.7 46 36-81 20-66 (487)
268 TIGR02053 MerA mercuric reduct 97.4 0.00018 4E-09 82.2 5.1 36 43-78 1-36 (463)
269 PRK12416 protoporphyrinogen ox 97.4 0.00017 3.6E-09 82.4 4.7 38 44-81 3-46 (463)
270 PRK06292 dihydrolipoamide dehy 97.3 0.00021 4.5E-09 81.6 5.3 39 41-80 2-40 (460)
271 KOG2614|consensus 97.3 0.0003 6.5E-09 77.5 6.3 34 42-75 2-35 (420)
272 PTZ00367 squalene epoxidase; P 97.3 0.00019 4.1E-09 84.1 4.6 35 41-75 32-66 (567)
273 PTZ00058 glutathione reductase 97.3 0.00024 5.1E-09 83.2 5.4 47 40-88 46-92 (561)
274 PRK06467 dihydrolipoamide dehy 97.3 0.00024 5.2E-09 81.6 5.4 45 41-86 3-47 (471)
275 PF13405 EF-hand_6: EF-hand do 97.3 0.00035 7.7E-09 49.2 4.2 30 634-663 1-31 (31)
276 COG1232 HemY Protoporphyrinoge 97.3 0.00022 4.7E-09 80.8 4.7 37 44-80 2-40 (444)
277 TIGR03143 AhpF_homolog putativ 97.3 0.00025 5.4E-09 83.2 5.3 37 41-77 3-39 (555)
278 COG1252 Ndh NADH dehydrogenase 97.3 0.016 3.4E-07 65.1 19.0 63 448-520 207-269 (405)
279 COG0492 TrxB Thioredoxin reduc 97.3 0.00028 6.1E-09 76.4 5.0 61 456-520 184-246 (305)
280 PTZ00318 NADH dehydrogenase-li 97.3 0.013 2.8E-07 66.5 18.5 62 450-522 228-289 (424)
281 COG1231 Monoamine oxidase [Ami 97.2 0.00036 7.7E-09 78.0 5.3 42 40-81 5-46 (450)
282 COG3380 Predicted NAD/FAD-depe 97.2 0.00037 8E-09 72.9 4.9 37 43-79 2-38 (331)
283 PLN02568 polyamine oxidase 97.2 0.00036 7.8E-09 81.4 5.4 40 41-80 4-48 (539)
284 PRK10262 thioredoxin reductase 97.2 0.00042 9.2E-09 75.2 5.4 63 452-515 187-250 (321)
285 KOG4223|consensus 97.2 0.00091 2E-08 71.3 7.5 107 631-737 75-216 (325)
286 PRK13748 putative mercuric red 97.2 0.00038 8.3E-09 81.5 5.0 45 41-87 97-141 (561)
287 KOG0046|consensus 97.2 0.0011 2.3E-08 74.3 8.1 74 624-698 10-86 (627)
288 PRK05335 tRNA (uracil-5-)-meth 97.1 0.00044 9.6E-09 77.8 4.9 35 43-77 3-37 (436)
289 COG1148 HdrA Heterodisulfide r 97.1 0.00045 9.8E-09 77.1 4.8 72 452-525 416-492 (622)
290 COG0562 Glf UDP-galactopyranos 97.1 0.00056 1.2E-08 73.1 5.2 39 42-80 1-39 (374)
291 TIGR03315 Se_ygfK putative sel 97.1 0.00059 1.3E-08 84.2 5.6 40 41-80 536-575 (1012)
292 KOG0377|consensus 97.1 0.0014 3.1E-08 71.8 7.7 66 633-698 547-616 (631)
293 TIGR01423 trypano_reduc trypan 97.0 0.00064 1.4E-08 78.4 5.3 59 450-514 231-289 (486)
294 PLN02927 antheraxanthin epoxid 97.0 0.00089 1.9E-08 79.5 6.5 36 40-75 79-114 (668)
295 PLN02328 lysine-specific histo 97.0 0.00068 1.5E-08 81.9 5.5 41 40-80 236-276 (808)
296 PLN02507 glutathione reductase 97.0 0.00069 1.5E-08 78.4 5.2 58 450-514 244-301 (499)
297 PTZ00153 lipoamide dehydrogena 97.0 0.00073 1.6E-08 80.5 5.3 47 41-88 115-162 (659)
298 PRK12831 putative oxidoreducta 97.0 0.00082 1.8E-08 77.1 5.5 40 41-80 139-178 (464)
299 PRK14727 putative mercuric red 97.0 0.00074 1.6E-08 77.7 4.9 46 41-87 15-60 (479)
300 PF07992 Pyr_redox_2: Pyridine 96.9 0.00085 1.9E-08 66.9 4.5 32 44-75 1-32 (201)
301 KOG0377|consensus 96.9 0.016 3.5E-07 63.9 14.2 104 556-666 393-498 (631)
302 PTZ00052 thioredoxin reductase 96.9 0.00084 1.8E-08 77.7 5.0 57 451-514 223-279 (499)
303 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.0008 1.7E-08 76.0 4.6 34 43-76 1-34 (433)
304 PLN02546 glutathione reductase 96.9 0.00092 2E-08 78.3 5.3 33 41-73 78-110 (558)
305 PRK09897 hypothetical protein; 96.9 0.015 3.2E-07 67.9 15.0 38 43-80 2-42 (534)
306 PLN02529 lysine-specific histo 96.9 0.0011 2.4E-08 79.5 5.5 40 41-80 159-198 (738)
307 PRK12779 putative bifunctional 96.8 0.0012 2.6E-08 81.8 5.4 40 41-80 305-344 (944)
308 TIGR01372 soxA sarcosine oxida 96.8 0.0012 2.6E-08 82.5 5.2 41 41-81 162-202 (985)
309 TIGR01816 sdhA_forward succina 96.8 0.0046 9.9E-08 72.8 9.4 67 449-516 118-184 (565)
310 TIGR01316 gltA glutamate synth 96.7 0.0017 3.6E-08 74.3 5.4 39 41-79 132-170 (449)
311 PRK12309 transaldolase/EF-hand 96.7 0.0054 1.2E-07 68.6 9.1 55 630-697 331-385 (391)
312 TIGR03219 salicylate_mono sali 96.7 0.0014 3E-08 73.8 4.5 59 447-514 102-160 (414)
313 TIGR01438 TGR thioredoxin and 96.7 0.0018 3.9E-08 74.7 5.5 61 450-514 220-280 (484)
314 KOG1399|consensus 96.7 0.0015 3.2E-08 74.3 4.6 40 41-80 5-44 (448)
315 KOG2643|consensus 96.7 0.0072 1.6E-07 66.7 9.3 101 635-736 320-440 (489)
316 PRK12810 gltD glutamate syntha 96.7 0.0021 4.5E-08 73.9 5.5 65 457-522 336-411 (471)
317 PRK04965 NADH:flavorubredoxin 96.7 0.038 8.2E-07 61.5 15.3 59 458-523 191-250 (377)
318 PRK12778 putative bifunctional 96.7 0.0018 4E-08 78.6 5.2 40 41-80 430-469 (752)
319 PRK09853 putative selenate red 96.7 0.0021 4.4E-08 79.3 5.6 40 41-80 538-577 (1019)
320 PRK12775 putative trifunctiona 96.6 0.0019 4.2E-08 80.6 5.3 40 41-80 429-468 (1006)
321 PRK12769 putative oxidoreducta 96.6 0.0022 4.7E-08 76.8 5.4 40 41-80 326-365 (654)
322 TIGR03140 AhpF alkyl hydropero 96.6 0.002 4.4E-08 74.8 5.0 57 457-514 394-451 (515)
323 PF00070 Pyr_redox: Pyridine n 96.6 0.0032 6.9E-08 54.1 4.9 34 45-78 2-35 (80)
324 KOG4716|consensus 96.6 0.0029 6.2E-08 68.0 5.4 55 34-88 11-66 (503)
325 KOG1276|consensus 96.6 0.0022 4.8E-08 70.9 4.4 40 41-80 10-51 (491)
326 PRK11749 dihydropyrimidine deh 96.5 0.0028 6.1E-08 72.4 5.4 40 41-80 139-178 (457)
327 PRK12814 putative NADPH-depend 96.5 0.0028 6.1E-08 75.8 5.4 40 41-80 192-231 (652)
328 PLN03000 amine oxidase 96.4 0.0033 7.1E-08 76.4 5.3 41 41-81 183-223 (881)
329 PRK06912 acoL dihydrolipoamide 96.4 0.0032 6.9E-08 72.0 5.1 59 450-514 211-269 (458)
330 PF13434 K_oxygenase: L-lysine 96.4 0.019 4E-07 63.4 10.6 54 456-510 101-156 (341)
331 KOG0038|consensus 96.4 0.012 2.6E-07 56.0 7.6 64 674-737 76-165 (189)
332 PLN02852 ferredoxin-NADP+ redu 96.4 0.0042 9.1E-08 71.6 5.6 40 41-80 25-66 (491)
333 PF13499 EF-hand_7: EF-hand do 96.4 0.0041 8.9E-08 51.1 4.0 55 670-737 1-56 (66)
334 PF10591 SPARC_Ca_bdg: Secrete 96.4 0.0042 9.2E-08 57.5 4.5 62 630-693 51-112 (113)
335 TIGR01318 gltD_gamma_fam gluta 96.3 0.005 1.1E-07 70.7 5.5 40 41-80 140-179 (467)
336 PRK09754 phenylpropionate diox 96.3 0.055 1.2E-06 60.7 13.6 33 43-75 145-177 (396)
337 PRK07846 mycothione reductase; 96.3 0.0043 9.3E-08 71.0 4.7 43 42-88 1-43 (451)
338 PRK05976 dihydrolipoamide dehy 96.2 0.061 1.3E-06 61.8 14.0 34 43-76 181-214 (472)
339 PF13202 EF-hand_5: EF hand; P 96.2 0.0067 1.5E-07 40.7 3.6 24 635-658 1-24 (25)
340 TIGR01350 lipoamide_DH dihydro 96.2 0.062 1.3E-06 61.4 13.7 33 43-75 171-203 (461)
341 PF13833 EF-hand_8: EF-hand do 96.2 0.0056 1.2E-07 48.4 3.6 39 699-737 1-41 (54)
342 cd05022 S-100A13 S-100A13: S-1 96.1 0.0097 2.1E-07 52.8 5.3 51 670-736 9-62 (89)
343 PRK12809 putative oxidoreducta 96.1 0.0063 1.4E-07 72.7 5.3 40 41-80 309-348 (639)
344 PRK06416 dihydrolipoamide dehy 96.1 0.085 1.8E-06 60.4 14.1 34 43-76 173-206 (462)
345 TIGR01317 GOGAT_sm_gam glutama 96.0 0.0076 1.6E-07 69.6 5.5 39 42-80 143-181 (485)
346 PRK12770 putative glutamate sy 96.0 0.0083 1.8E-07 66.1 5.5 39 42-80 18-56 (352)
347 TIGR03452 mycothione_red mycot 96.0 0.0064 1.4E-07 69.5 4.8 43 42-88 2-44 (452)
348 PLN02976 amine oxidase 96.0 0.0074 1.6E-07 76.0 5.5 40 41-80 692-731 (1713)
349 PRK07845 flavoprotein disulfid 96.0 0.0077 1.7E-07 69.1 5.2 58 451-515 219-276 (466)
350 KOG0685|consensus 96.0 0.0088 1.9E-07 67.3 5.4 40 41-80 20-60 (498)
351 PRK12771 putative glutamate sy 96.0 0.0075 1.6E-07 70.9 5.1 40 41-80 136-175 (564)
352 TIGR02053 MerA mercuric reduct 96.0 0.094 2E-06 60.0 13.9 33 43-75 167-199 (463)
353 cd05027 S-100B S-100B: S-100B 96.0 0.023 5.1E-07 50.2 6.9 57 669-737 8-67 (88)
354 PRK06567 putative bifunctional 95.9 0.0082 1.8E-07 73.5 5.3 36 41-76 382-417 (1028)
355 PRK08255 salicylyl-CoA 5-hydro 95.9 0.0068 1.5E-07 73.9 4.5 33 44-76 2-36 (765)
356 PRK06370 mercuric reductase; V 95.9 0.11 2.4E-06 59.4 14.1 33 43-75 172-204 (463)
357 PRK09564 coenzyme A disulfide 95.9 0.097 2.1E-06 59.4 13.3 60 456-523 197-257 (444)
358 PRK07818 dihydrolipoamide dehy 95.8 0.13 2.9E-06 58.9 14.1 33 43-75 173-205 (466)
359 PRK06912 acoL dihydrolipoamide 95.7 0.14 3.1E-06 58.6 14.0 33 43-75 171-203 (458)
360 PF13202 EF-hand_5: EF hand; P 95.7 0.016 3.5E-07 38.9 3.6 25 671-695 1-25 (25)
361 PRK06115 dihydrolipoamide dehy 95.7 0.17 3.6E-06 58.2 14.3 33 43-75 175-207 (466)
362 PRK14989 nitrite reductase sub 95.7 0.13 2.8E-06 63.4 14.2 63 456-523 193-256 (847)
363 PRK13984 putative oxidoreducta 95.6 0.014 3.1E-07 69.2 5.5 40 41-80 282-321 (604)
364 KOG2960|consensus 95.4 0.0043 9.3E-08 62.8 0.2 41 41-81 75-117 (328)
365 TIGR02374 nitri_red_nirB nitri 95.3 0.14 3E-06 62.8 12.7 58 458-522 190-248 (785)
366 PRK06116 glutathione reductase 95.3 0.21 4.5E-06 57.0 13.3 33 43-75 168-200 (450)
367 KOG2311|consensus 95.2 0.018 4E-07 64.5 4.2 36 39-74 25-60 (679)
368 PTZ00188 adrenodoxin reductase 95.2 0.027 5.8E-07 64.7 5.5 40 42-81 39-79 (506)
369 KOG0169|consensus 95.1 0.094 2E-06 61.9 9.8 100 630-729 133-249 (746)
370 COG3486 IucD Lysine/ornithine 95.0 0.2 4.4E-06 55.7 11.4 50 462-512 290-339 (436)
371 PF13405 EF-hand_6: EF-hand do 95.0 0.037 8E-07 38.8 3.8 27 670-696 1-27 (31)
372 COG0493 GltD NADPH-dependent g 94.9 0.025 5.5E-07 64.7 4.3 37 43-79 124-160 (457)
373 KOG0405|consensus 94.7 0.036 7.7E-07 60.2 4.5 48 39-87 17-64 (478)
374 KOG4065|consensus 94.6 0.14 3.1E-06 47.0 7.4 67 626-694 62-142 (144)
375 KOG3855|consensus 94.6 0.037 8E-07 61.3 4.4 56 21-76 15-74 (481)
376 KOG1238|consensus 94.4 0.041 8.8E-07 64.3 4.4 61 462-523 266-329 (623)
377 cd05026 S-100Z S-100Z: S-100Z 94.4 0.12 2.7E-06 46.0 6.6 59 670-728 11-79 (93)
378 cd05029 S-100A6 S-100A6: S-100 94.3 0.064 1.4E-06 47.4 4.6 51 672-736 13-66 (88)
379 TIGR01423 trypano_reduc trypan 94.3 0.44 9.6E-06 55.2 12.7 34 43-76 188-224 (486)
380 cd00051 EFh EF-hand, calcium b 94.3 0.1 2.2E-06 40.7 5.3 55 671-726 2-60 (63)
381 PF13454 NAD_binding_9: FAD-NA 94.2 0.054 1.2E-06 52.7 4.2 36 46-81 1-41 (156)
382 cd05025 S-100A1 S-100A1: S-100 94.1 0.14 2.9E-06 45.4 6.3 47 669-715 9-61 (92)
383 PRK09754 phenylpropionate diox 93.9 0.064 1.4E-06 60.1 4.8 66 449-522 185-251 (396)
384 PRK09564 coenzyme A disulfide 93.9 0.058 1.3E-06 61.2 4.5 34 44-77 2-37 (444)
385 cd05031 S-100A10_like S-100A10 93.9 0.17 3.7E-06 45.0 6.5 60 669-728 8-77 (94)
386 COG3634 AhpF Alkyl hydroperoxi 93.7 0.045 9.7E-07 59.4 2.9 48 463-511 403-450 (520)
387 PF02558 ApbA: Ketopantoate re 93.7 0.088 1.9E-06 50.5 4.7 31 45-75 1-31 (151)
388 KOG0399|consensus 93.6 0.074 1.6E-06 64.9 4.6 38 42-79 1785-1822(2142)
389 KOG4251|consensus 93.5 0.15 3.1E-06 52.6 5.9 65 632-696 100-167 (362)
390 PRK13512 coenzyme A disulfide 93.5 0.081 1.8E-06 60.2 4.7 61 451-522 190-251 (438)
391 smart00054 EFh EF-hand, calciu 93.4 0.094 2E-06 34.2 3.2 25 636-660 3-27 (29)
392 PF02737 3HCDH_N: 3-hydroxyacy 93.3 0.096 2.1E-06 52.5 4.4 31 45-75 2-32 (180)
393 smart00054 EFh EF-hand, calciu 93.3 0.11 2.4E-06 33.8 3.3 28 670-697 1-28 (29)
394 cd05023 S-100A11 S-100A11: S-1 93.2 0.27 5.9E-06 43.5 6.6 27 671-697 11-39 (89)
395 COG0446 HcaD Uncharacterized N 93.2 0.099 2.1E-06 57.8 4.7 39 42-80 136-174 (415)
396 COG1206 Gid NAD(FAD)-utilizing 93.1 0.12 2.7E-06 55.8 5.0 35 42-76 3-37 (439)
397 PF05042 Caleosin: Caleosin re 93.1 0.29 6.2E-06 48.4 7.1 40 633-672 7-46 (174)
398 PF09279 EF-hand_like: Phospho 93.1 0.35 7.6E-06 41.8 7.1 71 634-705 1-77 (83)
399 KOG2562|consensus 93.0 0.66 1.4E-05 52.1 10.5 92 635-729 280-403 (493)
400 PF01593 Amino_oxidase: Flavin 93.0 0.088 1.9E-06 57.8 3.8 54 453-513 212-265 (450)
401 KOG4251|consensus 92.9 0.66 1.4E-05 48.0 9.5 73 584-661 96-168 (362)
402 PF01210 NAD_Gly3P_dh_N: NAD-d 92.8 0.11 2.4E-06 50.7 3.8 31 45-75 2-32 (157)
403 KOG1955|consensus 92.8 0.15 3.3E-06 57.1 5.3 81 624-706 222-305 (737)
404 KOG0751|consensus 92.5 0.57 1.2E-05 52.8 9.2 94 633-729 108-222 (694)
405 KOG2643|consensus 92.3 0.11 2.4E-06 57.7 3.4 82 634-715 234-347 (489)
406 TIGR03862 flavo_PP4765 unchara 92.3 0.46 9.9E-06 53.2 8.4 68 448-523 84-161 (376)
407 smart00027 EH Eps15 homology d 92.0 0.68 1.5E-05 41.2 7.7 58 669-729 10-71 (96)
408 cd00052 EH Eps15 homology doma 91.9 0.29 6.2E-06 39.8 4.7 55 672-729 2-60 (67)
409 COG4716 Myosin-crossreactive a 91.8 1.7 3.7E-05 48.0 11.5 39 43-81 23-65 (587)
410 COG5044 MRS6 RAB proteins gera 91.7 0.22 4.8E-06 54.7 4.8 40 42-81 6-45 (434)
411 PF03721 UDPG_MGDP_dh_N: UDP-g 91.6 0.2 4.3E-06 50.5 4.2 31 45-75 3-33 (185)
412 PRK04965 NADH:flavorubredoxin 91.5 0.22 4.8E-06 55.4 4.8 33 43-75 3-37 (377)
413 PRK06129 3-hydroxyacyl-CoA deh 91.4 0.2 4.4E-06 54.3 4.3 32 44-75 4-35 (308)
414 TIGR03169 Nterm_to_SelD pyridi 91.3 0.19 4.1E-06 55.4 4.0 61 451-522 192-252 (364)
415 PRK01438 murD UDP-N-acetylmura 91.3 0.22 4.8E-06 57.3 4.7 32 44-75 18-49 (480)
416 TIGR02354 thiF_fam2 thiamine b 91.2 0.26 5.7E-06 50.3 4.6 37 41-77 20-57 (200)
417 COG0569 TrkA K+ transport syst 91.1 0.23 5.1E-06 51.5 4.1 32 44-75 2-33 (225)
418 KOG1439|consensus 90.9 0.13 2.8E-06 57.0 2.2 41 41-81 3-43 (440)
419 KOG4405|consensus 90.8 0.23 5.1E-06 55.0 4.0 40 41-80 7-46 (547)
420 PRK07066 3-hydroxybutyryl-CoA 90.7 0.27 5.8E-06 53.9 4.3 32 44-75 9-40 (321)
421 PRK05708 2-dehydropantoate 2-r 90.3 0.32 6.9E-06 52.8 4.5 31 44-74 4-34 (305)
422 PRK02705 murD UDP-N-acetylmura 90.3 0.28 6.1E-06 56.0 4.3 33 44-76 2-34 (459)
423 PRK08293 3-hydroxybutyryl-CoA 90.2 0.31 6.7E-06 52.3 4.3 32 44-75 5-36 (287)
424 PRK09260 3-hydroxybutyryl-CoA 90.2 0.29 6.3E-06 52.5 4.1 32 44-75 3-34 (288)
425 PRK07819 3-hydroxybutyryl-CoA 90.1 0.3 6.6E-06 52.5 4.1 32 44-75 7-38 (286)
426 KOG1800|consensus 90.1 0.4 8.7E-06 52.9 4.9 41 41-81 19-61 (468)
427 PRK06522 2-dehydropantoate 2-r 89.8 0.36 7.8E-06 51.7 4.4 30 45-74 3-32 (304)
428 KOG0041|consensus 89.8 0.54 1.2E-05 47.4 5.1 30 669-698 99-128 (244)
429 cd05030 calgranulins Calgranul 89.7 0.52 1.1E-05 41.5 4.6 26 671-696 10-37 (88)
430 PRK06249 2-dehydropantoate 2-r 89.6 0.46 1E-05 51.6 5.2 32 44-75 7-38 (313)
431 PF13738 Pyr_redox_3: Pyridine 89.5 0.38 8.2E-06 48.0 4.0 35 42-76 167-201 (203)
432 KOG0035|consensus 89.4 0.93 2E-05 55.1 7.7 75 624-698 738-817 (890)
433 COG4529 Uncharacterized protei 89.3 0.51 1.1E-05 53.7 5.2 37 43-79 2-42 (474)
434 KOG2562|consensus 89.1 1.4 3E-05 49.7 8.2 129 585-729 307-465 (493)
435 PRK15116 sulfur acceptor prote 89.0 0.5 1.1E-05 50.5 4.7 39 41-79 29-68 (268)
436 PRK07688 thiamine/molybdopteri 89.0 0.52 1.1E-05 52.1 5.0 37 41-77 23-60 (339)
437 PRK07530 3-hydroxybutyryl-CoA 88.9 0.48 1E-05 50.9 4.5 31 44-74 6-36 (292)
438 PRK12921 2-dehydropantoate 2-r 88.9 0.45 9.7E-06 51.1 4.3 30 44-73 2-31 (305)
439 PRK07251 pyridine nucleotide-d 88.8 0.47 1E-05 53.9 4.6 34 44-77 159-192 (438)
440 PRK08229 2-dehydropantoate 2-r 88.7 0.45 9.7E-06 52.1 4.2 31 44-74 4-34 (341)
441 PRK12475 thiamine/molybdopteri 88.6 0.54 1.2E-05 51.9 4.7 38 42-79 24-62 (338)
442 PRK12309 transaldolase/EF-hand 88.5 1.3 2.7E-05 50.0 7.6 53 662-714 327-385 (391)
443 KOG3555|consensus 88.4 1.6 3.5E-05 47.3 7.9 81 627-713 244-324 (434)
444 PRK06467 dihydrolipoamide dehy 88.3 0.52 1.1E-05 54.3 4.6 34 43-76 175-208 (471)
445 PRK14106 murD UDP-N-acetylmura 88.2 0.53 1.2E-05 53.6 4.6 33 43-75 6-38 (450)
446 PRK06035 3-hydroxyacyl-CoA deh 88.2 0.5 1.1E-05 50.8 4.2 32 44-75 5-36 (291)
447 PRK07846 mycothione reductase; 88.1 0.56 1.2E-05 53.7 4.7 34 43-76 167-200 (451)
448 PF00899 ThiF: ThiF family; I 88.1 0.57 1.2E-05 44.3 4.0 38 42-79 2-40 (135)
449 COG1748 LYS9 Saccharopine dehy 87.9 0.57 1.2E-05 52.4 4.4 31 44-74 3-34 (389)
450 cd00213 S-100 S-100: S-100 dom 87.9 1.8 4E-05 37.6 6.8 60 669-728 8-77 (88)
451 PRK05808 3-hydroxybutyryl-CoA 87.8 0.53 1.1E-05 50.3 4.0 31 44-74 5-35 (282)
452 cd05024 S-100A10 S-100A10: A s 87.8 1.6 3.4E-05 39.0 6.2 53 671-736 10-63 (91)
453 TIGR01421 gluta_reduc_1 glutat 87.8 0.59 1.3E-05 53.5 4.6 34 43-76 167-200 (450)
454 KOG4578|consensus 87.7 0.45 9.7E-06 51.1 3.2 64 632-697 332-398 (421)
455 cd01487 E1_ThiF_like E1_ThiF_l 87.7 0.68 1.5E-05 46.1 4.5 33 45-77 2-35 (174)
456 PF01488 Shikimate_DH: Shikima 87.7 0.86 1.9E-05 43.3 4.9 34 41-74 11-45 (135)
457 PF05517 p25-alpha: p25-alpha 87.7 3.2 6.9E-05 40.6 9.0 78 635-712 4-88 (154)
458 cd01483 E1_enzyme_family Super 87.6 0.77 1.7E-05 43.8 4.6 35 45-79 2-37 (143)
459 cd00252 SPARC_EC SPARC_EC; ext 87.5 1 2.2E-05 42.0 5.1 30 666-695 45-74 (116)
460 PRK06153 hypothetical protein; 87.4 0.66 1.4E-05 51.8 4.5 62 13-77 147-212 (393)
461 TIGR03385 CoA_CoA_reduc CoA-di 87.2 0.67 1.4E-05 52.4 4.5 35 43-77 138-172 (427)
462 TIGR01470 cysG_Nterm siroheme 87.2 0.74 1.6E-05 47.2 4.4 32 43-74 10-41 (205)
463 cd05292 LDH_2 A subgroup of L- 87.1 0.72 1.6E-05 50.2 4.6 32 44-75 2-35 (308)
464 TIGR02355 moeB molybdopterin s 87.1 0.81 1.7E-05 48.1 4.8 39 41-79 23-62 (240)
465 KOG1029|consensus 86.9 0.77 1.7E-05 54.2 4.7 68 627-696 189-256 (1118)
466 PRK13512 coenzyme A disulfide 86.9 0.69 1.5E-05 52.7 4.5 34 43-76 149-182 (438)
467 PRK05249 soluble pyridine nucl 86.7 0.76 1.6E-05 52.5 4.7 34 43-76 176-209 (461)
468 PRK06718 precorrin-2 dehydroge 86.5 0.84 1.8E-05 46.6 4.4 33 42-74 10-42 (202)
469 PRK06292 dihydrolipoamide dehy 86.4 0.78 1.7E-05 52.4 4.6 35 43-77 170-204 (460)
470 TIGR00518 alaDH alanine dehydr 86.2 0.79 1.7E-05 51.2 4.4 33 42-74 167-199 (370)
471 PRK05476 S-adenosyl-L-homocyst 86.2 0.81 1.8E-05 52.0 4.5 35 42-76 212-246 (425)
472 PRK06719 precorrin-2 dehydroge 86.2 0.93 2E-05 44.4 4.4 32 42-73 13-44 (157)
473 TIGR01763 MalateDH_bact malate 86.1 0.85 1.8E-05 49.6 4.4 30 44-73 3-33 (305)
474 PF01262 AlaDh_PNT_C: Alanine 85.8 1.1 2.3E-05 44.3 4.6 32 43-74 21-52 (168)
475 PF02254 TrkA_N: TrkA-N domain 85.7 1.2 2.6E-05 40.5 4.6 31 45-75 1-31 (116)
476 TIGR01316 gltA glutamate synth 85.7 0.92 2E-05 51.9 4.7 33 43-75 273-305 (449)
477 TIGR02356 adenyl_thiF thiazole 85.7 1.1 2.3E-05 45.8 4.7 37 41-77 20-57 (202)
478 PRK06130 3-hydroxybutyryl-CoA 85.6 0.95 2E-05 49.0 4.6 32 44-75 6-37 (311)
479 PRK08644 thiamine biosynthesis 85.6 1.1 2.3E-05 46.3 4.6 38 41-78 27-65 (212)
480 PLN02545 3-hydroxybutyryl-CoA 85.6 0.96 2.1E-05 48.6 4.5 31 45-75 7-37 (295)
481 PRK14620 NAD(P)H-dependent gly 85.4 0.98 2.1E-05 49.3 4.6 31 44-74 2-32 (326)
482 PRK04148 hypothetical protein; 85.3 1.1 2.3E-05 42.9 4.2 34 42-76 17-50 (134)
483 PRK08328 hypothetical protein; 85.3 1.1 2.5E-05 46.6 4.8 36 42-77 27-63 (231)
484 TIGR03452 mycothione_red mycot 85.3 0.96 2.1E-05 51.8 4.6 34 43-76 170-203 (452)
485 COG1249 Lpd Pyruvate/2-oxoglut 85.3 0.98 2.1E-05 51.9 4.6 34 44-77 175-208 (454)
486 PRK06327 dihydrolipoamide dehy 85.2 0.98 2.1E-05 52.0 4.7 34 43-76 184-217 (475)
487 PRK14618 NAD(P)H-dependent gly 85.1 1 2.2E-05 49.2 4.5 31 44-74 6-36 (328)
488 PRK12770 putative glutamate sy 84.7 1.1 2.3E-05 49.5 4.5 32 44-75 174-206 (352)
489 PF13241 NAD_binding_7: Putati 84.7 0.79 1.7E-05 41.4 2.9 34 42-75 7-40 (103)
490 PRK12831 putative oxidoreducta 84.7 1.1 2.3E-05 51.7 4.6 33 43-75 282-314 (464)
491 PRK00094 gpsA NAD(P)H-dependen 84.6 1.1 2.5E-05 48.4 4.6 31 44-74 3-33 (325)
492 TIGR03736 PRTRC_ThiF PRTRC sys 84.6 1.1 2.3E-05 47.3 4.2 37 41-77 10-57 (244)
493 TIGR02279 PaaC-3OHAcCoADH 3-hy 84.5 1.1 2.3E-05 52.3 4.5 32 44-75 7-38 (503)
494 PRK10262 thioredoxin reductase 84.5 1.2 2.6E-05 48.3 4.6 33 43-75 147-179 (321)
495 PRK11064 wecC UDP-N-acetyl-D-m 84.3 1 2.2E-05 51.1 4.2 32 44-75 5-36 (415)
496 TIGR01424 gluta_reduc_2 glutat 84.2 1.2 2.6E-05 50.9 4.7 33 44-76 168-200 (446)
497 PRK13748 putative mercuric red 84.1 1.2 2.7E-05 52.1 5.0 33 43-75 271-303 (561)
498 PRK05690 molybdopterin biosynt 84.1 1.3 2.8E-05 46.6 4.6 37 41-77 31-68 (245)
499 TIGR03467 HpnE squalene-associ 84.1 2.3 4.9E-05 47.3 6.8 56 452-513 199-254 (419)
500 KOG2304|consensus 84.0 0.96 2.1E-05 46.7 3.4 34 42-75 11-44 (298)
No 1
>KOG0042|consensus
Probab=100.00 E-value=4.2e-53 Score=459.96 Aligned_cols=437 Identities=64% Similarity=1.015 Sum_probs=380.2
Q ss_pred ccccCCCCCCchHHHhhhccCCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccceechhHHHHHHh
Q psy8270 20 PLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAI 99 (737)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~~~~~~~~~~~~~ 99 (737)
..+.++++|+|++.+.++....+|||+|||||++|.+||+.++.||+||++||+++|++|+||+|++++|+|+||+++++
T Consensus 45 ~~~~~~~~PsRe~~l~~l~~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi 124 (680)
T KOG0042|consen 45 EGPSKASLPSREDLLEALKSTHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAI 124 (680)
T ss_pred CCCCCCCCCCHHHHHHHhhcCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHhhhcCCCcCceeecccCccccccCCCCCCCccccccceeeeecCCCeeEeeCCcchhhHhhHHHHH
Q psy8270 100 MNLDIEQYRMVKEALHERSIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSPSNLVTIAGGKWTTYRAMASESI 179 (737)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (737)
++++.++++++++.+.|+. .++
T Consensus 125 ~~lD~~qyrlV~eaL~ER~----------------------------------------~ll------------------ 146 (680)
T KOG0042|consen 125 SNLDYEQYRLVKEALNERA----------------------------------------NLL------------------ 146 (680)
T ss_pred HhcCHHHHHHHHHHHHHHH----------------------------------------HHh------------------
Confidence 9999999999999997655 111
Q ss_pred HHHHhhhccccCCCCcccccchhhceeeecCCccchhhhhhhhhHHHHHhhccccCCCCCCCccccccccCCCCCChhhH
Q psy8270 180 DALIEGKFNKAGAEYPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKPKYRDCQTDGLLIEGAHGWTPTMY 259 (737)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (737)
T Consensus 147 -------------------------------------------------------------------------------- 146 (680)
T KOG0042|consen 147 -------------------------------------------------------------------------------- 146 (680)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcCCchhHHHHHHHhhcccHHHHHHHHHhhCCCCCcccccCCCCCcchHHHHHHHHHHhhhchhhHHHHHhhhhh
Q psy8270 260 IRLVQDFGLECETAQHLSNSYGDRAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVREYARTAIDMVARRLRLAF 339 (737)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 339 (737)
+.+.||.+ +
T Consensus 147 -----------e~APhLs~----------------------------~-------------------------------- 155 (680)
T KOG0042|consen 147 -----------EIAPHLSQ----------------------------P-------------------------------- 155 (680)
T ss_pred -----------hcCccccC----------------------------C--------------------------------
Confidence 22222222 1
Q ss_pred hchHHHHhhHHHHHHHHHHhhcccHHHHHHHHhhhhHHHHHHHHhhcccccccccchhhhhHHHHHhhhccCCCCcceee
Q psy8270 340 LNVQAAQEALPMIIEIMAEELKWSKEEQEAAQKALPMIIEIMAEELKWSKEEQEIPYYWVGIKAYDFVAGSKTVKSSYYL 419 (737)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 419 (737)
++ +|-....| | .+||||+|+++|+++++.+...+++++
T Consensus 156 ---------lP----ImlPvy~w------------------------w-----QvpYyw~G~K~YD~vAG~k~Lk~S~~l 193 (680)
T KOG0042|consen 156 ---------LP----IMLPVYKW------------------------W-----QVPYYWVGLKIYDLVAGSKNLKSSYFL 193 (680)
T ss_pred ---------cc----eeeehhhh------------------------h-----hhhheeecceeeeeeccccccccceee
Confidence 00 22223445 7 899999999999999999999999999
Q ss_pred CHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEE
Q psy8270 420 SKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWD 499 (737)
Q Consensus 420 ~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~ 499 (737)
+++++.+.||.|..+.++|+++|+||+.|..+|+.+++.+|.++|+.+.++.+|.++..+++|++.|++++|..||+.+.
T Consensus 194 Sk~~alE~fPmL~~~~L~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~ 273 (680)
T KOG0042|consen 194 SKKEALEIFPMLRKDNLKGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYE 273 (680)
T ss_pred cHHHHHHhCccccccCceeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999878899999999999999999
Q ss_pred EEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCCCCCcEEEEeecCCeEeeecCCCCCC
Q psy8270 500 LKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWLKHTIAGTTDLPCD 579 (737)
Q Consensus 500 I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dgr~iy~~P~~g~~ivG~Tde~~~ 579 (737)
|+|+.||||||++++.+.+|-....+..+.|.-|.|++++..+-+....++-|.+.|||++|+.||.|.+++|+|+.|..
T Consensus 274 I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~~pSsGvHIVlP~yY~P~~mGlldP~TsDgRViFflPWqg~TIaGTTD~pt~ 353 (680)
T KOG0042|consen 274 IRAKVVVNATGPFSDSIRKMDDEDAKPICVPSSGVHIVLPGYYCPENMGLLDPKTSDGRVIFFLPWQGKTIAGTTDIPTS 353 (680)
T ss_pred EEEEEEEeCCCCccHHHHhhcccccCceeccCCceeEEcccccCCcccccccCCCCCCcEEEEeccCCceeeccCCCCCC
Confidence 99999999999999999999888888889999999999999888888889999999999999999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHh---------------------------ccc-------------------------------
Q psy8270 580 VTHHPKPTEDEIMFILQEK---------------------------QLK------------------------------- 601 (737)
Q Consensus 580 ~~~d~~pteeeI~~Lls~~---------------------------D~d------------------------------- 601 (737)
.+..+.|++++++++++++ |++
T Consensus 354 v~~~P~PtE~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaGGKWTT 433 (680)
T KOG0042|consen 354 VTHSPTPTEDDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAGGKWTT 433 (680)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCCCeEEEecCcchh
Confidence 7889999999999999981 000
Q ss_pred --------------------------------------------------------------------------------
Q psy8270 602 -------------------------------------------------------------------------------- 601 (737)
Q Consensus 602 -------------------------------------------------------------------------------- 601 (737)
T Consensus 434 yR~MAEeTVd~aI~~~~lk~~~~~cvT~~l~l~Ga~~wt~~~~~~LvQdyg~e~~vA~hLs~tYG~rA~~Va~~~k~tgk 513 (680)
T KOG0042|consen 434 YRHMAEETVDAAIKAGDLKPARKPCVTKKLKLEGAEGWTPNMYIRLVQDYGMESDVAQHLSQTYGDRAFRVAKMAKSTGK 513 (680)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcccccceEEeccCCCcHHHHHHHHHHhCCcHHHHHHHHHhhcchHHHHHHHHHhcCC
Confidence
Q ss_pred ------------------------------------------------hhhHHHHHHHHHHhhhhccccccCCCCHHHHH
Q psy8270 602 ------------------------------------------------EASDFLANEMGQMVNRASRDKIPINLTKEEIN 633 (737)
Q Consensus 602 ------------------------------------------------~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~ 633 (737)
.-+.|+...|.......+...++..++++++.
T Consensus 514 k~Pivg~rl~~~fpyleAEv~y~v~~e~a~~~~Dv~arr~r~~~~q~~~ar~fl~~~mg~~~~~~~~~~~~i~~~~~~~~ 593 (680)
T KOG0042|consen 514 KWPIVGKRLHPEFPYLEAEVRYGVVREYACTPVDVIARRLREKKKQIEYARTFLNSEMGLSKESTSQMSIPIKLTPEDFL 593 (680)
T ss_pred cCccccccccCCCCchHHHHHhhhhHhhhccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccCHHHHH
Confidence 00001111111111122334456677889999
Q ss_pred HHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcCCCCCHHH
Q psy8270 634 QYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSR 707 (737)
Q Consensus 634 ~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~~~G~is~~e 707 (737)
.++..|..+|.|+.|+++..++.+.|++.+.+++++.+++++.+.|.+.+|.+...||.+++..+..|..+-..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~~~R 667 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTEGSR 667 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999988886643
No 2
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=6.8e-37 Score=343.67 Aligned_cols=204 Identities=35% Similarity=0.542 Sum_probs=182.5
Q ss_pred ccchhhhhHHHHHhhhc-cCCCCcceeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCc
Q psy8270 393 EIPYYWVGIKAYDFVAG-SKTVKSSYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHV 471 (737)
Q Consensus 393 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt 471 (737)
..+++..|+.+|+.+++ .+..+..+.++.++...+.|.++.+.+.|++.|+|+++|+++++..++..|.++|+++++++
T Consensus 106 ~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~ 185 (532)
T COG0578 106 DAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAANARDAAEHGAEILTYT 185 (532)
T ss_pred cchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHHHHHHHhcccchhhcc
Confidence 55677889999999999 67788899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc--ccccccceEEEEecCCCCCCCcee
Q psy8270 472 RVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ--KICVPSSGVHIVLPGYYSPDQMGL 549 (737)
Q Consensus 472 ~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp--~~i~p~KG~~lvv~~~~~~~~~~i 549 (737)
+|+++.++ +| ++||++.|..||+...++|+.||||||+|+++++++.+...+ ..++|.||.|++++. ..+....+
T Consensus 186 ~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsHlVv~~-~~~~~~a~ 262 (532)
T COG0578 186 RVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSHLVVDK-KFPINQAV 262 (532)
T ss_pred eeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceEEEecc-cCCCCceE
Confidence 99999998 66 999999998899999999999999999999999999865533 358999999999998 44445555
Q ss_pred eecCCCCCcEEEEeecCCeEeeecCCCCCCC-CCCCCCCHHHHHHHHHHhc
Q psy8270 550 LDPSTSDGRVIFFLPWLKHTIAGTTDLPCDV-THHPKPTEDEIMFILQEKQ 599 (737)
Q Consensus 550 ~~~~~~Dgr~iy~~P~~g~~ivG~Tde~~~~-~~d~~pteeeI~~Lls~~D 599 (737)
+.+.+.|++++|++||.+.+++|+|+..... +.++.+++++++++++..+
T Consensus 263 ~~~~~~d~r~~f~iP~~~~~liGTTD~~~~~~~~~~~~~~eEidyll~~~~ 313 (532)
T COG0578 263 INRCRKDGRIVFAIPYEGKTLIGTTDTDYDGDPEDPRITEEEIDYLLDAVN 313 (532)
T ss_pred EeecCCCCceEEEecCCCCEEeeccccccCCCcccCCCCHHHHHHHHHHHH
Confidence 5555559999999999998899999988776 8899999999999999963
No 3
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=100.00 E-value=9.1e-35 Score=340.03 Aligned_cols=225 Identities=52% Similarity=0.882 Sum_probs=179.1
Q ss_pred hhhhhHHHHHhhhccCCCCcceeeCHhhHHHHCCCCCcc----cceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCc
Q psy8270 396 YYWVGIKAYDFVAGSKTVKSSYYLSKKNALELFPMIRGD----KLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHV 471 (737)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~----~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt 471 (737)
+++.+...|+.+.+....+..++++++++.+++|.++.+ .+.|++.|++|++||.+++.+++..|+++|+++++++
T Consensus 174 ~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~ 253 (627)
T PLN02464 174 YYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYDGQMNDSRLNVALACTAALAGAAVLNYA 253 (627)
T ss_pred HHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCCCccccccceeEEEEecCcEEcHHHHHHHHHHHHHhCCcEEEecc
Confidence 345556666666555555567899999999999999766 6889999999999999999999999999999999999
Q ss_pred eEEEEEEcC-CCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceee
Q psy8270 472 RVTNLIKDD-KGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLL 550 (737)
Q Consensus 472 ~V~~L~~d~-~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~ 550 (737)
+|+++..++ +|++++|++.+..+++...+.|+.||||||+|++.++++++......+.|.||+|++++....+....++
T Consensus 254 ~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~~~~~I~p~kG~hlvl~~~~~~~~~~~i 333 (627)
T PLN02464 254 EVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGKAKPMICPSSGVHIVLPDYYSPEGMGLI 333 (627)
T ss_pred EEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCcCCCceEeeeeEEEecccccCCCCceEE
Confidence 999998763 3789999987765666557899999999999999999998754444589999999999765434343455
Q ss_pred ecCCCCCcEEEEeecCCeEeeecCCCCCCCCCCCCCCHHHHHHHHHHhccchhhHHHH-HHHHHHhhhhccccccC
Q psy8270 551 DPSTSDGRVIFFLPWLKHTIAGTTDLPCDVTHHPKPTEDEIMFILQEKQLKEASDFLA-NEMGQMVNRASRDKIPI 625 (737)
Q Consensus 551 ~~~~~Dgr~iy~~P~~g~~ivG~Tde~~~~~~d~~pteeeI~~Lls~~D~d~f~eFL~-~~~~~~~~~~~~~~i~~ 625 (737)
++.+.+++.+|++|+.|.+++|+|+++...+.++.+++++++++++.. ..+++ .+-...+...+.+.+|.
T Consensus 334 ~~~~~dgr~~~~~P~~g~~liGtTd~~~~~~~~~~~t~~ei~~Ll~~a-----~~~~~~~l~~~~v~~~waG~RPl 404 (627)
T PLN02464 334 VPKTKDGRVVFMLPWLGRTVAGTTDSKTPITMLPEPHEDEIQFILDAI-----SDYLNVKVRRSDVLSAWSGIRPL 404 (627)
T ss_pred ecCCCCCCEEEEEecCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHH-----HHhhCCCCChhhEEEEEEeEEee
Confidence 666679999999999888999999988766677889999999999984 44543 12223344666676664
No 4
>KOG0042|consensus
Probab=100.00 E-value=8.5e-34 Score=309.57 Aligned_cols=175 Identities=66% Similarity=1.162 Sum_probs=163.8
Q ss_pred hcCCCcCceeecccCccccccCCCCCCCccccccceeeeecCCCeeEeeCCcchhhHhhHHHHHHHHHhhhccccCCCCc
Q psy8270 116 ERSIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSPSNLVTIAGGKWTTYRAMASESIDALIEGKFNKAGAEYP 195 (737)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (737)
+..++|+||+++|||||||+.||++..++++++|+|.|+++++|||||+||||||||.||+++++++++.
T Consensus 379 ~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaGGKWTTyR~MAEeTVd~aI~~---------- 448 (680)
T KOG0042|consen 379 DVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAGGKWTTYRHMAEETVDAAIKA---------- 448 (680)
T ss_pred CcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCCCeEEEecCcchhHHHHHHHHHHHHHHh----------
Confidence 3458999999999999999999998889999999999999999999999999999999999988888763
Q ss_pred ccccchhhceeeecCCccchhhhhhhhhHHHHHhhccccCCCCCCCccccccccCCCCCChhhHHHHhhhcCCchhHHHH
Q psy8270 196 NLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKPKYRDCQTDGLLIEGAHGWTPTMYIRLVQDFGLECETAQH 275 (737)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (737)
..|+|--..|.|.++.++|+++|++++|++|+|++|++++.++|
T Consensus 449 ------------------------------------~~lk~~~~~cvT~~l~l~Ga~~wt~~~~~~LvQdyg~e~~vA~h 492 (680)
T KOG0042|consen 449 ------------------------------------GDLKPARKPCVTKKLKLEGAEGWTPNMYIRLVQDYGMESDVAQH 492 (680)
T ss_pred ------------------------------------CCCCCCCCcccccceEEeccCCCcHHHHHHHHHHhCCcHHHHHH
Confidence 34566667799999999999999999999999999999999999
Q ss_pred HHHhhcccHHHHHHHHHhhCCCCCcccccCCCCCcchHHHHHHHHH-HhhhchhhHHHHHhh
Q psy8270 276 LSNSYGDRAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLR 336 (737)
Q Consensus 276 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~ 336 (737)
|.+.||++++.++.+++.++++||..++.+++++||+++|++|++. |+.+++.|++.||.+
T Consensus 493 Ls~tYG~rA~~Va~~~k~tgkk~Pivg~rl~~~fpyleAEv~y~v~~e~a~~~~Dv~arr~r 554 (680)
T KOG0042|consen 493 LSQTYGDRAFRVAKMAKSTGKKWPIVGKRLHPEFPYLEAEVRYGVVREYACTPVDVIARRLR 554 (680)
T ss_pred HHHhhcchHHHHHHHHHhcCCcCccccccccCCCCchHHHHHhhhhHhhhccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965 999999999999966
No 5
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.97 E-value=3.4e-29 Score=289.56 Aligned_cols=196 Identities=26% Similarity=0.372 Sum_probs=156.1
Q ss_pred ceeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccC
Q psy8270 416 SYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTG 495 (737)
Q Consensus 416 ~~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg 495 (737)
.++++++++.+++|.++. .+.|++.+++|++||.+++.+++..|+++|++++++++|+++..+ ++++++|++.+..++
T Consensus 116 ~~~l~~~e~~~~eP~l~~-~~~ga~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g 193 (546)
T PRK11101 116 AEAIDPQQALILEPAVNP-ALIGAVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTG 193 (546)
T ss_pred cEEECHHHHHHhCCCcCc-cceEEEEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCC
Confidence 578999999999999964 478888888999999999999999999999999999999999987 788999998775556
Q ss_pred eeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeee--cCCCCCcEEEEeecCCeEeeec
Q psy8270 496 KEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLD--PSTSDGRVIFFLPWLKHTIAGT 573 (737)
Q Consensus 496 ~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~--~~~~Dgr~iy~~P~~g~~ivG~ 573 (737)
+...|.|+.||||||+|++.|+++.+.+.| +.|.||++++++.... ..++. +.+.++++ ++|+++.+++|+
T Consensus 194 ~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~--i~p~kG~~lv~~~~~~---~~vi~~~~~~~~~~~--~vp~~~~~liGt 266 (546)
T PRK11101 194 ETQEIHAPVVVNAAGIWGQHIAEYADLRIR--MFPAKGSLLIMDHRIN---NHVINRCRKPADADI--LVPGDTISLIGT 266 (546)
T ss_pred cEEEEECCEEEECCChhHHHHHHhcCCCCc--eeecceEEEEECCccC---ceeEeccCCCCCCCE--EEecCCEEEEee
Confidence 556899999999999999999998887666 8999999999976432 11221 12345553 568878889999
Q ss_pred CCCCC--CCCCCCCCCHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccccccC
Q psy8270 574 TDLPC--DVTHHPKPTEDEIMFILQEKQLKEASDFLANEMGQMVNRASRDKIPI 625 (737)
Q Consensus 574 Tde~~--~~~~d~~pteeeI~~Lls~~D~d~f~eFL~~~~~~~~~~~~~~~i~~ 625 (737)
|+++. +++.+..++.++++++++.. ..++|.+-...+...+.+.++.
T Consensus 267 T~~~~~~~~~~~~~~t~~~i~~Ll~~~-----~~l~P~l~~~~i~~~~aGvRPl 315 (546)
T PRK11101 267 TSTRIDYDQIDDNRVTAEEVDILLREG-----EKLAPVMAKTRILRAYAGVRPL 315 (546)
T ss_pred CCCCccCCCcCCCCCCHHHHHHHHHHH-----HHhCCCCCccCEEEEEEEeccC
Confidence 98654 34456789999999999984 4455444344466677777775
No 6
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=8e-29 Score=283.99 Aligned_cols=215 Identities=25% Similarity=0.386 Sum_probs=159.5
Q ss_pred hHHHHHhhhccCCCCcceeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEc
Q psy8270 400 GIKAYDFVAGSKTVKSSYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKD 479 (737)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d 479 (737)
|..+|+.+......+..+.++..++.+.+| + .+.+.+++.+.++++||.+++.+++..|+++|++++++++|+++..+
T Consensus 107 g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~-l-~~~~~~a~~~~dg~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~ 184 (502)
T PRK13369 107 GLFLYDHLGGRKRLPGTRTLDLRRDPEGAP-L-KPEYTKGFEYSDCWVDDARLVVLNALDAAERGATILTRTRCVSARRE 184 (502)
T ss_pred HHHHHHhccCCCCCCcceEechhhccccCC-c-hHhcCEEEEEcCeeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEc
Confidence 334444433333344567788777777777 5 34588899999999999999999999999999999999999999886
Q ss_pred CCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhh-cCCCccccccccceEEEEecCCCCCCCceeeecCCCCCc
Q psy8270 480 DKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRM-DDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGR 558 (737)
Q Consensus 480 ~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~-lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dgr 558 (737)
+ +.++|++.+.. ++...+.|+.||||||+|++.+.++ +|...+..+.|.||+|++++....... .+++ ...|++
T Consensus 185 -~-~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p~kG~~lv~~~~~~~~~-~~~~-~~~dgr 259 (502)
T PRK13369 185 -G-GLWRVETRDAD-GETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRLVKGSHIVVPKFWDGAQ-AYLF-QNPDKR 259 (502)
T ss_pred -C-CEEEEEEEeCC-CCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEEeeEEEEEeCCccCCCc-eEEE-eCCCCe
Confidence 3 45678777643 5556799999999999999999884 465443458999999999976543222 2333 356899
Q ss_pred EEEEeecC-CeEeeecCCCCCC-CCCCCCCCHHHHHHHHHHhccchhhHHHH-HHHHHHhhhhccccccCC
Q psy8270 559 VIFFLPWL-KHTIAGTTDLPCD-VTHHPKPTEDEIMFILQEKQLKEASDFLA-NEMGQMVNRASRDKIPIN 626 (737)
Q Consensus 559 ~iy~~P~~-g~~ivG~Tde~~~-~~~d~~pteeeI~~Lls~~D~d~f~eFL~-~~~~~~~~~~~~~~i~~~ 626 (737)
++|++|+. +.+++|+|+.+.. ++.+..+++++++++++.. ..+++ .+-...+...+.+.+|..
T Consensus 260 ~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~-----~~~~~~~l~~~~i~~~waGlRPl~ 325 (502)
T PRK13369 260 VIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAA-----NRYFKEKLRREDVVHSFSGVRPLF 325 (502)
T ss_pred EEEEEEecCCEEEEEecCccccCCCCCCCCCHHHHHHHHHHH-----HHhhCCCCCHhHEEEEeeceEEcC
Confidence 99999995 6888999997643 4567889999999999984 44542 233344566777877754
No 7
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.97 E-value=2.8e-28 Score=279.76 Aligned_cols=188 Identities=23% Similarity=0.364 Sum_probs=144.3
Q ss_pred CCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEec
Q psy8270 429 PMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINA 508 (737)
Q Consensus 429 p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a 508 (737)
|.++ +.+.+++.|+++++||.+++.+++..|+++|++++++++|+++..+ ++ .++|++.+..+++...|.|+.||||
T Consensus 135 ~~L~-~~l~g~~~~~dg~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~~VVnA 211 (508)
T PRK12266 135 SPLK-PEITRGFEYSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRARALVNA 211 (508)
T ss_pred CCcc-hhhcEEEEEcCcccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcCEEEEC
Confidence 5564 4478889999999999999999999999999999999999999876 44 4677776644565567999999999
Q ss_pred CCCChhhhhhh-cCCCccccccccceEEEEecCCCCCCCceeeecCCCCCcEEEEeec-CCeEeeecCCCCC-CCCCCCC
Q psy8270 509 TGPFTDSIRRM-DDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPW-LKHTIAGTTDLPC-DVTHHPK 585 (737)
Q Consensus 509 ~Gaws~~L~~~-lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dgr~iy~~P~-~g~~ivG~Tde~~-~~~~d~~ 585 (737)
||+|++.++++ +|...+..+.|.||++++++...... ..+++ ...||+++|++|+ ++.+++|+|+.+. ..+.+..
T Consensus 212 aG~wa~~l~~~~~g~~~~~~i~p~kG~~lvl~~~~~~~-~~~~~-~~~dgr~v~~~P~~~g~~liGttd~~~~~~~~~~~ 289 (508)
T PRK12266 212 AGPWVKQFLDDGLGLPSPYGIRLVKGSHIVVPRLFDHD-QAYIL-QNPDGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVA 289 (508)
T ss_pred CCccHHHHHhhccCCCCCcceeeeeeEEEEECCcCCCC-cEEEE-eCCCCCEEEEEEeCCCeEEEecCCCCCCCCCCCCC
Confidence 99999999875 46544445899999999997654332 22333 3578999999999 5799999998764 3456778
Q ss_pred CCHHHHHHHHHHhccchhhHHHH-HHHHHHhhhhccccccCC
Q psy8270 586 PTEDEIMFILQEKQLKEASDFLA-NEMGQMVNRASRDKIPIN 626 (737)
Q Consensus 586 pteeeI~~Lls~~D~d~f~eFL~-~~~~~~~~~~~~~~i~~~ 626 (737)
+++++++++++.. ..+++ .+-...+...+.+.++..
T Consensus 290 ~~~~~i~~Ll~~~-----~~~~p~~l~~~~ii~~waG~RPl~ 326 (508)
T PRK12266 290 ISEEEIDYLCKVV-----NRYFKKQLTPADVVWTYSGVRPLC 326 (508)
T ss_pred CCHHHHHHHHHHH-----HHhcCCCCCHHHEEEEeeeeEeeC
Confidence 8999999999884 44442 222334566777777753
No 8
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.92 E-value=1.8e-23 Score=240.71 Aligned_cols=198 Identities=26% Similarity=0.353 Sum_probs=157.2
Q ss_pred ceeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccC
Q psy8270 416 SYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTG 495 (737)
Q Consensus 416 ~~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg 495 (737)
.++++++++.+++|.++. .+.|++.+++|++||.+++.+++..|+++|++++++++|+++..+ ++++++|++.+..++
T Consensus 95 ~~~l~~~e~~~~~P~l~~-~~~ga~~~~dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g 172 (516)
T TIGR03377 95 AEEIDPAEALRLEPNLNP-DLIGAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTG 172 (516)
T ss_pred ceEECHHHHHHHCCCCCh-hheEEEEeCCcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCC
Confidence 578999999999999965 478888888999999999999999999999999999999999987 788999998765556
Q ss_pred eeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCCCCCcEEEEeecCCeEeeecCC
Q psy8270 496 KEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWLKHTIAGTTD 575 (737)
Q Consensus 496 ~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dgr~iy~~P~~g~~ivG~Td 575 (737)
+...|.|+.||||||+|++.|++++|.+.+ +.|.||++++++..........+ +.+.+++ |++|+++.+++|+|+
T Consensus 173 ~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~--i~p~kG~~lv~~~~~~~~~~~~~-~~~~~g~--~~~P~~~~~liGtT~ 247 (516)
T TIGR03377 173 EEERIEAQVVINAAGIWAGRIAEYAGLDIR--MFPAKGALLIMNHRINNTVINRC-RKPSDAD--ILVPGDTISIIGTTS 247 (516)
T ss_pred cEEEEEcCEEEECCCcchHHHHHhcCCCCc--eecceEEEEEECCcccccccccc-cCCCCCc--EEEECCCeEEEecCC
Confidence 556799999999999999999999988666 89999999999764322111111 1234565 467998899999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccccccC
Q psy8270 576 LPCDVTHHPKPTEDEIMFILQEKQLKEASDFLANEMGQMVNRASRDKIPI 625 (737)
Q Consensus 576 e~~~~~~d~~pteeeI~~Lls~~D~d~f~eFL~~~~~~~~~~~~~~~i~~ 625 (737)
....++.+..++.++++++++.. ..++|.+-...+...+.+.++.
T Consensus 248 ~~~~~~~~~~~~~~~v~~ll~~~-----~~~~P~l~~~~i~~~~aGvRPl 292 (516)
T TIGR03377 248 ERIDDPDDLPVTQEEVDVLLREG-----AKLAPMLAQTRILRAFAGVRPL 292 (516)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH-----HHhCcccccCCEEEEEeecccc
Confidence 87666667889999999998884 4555433333455666676654
No 9
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.91 E-value=1.1e-22 Score=219.79 Aligned_cols=151 Identities=25% Similarity=0.382 Sum_probs=117.8
Q ss_pred cceeeCHhhHHHHCCCCCcccceeEEEec-ceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecc
Q psy8270 415 SSYYLSKKNALELFPMIRGDKLCGAIVYY-DGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDEL 493 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~~~~g~~~~~-~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~ 493 (737)
..+.++++++.+.+|.+. +...+++..+ .+.+|+.+++.+|...+++.|++++++++|++|..+ ++++.||++.+
T Consensus 112 ~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~-- 187 (358)
T PF01266_consen 112 PYELLSPEELRELFPFLN-PRIEGGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSD-- 187 (358)
T ss_dssp TEEEEEHHHHHHHSTTSS-TTTEEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETT--
T ss_pred cccccchhhhhhhhcccc-cchhhhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccc--
Confidence 467899999999999997 4455555555 456899999999999999999999999999999998 78888898643
Q ss_pred cCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCC--CCCcEEEEeecCCeEee
Q psy8270 494 TGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPST--SDGRVIFFLPWLKHTIA 571 (737)
Q Consensus 494 tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~--~Dgr~iy~~P~~g~~iv 571 (737)
+ .+.||.||+|+|+|+..|+++++...+ +.|.+++++.++.........+..... .+....|+.|+.+.+++
T Consensus 188 ---g-~i~ad~vV~a~G~~s~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~i 261 (358)
T PF01266_consen 188 ---G-EIRADRVVLAAGAWSPQLLPLLGLDLP--LRPVRGQVLVLEPPESPLAPAILFPPVIFGPSDGVYIRPRPGGVLI 261 (358)
T ss_dssp ---E-EEEECEEEE--GGGHHHHHHTTTTSST--EEEEEEEEEEEEGCCSGSSSEEEEEEECESSCTEEEEEEETTEEEE
T ss_pred ---c-ccccceeEecccccceeeeeccccccc--ccccceEEEEEccCCcccccccccccccccccccceeccccccccc
Confidence 3 499999999999999999999988776 889999999998755444333322111 23356788888898889
Q ss_pred ecCC
Q psy8270 572 GTTD 575 (737)
Q Consensus 572 G~Td 575 (737)
|+++
T Consensus 262 g~~~ 265 (358)
T PF01266_consen 262 GTAD 265 (358)
T ss_dssp EESE
T ss_pred cccc
Confidence 9555
No 10
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.91 E-value=1.9e-22 Score=224.38 Aligned_cols=151 Identities=20% Similarity=0.149 Sum_probs=114.8
Q ss_pred ceeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccC
Q psy8270 416 SYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTG 495 (737)
Q Consensus 416 ~~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg 495 (737)
.++++++++.+++|.+. ...+.+.+.+|++++..++.+|.+.+++.|++++++++|.++..+ ++++ .|++.+ +
T Consensus 117 ~~~l~~~el~~~~P~l~--~~~al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~---g 189 (393)
T PRK11728 117 VERLDAEELREREPNIR--GLGAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQ---G 189 (393)
T ss_pred EEEeCHHHHHHhCCCcc--ccceEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECC---C
Confidence 57899999999999885 245556667788999999999999999999999999999999876 4443 454321 2
Q ss_pred eeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCCCC---CcEEEEeec-CCeEee
Q psy8270 496 KEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSD---GRVIFFLPW-LKHTIA 571 (737)
Q Consensus 496 ~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~D---gr~iy~~P~-~g~~iv 571 (737)
.+.|+.||+|+|+|++.+++.+|.+.+..+.|.||+++.++.........++++.+.. ...+|++|+ +|++++
T Consensus 190 ---~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~ 266 (393)
T PRK11728 190 ---EYEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTV 266 (393)
T ss_pred ---EEEeCEEEECCCcchHHHHHHhCCCCCCceEEeeeEEEEeccccccccCCceecCCCCCCCcceEEeecCCCCCEEE
Confidence 5999999999999999999998876555689999999999754333333344433221 234678897 678999
Q ss_pred ecCCC
Q psy8270 572 GTTDL 576 (737)
Q Consensus 572 G~Tde 576 (737)
|++..
T Consensus 267 G~~a~ 271 (393)
T PRK11728 267 GPNAV 271 (393)
T ss_pred CCCcc
Confidence 97543
No 11
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.90 E-value=3.4e-22 Score=221.32 Aligned_cols=159 Identities=24% Similarity=0.255 Sum_probs=127.8
Q ss_pred cceeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeeccc
Q psy8270 415 SSYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELT 494 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~t 494 (737)
..+.++++++++++|.+....+.+.+.+..+.||+..++.+++..++++|+++++|++|++|+.+++| ++-+.+. +
T Consensus 118 ~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~---~ 193 (429)
T COG0579 118 DLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTS---N 193 (429)
T ss_pred ceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEec---C
Confidence 46789999999999999777667777788888999999999999999999999999999999998343 4444433 3
Q ss_pred CeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCCCCC---cEEEEeec-CCeEe
Q psy8270 495 GKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDG---RVIFFLPW-LKHTI 570 (737)
Q Consensus 495 g~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dg---r~iy~~P~-~g~~i 570 (737)
|+.. ++|+.||||+|.+|+.|+++.|.+......|.+|+++++++.........+++.+..+ ..++..|. +|.++
T Consensus 194 g~~~-~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l 272 (429)
T COG0579 194 GEET-LEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLL 272 (429)
T ss_pred CcEE-EEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEEEcccccccccceeecCCCCCCCCCcceeecccCCeEE
Confidence 5443 9999999999999999999999987777899999999999855555555555544332 44556665 68999
Q ss_pred eecCCCCC
Q psy8270 571 AGTTDLPC 578 (737)
Q Consensus 571 vG~Tde~~ 578 (737)
+|++....
T Consensus 273 ~GP~A~~~ 280 (429)
T COG0579 273 FGPNALDS 280 (429)
T ss_pred ECCCcccc
Confidence 99998655
No 12
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.90 E-value=1.4e-21 Score=218.29 Aligned_cols=176 Identities=14% Similarity=0.102 Sum_probs=115.5
Q ss_pred cceeeCHhhHHHHCCCCCcccceeEEE-ecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecc
Q psy8270 415 SSYYLSKKNALELFPMIRGDKLCGAIV-YYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDEL 493 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~~~~g~~~-~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~ 493 (737)
..++++++++++++|.++.+ +.+++. +.++++++..++.++++.+++.|++++++++|+++..+ ++.+ .+.+.+..
T Consensus 162 ~~~~l~~~e~~~~~P~l~~~-~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~ 238 (410)
T PRK12409 162 ERRAVTPEEMRAIEPTLTGE-YYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSA 238 (410)
T ss_pred CeEEcCHHHHHHhCCCCccc-cceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCC
Confidence 45789999999999998644 555554 45678899999999999999999999999999999876 4544 34433311
Q ss_pred cCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCC--CCceeeecCCCCCcEEEEeecCCeEee
Q psy8270 494 TGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSP--DQMGLLDPSTSDGRVIFFLPWLKHTIA 571 (737)
Q Consensus 494 tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~--~~~~i~~~~~~Dgr~iy~~P~~g~~iv 571 (737)
..+...+.|++||+|+|+|+..+.++++..++ +.|.+|++++++..... .....+.....+..+.+..+..+++++
T Consensus 239 ~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~~~--i~p~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i 316 (410)
T PRK12409 239 EHPSRTLEFDGVVVCAGVGSRALAAMLGDRVN--VYPVKGYSITVNLDDEASRAAAPWVSLLDDSAKIVTSRLGADRFRV 316 (410)
T ss_pred CCccceEecCEEEECCCcChHHHHHHhCCCCc--cccCCceEEEeecCCccccccCCceeeeecCCcEEEEecCCCcEEE
Confidence 10023589999999999999999988877666 88999998877532111 111111101122332221222456777
Q ss_pred ecCCCCCCCCCCCCCCHHHHHHHHHH
Q psy8270 572 GTTDLPCDVTHHPKPTEDEIMFILQE 597 (737)
Q Consensus 572 G~Tde~~~~~~d~~pteeeI~~Lls~ 597 (737)
|++.+... .+..++.+.++.+.+.
T Consensus 317 gg~~~~~~--~~~~~~~~~~~~l~~~ 340 (410)
T PRK12409 317 AGTAEFNG--YNRDIRADRIRPLVDW 340 (410)
T ss_pred EEEEEecC--CCCCCCHHHHHHHHHH
Confidence 77765422 2334455555555444
No 13
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.88 E-value=1.1e-21 Score=219.00 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=115.2
Q ss_pred cceeeCHhhHHHHCCCCCc--ccceeEEE-ecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEee
Q psy8270 415 SSYYLSKKNALELFPMIRG--DKLCGAIV-YYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRD 491 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~--~~~~g~~~-~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~ 491 (737)
..++++++++.+++|.+.. +.+.+++. +.++.+||..++.++++.++++|++|+++++|++++.+ ++++++|+..
T Consensus 163 ~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~- 240 (416)
T PRK00711 163 PYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTG- 240 (416)
T ss_pred CceecCHHHHHHhCCCccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeC-
Confidence 4578999999999998852 45556654 45678899999999999999999999999999999887 6666666532
Q ss_pred cccCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCCCCCcEEEEeec-CCeEe
Q psy8270 492 ELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPW-LKHTI 570 (737)
Q Consensus 492 ~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dgr~iy~~P~-~g~~i 570 (737)
.. ++.|++||+|+|+|+..+++.++.+.| +.|.||+.+.++............ .+....+.+++ +++++
T Consensus 241 ----~~-~~~a~~VV~a~G~~~~~l~~~~g~~~p--i~p~rg~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~ 310 (416)
T PRK00711 241 ----GG-VITADAYVVALGSYSTALLKPLGVDIP--VYPLKGYSLTVPITDEDRAPVSTV---LDETYKIAITRFDDRIR 310 (416)
T ss_pred ----Cc-EEeCCEEEECCCcchHHHHHHhCCCcc--cCCccceEEEEecCCCCCCCceeE---EecccCEEEeecCCceE
Confidence 12 589999999999999999988887766 889999887764321111111111 12221123343 56788
Q ss_pred eecCCCCCCCCCCCCCCHHHHHHHHH
Q psy8270 571 AGTTDLPCDVTHHPKPTEDEIMFILQ 596 (737)
Q Consensus 571 vG~Tde~~~~~~d~~pteeeI~~Lls 596 (737)
+|++.+... .+..++.+..+.+.+
T Consensus 311 iG~~~~~~~--~~~~~~~~~~~~l~~ 334 (416)
T PRK00711 311 VGGMAEIVG--FDLRLDPARRETLEM 334 (416)
T ss_pred EEEEEEecC--CCCCCCHHHHHHHHH
Confidence 887654322 233444444444433
No 14
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.88 E-value=6.5e-21 Score=212.66 Aligned_cols=170 Identities=14% Similarity=0.126 Sum_probs=117.6
Q ss_pred cceeeCHhhHHHHCCCCCcc-----cceeEE-EecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEE
Q psy8270 415 SSYYLSKKNALELFPMIRGD-----KLCGAI-VYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAH 488 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~-----~~~g~~-~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~ 488 (737)
..++++++++++++|.++.+ .+.|++ .+.+|.++|..++.++++.++++|++++++++|++++..+++++.+|+
T Consensus 142 ~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~ 221 (407)
T TIGR01373 142 DAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVE 221 (407)
T ss_pred CeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEE
Confidence 45789999999999998643 244554 455678899999999999999999999999999999764356777776
Q ss_pred EeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCCCCCcEEEEeec-CC
Q psy8270 489 LRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPW-LK 567 (737)
Q Consensus 489 ~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dgr~iy~~P~-~g 567 (737)
+.+ + .+.|++||+|||+|+..+.++++.++| +.+.+++.++++.... ....++. ..++ .+|+.|. +|
T Consensus 222 t~~-----g-~i~a~~vVvaagg~~~~l~~~~g~~~~--~~~~~~~~~~~~~~~~-~~~~~~~--~~~~-~~y~~p~~~g 289 (407)
T TIGR01373 222 TTR-----G-FIGAKKVGVAVAGHSSVVAAMAGFRLP--IESHPLQALVSEPLKP-IIDTVVM--SNAV-HFYVSQSDKG 289 (407)
T ss_pred eCC-----c-eEECCEEEECCChhhHHHHHHcCCCCC--cCcccceEEEecCCCC-CcCCeEE--eCCC-ceEEEEcCCc
Confidence 432 2 599999999999999999988888766 7788888777653221 1122232 1223 3567787 46
Q ss_pred eEeeecCCCCCCCCCCCCCCHHHHHHHHHH
Q psy8270 568 HTIAGTTDLPCDVTHHPKPTEDEIMFILQE 597 (737)
Q Consensus 568 ~~ivG~Tde~~~~~~d~~pteeeI~~Lls~ 597 (737)
++++|++.+... .....++.+..+.+++.
T Consensus 290 ~~~ig~~~~~~~-~~~~~~~~~~~~~l~~~ 318 (407)
T TIGR01373 290 ELVIGGGIDGYN-SYAQRGNLPTLEHVLAA 318 (407)
T ss_pred eEEEecCCCCCC-ccCcCCCHHHHHHHHHH
Confidence 788887653211 12223344444444444
No 15
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.86 E-value=3.9e-20 Score=203.20 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=90.8
Q ss_pred cceeeCHhhHHHHCCCCCcccceeEEEec-ceeEChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeec
Q psy8270 415 SSYYLSKKNALELFPMIRGDKLCGAIVYY-DGQQDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDE 492 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~~~~g~~~~~-~g~Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~ 492 (737)
..++++++++.+++|.++.+.+.+++.++ ++++||..++.+|++.+.+. |++++++++|++|.. + .|++.+
T Consensus 109 ~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~- 181 (365)
T TIGR03364 109 RVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSR- 181 (365)
T ss_pred CeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCC-
Confidence 45789999999999998656667776654 67899999999999988775 999999999999953 2 344322
Q ss_pred ccCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCC
Q psy8270 493 LTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGY 541 (737)
Q Consensus 493 ~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~ 541 (737)
+ .+.|++||+|||+|+..|++.++...+ +.|.||+++.+++.
T Consensus 182 --g---~i~a~~VV~A~G~~s~~l~~~~~~~~~--~~p~~~q~~~~~p~ 223 (365)
T TIGR03364 182 --G---DVHADQVFVCPGADFETLFPELFAASG--VRRCKLQMMRTAPQ 223 (365)
T ss_pred --C---cEEeCEEEECCCCChhhhCcchhhccC--cceEEEEeeeccCC
Confidence 2 478999999999999999877665555 88999999988653
No 16
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.86 E-value=1.9e-20 Score=211.24 Aligned_cols=205 Identities=36% Similarity=0.529 Sum_probs=171.7
Q ss_pred HhhhcCCCcCceeecccCccccccCCCCCCCccccccceeeeecC--CCeeEeeCCcchhhHhhHHHHHHHHHhhhcccc
Q psy8270 113 ALHERSIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSP--SNLVTIAGGKWTTYRAMASESIDALIEGKFNKA 190 (737)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (737)
.++...+++.||+++|+|||||+.+ +..+++++||+|.+..+. +|++|++||||||||+||+++++++++.+
T Consensus 314 ~~~~~~l~~~dI~~syaGVRPL~~~--~~~~~~~isR~~~l~~~~~~~glltv~GGKlTTyR~maE~a~d~v~~~l---- 387 (532)
T COG0578 314 RYLAPPLTREDILSTYAGVRPLVDD--GDDDTSAISRDHVLFDHAELAGLLTVAGGKLTTYRKMAEDALDAVCEKL---- 387 (532)
T ss_pred hhhhccCChhheeeeeeeeeeccCC--CCCchhhccCceEEEecCCCCCeEEEecchhHHhHHHHHHHHHHHHHhc----
Confidence 4567789999999999999999985 356899999999999999 99999999999999999999999998853
Q ss_pred CCCCcccccchhhceeeecCCccchhhhhhhhhHHHHHhhccccCCCCCCCccccccccCCCCCC--hhhHHHHhhh-cC
Q psy8270 191 GAEYPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKPKYRDCQTDGLLIEGAHGWT--PTMYIRLVQD-FG 267 (737)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~ 267 (737)
+.. ++|.|+.+.|+|++..+ .+....+... .+
T Consensus 388 --------------------------------------------g~~-~~~~t~~~~LpGg~~~~~~~~~~~~~~~~~~~ 422 (532)
T COG0578 388 --------------------------------------------GIR-PPCTTADLPLPGGDENAALAELAAALGAAYPG 422 (532)
T ss_pred --------------------------------------------CCC-CCcccCCCCCCCCCcchhhHHHHHHhccccCC
Confidence 334 89999999999998433 1234444444 69
Q ss_pred CchhHHHHHHHhhcccHHHHHHHHHhhCCCCCcccccCCCCCcchHHHHHHHHH-HhhhchhhHHHHHhhhhhhchHHHH
Q psy8270 268 LECETAQHLSNSYGDRAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLAFLNVQAAQ 346 (737)
Q Consensus 268 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~ 346 (737)
++...++++...||.++..++.++..+ +..+..+ ..+++.+|++|+++ ||+.++.|++.||+..+++.... .
T Consensus 423 l~~~~~r~l~~~YGs~~~~l~~~~~~~----~~~~~~~--~~~~~~ael~y~~~~E~a~~~~D~l~RRt~~~l~~~~~-~ 495 (532)
T COG0578 423 LPSALARHLARLYGSRAELLLALAAVL----ADLGEHA--LSDLYEAELRYLVRHEMALTLEDILARRTKLGLLLADV-L 495 (532)
T ss_pred CcHHHHHHHHHhhCcCHHHHHHHhhhc----ccccccc--CCcchHHHHHHHHHhhhcCCHHHHHHHHHHhhhccccc-h
Confidence 999999999999999999999998542 2233333 45678999999999 99999999999999999999888 7
Q ss_pred hhHHHHHHHHHHhhcccHHHHHHHHhhhh
Q psy8270 347 EALPMIIEIMAEELKWSKEEQEAAQKALP 375 (737)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (737)
...+..+..|+..++|+..+...+..++.
T Consensus 496 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 524 (532)
T COG0578 496 AAADAVAAVMAEELGWSAERPAAEGQALR 524 (532)
T ss_pred hhHHHHHHHHHHHcCCChhhhhHHHHHHH
Confidence 77888999999999999887666555543
No 17
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.85 E-value=6.3e-20 Score=209.27 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=111.7
Q ss_pred eeCHhhHHHHCCCCCcc-----cceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeec
Q psy8270 418 YLSKKNALELFPMIRGD-----KLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDE 492 (737)
Q Consensus 418 ~l~~~~~~~~~p~~~~~-----~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~ 492 (737)
.++++++.+.+|.+... ...+.+++.++.+||..++.++++.+++.|++++++++|+++..++++. +.|++.+.
T Consensus 141 ~l~~~el~~~eP~l~~~r~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~-v~v~~~~~ 219 (483)
T TIGR01320 141 SEDPATFAEWLPLMAAGRDFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGS-WTVTVKNT 219 (483)
T ss_pred eCCHHHHHHhCCCcccCCCCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCe-EEEEEeec
Confidence 37999999999998642 3445566677789999999999999999999999999999998862333 34544432
Q ss_pred ccCeeEEEEcCEEEecCCCChhhhhhhcCCCc--cccccccceEEEEecCC-CCCCCceeeecCCCCCcEEEEeecC---
Q psy8270 493 LTGKEWDLKAKSVINATGPFTDSIRRMDDGQV--QKICVPSSGVHIVLPGY-YSPDQMGLLDPSTSDGRVIFFLPWL--- 566 (737)
Q Consensus 493 ~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l--p~~i~p~KG~~lvv~~~-~~~~~~~i~~~~~~Dgr~iy~~P~~--- 566 (737)
.+++...+.|+.||+|||+|+..|++++|... ...+.|.+|+++.++.+ ........+++.+.-+.-.+.+|..
T Consensus 220 ~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr 299 (483)
T TIGR01320 220 RTGGKRTLNTRFVFVGAGGGALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTR 299 (483)
T ss_pred cCCceEEEECCEEEECCCcchHHHHHHcCCCcCCCCceeeeeEEEEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCc
Confidence 23433469999999999999999999998862 34579999999998754 2222333334333222213455432
Q ss_pred ---C-e-EeeecCCC
Q psy8270 567 ---K-H-TIAGTTDL 576 (737)
Q Consensus 567 ---g-~-~ivG~Tde 576 (737)
| . +++|++..
T Consensus 300 ~i~G~~~~~~GP~A~ 314 (483)
T TIGR01320 300 VVDGKKWLLFGPYAG 314 (483)
T ss_pred cccCCEEEEECcCCC
Confidence 2 2 34888887
No 18
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.85 E-value=2.1e-20 Score=219.29 Aligned_cols=212 Identities=44% Similarity=0.798 Sum_probs=181.9
Q ss_pred cCCCcCceeecccCccccccCCCCCCCccccccceeeeecCCCeeEeeCCcchhhHhhHHHHHHHHHhhhccccCCCCcc
Q psy8270 117 RSIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSPSNLVTIAGGKWTTYRAMASESIDALIEGKFNKAGAEYPN 196 (737)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (737)
..++..+|.+.|+|+||++.++. ...+..++|+|.|..+.+|+++++||||||||.||++++|++++.
T Consensus 387 ~~l~~~~v~~~waG~RPl~~d~~-~~~~~~~sr~~~i~~~~~gli~i~GGk~Tt~R~mAe~~~d~~~~~----------- 454 (627)
T PLN02464 387 VKVRRSDVLSAWSGIRPLAVDPS-AKSTESISRDHVVCEEPDGLVTITGGKWTTYRSMAEDAVDAAIKS----------- 454 (627)
T ss_pred CCCChhhEEEEEEeEEeeccCCC-CCcccccCCceEEEecCCCeEEEECChHHHHHHHHHHHHHHHHHh-----------
Confidence 35788899999999999997643 456789999999999999999999999999999999999998763
Q ss_pred cccchhhceeeecCCccchhhhhhhhhHHHHHhhccccCCCCCCCccccccccCCCCCChhhHHHHhhhc----------
Q psy8270 197 LLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKPKYRDCQTDGLLIEGAHGWTPTMYIRLVQDF---------- 266 (737)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 266 (737)
..++ ..+.|.|..+.+.|++.|+.++..++.+.+
T Consensus 455 -----------------------------------~~l~-~~~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (627)
T PLN02464 455 -----------------------------------GKLS-PTNGCVTTDLPLVGAEGYEPSLFTQLAQQYVRMKRTYGGK 498 (627)
T ss_pred -----------------------------------cccC-CCCCCCcCCcccCCCCccchhhHHHHHHHhhhhhhhcccc
Confidence 1122 245799999999999999988777777776
Q ss_pred ----CCchhHHHHHHHhhcccHHHHHHHHHhhCCCCCcccccCCCCCcchHHHHHHHHH-HhhhchhhHHHHHhhhhhhc
Q psy8270 267 ----GLECETAQHLSNSYGDRAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLAFLN 341 (737)
Q Consensus 267 ----~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 341 (737)
+++.+.+++|..+||.++..++.++++ +.+++.++++.+++.+|+.|+++ |+..++.|++.||+++.+..
T Consensus 499 ~~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~-----~~~~~~~~~~~~~~~aEv~~ai~~e~a~~~~D~l~RRtrl~~~~ 573 (627)
T PLN02464 499 VVPGAMDTAAAKHLAHAYGGRADRVAEIAQN-----EGLGKRLAHGYPFLEAEVAYCARHEYCESAVDFIARRTRLAFLD 573 (627)
T ss_pred ccccCCCHHHHHHHHHhhchHHHHHHhhccc-----cccccccccCCCcHHHHHHHHHHccCcCCHHHHHHHhccCcccC
Confidence 589999999999999999999988744 34888999999999999999999 99999999999999999997
Q ss_pred hHHHHhhHHHHHHHHHHhhcccHHHHHHHHhhhhHHHHHH
Q psy8270 342 VQAAQEALPMIIEIMAEELKWSKEEQEAAQKALPMIIEIM 381 (737)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (737)
.......+++++++|+++++|+.++...+++.+...+..+
T Consensus 574 ~~~~~~~~~~v~~i~a~~l~w~~~~~~~e~~~~~~~~~~~ 613 (627)
T PLN02464 574 TDAAVRALPRVVEILAAEHGWDKSRKKQELQKAKEFLETF 613 (627)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 7777777999999999999999988888777765544444
No 19
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.84 E-value=1.4e-19 Score=205.66 Aligned_cols=110 Identities=12% Similarity=-0.001 Sum_probs=83.6
Q ss_pred ceeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccC
Q psy8270 416 SYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTG 495 (737)
Q Consensus 416 ~~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg 495 (737)
.++|+++++.+.+|.. ....|.+.+.+|.+||.+++.+|++.+++.|++|+++++|+++... + .+.|++ .
T Consensus 151 ~~~l~~~e~~~~~~~~--~~~~g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~-~~~v~t-----~ 220 (460)
T TIGR03329 151 WQRLSEGELARRTGSA--RHLEGFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG--Q-PAVVRT-----P 220 (460)
T ss_pred eEEcCHHHHHHHhCCC--cceEEEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC--C-ceEEEe-----C
Confidence 4789999999999842 2234456667789999999999999999999999999999999743 2 234542 2
Q ss_pred eeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecC
Q psy8270 496 KEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPG 540 (737)
Q Consensus 496 ~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~ 540 (737)
.+ .+.|++||+|||+|+..+.+.++.. +.|.+++++++++
T Consensus 221 ~g-~v~A~~VV~Atga~s~~l~~~~~~~----~~p~~~~~~~t~p 260 (460)
T TIGR03329 221 DG-QVTADKVVLALNAWMASHFPQFERS----IAIVSSDMVITEP 260 (460)
T ss_pred Cc-EEECCEEEEcccccccccChhhcCe----EEEeccceEecCC
Confidence 22 5899999999999999887765543 4456677666543
No 20
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.84 E-value=1.9e-19 Score=205.28 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=111.0
Q ss_pred cceeeCHhhHHHHCCCCC--------cccceeEEEecc-eeEChHHHHHHHHHHHHH----CC--cEEecCceEEEEEEc
Q psy8270 415 SSYYLSKKNALELFPMIR--------GDKLCGAIVYYD-GQQDDARMCLAIALTATR----HG--ATVANHVRVTNLIKD 479 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~--------~~~~~g~~~~~~-g~Vdp~~~v~al~~~A~~----~G--ve~~~nt~V~~L~~d 479 (737)
..++++++++++.+|.+. .+.+.+.+.+.+ +.+|+..++.++++.+++ .| ++++++++|++|..+
T Consensus 167 ~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~ 246 (497)
T PTZ00383 167 SMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS 246 (497)
T ss_pred CeEEECHHHHHHhCcccccCccccccccceEEEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec
Confidence 468899999999999884 233444444545 478999999999999999 88 789999999999987
Q ss_pred CCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCCCCCcE
Q psy8270 480 DKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRV 559 (737)
Q Consensus 480 ~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dgr~ 559 (737)
++.++.|++. ++ .+.|+.||+|||+|+..|++++|......+.|.+|+++..++. ....+ ++.+.. ..
T Consensus 247 -~~~~~~V~T~-----~G-~i~A~~VVvaAG~~S~~La~~~Gi~~~~~i~Pv~G~~~~~~~~---~~~kV-Y~v~~p-~~ 314 (497)
T PTZ00383 247 -NDSLYKIHTN-----RG-EIRARFVVVSACGYSLLFAQKMGYGLEYSCLPVAGSFYFSGNI---LNGKV-YTVQNP-AL 314 (497)
T ss_pred -CCCeEEEEEC-----CC-EEEeCEEEECcChhHHHHHHHhCCCCCCCEEecCceEEEcChh---hcCce-ecCCCC-CC
Confidence 5666667632 22 5999999999999999999999986666799999999887631 11112 111111 11
Q ss_pred ----EEEeec---CCeEeeecCCCCCCC
Q psy8270 560 ----IFFLPW---LKHTIAGTTDLPCDV 580 (737)
Q Consensus 560 ----iy~~P~---~g~~ivG~Tde~~~~ 580 (737)
++..|+ ++.+++|++..+...
T Consensus 315 Pf~~vH~d~~i~~~g~~~~GP~A~~~~~ 342 (497)
T PTZ00383 315 PFAAVHGDPDIIAKGKTRFGPTALPLPL 342 (497)
T ss_pred CCcCccCCCccCCCCeEEEccCcccchH
Confidence 112222 567889999876543
No 21
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.84 E-value=6e-19 Score=194.21 Aligned_cols=150 Identities=16% Similarity=0.100 Sum_probs=108.6
Q ss_pred cceeeCHhhHHHHCCCCCccc-ceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecc
Q psy8270 415 SSYYLSKKNALELFPMIRGDK-LCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDEL 493 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~~-~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~ 493 (737)
..++++++++.+++|.++.+. ..+.+.+.+|+++|.+++.++++.+.+.|++++++++|+++..+ ++. +.|+..+
T Consensus 113 ~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~-- 188 (376)
T PRK11259 113 PHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTAD-- 188 (376)
T ss_pred CcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCC--
Confidence 357799999999999996443 44556666789999999999999999999999999999999886 443 3344321
Q ss_pred cCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCC---CCCceeeecCCCCCcEEEEeec-CCe-
Q psy8270 494 TGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYS---PDQMGLLDPSTSDGRVIFFLPW-LKH- 568 (737)
Q Consensus 494 tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~---~~~~~i~~~~~~Dgr~iy~~P~-~g~- 568 (737)
+ .+.|++||+|+|+|+..++.++ ..| +.|.|++++.++.... ......+.....+++.+|.+|. +++
T Consensus 189 -g---~~~a~~vV~A~G~~~~~l~~~~--~~~--i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~ 260 (376)
T PRK11259 189 -G---TYEAKKLVVSAGAWVKDLLPPL--ELP--LTPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPG 260 (376)
T ss_pred -C---EEEeeEEEEecCcchhhhcccc--cCC--ceEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCc
Confidence 2 5899999999999999987763 334 7788999998864311 1111222212335565788887 455
Q ss_pred EeeecCCC
Q psy8270 569 TIAGTTDL 576 (737)
Q Consensus 569 ~ivG~Tde 576 (737)
+++|++..
T Consensus 261 l~ig~~~~ 268 (376)
T PRK11259 261 LKIGKHNG 268 (376)
T ss_pred eEEEECCC
Confidence 78887664
No 22
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.83 E-value=2.9e-19 Score=203.36 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=96.4
Q ss_pred cceee-CHhhHHHHCCCCCcc----c-ceeEEEecceeEChHHHHHHHHHHHHH-CCcEEecCceEEEEEEcCCCcEEEE
Q psy8270 415 SSYYL-SKKNALELFPMIRGD----K-LCGAIVYYDGQQDDARMCLAIALTATR-HGATVANHVRVTNLIKDDKGKVRGA 487 (737)
Q Consensus 415 ~~~~l-~~~~~~~~~p~~~~~----~-~~g~~~~~~g~Vdp~~~v~al~~~A~~-~Gve~~~nt~V~~L~~d~~~~V~gV 487 (737)
..+++ +++++.+++|.+..+ . +.+.+++.++.+|+..++.++++.+.+ .|++++++++|+++..++++. +.|
T Consensus 143 ~~~~~~d~~el~~~~P~l~~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v 221 (497)
T PRK13339 143 NIEYTEDIEVMAKWMPLMMPGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEV 221 (497)
T ss_pred CcEEecCHHHHHHhCCcccCCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEE
Confidence 56788 799999999999653 3 444455566689999999999999865 499999999999998762333 445
Q ss_pred EEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc--cccccccceEEEEecC
Q psy8270 488 HLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV--QKICVPSSGVHIVLPG 540 (737)
Q Consensus 488 ~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l--p~~i~p~KG~~lvv~~ 540 (737)
++.+..+++...+.|+.||+|||+|+..|++++|.+. ...+.|.||+++.++.
T Consensus 222 ~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~~~~~~i~PvkGq~l~l~~ 276 (497)
T PRK13339 222 TVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPESKHLGGFPISGQFLRCTN 276 (497)
T ss_pred EEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCceEeeeEEEEEecC
Confidence 4432213322258999999999999999999998863 2358999999999976
No 23
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.82 E-value=2e-18 Score=190.26 Aligned_cols=115 Identities=19% Similarity=0.142 Sum_probs=92.8
Q ss_pred cceeeCHhhHHHHCCCCCcccce-eEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecc
Q psy8270 415 SSYYLSKKNALELFPMIRGDKLC-GAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDEL 493 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~~~~-g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~ 493 (737)
..++++++++.+++|.++.+... +.+.+.+|.++|..++.++...++++|++++.+++|+++..+ ++++ .|++.
T Consensus 109 ~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~--- 183 (380)
T TIGR01377 109 EHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTT--- 183 (380)
T ss_pred CeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeC---
Confidence 35689999999999998644444 445566788999999999999999999999999999999876 4543 35432
Q ss_pred cCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEec
Q psy8270 494 TGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLP 539 (737)
Q Consensus 494 tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~ 539 (737)
+ + .+.|+.||+|+|+|+..++++++..+| +.|.+++...+.
T Consensus 184 -~-~-~i~a~~vV~aaG~~~~~l~~~~g~~~~--~~~~~~~~~~~~ 224 (380)
T TIGR01377 184 -K-G-SYQANKLVVTAGAWTSKLLSPLGIEIP--LQPLRINVCYWR 224 (380)
T ss_pred -C-C-EEEeCEEEEecCcchHHHhhhcccCCC--ceEEEEEEEEEe
Confidence 1 2 589999999999999999999887777 778888876664
No 24
>KOG2844|consensus
Probab=99.81 E-value=8.4e-19 Score=196.33 Aligned_cols=150 Identities=25% Similarity=0.330 Sum_probs=121.8
Q ss_pred cceeeCHhhHHHHCCCCCcccceeEE-EecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecc
Q psy8270 415 SSYYLSKKNALELFPMIRGDKLCGAI-VYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDEL 493 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~~~~g~~-~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~ 493 (737)
..+.|++++.++++|.++.+++.|++ .+.||.+||..+|++|+..|++.|+.|+++|+|++|... .++.+||....
T Consensus 151 e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~-- 227 (856)
T KOG2844|consen 151 ESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPH-- 227 (856)
T ss_pred eeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccC--
Confidence 56889999999999999999988885 577889999999999999999999999999999999988 67777887432
Q ss_pred cCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCC--CceeeecCCCCCcEEEEeecCCeEee
Q psy8270 494 TGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPD--QMGLLDPSTSDGRVIFFLPWLKHTIA 571 (737)
Q Consensus 494 tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~--~~~i~~~~~~Dgr~iy~~P~~g~~iv 571 (737)
..|+|..||||||.|+.++-.+.++++| +.|.+-.+++++.-.... ....+ ...|+++ |+.-+.+.++.
T Consensus 228 ----G~iet~~~VNaaGvWAr~Vg~m~gvkvP--L~p~~H~YvvT~~IeGi~s~t~p~i--rD~DgSv-ylR~~~~gil~ 298 (856)
T KOG2844|consen 228 ----GSIETECVVNAAGVWAREVGAMAGVKVP--LVPMHHAYVVTSRIEGVSSLTRPNI--RDLDGSV-YLRQQGDGILF 298 (856)
T ss_pred ----cceecceEEechhHHHHHhhhhcCCccc--ceeeeeeEEEecccCCccCCCccce--ecccceE-EEEecCCceec
Confidence 2699999999999999999999999988 889998888886533221 11223 2456764 57677777777
Q ss_pred ecCCC
Q psy8270 572 GTTDL 576 (737)
Q Consensus 572 G~Tde 576 (737)
|+-..
T Consensus 299 GGyE~ 303 (856)
T KOG2844|consen 299 GGYES 303 (856)
T ss_pred ccccc
Confidence 76554
No 25
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.79 E-value=5.5e-18 Score=193.74 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=96.5
Q ss_pred cee-eCHhhHHHHCCCCCc-----ccceeEEEecceeEChHHHHHHHHHHHHHCC-cEEecCceEEEEEEcCCCcEEEEE
Q psy8270 416 SYY-LSKKNALELFPMIRG-----DKLCGAIVYYDGQQDDARMCLAIALTATRHG-ATVANHVRVTNLIKDDKGKVRGAH 488 (737)
Q Consensus 416 ~~~-l~~~~~~~~~p~~~~-----~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~G-ve~~~nt~V~~L~~d~~~~V~gV~ 488 (737)
.++ ++++++++.+|.+.. +...+.+++.++.+|+..++.+|++.+++.| ++++++++|+++..++++. +.|+
T Consensus 143 ~~~~~d~~el~e~eP~l~~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~-~~v~ 221 (494)
T PRK05257 143 MEFSEDPAQIKEWAPLMMEGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGS-WTVT 221 (494)
T ss_pred CEEeCCHHHHHHhCcccccCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCC-EEEE
Confidence 345 499999999999842 2344455666678999999999999999987 7999999999999863444 3455
Q ss_pred EeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc--cccccccceEEEEecCC
Q psy8270 489 LRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV--QKICVPSSGVHIVLPGY 541 (737)
Q Consensus 489 ~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l--p~~i~p~KG~~lvv~~~ 541 (737)
+.+..+++..++.|+.||+|||+|+..+++++|.+. ...+.|.+|++++++.+
T Consensus 222 ~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~PvrGq~l~~~~~ 276 (494)
T PRK05257 222 VKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPEAKGYGGFPVSGQFLVCENP 276 (494)
T ss_pred EEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCCeeeeeEEEEEcCCH
Confidence 433223433369999999999999999999998863 23488999999999764
No 26
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.78 E-value=6.9e-18 Score=200.00 Aligned_cols=159 Identities=16% Similarity=0.042 Sum_probs=109.2
Q ss_pred eeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCe
Q psy8270 417 YYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGK 496 (737)
Q Consensus 417 ~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~ 496 (737)
++++++++.+.+|.. ....|.+.+.+|+++|..++.+++..+.+ |++++++++|+++..+ ++++. |++. .
T Consensus 377 ~~l~~~e~~~~~~~~--~~~~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~-----~ 446 (662)
T PRK01747 377 RALDAEEAEELAGLP--VPCGGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFA-----G 446 (662)
T ss_pred hhCCHHHHHHHhCCC--CCCCcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEEC-----C
Confidence 457888888887732 22344455566789999999999999998 9999999999999886 55543 5432 2
Q ss_pred eEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCC-CCceeeecCCCCCcEEEEee-c-CCeEeeec
Q psy8270 497 EWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSP-DQMGLLDPSTSDGRVIFFLP-W-LKHTIAGT 573 (737)
Q Consensus 497 ~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~-~~~~i~~~~~~Dgr~iy~~P-~-~g~~ivG~ 573 (737)
+..+.|+.||+|+|+|+..+.+.. .+| +.|.||+++.++..... ....++. .+ .|++| . +|..++|+
T Consensus 447 g~~~~ad~VV~A~G~~s~~l~~~~--~lp--l~p~RGqv~~~~~~~~~~~~~~~~~----~~--~Y~~p~~~~g~~~iGa 516 (662)
T PRK01747 447 GTLASAPVVVLANGHDAARFAQTA--HLP--LYSVRGQVSHLPTTPALSALKQVLC----YD--GYLTPQPANGTHCIGA 516 (662)
T ss_pred CcEEECCEEEECCCCCcccccccc--CCC--cccccceEEeecCCccccccCceeE----CC--ceeCCCCCCCceEeCc
Confidence 224689999999999999887643 344 88999999988653211 1111221 12 26778 4 56788898
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH
Q psy8270 574 TDLPCDVTHHPKPTEDEIMFILQE 597 (737)
Q Consensus 574 Tde~~~~~~d~~pteeeI~~Lls~ 597 (737)
+.+... .+..++.+....+++.
T Consensus 517 t~~~~~--~~~~~~~~~~~~~~~~ 538 (662)
T PRK01747 517 SYDRDD--TDTAFREADHQENLER 538 (662)
T ss_pred ccCCCC--CCCCCCHHHHHHHHHH
Confidence 876543 3445566666666555
No 27
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.78 E-value=2.9e-17 Score=181.19 Aligned_cols=151 Identities=22% Similarity=0.251 Sum_probs=112.0
Q ss_pred eeeCHhhHHHHCCCCCcccceeEEEe-cceeEChHHHHHHHHHHHHHCCc-EEecCceEEEEEEcCCCcEEEEEEeeccc
Q psy8270 417 YYLSKKNALELFPMIRGDKLCGAIVY-YDGQQDDARMCLAIALTATRHGA-TVANHVRVTNLIKDDKGKVRGAHLRDELT 494 (737)
Q Consensus 417 ~~l~~~~~~~~~p~~~~~~~~g~~~~-~~g~Vdp~~~v~al~~~A~~~Gv-e~~~nt~V~~L~~d~~~~V~gV~~~~~~t 494 (737)
+.++..++.+..|.+..+...+++.. .++.++|..++.+++..++++|+ .+..+++|..+..+ + ++++|...+
T Consensus 122 ~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~--- 196 (387)
T COG0665 122 ELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG--- 196 (387)
T ss_pred eeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC---
Confidence 56889999999999987766777655 55678999999999999999995 66669999999876 4 667776432
Q ss_pred CeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCce---eeecCCCCCcEEEEeec-CCeEe
Q psy8270 495 GKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMG---LLDPSTSDGRVIFFLPW-LKHTI 570 (737)
Q Consensus 495 g~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~---i~~~~~~Dgr~iy~~P~-~g~~i 570 (737)
+ .+.|++||+|||+|+..+...++ .++..+.|.+++++.++......... ... ...+.. .|+.|. ++.++
T Consensus 197 --g-~i~a~~vv~a~G~~~~~l~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~y~~~~~~g~~~ 270 (387)
T COG0665 197 --G-TIEADKVVLAAGAWAGELAATLG-ELPLPLRPVRGQALTTEPPEGLLADGLAPVVL-VVDDGG-GYIRPRGDGRLR 270 (387)
T ss_pred --c-cEEeCEEEEcCchHHHHHHHhcC-CCcCccccccceEEEecCCCccccccccceEE-EecCCc-eEEEEcCCCcEE
Confidence 3 49999999999999999999988 33334899999999997643221111 111 112222 356665 67888
Q ss_pred eecCCCCC
Q psy8270 571 AGTTDLPC 578 (737)
Q Consensus 571 vG~Tde~~ 578 (737)
+|++.+..
T Consensus 271 ~g~~~~~~ 278 (387)
T COG0665 271 VGGTDEEG 278 (387)
T ss_pred Eeeccccc
Confidence 89887665
No 28
>KOG2853|consensus
Probab=99.78 E-value=1.3e-17 Score=174.76 Aligned_cols=154 Identities=19% Similarity=0.181 Sum_probs=112.8
Q ss_pred cceeeCHhhHHHHCCCCCcccceeEE--EecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEc---------CCC-
Q psy8270 415 SSYYLSKKNALELFPMIRGDKLCGAI--VYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKD---------DKG- 482 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~~~~g~~--~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d---------~~~- 482 (737)
..+.|+++++..+||+++.+.+.-+- .-.+|++||..+...+.+.+...|+.+. +.+|++++.+ |++
T Consensus 206 k~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t 284 (509)
T KOG2853|consen 206 KVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWALLSGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGT 284 (509)
T ss_pred hhcccCHHHHhhhCCcccccceeeeecccccccccCHHHHHHHHHHHhhhhcceEe-cceEEEEEEecccceeeecccch
Confidence 45789999999999999988665442 3457899999999999999999999997 6678887654 345
Q ss_pred ------cEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCC-------CccccccccceEEEEecCCCCC-CCce
Q psy8270 483 ------KVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDG-------QVQKICVPSSGVHIVLPGYYSP-DQMG 548 (737)
Q Consensus 483 ------~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~-------~lp~~i~p~KG~~lvv~~~~~~-~~~~ 548 (737)
++.+|.++- .++....+++..+|||+|+|+.+++++.|+ .+|.++.|+|.++.++..+..+ ...+
T Consensus 285 ~~~~~~~i~~vvV~m-~d~~~r~vk~al~V~aAGa~s~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~PGl~~P 363 (509)
T KOG2853|consen 285 AKLRAQRISGVVVRM-NDALARPVKFALCVNAAGAWSGQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDVPGLDTP 363 (509)
T ss_pred hhhhhcccceeEEec-CchhcCceeEEEEEeccCccHHHHHHHhccCCCCceeeecccCCccceeEEEEeCCCCCCCCCc
Confidence 566666552 233345799999999999999999998776 3455699999999988765433 2333
Q ss_pred eeecCCCCCcEEEEeec--CCeEeeecC
Q psy8270 549 LLDPSTSDGRVIFFLPW--LKHTIAGTT 574 (737)
Q Consensus 549 i~~~~~~Dgr~iy~~P~--~g~~ivG~T 574 (737)
+. .|...+|+.-. +++.++|-+
T Consensus 364 l~----iDpsG~f~Rrdglg~nfl~grs 387 (509)
T KOG2853|consen 364 LT----IDPSGVFFRRDGLGGNFLCGRS 387 (509)
T ss_pred ee----ECCCccEEEecCCCCceecccC
Confidence 33 23333455544 357777755
No 29
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.74 E-value=1.5e-16 Score=171.82 Aligned_cols=164 Identities=20% Similarity=0.273 Sum_probs=119.1
Q ss_pred cceeeCHhhHHHHCCCCCcccceeEEEe-cceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecc
Q psy8270 415 SSYYLSKKNALELFPMIRGDKLCGAIVY-YDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDEL 493 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~~~~g~~~~-~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~ 493 (737)
..++++++++.+.+|.++.+ ..+++.. .+|.+||..++.++++.++++|++++++++|+++..+ ++++.+|.+
T Consensus 102 ~~~~l~~~e~~~~~p~l~~~-~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~---- 175 (337)
T TIGR02352 102 EVEWLSGRALRRLEPYLSGG-IRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVT---- 175 (337)
T ss_pred ceEEcCHHHHHHhCCCCCcc-cceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEc----
Confidence 46889999999999998654 5566555 5789999999999999999999999999999999987 677777763
Q ss_pred cCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCC-CceeeecCCCCCcEEEEeec-CCeEee
Q psy8270 494 TGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPD-QMGLLDPSTSDGRVIFFLPW-LKHTIA 571 (737)
Q Consensus 494 tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~-~~~i~~~~~~Dgr~iy~~P~-~g~~iv 571 (737)
..+ .+.|++||+|+|+|+..|.+ .+ +.|.+|+++.++.+.... ...+... ..+. .+|+.|. ++++++
T Consensus 176 -~~g-~~~a~~vV~a~G~~~~~l~~-----~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~-~~y~~p~~~g~~~i 244 (337)
T TIGR02352 176 -PSG-DVQADQVVLAAGAWAGELLP-----LP--LRPVRGQPLRLEAPAVPLLNRPLRAV-VYGR-RVYIVPRRDGRLVV 244 (337)
T ss_pred -CCC-EEECCEEEEcCChhhhhccc-----CC--ccccCceEEEeeccccccCCcccceE-EEcC-CEEEEEcCCCeEEE
Confidence 223 68999999999999999865 33 789999999986542111 1111000 0122 2467786 466889
Q ss_pred ecCCCCCCCCCCCCCCHHHHHHHHHH
Q psy8270 572 GTTDLPCDVTHHPKPTEDEIMFILQE 597 (737)
Q Consensus 572 G~Tde~~~~~~d~~pteeeI~~Lls~ 597 (737)
|++..... .+..++.+.++.+.+.
T Consensus 245 G~~~~~~~--~~~~~~~~~~~~l~~~ 268 (337)
T TIGR02352 245 GATMEESG--FDTTPTLGGIKELLRD 268 (337)
T ss_pred EEeccccC--ccCCCCHHHHHHHHHH
Confidence 98876543 3445566666666554
No 30
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.73 E-value=4.7e-17 Score=187.14 Aligned_cols=169 Identities=28% Similarity=0.385 Sum_probs=138.3
Q ss_pred CCCcCceeecccCccccccCCCCCCCccccccceeeeec----CCCeeEeeCCcchhhHhhHHHHHHHHHhhhccccCCC
Q psy8270 118 SIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVS----PSNLVTIAGGKWTTYRAMASESIDALIEGKFNKAGAE 193 (737)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (737)
.++..+|...|+|+||++.++ ..++.+++|+|.|..+ .+|+++++||||||||.||+++++++++.+
T Consensus 309 ~l~~~~ii~~waG~RPl~~d~--~~~~~~~sr~~~i~~~~~~g~~gli~v~Ggk~Tt~r~mAe~~~~~~~~~l------- 379 (508)
T PRK12266 309 QLTPADVVWTYSGVRPLCDDE--SDSAQAITRDYTLELDDENGGAPLLSVFGGKITTYRKLAEHALEKLAPYL------- 379 (508)
T ss_pred CCCHHHEEEEeeeeEeeCCCC--CCCcccCCcceEEEecccCCCCCeEEEEcChHHHHHHHHHHHHHHHHHhc-------
Confidence 578889999999999999764 4568999999999987 478999999999999999999999887642
Q ss_pred CcccccchhhceeeecCCccchhhhhhhhhHHHHHhhccccCCCCCCCccccccccCCCCCChh---hHHHHhhhcC-Cc
Q psy8270 194 YPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKPKYRDCQTDGLLIEGAHGWTPT---MYIRLVQDFG-LE 269 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~ 269 (737)
+ ..+.|.|..+.+.|++.++.+ +...+.+.++ ++
T Consensus 380 -----------------------------------------~-~~~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 417 (508)
T PRK12266 380 -----------------------------------------P-QMGPAWTAGAPLPGGDFPGDRFDALAAALRRRYPWLP 417 (508)
T ss_pred -----------------------------------------C-CCCCCCcCCcccCCCCCCcccHHHHHHHHHHhcCCcC
Confidence 3 456799999999999854322 4445666666 99
Q ss_pred hhHHHHHHHhhcccHHHHHHHHHhhCCCCCcccccCCCCCcchHHHHHHHHH-HhhhchhhHHHHHhhhhhhchH
Q psy8270 270 CETAQHLSNSYGDRAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLAFLNVQ 343 (737)
Q Consensus 270 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~ 343 (737)
.+.+++|..+||.++..++++++. .+.+...+++ +++.+|+.|+++ ||++++.|++.||++++++...
T Consensus 418 ~~~~~~l~~~yG~~a~~v~~~~~~----~~~~~~~~~~--~~~~aev~~~~~~e~a~~~~D~l~RRt~l~~~~~~ 486 (508)
T PRK12266 418 EALARRLARAYGTRAERLLGGATS----LADLGEHFGH--GLYEAEVDYLVEHEWARTAEDILWRRTKLGLRLDA 486 (508)
T ss_pred HHHHHHHHHhhhhHHHHHHHhccc----chhhccccCC--CccHHHHHHHHHhhCCCCHHHHHHHhcccccccCH
Confidence 999999999999999999998753 2334444433 678999999999 9999999999999999997443
No 31
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.69 E-value=2.6e-16 Score=180.85 Aligned_cols=167 Identities=30% Similarity=0.421 Sum_probs=134.9
Q ss_pred CCCcCceeecccCccccccCCCCCCCccccccceeeeecC----CCeeEeeCCcchhhHhhHHHHHHHHHhhhccccCCC
Q psy8270 118 SIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSP----SNLVTIAGGKWTTYRAMASESIDALIEGKFNKAGAE 193 (737)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (737)
.++..+|...|+|+||++.++ .+++.++||+|.|..+. +|+|+++||||||||.||+++++++++.+
T Consensus 308 ~l~~~~i~~~waGlRPl~~d~--~~~~~~~sR~~~i~~~~~~g~~gli~i~Ggk~Tt~r~~Ae~v~d~~~~~l------- 378 (502)
T PRK13369 308 KLRREDVVHSFSGVRPLFDDG--AGNPSAVTRDYVFDLDAETGGAPLLSVFGGKITTFRKLAEHALERLKPFF------- 378 (502)
T ss_pred CCCHhHEEEEeeceEEcCCCC--CCCcccCCcceEEeeccccCCCCeEEEeCChHhhHHHHHHHHHHHHHHhc-------
Confidence 577889999999999999654 45688999999998874 68999999999999999999999887642
Q ss_pred CcccccchhhceeeecCCccchhhhhhhhhHHHHHhhccccCCCCCCCccccccccCCCCCCh---hhHHHHhhhc-CCc
Q psy8270 194 YPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKPKYRDCQTDGLLIEGAHGWTP---TMYIRLVQDF-GLE 269 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~ 269 (737)
+ ..+.|.|..+.+.|++..+. .+...+.+.+ .++
T Consensus 379 -----------------------------------------~-~~~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 416 (502)
T PRK13369 379 -----------------------------------------P-QMGGDWTAGAPLPGGDIANADFDTFADDLRDRYPWLP 416 (502)
T ss_pred -----------------------------------------C-CCCCCCCCCcccCCcCCCccCHHHHHHHHHhhcCCCC
Confidence 2 35679999999999974322 2333344445 499
Q ss_pred hhHHHHHHHhhcccHHHHHHHHHhhCCCCCcccccCCCCCcchHHHHHHHHH-HhhhchhhHHHHHhhhhhhc
Q psy8270 270 CETAQHLSNSYGDRAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLAFLN 341 (737)
Q Consensus 270 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 341 (737)
.+.+++|..+||.++..+++++.. .+.+...+++ +++.+|+.|+++ |+++++.|++.||+++++..
T Consensus 417 ~~~~~~l~~~yG~~a~~v~~~~~~----~~~~~~~~~~--~~~~aev~~~~~~e~a~~~~D~l~RRt~l~~~~ 483 (502)
T PRK13369 417 RPLAHRYARLYGTRAKDVLGGARS----LEDLGRHFGG--GLTEAEVRYLVAREWARTAEDILWRRTKLGLHL 483 (502)
T ss_pred HHHHHHHHHhhhhHHHHHHHhccc----chhhhcccCC--CccHHHHHHHHHhhcCCCHHHHHHHhhhccccc
Confidence 999999999999999999988753 2334444433 788999999999 99999999999999999974
No 32
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.67 E-value=1.1e-15 Score=176.27 Aligned_cols=198 Identities=23% Similarity=0.255 Sum_probs=165.1
Q ss_pred CCCcCceeecccCccccccCCCCCCCccccccceeeeec-----CCCeeEeeCCcchhhHhhHHHHHHHHHhhhccccCC
Q psy8270 118 SIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVS-----PSNLVTIAGGKWTTYRAMASESIDALIEGKFNKAGA 192 (737)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (737)
.+...+|...|+|+||++.+++ ..+..++||+|.|..+ .+|+++++|||||+||.||+++++++++.+
T Consensus 276 ~l~~~~i~~~~aGvRPl~~~~~-~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGkltt~r~~Ae~~~d~~~~~l------ 348 (516)
T TIGR03377 276 MLAQTRILRAFAGVRPLVAVDD-DPSGRNISRGIVLLDHAERDGLPGFITITGGKLTTYRLMAEWATDVVCKKL------ 348 (516)
T ss_pred ccccCCEEEEEeecccccCCCC-CCCccccCCCeEEeecccccCCCCeEEEecchHHHHHHHHHHHHHHHHHHc------
Confidence 4677899999999999998754 3345799999987553 378999999999999999999999987742
Q ss_pred CCcccccchhhceeeecCCccchhhhhhhhhHHHHHhhccccCCCCCCCccccccccCCCCCChhhHHHHhhhcCCchhH
Q psy8270 193 EYPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKPKYRDCQTDGLLIEGAHGWTPTMYIRLVQDFGLECET 272 (737)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (737)
+ ..+.|.|+...+.|++.+. .+..+.+.++++.+.
T Consensus 349 ------------------------------------------~-~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~ 383 (516)
T TIGR03377 349 ------------------------------------------G-NDRPCRTADEPLPGSEDPT--AVKTLKKLISLPSPI 383 (516)
T ss_pred ------------------------------------------C-CCCCCCCCCccccCccchH--HHHHHHHHhCCCHHH
Confidence 2 3568999999999998763 455677788999999
Q ss_pred HHHHHHhhcccHHHHHHHHHhhCCCCCcccccCCCCCcchHHHHHHHHH-HhhhchhhHHHHHhhhhhhchHHHHhhHHH
Q psy8270 273 AQHLSNSYGDRAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLAFLNVQAAQEALPM 351 (737)
Q Consensus 273 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 351 (737)
.+++..+||.++..+++. .|..+..++++.+++.+|++|+++ +++.++.| +.||+++.+..+|...+ .+.
T Consensus 384 ~~~~~~~~g~~~~~~~~~-------~~~~~~~ic~ce~v~~~Ei~~ai~~~~a~~l~d-l~RRtr~gmg~cqg~~c-~~~ 454 (516)
T TIGR03377 384 AGSAVYRHGERAPQVLKD-------NRLDNQVICECEMVTAGEVEYAIRELDVNNLVD-LRRRTRLGMGTCQGEFC-AYR 454 (516)
T ss_pred HHHHHHhhCccHHHHHhc-------ccCCCCcCCCCccccHHHHHHHHHhcCCCCHHH-HHHHHhcCcCccccchH-HHH
Confidence 999999999998887753 344556788887889999999999 89999999 99999999998888887 788
Q ss_pred HHHHHHHhhcccHHHHHHHHhhhhH
Q psy8270 352 IIEIMAEELKWSKEEQEAAQKALPM 376 (737)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (737)
++..|++.++|+.++....+..+..
T Consensus 455 ~~~~~~~~~~~~~~~~~~~l~~f~~ 479 (516)
T TIGR03377 455 AAGLLSREGLIDPEQSTELLREFLE 479 (516)
T ss_pred HHHHHHHhhCCChhhhHHHHHHHHH
Confidence 8899999999999888777766544
No 33
>KOG2820|consensus
Probab=99.65 E-value=2e-15 Score=158.94 Aligned_cols=109 Identities=18% Similarity=0.154 Sum_probs=86.5
Q ss_pred eeeCHhhHHHHCC-CCC-cccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcC-CCcEEEEEEeecc
Q psy8270 417 YYLSKKNALELFP-MIR-GDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDD-KGKVRGAHLRDEL 493 (737)
Q Consensus 417 ~~l~~~~~~~~~p-~~~-~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~-~~~V~gV~~~~~~ 493 (737)
+.++.++++++|| ++. ++...|......|++++.+-+.++...++++|+.++.+.+|+.+...+ ++..++|+.++
T Consensus 118 ~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~-- 195 (399)
T KOG2820|consen 118 SVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD-- 195 (399)
T ss_pred hhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc--
Confidence 5677899999999 443 556777777888899999999999999999999999999999987532 35556666433
Q ss_pred cCeeEEEEcCEEEecCCCChhhhhhh-cCCCccccccccc
Q psy8270 494 TGKEWDLKAKSVINATGPFTDSIRRM-DDGQVQKICVPSS 532 (737)
Q Consensus 494 tg~~~~I~Ad~VV~a~Gaws~~L~~~-lG~~lp~~i~p~K 532 (737)
+..+.|+++|+++|+|.+.+++. ++...| +.|.+
T Consensus 196 ---gs~Y~akkiI~t~GaWi~klL~~~~~~~~P--v~~i~ 230 (399)
T KOG2820|consen 196 ---GSIYHAKKIIFTVGAWINKLLPTSLAIGFP--VAPIQ 230 (399)
T ss_pred ---CCeeecceEEEEecHHHHhhcCcccccCCc--cceeE
Confidence 33599999999999999999885 566665 65644
No 34
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.63 E-value=3.6e-15 Score=172.98 Aligned_cols=209 Identities=20% Similarity=0.229 Sum_probs=166.1
Q ss_pred CCcCceeecccCccccccCCCCCCCccccccceeeeec-----CCCeeEeeCCcchhhHhhHHHHHHHHHhhhccccCCC
Q psy8270 119 IRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVS-----PSNLVTIAGGKWTTYRAMASESIDALIEGKFNKAGAE 193 (737)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (737)
+...+|...|+|+||++.+++ ..++.++||+|.|..+ .+|+++++||||||||.||+++++++++.+
T Consensus 300 l~~~~i~~~~aGvRPl~~~~~-~~~~~~~sR~~~ii~~~~~~g~~gli~i~GGkltt~r~~Ae~v~d~v~~~l------- 371 (546)
T PRK11101 300 MAKTRILRAYAGVRPLVASDD-DPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKL------- 371 (546)
T ss_pred CCccCEEEEEEEeccCCCCCC-CCcccccCCCeEEeecccccCCCCeEEEECChHHHHHHHHHHHHHHHHHhc-------
Confidence 455667788999999986544 3457999999987663 278999999999999999999999987642
Q ss_pred CcccccchhhceeeecCCccchhhhhhhhhHHHHHhhccccCCCCCCCccccccccCCCCCChhhHHHHhhhcCCchhHH
Q psy8270 194 YPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKPKYRDCQTDGLLIEGAHGWTPTMYIRLVQDFGLECETA 273 (737)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (737)
+ ..+.|.|+...+.|+..+.... +.+.++++....
T Consensus 372 -----------------------------------------~-~~~~~~t~~~~l~g~~~~~~~~---~~~~~~~~~~~~ 406 (546)
T PRK11101 372 -----------------------------------------G-NTRPCTTADTPLPGSQEPAEVT---LRKVISLPAPLR 406 (546)
T ss_pred -----------------------------------------C-CCCCCcCCCcccCCccccchhh---HHHhcCCCHHHH
Confidence 2 3467999999999998765432 235667899999
Q ss_pred HHHHHhhcccHHHHHHHHHhhCCCCCcccccCCCCCcchHHHHHHHHH-HhhhchhhHHHHHhhhhhhchHHHHhhHHHH
Q psy8270 274 QHLSNSYGDRAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLAFLNVQAAQEALPMI 352 (737)
Q Consensus 274 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 352 (737)
+++..+||.++..+++.. |.....++++.+++.+|++|+++ +++.++.| +.||+++.+..++...+ .+.+
T Consensus 407 ~~~~~~~g~~a~~~~~~~-------~~~~~lic~ce~v~~aEv~~ai~~e~a~~l~d-l~RRtr~gmg~cqg~~c-~~~~ 477 (546)
T PRK11101 407 GSAVYRHGDRAPAWLSEG-------RLDRSLVCECEAVTAGEVRYAVENLNVNNLLD-LRRRTRVGMGTCQGELC-ACRA 477 (546)
T ss_pred HHHHHhcCccHHHHHhhc-------cCCCceecCCCCccHHHHHHHHHhcCCCCHHH-HHHHHhCCcCcchhhHH-HHHH
Confidence 999999999998888653 33334577877889999999999 89999999 99999999998888887 7788
Q ss_pred HHHHHHhhcccHHHHHHHHhhhhHHHHHHHHhhcccc
Q psy8270 353 IEIMAEELKWSKEEQEAAQKALPMIIEIMAEELKWSK 389 (737)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (737)
+..|++..+|+......++..+....+.-....-|..
T Consensus 478 ~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~g~ 514 (546)
T PRK11101 478 AGLLQRFNVTTPAQSIEQLSTFLNERWKGVQPIAWGD 514 (546)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHhhhccccccchhH
Confidence 8899998899998888887777655554444444533
No 35
>KOG2665|consensus
Probab=99.63 E-value=9.5e-16 Score=159.48 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=116.0
Q ss_pred CCCcceeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCc-EEEEEEe
Q psy8270 412 TVKSSYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGK-VRGAHLR 490 (737)
Q Consensus 412 ~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~-V~gV~~~ 490 (737)
.++..+++...++.+++|.. .++.+.+++..|.+|-..++.++.+.....|+++++|-++.++..+..+. -.-+++.
T Consensus 160 ~v~glrmieg~ei~~~EP~c--rgvkAl~sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ 237 (453)
T KOG2665|consen 160 GVPGLRMIEGSEIMEMEPYC--RGVKALLSPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVL 237 (453)
T ss_pred CCCCeeeeccchhhhcChhh--hhhhhhcCCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEe
Confidence 45678999999999999986 34667788899999999999999999999999999999999998763321 1223332
Q ss_pred ecccCeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCCCCCcE----EEEeec-
Q psy8270 491 DELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRV----IFFLPW- 565 (737)
Q Consensus 491 ~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dgr~----iy~~P~- 565 (737)
+++..+++++.||-|+|..++.+....|+++.+.+.|-+|.++.+.+........-++| .+|.|+ +...|+
T Consensus 238 ---ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dPriVpfrG~ylll~~ek~h~vk~niyP-vpd~RFpflGvhftPrm 313 (453)
T KOG2665|consen 238 ---NGKGEEKRTKNVVTCAGLQSDRCAALSGCELDPRIVPFRGEYLLLKPEKLHLVKGNIYP-VPDPRFPFLGVHFTPRM 313 (453)
T ss_pred ---cCccceeEEeEEEEeccccHhHHHHHhCCCCCCeeeeccchhhhcChHHhccccCceee-CCCCCCccccccccCcC
Confidence 35566799999999999999999999999888889999998888755322222222222 234443 334665
Q ss_pred CCeEeeecCC
Q psy8270 566 LKHTIAGTTD 575 (737)
Q Consensus 566 ~g~~ivG~Td 575 (737)
++.+-+|+..
T Consensus 314 ~g~iwlgpna 323 (453)
T KOG2665|consen 314 DGSIWLGPNA 323 (453)
T ss_pred CCceecCCCc
Confidence 3444456554
No 36
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.61 E-value=2.5e-14 Score=158.61 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=110.6
Q ss_pred eeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCe
Q psy8270 417 YYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGK 496 (737)
Q Consensus 417 ~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~ 496 (737)
++++.+++.+.++. .....|.+.+.+|++||..++.+|++.+++ |++++++++|++++.+ +++ +.|++.+ +
T Consensus 104 ~~l~~~e~~~~~~~--~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~---g- 174 (381)
T TIGR03197 104 RWVDAEQASQLAGI--PLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDAN---G- 174 (381)
T ss_pred eeCCHHHHHHhcCC--CCCCCceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCC---C-
Confidence 46788888888763 222334455567889999999999999999 9999999999999886 454 4455322 2
Q ss_pred eEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCCCCCcEEEEeec-CCeEeeecCC
Q psy8270 497 EWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPW-LKHTIAGTTD 575 (737)
Q Consensus 497 ~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dgr~iy~~P~-~g~~ivG~Td 575 (737)
..+.|++||+|+|+|+..+.++. .+| +.|.||+++.++..........++ ..+ .|++|+ +|.+++|++.
T Consensus 175 -~~~~a~~vV~a~G~~~~~l~~~~--~~p--i~p~rg~~~~~~~~~~~~~~~~~~--~~~---~y~~p~~~g~~~iG~t~ 244 (381)
T TIGR03197 175 -EVIAASVVVLANGAQAGQLAQTA--HLP--LRPVRGQVSHLPATEALSALKTVL--CYD---GYLTPANNGEHCIGASY 244 (381)
T ss_pred -CEEEcCEEEEcCCcccccccccc--cCC--ccccccceeeccCCCcccccCceE--eCC---ceecccCCCceEeeccc
Confidence 24899999999999999987663 444 889999999986532111111111 112 267787 4678889877
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH
Q psy8270 576 LPCDVTHHPKPTEDEIMFILQE 597 (737)
Q Consensus 576 e~~~~~~d~~pteeeI~~Lls~ 597 (737)
+... .+..++.+.++.+++.
T Consensus 245 ~~~~--~~~~~~~~~~~~~~~~ 264 (381)
T TIGR03197 245 DRND--DDLALREADHAENLER 264 (381)
T ss_pred CCCC--CCCCcCHHHHHHHHHH
Confidence 5543 3445566666666555
No 37
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.60 E-value=6.4e-15 Score=142.43 Aligned_cols=113 Identities=25% Similarity=0.457 Sum_probs=107.5
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh-----
Q psy8270 624 PINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI----- 698 (737)
Q Consensus 624 ~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~----- 698 (737)
..+++++++++++++|+.||+|++|.|+.++|..+++.+|.++++.++.++|..+|. +++.|+|.+|+.+|...
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 346799999999999999999999999999999999999999999999999999999 89999999999999766
Q ss_pred ---------------cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCCC
Q psy8270 699 ---------------KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGGL 737 (737)
Q Consensus 699 ---------------~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG~ 737 (737)
++|+|+.+++..+++.+|+++++++++++++ +|.|+||.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~ 144 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGE 144 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCce
Confidence 5899999999999999999999999999999 99999984
No 38
>KOG0027|consensus
Probab=99.57 E-value=3.1e-14 Score=138.03 Aligned_cols=111 Identities=29% Similarity=0.544 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh--------
Q psy8270 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI-------- 698 (737)
Q Consensus 627 ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~-------- 698 (737)
++.+++.+++++|+.||++++|+|+..+|..+++.+|..++.++++.+++++|.+++|.|+|+||+.++...
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 466788999999999999999999999999999999999999999999999999999999999999988733
Q ss_pred ----------------cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCCC
Q psy8270 699 ----------------KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGGL 737 (737)
Q Consensus 699 ----------------~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG~ 737 (737)
++|+|+.+||++++..+|++++.+++++|+. +|.|+||.
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~ 137 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGK 137 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCe
Confidence 4899999999999999999999999999999 99999984
No 39
>KOG0028|consensus
Probab=99.49 E-value=2.8e-13 Score=128.63 Aligned_cols=114 Identities=20% Similarity=0.448 Sum_probs=107.7
Q ss_pred ccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh----
Q psy8270 623 IPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI---- 698 (737)
Q Consensus 623 i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~---- 698 (737)
....+++++.++++.+|..||.+++|+|+.+||+.+++.+|+.+..+++.+++.++|+++.|.|+|++|+..++.+
T Consensus 23 ~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~ 102 (172)
T KOG0028|consen 23 PKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER 102 (172)
T ss_pred CCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc
Confidence 3446788888999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ----------------cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCC
Q psy8270 699 ----------------KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGG 736 (737)
Q Consensus 699 ----------------~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG 736 (737)
.+|.|++.+|+.+...||++++++++.+||. .|+++||
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dg 157 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDG 157 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccc
Confidence 4899999999999999999999999999999 9999997
No 40
>KOG4254|consensus
Probab=99.44 E-value=2e-12 Score=140.61 Aligned_cols=74 Identities=30% Similarity=0.462 Sum_probs=64.3
Q ss_pred ccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 434 DKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 434 ~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
++..|++.|+.|.+. .+..++++.++++|++|++.+.|.+|..+ +|+++||.+++ |+ .++++.||..|++|-
T Consensus 250 d~~~g~~~Yp~GG~G--avs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~d---G~--ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 250 DGHKGGWGYPRGGMG--AVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLAD---GT--EVRSKIVVSNATPWD 321 (561)
T ss_pred cccCCcccCCCCChh--HHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecC---Cc--EEEeeeeecCCchHH
Confidence 456788888888776 57889999999999999999999999999 79999999987 54 488999999999997
Q ss_pred hh
Q psy8270 514 DS 515 (737)
Q Consensus 514 ~~ 515 (737)
.-
T Consensus 322 Tf 323 (561)
T KOG4254|consen 322 TF 323 (561)
T ss_pred HH
Confidence 54
No 41
>PRK07121 hypothetical protein; Validated
Probab=99.38 E-value=2.2e-11 Score=139.88 Aligned_cols=65 Identities=32% Similarity=0.442 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEc-CEEEecCCCChh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKA-KSVINATGPFTD 514 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~A-d~VV~a~Gaws~ 514 (737)
+...++..|...+++.|++|+++++|++|+.+++|+|.||.+.+ +++...+.| +.||+|||.|+.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR--YGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe--CCcEEEEEeCCEEEECCCCcCc
Confidence 46678999999999999999999999999987457999998865 455557899 999999998774
No 42
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.35 E-value=1.5e-11 Score=141.17 Aligned_cols=68 Identities=26% Similarity=0.476 Sum_probs=53.0
Q ss_pred ceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCC
Q psy8270 436 LCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGP 511 (737)
Q Consensus 436 ~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Ga 511 (737)
..+++.++.|.+. .++++|++.++++||+|+++++|++|..+ +|+.++++..+ + ..+.+|.||.++..
T Consensus 212 ~~~G~~~p~GG~~--al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~---g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 212 LSGGVFYPRGGMG--ALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSD---G--ENIEADAVVSNADP 279 (487)
T ss_pred ccCCeeeeeCCHH--HHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccc---c--ceeccceeEecCch
Confidence 3445555555444 79999999999999999999999999998 77755555332 3 36899999999887
No 43
>KOG0030|consensus
Probab=99.34 E-value=5.3e-12 Score=117.31 Aligned_cols=108 Identities=16% Similarity=0.362 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC--CCCceeHHHHHHHHHhh------
Q psy8270 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSN--MNGQVELDEYLQMMSAI------ 698 (737)
Q Consensus 627 ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d--~dG~I~feEF~~ll~~~------ 698 (737)
.+++++.+++++|..||..+||+|+.++..++|+.+|.++++.++.+.+.+.+.+ +-.+|+|++|+.++..+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 4667789999999999999999999999999999999999999999999888776 45689999999988776
Q ss_pred ----------------cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc--cccCC
Q psy8270 699 ----------------KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS--VERSG 734 (737)
Q Consensus 699 ----------------~~G~is~~elk~~l~~lg~~ls~~el~~~i~--~D~ng 734 (737)
++|.|...||+++|+++|++++++|+++++. .|.||
T Consensus 85 ~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG 138 (152)
T KOG0030|consen 85 GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNG 138 (152)
T ss_pred CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCC
Confidence 4899999999999999999999999999999 77666
No 44
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.31 E-value=7.9e-11 Score=133.18 Aligned_cols=69 Identities=28% Similarity=0.394 Sum_probs=57.1
Q ss_pred eeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 445 GQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 445 g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
+..++..++..|.+.+++.|++++++++|++|+.+++++|+||.+.+. +++...+.++.||+|||.|+.
T Consensus 125 g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~-~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 125 GAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGK-GKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeC-CCeEEEEecceEEEecCCCCC
Confidence 344667899999999999999999999999999864688999988752 344345789999999999986
No 45
>PTZ00183 centrin; Provisional
Probab=99.31 E-value=3.3e-11 Score=116.25 Aligned_cols=114 Identities=20% Similarity=0.480 Sum_probs=105.1
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh-----
Q psy8270 624 PINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI----- 698 (737)
Q Consensus 624 ~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~----- 698 (737)
+..++++++++++.+|..+|.+++|.|+..||..+++.+|..++.++++.++..+|.+++|.|+|+||+.++...
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 456789999999999999999999999999999999999988999999999999999999999999998876431
Q ss_pred ---------------cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCCC
Q psy8270 699 ---------------KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGGL 737 (737)
Q Consensus 699 ---------------~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG~ 737 (737)
++|+|+.+||..++..++..++.++++.++. +|.|+||.
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~ 142 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGE 142 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Confidence 4799999999999999999999999999999 99999883
No 46
>PTZ00184 calmodulin; Provisional
Probab=99.28 E-value=4.6e-11 Score=113.64 Aligned_cols=114 Identities=22% Similarity=0.478 Sum_probs=104.6
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh-----
Q psy8270 624 PINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI----- 698 (737)
Q Consensus 624 ~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~----- 698 (737)
+.++++++.+.++..|..+|.+++|.|+.++|..++..++..++.++++.+++.+|.+++|.|+|+||+.++...
T Consensus 2 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 346788999999999999999999999999999999999998999999999999999999999999999877532
Q ss_pred ---------------cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCCC
Q psy8270 699 ---------------KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGGL 737 (737)
Q Consensus 699 ---------------~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG~ 737 (737)
++|+++.++|.+++..++..++.++++.++. +|.++||.
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~ 136 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQ 136 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCc
Confidence 4799999999999999998999999999999 99999873
No 47
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.27 E-value=1.9e-10 Score=134.83 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=58.9
Q ss_pred eEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEc-CEEEecCCCChhhhh
Q psy8270 446 QQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKA-KSVINATGPFTDSIR 517 (737)
Q Consensus 446 ~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~A-d~VV~a~Gaws~~L~ 517 (737)
.+++..++.+|.+.++++|++|+++++|++|+.+ +|+|+||.+.. +++...+.| +.||+|||+|+..+.
T Consensus 213 ~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~ 282 (581)
T PRK06134 213 LVNGNALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPA 282 (581)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHH
Confidence 4678889999999999999999999999999987 78999998765 233446889 999999999998654
No 48
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.27 E-value=2.2e-10 Score=132.18 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=56.2
Q ss_pred eeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 445 GQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 445 g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
+...+..++..|...+++.|++++++++|++|+.+ +|+|.||.+... +++...+.|+.||+|+|.|+..
T Consensus 185 g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~-~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 185 GSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKIN-GKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred CCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEeC-CCeEEEEecCeEEEeCCCcccC
Confidence 33445678889999999999999999999999887 789999987642 3344579999999999988754
No 49
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.27 E-value=1.7e-10 Score=132.55 Aligned_cols=70 Identities=26% Similarity=0.493 Sum_probs=57.0
Q ss_pred eeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 437 CGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 437 ~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
.++..++.|.. ..++.+|.+.++++|++|+++++|++|..+ ++++.+|++.+ ++ .+.|+.||+|+|+|..
T Consensus 218 ~~g~~~~~gG~--~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~---g~--~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 218 YGGINYPKGGV--GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLAD---GE--KIYAKRIVSNATRWDT 287 (493)
T ss_pred cceEecCCChH--HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCC---CC--EEEcCEEEECCChHHH
Confidence 34545555533 479999999999999999999999999988 78899998754 33 5899999999999864
No 50
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.26 E-value=4.1e-11 Score=116.18 Aligned_cols=104 Identities=29% Similarity=0.597 Sum_probs=92.8
Q ss_pred CCCCCCHHHHHHHHHHhcc--c--hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHH
Q psy8270 582 HHPKPTEDEIMFILQEKQL--K--EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRR 657 (737)
Q Consensus 582 ~d~~pteeeI~~Lls~~D~--d--~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~ 657 (737)
.+..++..++..++..++. . +|.+|+ .+++..+.+. +..++|+.+|+.||+|++|+|+..+|..
T Consensus 49 lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl-~~ms~~~~~~-----------~~~Eel~~aF~~fD~d~dG~Is~~eL~~ 116 (160)
T COG5126 49 LGFNPSEAEINKLFEEIDAGNETVDFPEFL-TVMSVKLKRG-----------DKEEELREAFKLFDKDHDGYISIGELRR 116 (160)
T ss_pred cCCCCcHHHHHHHHHhccCCCCccCHHHHH-HHHHHHhccC-----------CcHHHHHHHHHHhCCCCCceecHHHHHH
Confidence 4678899999999999984 3 999999 6888666543 2346799999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 658 GLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 658 ~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
+++.+|..+++++++++++.+|.+++|.|+|++|+.++..
T Consensus 117 vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 117 VLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 9999999999999999999999999999999999998764
No 51
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.25 E-value=2.7e-10 Score=133.34 Aligned_cols=66 Identities=24% Similarity=0.418 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcC-EEEecCCCChhhh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAK-SVINATGPFTDSI 516 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad-~VV~a~Gaws~~L 516 (737)
....++..|...+++.|++|+++++|++|+.+ +++|+||.+.+. +....+.++ .||+|||.|+...
T Consensus 212 ~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~--~~~~~i~a~k~VVlAtGg~~~n~ 278 (574)
T PRK12842 212 SGNALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDA--GGERRITARRGVVLACGGFSHDL 278 (574)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcC--CceEEEEeCCEEEEcCCCccchH
Confidence 45678888999999999999999999999988 789999988752 223357885 7999999999654
No 52
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.25 E-value=2e-10 Score=128.73 Aligned_cols=68 Identities=32% Similarity=0.449 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
....++..+.+.++++|++|+++++|++|+.+ +++|+||.+.+..+++...|+|+.||+|||.++.++
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~ 206 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGGEL 206 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGGHH
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccccc
Confidence 45678899999999999999999999999998 789999999854467777899999999999999733
No 53
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.24 E-value=2.8e-10 Score=132.66 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEc-CEEEecCCCChhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKA-KSVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~A-d~VV~a~Gaws~~ 515 (737)
...++.+|...+++.|++|+++++|++|+.+ +|+|+||.+.. .++...+.| +.||+|||.|...
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH--RGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE--CCcEEEEEcCCEEEEecCCcccc
Confidence 4678888998899999999999999999986 78999998765 354556777 5799999998865
No 54
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.22 E-value=3.2e-10 Score=132.80 Aligned_cols=69 Identities=28% Similarity=0.393 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcC-EEEecCCCChh--hhhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAK-SVINATGPFTD--SIRRM 519 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad-~VV~a~Gaws~--~L~~~ 519 (737)
...++..|...+++.|++|+++++|++|+.+++|+|+||.+.. .++...|.|+ .||+|||.+.. ++++.
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER--EGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe--CCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 3456667777888999999999999999987568999998765 4556679997 59999999884 44444
No 55
>KOG2852|consensus
Probab=99.22 E-value=1.6e-10 Score=119.88 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=90.6
Q ss_pred cceeEChHHHHHHHHHHHHHCC-cEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcC
Q psy8270 443 YDGQQDDARMCLAIALTATRHG-ATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDD 521 (737)
Q Consensus 443 ~~g~Vdp~~~v~al~~~A~~~G-ve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG 521 (737)
..++++|..++..|+..|++.| |+++++ .|+++..+ ++++.+|..... .+......+.++|+++|+|+..+++.+.
T Consensus 140 ttaqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dE-k~r~n~v~~ae~-~~ti~~~d~~~ivvsaGPWTskllp~~r 216 (380)
T KOG2852|consen 140 TTAQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDE-KHRINSVPKAEA-EDTIIKADVHKIVVSAGPWTSKLLPFTR 216 (380)
T ss_pred ccceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecc-cccccccchhhh-cCceEEeeeeEEEEecCCCchhhccccc
Confidence 3468999999999999998776 888864 68888755 788877765421 1223456778999999999999966543
Q ss_pred CCccccccccceEEEEecCCCCCCCc-eeeec-CCCCC-cE----EEEeecCCeEeeecCCCCC---CCCCCCCCCHHHH
Q psy8270 522 GQVQKICVPSSGVHIVLPGYYSPDQM-GLLDP-STSDG-RV----IFFLPWLKHTIAGTTDLPC---DVTHHPKPTEDEI 591 (737)
Q Consensus 522 ~~lp~~i~p~KG~~lvv~~~~~~~~~-~i~~~-~~~Dg-r~----iy~~P~~g~~ivG~Tde~~---~~~~d~~pteeeI 591 (737)
+...|-..++++....+... .++.. .+.|+ .+ .|..+.+..+++|.++... .+..+....++.+
T Consensus 217 ------IsglrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~npeki 290 (380)
T KOG2852|consen 217 ------ISGLRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPEDSDDVFVNPEKI 290 (380)
T ss_pred ------cceeeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecCCceEEEecCCCccccCCcccccceeCHHHH
Confidence 45556556666554332222 12211 12233 11 3444444678888887543 2234445555555
Q ss_pred HHHHHH
Q psy8270 592 MFILQE 597 (737)
Q Consensus 592 ~~Lls~ 597 (737)
..+-+.
T Consensus 291 ~~Lk~~ 296 (380)
T KOG2852|consen 291 IELKEM 296 (380)
T ss_pred HHHHHH
Confidence 555443
No 56
>PRK12839 hypothetical protein; Provisional
Probab=99.21 E-value=5.8e-10 Score=130.29 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=56.1
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
+++..++..|++.+++.|++|+++++|++|+.+++|+|+||.+.+. +++...+.++.||+|||.|+...
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~-~g~~~i~aak~VVLAtGGf~~n~ 279 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGP-DGAVTVEATRGVVLATGGFPNDV 279 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeC-CCcEEEEeCCEEEEcCCCcccCH
Confidence 4788899999999999999999999999998764689999987653 34332344589999999999744
No 57
>PRK06185 hypothetical protein; Provisional
Probab=99.21 E-value=7.5e-10 Score=123.66 Aligned_cols=122 Identities=19% Similarity=0.183 Sum_probs=76.9
Q ss_pred EChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 447 QDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
+....+...|.+.+.+. |++++++++|+++..+ ++++.+|++... +++ ..+.|+.||.|.|.|+. +.+.++.+.+
T Consensus 105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~-~g~-~~i~a~~vI~AdG~~S~-vr~~~gi~~~ 180 (407)
T PRK06185 105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTP-DGP-GEIRADLVVGADGRHSR-VRALAGLEVR 180 (407)
T ss_pred eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcC-CCc-EEEEeCEEEECCCCchH-HHHHcCCCcc
Confidence 33456777787777665 8999999999999887 678877876542 232 36999999999999996 7777777654
Q ss_pred ccccccceEEEEecCCCCCCCc-eeeecCCCCCcEEEEeecCCeEeeecCC
Q psy8270 526 KICVPSSGVHIVLPGYYSPDQM-GLLDPSTSDGRVIFFLPWLKHTIAGTTD 575 (737)
Q Consensus 526 ~~i~p~KG~~lvv~~~~~~~~~-~i~~~~~~Dgr~iy~~P~~g~~ivG~Td 575 (737)
..+.++..+.+..+...... ..+.. ..++..+.++|..+.+.++.+.
T Consensus 181 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~llP~~~~~~i~~~~ 228 (407)
T PRK06185 181 --EFGAPMDVLWFRLPREPDDPESLMGR-FGPGQGLIMIDRGDYWQCGYVI 228 (407)
T ss_pred --ccCCCceeEEEecCCCCCCCcccceE-ecCCcEEEEEcCCCeEEEEEEe
Confidence 34444554444322211111 11111 1234455677876655555444
No 58
>KOG0031|consensus
Probab=99.21 E-value=1.4e-10 Score=109.57 Aligned_cols=105 Identities=21% Similarity=0.491 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh-------
Q psy8270 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI------- 698 (737)
Q Consensus 626 ~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~------- 698 (737)
.+++.++++++++|...|+|++|.|+.++|+.++-++|...+++++..|+++. .|-|+|.-|+.++-.+
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe 100 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPE 100 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHH
Confidence 45788999999999999999999999999999999999999999999999885 6789999999988554
Q ss_pred -------------cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc---cccCC
Q psy8270 699 -------------KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS---VERSG 734 (737)
Q Consensus 699 -------------~~G~is~~elk~~l~~lg~~ls~~el~~~i~---~D~ng 734 (737)
++|.|..+.|+++|.+.|++++++|+++|+. .|.+|
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G 152 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKG 152 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCC
Confidence 4799999999999999999999999999999 55555
No 59
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.20 E-value=4.7e-10 Score=127.91 Aligned_cols=64 Identities=28% Similarity=0.374 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
+..++..|.+.+++.|++++++++|++|+.+ +++|++|.+... +++...+.|+.||+|||.|..
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~-~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSA-AGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEcc-CCceEEEECCEEEECCCCCCC
Confidence 5678889999999999999999999999987 789999987432 344557899999999998764
No 60
>KOG3923|consensus
Probab=99.18 E-value=5e-10 Score=116.83 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=105.2
Q ss_pred cceeeCHhhHHHHCCCCCcccceeEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeeccc
Q psy8270 415 SSYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELT 494 (737)
Q Consensus 415 ~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~t 494 (737)
.++.++.+++. +||.- ..-+..+......+.+++..|...+.++|+++. .-+|.++..-
T Consensus 121 ~fr~l~e~EL~-~f~~~----~~~G~~~Tt~~sE~~~ylpyl~k~l~e~Gvef~-~r~v~~l~E~--------------- 179 (342)
T KOG3923|consen 121 GFRDLTERELL-GFPDY----STYGIHFTTYLSEGPKYLPYLKKRLTENGVEFV-QRRVESLEEV--------------- 179 (342)
T ss_pred hhhcCCHHHhc-CCCCc----cccceeEEEeeccchhhhHHHHHHHHhcCcEEE-EeeeccHHHh---------------
Confidence 34667777776 56532 344556666667889999999999999999997 4455555321
Q ss_pred CeeEEEEcCEEEecCCCChhhhhhhcCCCccccccccceEEEEecCCCCCCCceeeecCCCCCcEEEEeecCCeEeeecC
Q psy8270 495 GKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWLKHTIAGTT 574 (737)
Q Consensus 495 g~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~~i~p~KG~~lvv~~~~~~~~~~i~~~~~~Dgr~iy~~P~~g~~ivG~T 574 (737)
. .=.+|.||||||.|+..|+.. + . +.|.||+++.++.+.. .+.++. ...+ .|++|.-+.+.+|++
T Consensus 180 ~---~~~~DVivNCtGL~a~~L~gD---d-~--~yPiRGqVl~V~ApWv--khf~~~---D~~~-ty~iP~~~~V~lGg~ 244 (342)
T KOG3923|consen 180 A---RPEYDVIVNCTGLGAGKLAGD---D-D--LYPIRGQVLKVDAPWV--KHFIYR---DFSR-TYIIPGTESVTLGGT 244 (342)
T ss_pred c---cCCCcEEEECCccccccccCC---c-c--eeeccceEEEeeCCce--eEEEEe---cCCc-cEEecCCceEEEccc
Confidence 0 023799999999999998533 2 2 8999999999998653 222331 2222 378999889999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHh
Q psy8270 575 DLPCDVTHHPKPTEDEIMFILQEK 598 (737)
Q Consensus 575 de~~~~~~d~~pteeeI~~Lls~~ 598 (737)
..+.+ ++..++.++...+++..
T Consensus 245 ~Q~g~--w~~ei~~~D~~dIl~rc 266 (342)
T KOG3923|consen 245 KQEGN--WNLEITDEDRRDILERC 266 (342)
T ss_pred cccCc--ccCcCChhhHHHHHHHH
Confidence 97655 77889999999998873
No 61
>KOG0027|consensus
Probab=99.17 E-value=2.2e-10 Score=111.06 Aligned_cols=108 Identities=27% Similarity=0.596 Sum_probs=92.1
Q ss_pred CCCCCCHHHHHHHHHHhccc-----hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHH
Q psy8270 582 HHPKPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIR 656 (737)
Q Consensus 582 ~d~~pteeeI~~Lls~~D~d-----~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~ 656 (737)
.+..++..++..+++.+|.+ +|.+|+ .++.......... +...++++++|+.||+|++|+|+.+||+
T Consensus 37 lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~-~l~~~~~~~~~~~-------~~~~~el~eaF~~fD~d~~G~Is~~el~ 108 (151)
T KOG0027|consen 37 LGQNPTEEELRDLIKEIDLDGDGTIDFEEFL-DLMEKLGEEKTDE-------EASSEELKEAFRVFDKDGDGFISASELK 108 (151)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCeEcHHHHH-HHHHhhhcccccc-------cccHHHHHHHHHHHccCCCCcCcHHHHH
Confidence 45678999999999999987 999999 4665444322110 0235689999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 657 RGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 657 ~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
.+|..+|.+.+.++++.+++.+|.++||.|+|+||+.+|..
T Consensus 109 ~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 109 KVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 99999999999999999999999999999999999999864
No 62
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.15 E-value=1.1e-09 Score=115.69 Aligned_cols=70 Identities=24% Similarity=0.321 Sum_probs=56.1
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecc------cCeeEEEEcCEEEecCCCChhhh
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDEL------TGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~------tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
+++..++..|+..+.+.|++++++++|+++..++++++.||.+.... ..+...+.|+.||+|||.++.-.
T Consensus 101 vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 101 ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 47788999999999999999999999999987634589998875311 11234799999999999998754
No 63
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.14 E-value=1.2e-09 Score=128.75 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
...++..|...+++.|+++++++.|++|+.+++|+|.||.+.+..+++...+.|+.||+|||.+....
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~ 232 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAY 232 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcccc
Confidence 56788999999999999999999999999833789999987654457666899999999999987643
No 64
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.14 E-value=1.8e-09 Score=125.96 Aligned_cols=64 Identities=25% Similarity=0.363 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcC-EEEecCCCChhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAK-SVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad-~VV~a~Gaws~~ 515 (737)
...++..|.+.+++.|++++++++|++|+.+ +|+|+||.+.. +++...+.|+ .||+|||.++..
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVR--DGREVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEE--CCeEEEEEecceEEEecCCccCC
Confidence 4668888888999999999999999999987 79999998865 4555678895 799999998863
No 65
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.14 E-value=1e-09 Score=130.19 Aligned_cols=67 Identities=27% Similarity=0.304 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
...++..|...+.+.|+++++++.|++|+.+ +|+|.||.+.+..+|+...|.|+.||+|||.|....
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y 223 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATGGYGRIY 223 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCC
Confidence 3457778888889999999999999999987 789999998764467666789999999999988653
No 66
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.12 E-value=7.7e-09 Score=115.71 Aligned_cols=122 Identities=27% Similarity=0.265 Sum_probs=72.9
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCccc
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQK 526 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~ 526 (737)
++-..+.+.|+..|.+.|++++.+++|..+..++++.+.++. . +. .++.|+.||.|.|+.+ .+.+.++.....
T Consensus 92 v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~----~~-~e~~a~~vI~AdG~~s-~l~~~lg~~~~~ 164 (396)
T COG0644 92 VDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-A----GD-DEVRAKVVIDADGVNS-ALARKLGLKDRK 164 (396)
T ss_pred EEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-c----CC-EEEEcCEEEECCCcch-HHHHHhCCCCCC
Confidence 467788899999999999999999999999998334443333 2 22 4699999999999855 455566655110
Q ss_pred cccccceEEEEecCCCCCCC-ceeeec-CCCCCcEEEEeecCC-eEeeecCC
Q psy8270 527 ICVPSSGVHIVLPGYYSPDQ-MGLLDP-STSDGRVIFFLPWLK-HTIAGTTD 575 (737)
Q Consensus 527 ~i~p~KG~~lvv~~~~~~~~-~~i~~~-~~~Dgr~iy~~P~~g-~~ivG~Td 575 (737)
+-.-.-++.-+...+..... ..++.+ ....+.+.++.|.++ ..-||...
T Consensus 165 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~ 216 (396)
T COG0644 165 PEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGV 216 (396)
T ss_pred hhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEE
Confidence 00001122222222211112 222221 123345667889874 56777654
No 67
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.12 E-value=4.4e-10 Score=129.32 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=53.6
Q ss_pred eEEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 438 GAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 438 g~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
++..++.|.. ..++.+|.+.++++|++|+++++|++|..+ ++++++|++.+ ++ .+.|+.||+|+++..
T Consensus 209 ~g~~~~~gG~--~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~---g~--~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 209 WGVWFPRGGT--GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLAD---GE--RLDADAVVSNADLHH 276 (502)
T ss_pred ceEEEcCCCH--HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECC---CC--EEECCEEEECCcHHH
Confidence 3444444432 579999999999999999999999999987 67888887654 33 589999999998744
No 68
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.11 E-value=1.2e-09 Score=126.99 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeec---ccCeeEEEEcCEEEecCCCChh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDE---LTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~---~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
....++..|...+++.|+++++++.|++|+.+++|+|.||.+.+. ..+....+.|+.||+|||.++.
T Consensus 142 ~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 142 TGAEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 456788899999999999999999999999874579999987631 0122246899999999999885
No 69
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.11 E-value=7.7e-09 Score=114.74 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=92.1
Q ss_pred CHhhHHHHCCCCC-----cccceeEEEecceeEChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecc
Q psy8270 420 SKKNALELFPMIR-----GDKLCGAIVYYDGQQDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDEL 493 (737)
Q Consensus 420 ~~~~~~~~~p~~~-----~~~~~g~~~~~~g~Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~ 493 (737)
+++++.+..|.+- .+.+.+.+.....-||=..+++.|...+.+. |++++++++|++|.+. ++.-|.|.+.+..
T Consensus 146 d~~~i~~w~PLvm~gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~-~dg~W~v~~~~~~ 224 (488)
T PF06039_consen 146 DPEQIAEWAPLVMEGRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRN-GDGRWEVKVKDLK 224 (488)
T ss_pred CHHHHHhhCCeecCCCCCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEEC-CCCCEEEEEEecC
Confidence 4667777777653 2233333333333578888999999998888 9999999999999998 4444788887766
Q ss_pred cCeeEEEEcCEEEecCCCChhhhhhhcCCCc--cccccccceEEEEecCC
Q psy8270 494 TGKEWDLKAKSVINATGPFTDSIRRMDDGQV--QKICVPSSGVHIVLPGY 541 (737)
Q Consensus 494 tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l--p~~i~p~KG~~lvv~~~ 541 (737)
+++...++|+.|++.||++|=.|++..|++. .....|+-|+.++.+++
T Consensus 225 ~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 225 TGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRCKNP 274 (488)
T ss_pred CCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccceEEecCCH
Confidence 7777889999999999999999999988742 23367889999988654
No 70
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=2.8e-09 Score=124.59 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
...++..|...+.+.|+++++++.+++|+.+ +|+|.||.+.+..+++...+.|+.||+|||.+.
T Consensus 135 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 135 GMALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4568888888888889999999999999987 799999988764455556789999999999987
No 71
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.09 E-value=4e-09 Score=121.88 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcC-EEEecCCCChhh
Q psy8270 449 DARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAK-SVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad-~VV~a~Gaws~~ 515 (737)
...++..+...+.+. |++|+++++|++|+.+ +|+|.||.+.. +++...+.|+ .||+|||.|...
T Consensus 172 G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 172 GRALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVER--GGERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred cHHHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEE--CCcEEEEEeCceEEEeCCCccCC
Confidence 345777777766654 9999999999999987 78999998754 4556679996 799999998543
No 72
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=4.2e-09 Score=123.83 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
...++..|...+++.|+++++++.|++|+.+++|+|.||.+.+..+++...|.|+.||+|||.+....
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~ 215 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAY 215 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcccc
Confidence 45688899998999999999999999999874489999987553356666799999999999988654
No 73
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.08 E-value=6.8e-09 Score=121.68 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=55.9
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEc-CEEEecCCCChhh
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKA-KSVINATGPFTDS 515 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~A-d~VV~a~Gaws~~ 515 (737)
.++..++.+|...++++|++++++++|++|+.+ +++|.||.+.. +++...+.| +.||+|||++...
T Consensus 218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 218 VMGNALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQ--GGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEec--CCeEEEEEccceEEECCCCcccC
Confidence 357789999999999999999999999999887 78999998765 455556887 6899999998864
No 74
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=4.4e-09 Score=123.41 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
...++..|...+.+.|+++++++.|++|+.+++|+|.||.+.+..+++...|.|+.||+|||.++...
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~ 209 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRIY 209 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccccc
Confidence 46788889888888999999999999999854689999987654456666799999999999988643
No 75
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.07 E-value=2.6e-09 Score=126.17 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
...++..|...+.+.|++++.++.+++|+.+++|+|.||.+.+..+++...|.|+.||+|||.+....
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~ 253 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRAY 253 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcccc
Confidence 56788899998989999999999999998764689999987654456666799999999999988654
No 76
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.06 E-value=7.5e-09 Score=115.21 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=62.4
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCccc
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQK 526 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp~ 526 (737)
++...+...|.+.+++.|++++++++|++++.+ ++.+ .|++.+ ++ ++.|+.||.|+|.++ .+.+.++...+.
T Consensus 110 v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v-~v~~~~---g~--~~~a~~vV~AdG~~S-~vr~~~g~~~~~ 181 (392)
T PRK08773 110 VENDLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRV-RLRLDD---GR--RLEAALAIAADGAAS-TLRELAGLPVSR 181 (392)
T ss_pred EEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeE-EEEECC---CC--EEEeCEEEEecCCCc-hHHHhhcCCceE
Confidence 455678889999999999999999999999876 4544 355432 32 589999999999999 577777776543
Q ss_pred cccccceEEEEec
Q psy8270 527 ICVPSSGVHIVLP 539 (737)
Q Consensus 527 ~i~p~KG~~lvv~ 539 (737)
...+.++....++
T Consensus 182 ~~~~~~~~~~~v~ 194 (392)
T PRK08773 182 HDYAQRGVVAFVD 194 (392)
T ss_pred EEeccEEEEEEEE
Confidence 3344456555444
No 77
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.04 E-value=3.2e-09 Score=122.60 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
.+..++.+|.+.++ .|+++++++.|++|..+ +++|.||.+.+. +++...+.|+.||+|||.++.
T Consensus 128 ~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~-~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 128 TGKNLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGRCIGVLTKDS-EGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred cHHHHHHHHHHHHh-cCCEEEECeEhhheeec-CCEEEEEEEEEC-CCcEEEEEcCeEEEecCCCcc
Confidence 45678888888775 69999999999999887 789999987663 455557899999999999886
No 78
>PLN02815 L-aspartate oxidase
Probab=99.04 E-value=3.6e-09 Score=124.00 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCC---cEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 448 DDARMCLAIALTATRH-GATVANHVRVTNLIKDDKG---KVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 448 dp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~---~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
....++..|.+.+++. |+++++++.+++|+.+++| +|.||.+.+..+++...|.|+.||+|||.+...
T Consensus 153 tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 153 TGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 3567888888888765 8999999999999975334 388998765445666678999999999998763
No 79
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=3.7e-09 Score=124.02 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCC---CcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDK---GKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~---~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
.+..++..|...+++.|+++++++.|++|+.+++ |+|.||.+.+..+++...|.|+.||+|||.++...
T Consensus 138 tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~ 209 (583)
T PRK08205 138 TGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVY 209 (583)
T ss_pred CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccC
Confidence 3567888899889999999999999999987732 89999987543356555789999999999988654
No 80
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.02 E-value=7.1e-09 Score=117.40 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHH-CCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 449 DARMCLAIALTATR-HGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 449 p~~~v~al~~~A~~-~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
+..++..|...+++ .|++|+++++|++|+.+ +++|.||.+.+ +++...+.|+.||+|||.++.
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLK--DNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEE--CCcEEEEEcCeEEEccCcccc
Confidence 45788888877765 59999999999999887 68899987654 344446899999999999775
No 81
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=4.7e-09 Score=124.22 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=50.9
Q ss_pred HHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 454 LAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 454 ~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
..|...+++.|++|++++.|++|+.+ +|+|.||.+.+..+++...+.|+.||+|||.++..
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 55666777889999999999999987 78999999876434655579999999999998864
No 82
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=3.8e-09 Score=123.75 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
+..++..|.+.+++.|+++++++.|++|..+ +|+|.||.+.+..+++...+.|+.||+|||.|+...
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~ 200 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVF 200 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCC
Confidence 4678889998889999999999999999987 789999986543345555689999999999998653
No 83
>KOG0036|consensus
Probab=99.02 E-value=2.3e-09 Score=115.45 Aligned_cols=110 Identities=15% Similarity=0.284 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh-------
Q psy8270 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGET-ISGEELHEILREIDSNMNGQVELDEYLQMMSAI------- 698 (737)
Q Consensus 627 ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~-~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~------- 698 (737)
.+++...+++..|+.||.+++|.++..+|.+.+.++..+ ++.+..+.+|+.+|.|.||.|+|+||.+++...
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~ 87 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRI 87 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHH
Confidence 456666889999999999999999999999999999877 777778899999999999999999999988765
Q ss_pred -------cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCC
Q psy8270 699 -------KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGG 736 (737)
Q Consensus 699 -------~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG 736 (737)
++|.|+.+|+.+.|..+|.++++++++++++ +|++|++
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~ 133 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKA 133 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCe
Confidence 5999999999999999999999999999999 9999975
No 84
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=8.2e-09 Score=121.23 Aligned_cols=68 Identities=24% Similarity=0.165 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHHCC----cEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 448 DDARMCLAIALTATRHG----ATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 448 dp~~~v~al~~~A~~~G----ve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
.+..++..|...+++.+ +++++++.+++++.+++|+|.||.+.+..+++...+.|+.||+|||.++..
T Consensus 131 tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 131 TGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII 202 (589)
T ss_pred cHHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence 35678888887776654 789999999999985468999999876445555578999999999998864
No 85
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=1.1e-08 Score=120.08 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
...++..|.+.+.+.|++++.++.|++|+.+++|+|.||.+.+..+++...+.|+.||+|||.++...
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~ 214 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRIF 214 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccccc
Confidence 45688889888889999999999999999864689999988654456656789999999999988643
No 86
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.00 E-value=1.8e-08 Score=111.76 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=59.9
Q ss_pred eEChHHHHHHHHHHHHHCC-cEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 446 QQDDARMCLAIALTATRHG-ATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 446 ~Vdp~~~v~al~~~A~~~G-ve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
.++...+...|.+.+++.| ++++ +++|+++..+ ++.+ .|++.+ + .++.|+.||.|+|+|+. +.+.++...
T Consensus 107 ~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~-~~~~-~v~~~~---g--~~~~a~~vI~adG~~S~-vr~~~~~~~ 177 (388)
T PRK07608 107 IVESSLIERALWAALRFQPNLTWF-PARAQGLEVD-PDAA-TLTLAD---G--QVLRADLVVGADGAHSW-VRSQAGIKA 177 (388)
T ss_pred EEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEec-CCeE-EEEECC---C--CEEEeeEEEEeCCCCch-HHHhcCCCc
Confidence 3567789999999999888 8998 9999999876 4443 355433 3 25999999999999986 667777655
Q ss_pred cccccccceEEEEec
Q psy8270 525 QKICVPSSGVHIVLP 539 (737)
Q Consensus 525 p~~i~p~KG~~lvv~ 539 (737)
+.......+....++
T Consensus 178 ~~~~~~~~~~~~~~~ 192 (388)
T PRK07608 178 ERRPYRQTGVVANFK 192 (388)
T ss_pred cccccCCEEEEEEEE
Confidence 422222345555444
No 87
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.99 E-value=1.5e-08 Score=116.45 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
...++.+|++.++++|++|+++++|++|..+ ++++.+|.+.+..+++...+.||.||+++.++.
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~ 294 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS 294 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence 4469999999999999999999999999988 677888887652122223689999999998743
No 88
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.99 E-value=1e-08 Score=117.92 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHHH-CCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 448 DDARMCLAIALTATR-HGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 448 dp~~~v~al~~~A~~-~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
.+..++..|.+.+++ .|+++++++.|++|+.+ +++|.||.+.+. ++...+.|+.||+|||.|+..
T Consensus 126 ~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 126 TGREVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNR--ETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEEC--CcEEEEEcCEEEECCCcccCC
Confidence 456788899888887 69999999999999887 688999987763 333468999999999999975
No 89
>KOG0028|consensus
Probab=98.99 E-value=2.8e-09 Score=101.68 Aligned_cols=105 Identities=25% Similarity=0.484 Sum_probs=93.4
Q ss_pred CCCCCCCHHHHHHHHHHhccc-----hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHH
Q psy8270 581 THHPKPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDI 655 (737)
Q Consensus 581 ~~d~~pteeeI~~Lls~~D~d-----~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL 655 (737)
..++.+..+++..++...+.+ .|++|+ .+|..++... +..++++.+|+.+|.|++|.|+..+|
T Consensus 61 alGFE~~k~ei~kll~d~dk~~~g~i~fe~f~-~~mt~k~~e~-----------dt~eEi~~afrl~D~D~~Gkis~~~l 128 (172)
T KOG0028|consen 61 ALGFEPKKEEILKLLADVDKEGSGKITFEDFR-RVMTVKLGER-----------DTKEEIKKAFRLFDDDKTGKISQRNL 128 (172)
T ss_pred HcCCCcchHHHHHHHHhhhhccCceechHHHH-HHHHHHHhcc-----------CcHHHHHHHHHcccccCCCCcCHHHH
Confidence 367889999999999999986 899999 5666555432 24577899999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 656 RRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 656 ~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
+.+.+.||.++++++++.++.++|.+++|.|+-+||..+|++
T Consensus 129 krvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 129 KRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 999999999999999999999999999999999999999874
No 90
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.99 E-value=1.3e-09 Score=96.26 Aligned_cols=69 Identities=14% Similarity=0.377 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhhcC-CCCceeeHHHHHHHHHH-hCCCCCH-HHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 630 EEINQYIKRFQIMDK-ERKGYVSINDIRRGLKN-FGETISG-EELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 630 ee~~~l~~~F~~fD~-d~~G~Is~~eL~~~L~~-lg~~~s~-~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
..+..|..+|+.||+ +++|+|+.+||+.++++ +|..+++ ++++++|+.+|.|+||+|+|+||+.++..+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 456789999999999 99999999999999999 9988888 999999999999999999999999999765
No 91
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.98 E-value=1.5e-08 Score=118.63 Aligned_cols=67 Identities=27% Similarity=0.313 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
+..++..|...+++.|+++++++.|++|+.+ +|+|.||.+.+..+++...+.|+.||+|||.++...
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~ 194 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIY 194 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCC
Confidence 4567888888888899999999999999987 789999987653345545789999999999988543
No 92
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.98 E-value=3.3e-08 Score=111.97 Aligned_cols=61 Identities=26% Similarity=0.297 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
..+.+++++.+...|++++.+++|++|..+++|++++|++.+ |+ ++.|+.||.....|...
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---Ge--~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---GE--VAKCKLVICDPSYFPDK 292 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---Cc--EEECCEEEECccccccc
Confidence 479999999999999999999999999887457888888654 43 58999999877776543
No 93
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.98 E-value=1.4e-08 Score=113.37 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=59.4
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCC-hhhhhhhcC
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF-TDSIRRMDD 521 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaw-s~~L~~~lG 521 (737)
+-+.+++.+|.+.++++|++++.+++|+++..+ ++++++|.... ++...+.||+||+|||+| +..|.+.++
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~---g~~~~l~AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRN---HRDIPLRADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecC---CccceEECCEEEEccCCCcCHHHHhhcC
Confidence 456799999999999999999999999999988 78888876533 322469999999999999 999977654
No 94
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.7e-08 Score=119.40 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHC--------C-----cEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 449 DARMCLAIALTATRH--------G-----ATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~~--------G-----ve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
...++..|...+.+. | +++++++.|++|+.+ +|+|.||.+.+..+++...|.|+.||+|||.+...
T Consensus 137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence 456888888877776 7 999999999999987 78999998755435665679999999999997755
Q ss_pred h
Q psy8270 516 I 516 (737)
Q Consensus 516 L 516 (737)
.
T Consensus 216 ~ 216 (626)
T PRK07803 216 F 216 (626)
T ss_pred C
Confidence 3
No 95
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.97 E-value=2e-08 Score=117.23 Aligned_cols=62 Identities=26% Similarity=0.462 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcC-EEEecCCCChh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAK-SVINATGPFTD 514 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad-~VV~a~Gaws~ 514 (737)
..+...|.+.+++.|++++++++|++|+.+ +++|+||.+.. +++...|.|+ .||+|||.+..
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAE--SGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEe--CCcEEEEEeceeEEEccCCcCc
Confidence 456777778888899999999999999987 78999998764 4555679996 69999998876
No 96
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=2e-08 Score=116.97 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
+..++..|...+.+.|+++++++.|++|..+++++|.||.+.+..+++...|.|+.||+|||.++.
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 456888888888889999999999999998734459998876522455557999999999999875
No 97
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.95 E-value=1.8e-07 Score=98.74 Aligned_cols=122 Identities=16% Similarity=0.059 Sum_probs=73.8
Q ss_pred eEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 446 QQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 446 ~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
.++...+...|.+.+.+.|++++++++|+++..+ ++++ .+.+.+ +..+++|+.||.|+|.++. +.+.++....
T Consensus 87 ~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~-~~~~~~----~~~~~~a~~vv~a~G~~s~-~~~~~~~~~~ 159 (295)
T TIGR02032 87 VIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRV-VVIVRG----GEGTVTAKIVIGADGSRSI-VAKKLGLRKE 159 (295)
T ss_pred EEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEE-EEEEcC----ccEEEEeCEEEECCCcchH-HHHhcCCCCC
Confidence 3566788888999999999999999999999877 4443 233322 2236999999999999984 6666654321
Q ss_pred ccccccceEEEEecCCC--CCCC-ceeeecC-CCCCcEEEEeecCC-eEeeecCC
Q psy8270 526 KICVPSSGVHIVLPGYY--SPDQ-MGLLDPS-TSDGRVIFFLPWLK-HTIAGTTD 575 (737)
Q Consensus 526 ~~i~p~KG~~lvv~~~~--~~~~-~~i~~~~-~~Dgr~iy~~P~~g-~~ivG~Td 575 (737)
. .....+....++.+. .... ..+++.. ..++.+.+++|..+ ...+|.+.
T Consensus 160 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~ 213 (295)
T TIGR02032 160 P-RELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGS 213 (295)
T ss_pred C-cceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeee
Confidence 0 111123322333221 1112 2222211 12356778899864 46676554
No 98
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.95 E-value=2.3e-08 Score=117.12 Aligned_cols=66 Identities=23% Similarity=0.175 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 449 DARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
...++..|...+.+. |+++++++.|++|+.+ +|+|.||...+..+++...+.|+.||+|||.++..
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 467888888877664 8999999999999987 78999998765335655679999999999998864
No 99
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.94 E-value=2.4e-08 Score=117.13 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 449 DARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
...++.+|...+.+. |+++++++.|++|+.+ +|+|.||.+.+..+++...+.|+.||+|||.++..
T Consensus 132 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 132 GFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 456777888777665 7999999999999987 78999988754334555579999999999998864
No 100
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.94 E-value=1.5e-08 Score=119.52 Aligned_cols=68 Identities=28% Similarity=0.244 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHHCC-cEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 448 DDARMCLAIALTATRHG-ATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 448 dp~~~v~al~~~A~~~G-ve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
++..+...|...++++| +++++++.|++|..+ +++|.||.+.+..+++...+.|+.||+|||+|+...
T Consensus 130 ~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~ 198 (608)
T PRK06854 130 NGESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIY 198 (608)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCchhhcc
Confidence 45677788888888876 999999999999887 689999876443245545799999999999998644
No 101
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.94 E-value=1.2e-08 Score=118.05 Aligned_cols=65 Identities=25% Similarity=0.266 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 448 DDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 448 dp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
.+..++.+|...+++. |+++++++.|++|..+ +|+|+||.+.+ +++...+.|+.||+|||.++..
T Consensus 134 ~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 134 AGAAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAAT--AGGPVVLPARAVVLATGGIGGL 199 (513)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEe--CCeEEEEECCEEEEcCCCCcCC
Confidence 4567888998888765 8999999999999887 78999998765 3333468999999999998753
No 102
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.93 E-value=2.8e-08 Score=110.37 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=51.3
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
+....+...|.+.+.+.|+..+++++|+++..+ ++.+ .|++.+ ++ ++.||.||.|.|.++. +.+.++.+..
T Consensus 108 i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~~-~v~~~~---g~--~~~a~~vI~AdG~~S~-vr~~~g~~~~ 178 (388)
T PRK07494 108 IPNWLLNRALEARVAELPNITRFGDEAESVRPR-EDEV-TVTLAD---GT--TLSARLVVGADGRNSP-VREAAGIGVR 178 (388)
T ss_pred eEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEc-CCeE-EEEECC---CC--EEEEeEEEEecCCCch-hHHhcCCCce
Confidence 445678888888888876544889999999876 4444 355432 32 5999999999999985 6566666543
No 103
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.93 E-value=2e-08 Score=105.76 Aligned_cols=65 Identities=26% Similarity=0.345 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCC--cEEEEEEeecc---cC---eeEEEEcCEEEecCCCCh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKG--KVRGAHLRDEL---TG---KEWDLKAKSVINATGPFT 513 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~--~V~gV~~~~~~---tg---~~~~I~Ad~VV~a~Gaws 513 (737)
+...++..|+..+.++|+++++++.|+++..+ ++ +|.||.+.... .+ +...++|+.||.|||..+
T Consensus 98 ~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~-~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 98 DSAEFISTLASKALQAGAKIFNGTSVEDLITR-DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred eHHHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 55688889999999999999999999999886 44 68898874210 01 234799999999999765
No 104
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.93 E-value=2.9e-08 Score=115.40 Aligned_cols=68 Identities=24% Similarity=0.240 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHC-CcEEecCceEEEEEEcC-----CCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 449 DARMCLAIALTATRH-GATVANHVRVTNLIKDD-----KGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~-----~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
...+...|.+.+++. |+++++++.|++++.++ +++|.||.+.+..+++...|.|+.||+|||.++...
T Consensus 137 G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~ 210 (536)
T PRK09077 137 GKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVY 210 (536)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCC
Confidence 456777888777665 89999999999998762 388999998764456656799999999999988643
No 105
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.93 E-value=3.9e-09 Score=118.29 Aligned_cols=60 Identities=23% Similarity=0.270 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
.+..++.+|...++++|++++++++|.+|+.+ ++++..|...+ ...+.||.||+|||.-|
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~-----~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKN-----GGEYEADAVILATGGKS 166 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETT-----TEEEEESEEEE----SS
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccC-----cccccCCEEEEecCCCC
Confidence 46789999999999999999999999999987 67777787521 23699999999999654
No 106
>PLN02697 lycopene epsilon cyclase
Probab=98.93 E-value=5.3e-08 Score=112.52 Aligned_cols=122 Identities=11% Similarity=0.139 Sum_probs=78.9
Q ss_pred eeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 445 GQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 445 g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
+.++...+...|+..+.+.|+++ .+++|+++..+ ++.+..+++.+ + ..+.|+.||.|+|+|+..+........
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~d---G--~~i~A~lVI~AdG~~S~rl~~~~~~~~ 259 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACED---G--RVIPCRLATVASGAASGRLLQYEVGGP 259 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcC---C--cEEECCEEEECCCcChhhhhccccCCC
Confidence 46788889999999999999998 57899999876 45544344332 3 259999999999999966543211111
Q ss_pred cccccccceEEEEecCCCCCCCceeeec-C-----------CCCCcEEEEeecC-CeEee-ec
Q psy8270 525 QKICVPSSGVHIVLPGYYSPDQMGLLDP-S-----------TSDGRVIFFLPWL-KHTIA-GT 573 (737)
Q Consensus 525 p~~i~p~KG~~lvv~~~~~~~~~~i~~~-~-----------~~Dgr~iy~~P~~-g~~iv-G~ 573 (737)
....+..+|+.+.++.....+...+++- . ....++.|+.|.+ +...| ++
T Consensus 260 ~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T 322 (529)
T PLN02697 260 RVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEET 322 (529)
T ss_pred CcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEe
Confidence 1125667888888865322222223321 1 0123688999996 46667 54
No 107
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.92 E-value=1.8e-08 Score=117.50 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHC-CcEEecCceEEEEEEcC-CCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 449 DARMCLAIALTATRH-GATVANHVRVTNLIKDD-KGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~-~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
+..++..|...+.+. |+++++++.|++|+.++ +|+|.||.+.+ +++...+.|+.||+|||.++..
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~~ 199 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY--QGQITWLRAGAVILATGGGGQV 199 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE--CCeEEEEEcCEEEEcCCCCccc
Confidence 456888888887654 99999999999998863 38899998765 4555568999999999997653
No 108
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.91 E-value=3.5e-08 Score=115.11 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=41.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecC--CCCCCCcCcccce
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDD--FASGTSSRSTKLI 88 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~--~~~g~s~~~~~~~ 88 (737)
.++||||||+|++|+++|+.+++.|.+|+||||.+ ..+|+|..++|.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~ 52 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGL 52 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCce
Confidence 57999999999999999999999999999999988 5677775565543
No 109
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.90 E-value=2.1e-08 Score=113.47 Aligned_cols=70 Identities=26% Similarity=0.279 Sum_probs=54.1
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
++-..+-..|.+.|++.|++++++++|++++.+ ++++.+++. +++ .+.|+.||.|+|+++ .+.+.+|...
T Consensus 105 v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~----~g~--~i~A~~VI~A~G~~s-~l~~~lgl~~ 174 (428)
T PRK10157 105 VLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEA----DGD--VIEAKTVILADGVNS-ILAEKLGMAK 174 (428)
T ss_pred eEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEc----CCc--EEECCEEEEEeCCCH-HHHHHcCCCC
Confidence 345567788888999999999999999999877 677666542 232 589999999999976 5666666653
No 110
>KOG0037|consensus
Probab=98.90 E-value=1e-08 Score=102.81 Aligned_cols=103 Identities=19% Similarity=0.306 Sum_probs=94.2
Q ss_pred HHHHHHHhhhcCCCCceeeHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh-------------
Q psy8270 633 NQYIKRFQIMDKERKGYVSINDIRRGLKNF-GETISGEELHEILREIDSNMNGQVELDEYLQMMSAI------------- 698 (737)
Q Consensus 633 ~~l~~~F~~fD~d~~G~Is~~eL~~~L~~l-g~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~------------- 698 (737)
..+...|+..|+|+.|+|+.+||+++|... ...++.+.++.|+..+|.+.+|+|+|+||..++..+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D 136 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRD 136 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 568999999999999999999999999965 468889999999999999999999999999999877
Q ss_pred cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCC
Q psy8270 699 KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGG 735 (737)
Q Consensus 699 ~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngD 735 (737)
++|.|+..||+++|+.+|..++++-.+.+++ .|+.++
T Consensus 137 ~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~ 174 (221)
T KOG0037|consen 137 RSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGG 174 (221)
T ss_pred CCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccC
Confidence 4899999999999999999999999999999 876543
No 111
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.90 E-value=1.8e-08 Score=102.00 Aligned_cols=67 Identities=25% Similarity=0.309 Sum_probs=48.8
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCe------eEEEEcCEEEecCCCCh
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGK------EWDLKAKSVINATGPFT 513 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~------~~~I~Ad~VV~a~Gaws 513 (737)
.|+..++..|+..+.+.|++++..+.|+++...++++|.||.+.-..-.. -..++|+.||-|||--+
T Consensus 93 ~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 93 ADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp S-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred EcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 48889999999999899999999999999987734899999874211000 13699999999998544
No 112
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.90 E-value=6.8e-08 Score=107.62 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=61.5
Q ss_pred eEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 446 QQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 446 ~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
.++...+...|.+.+.+.|++++++++|+++..+ ++.+ .|++.+ ++ .+.||.||.|.|+++. +.+.++...+
T Consensus 107 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~---g~--~~~ad~vI~AdG~~S~-vr~~~g~~~~ 178 (403)
T PRK07333 107 MVENRVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSD---GS--VLEARLLVAADGARSK-LRELAGIKTV 178 (403)
T ss_pred EeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECC---CC--EEEeCEEEEcCCCChH-HHHHcCCCcc
Confidence 3567789999999999999999999999999876 4443 355433 32 5899999999999986 6677776543
Q ss_pred ccccccceEEEEec
Q psy8270 526 KICVPSSGVHIVLP 539 (737)
Q Consensus 526 ~~i~p~KG~~lvv~ 539 (737)
....+..+....++
T Consensus 179 ~~~~~~~~~~~~~~ 192 (403)
T PRK07333 179 GWDYGQSGIVCTVE 192 (403)
T ss_pred cccCCCEEEEEEEE
Confidence 22234445444443
No 113
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.89 E-value=1.9e-08 Score=126.36 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=43.9
Q ss_pred hccCCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccc
Q psy8270 37 LQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKL 87 (737)
Q Consensus 37 ~~~~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~ 87 (737)
+.....+||||||||.+|+++|+.+++.|.+|+||||....+|+|..++|.
T Consensus 404 i~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~gg 454 (1167)
T PTZ00306 404 IAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSG 454 (1167)
T ss_pred cccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccc
Confidence 345568999999999999999999999999999999998888877655543
No 114
>PRK08275 putative oxidoreductase; Provisional
Probab=98.89 E-value=5.6e-08 Score=113.53 Aligned_cols=67 Identities=25% Similarity=0.258 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
...++..|...+++.|+++++++.|++|+.+++|+|.||.+.+..+++...+.|+.||+|||.++..
T Consensus 136 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 136 GHDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred hHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 3567888888889999999999999999886457899998755334555568999999999998753
No 115
>PRK07208 hypothetical protein; Provisional
Probab=98.88 E-value=1.1e-07 Score=108.83 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=50.6
Q ss_pred EEEecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 439 AIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 439 ~~~~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
.+.++.+.. ..++.+|++.+.+.|++|+++++|++|..++++.+.+++..+. +|+...+.||.||.|+.++.
T Consensus 209 ~~~~p~gG~--~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~-~g~~~~~~ad~VI~a~p~~~ 280 (479)
T PRK07208 209 EFRYPKLGP--GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDT-DGTEETVTADQVISSMPLRE 280 (479)
T ss_pred EEeCCCCCc--chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcC-CCCEEEEEcCEEEECCCHHH
Confidence 344444443 3688899999999999999999999999883333445544321 24334689999999988753
No 116
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=3.8e-08 Score=115.48 Aligned_cols=66 Identities=24% Similarity=0.163 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHH-CCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 449 DARMCLAIALTATR-HGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~-~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
+..++..|.+.+.+ .|+++++++.|++|+.+ +|+|.||.+.+..+++...+.|+.||+|||.++..
T Consensus 136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence 45688888887766 69999999999999987 68999998765334554578999999999998653
No 117
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.87 E-value=1.4e-07 Score=104.67 Aligned_cols=121 Identities=15% Similarity=0.091 Sum_probs=75.4
Q ss_pred eeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhh-hcCCC
Q psy8270 445 GQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRR-MDDGQ 523 (737)
Q Consensus 445 g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~-~lG~~ 523 (737)
+.++...+...+...+.+.|++++ .++|+.+..+ ++..+.|++.+ + .++.|+.||.|+|.++ .+.. ..+..
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~---g--~~~~a~~VI~A~G~~s-~~~~~~~~~~ 151 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAG---G--QRIQARLVIDARGFGP-LVQYVRFPLN 151 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCC---C--CEEEeCEEEECCCCch-hcccccCCCC
Confidence 457888999999999999999986 6689888766 44555566533 3 2699999999999998 2211 11222
Q ss_pred ccccccccceEEEEecCCCCCCCceeee-cCCC--------CCc--EEEEeecC-CeEeeecCC
Q psy8270 524 VQKICVPSSGVHIVLPGYYSPDQMGLLD-PSTS--------DGR--VIFFLPWL-KHTIAGTTD 575 (737)
Q Consensus 524 lp~~i~p~KG~~lvv~~~~~~~~~~i~~-~~~~--------Dgr--~iy~~P~~-g~~ivG~Td 575 (737)
.. .+..+|..+.++.+.......+++ .... ... +.|+.|.+ +...++.+.
T Consensus 152 ~~--~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~ 213 (388)
T TIGR01790 152 VG--FQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETS 213 (388)
T ss_pred ce--EEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecc
Confidence 22 344567777776433222222222 1111 123 77889986 466677554
No 118
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.87 E-value=9.8e-09 Score=90.69 Aligned_cols=69 Identities=14% Similarity=0.390 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhc-CCCCc-eeeHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 630 EEINQYIKRFQIMD-KERKG-YVSINDIRRGLKN-----FGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 630 ee~~~l~~~F~~fD-~d~~G-~Is~~eL~~~L~~-----lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
.-+..++++|+.|| ++++| +|+.+||+.+|+. +|...++++++++++.+|.|++|+|+|+||+.++..+
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 44678999999998 79999 6999999999999 8999999999999999999999999999999988754
No 119
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.87 E-value=4e-08 Score=99.11 Aligned_cols=69 Identities=28% Similarity=0.339 Sum_probs=52.5
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCe------eEEEEcCEEEecCCCChhh
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGK------EWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~------~~~I~Ad~VV~a~Gaws~~ 515 (737)
.|+..++..|+..+.+.|++|++.+.|++++..++.+|.||.+.-..... -..++|+.||-|||--+.-
T Consensus 106 ~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v 180 (262)
T COG1635 106 ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEV 180 (262)
T ss_pred ecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHH
Confidence 48889999999999999999999999999988733389998763110000 1358999999999965543
No 120
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.86 E-value=9.3e-09 Score=85.13 Aligned_cols=62 Identities=37% Similarity=0.759 Sum_probs=55.3
Q ss_pred HHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHH----HHHHHHhCCCCCCceeHHHHHHHH
Q psy8270 634 QYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEEL----HEILREIDSNMNGQVELDEYLQMM 695 (737)
Q Consensus 634 ~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev----~~i~~~~D~d~dG~I~feEF~~ll 695 (737)
+|+++|+.||.|++|+|+.+||+.+++.++...+++++ +.+|+.+|.++||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999999977766555 445999999999999999999875
No 121
>PRK08244 hypothetical protein; Provisional
Probab=98.86 E-value=5.5e-07 Score=103.60 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
..+-..|.+.+++.|++++++++|+++..+ ++.+ .|++.+. ++ ..+++|+.||.|.|++|. +.+.+|+..
T Consensus 100 ~~le~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~~-~g-~~~i~a~~vVgADG~~S~-vR~~lgi~~ 169 (493)
T PRK08244 100 AETEKVLEEHARSLGVEIFRGAEVLAVRQD-GDGV-EVVVRGP-DG-LRTLTSSYVVGADGAGSI-VRKQAGIAF 169 (493)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCEEEEEEEc-CCeE-EEEEEeC-Cc-cEEEEeCEEEECCCCChH-HHHhcCCCc
Confidence 455666777778889999999999999877 4444 3555442 23 236999999999999984 556666654
No 122
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.86 E-value=1e-07 Score=106.64 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=53.5
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
+....+...|.+.+.+.|++++++++|++++.+ ++.+ .|++.+ |+ ++.|+.||.|.|+|| .+.+.++...+
T Consensus 109 i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~---g~--~~~a~~vVgAdG~~S-~vR~~lg~~~~ 179 (405)
T PRK05714 109 VENRVVQDALLERLHDSDIGLLANARLEQMRRS-GDDW-LLTLAD---GR--QLRAPLVVAADGANS-AVRRLAGCATR 179 (405)
T ss_pred EEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeE-EEEECC---CC--EEEeCEEEEecCCCc-hhHHhcCCCcc
Confidence 444567778888888889999999999999876 4443 355433 32 589999999999999 56666776543
No 123
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.85 E-value=1.3e-08 Score=91.06 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 625 INLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 625 ~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
+.++++++.+++.+|+.||.+++|.|+.++++.+++.++ +++++++++++.+|.+++|.|+|+||+.++..+
T Consensus 2 ~~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 2 WAISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 467889999999999999999999999999999999976 788999999999999999999999999988654
No 124
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.85 E-value=4.2e-08 Score=115.48 Aligned_cols=67 Identities=24% Similarity=0.253 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHH----CCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 449 DARMCLAIALTATR----HGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~----~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
...++..|...+++ .|+++++++.|++|+.+++|+|.||.+.+..+++...+.|+.||+|||.++..
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 34565566555543 48999999999999986467999999876334555578999999999998754
No 125
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.85 E-value=1.1e-07 Score=101.68 Aligned_cols=68 Identities=28% Similarity=0.278 Sum_probs=50.7
Q ss_pred HHHHHHHHC-CcEEecCceEEEEEEc-CCCcEEEEEEeecccC-eeEEEEcCEEEecCCC-ChhhhhhhcCC
Q psy8270 455 AIALTATRH-GATVANHVRVTNLIKD-DKGKVRGAHLRDELTG-KEWDLKAKSVINATGP-FTDSIRRMDDG 522 (737)
Q Consensus 455 al~~~A~~~-Gve~~~nt~V~~L~~d-~~~~V~gV~~~~~~tg-~~~~I~Ad~VV~a~Ga-ws~~L~~~lG~ 522 (737)
+++..+.+. +.+|++++.|++|..+ ++++++||++.+..+. ....+.++.||+|+|+ .++.|+...|+
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 334444445 8999999999999663 3688999999886443 2346778999999997 67888877776
No 126
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.84 E-value=1.9e-07 Score=107.72 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEc-CC--CcEEEEEEeecccCeeEE-EEcCEEEecCCCChhhh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKD-DK--GKVRGAHLRDELTGKEWD-LKAKSVINATGPFTDSI 516 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d-~~--~~V~gV~~~~~~tg~~~~-I~Ad~VV~a~Gaws~~L 516 (737)
..++.-|.+.++++||+|+++++|++|..+ ++ ++|+||.+.....++.+. ..+|.||+|+|.++..-
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcccc
Confidence 478899999999999999999999999884 23 679999986522223333 34689999999877553
No 127
>PRK06184 hypothetical protein; Provisional
Probab=98.84 E-value=3.9e-07 Score=105.09 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
..+-..|.+.+.+.|++++++++|+++..+ ++.++ +++.+. +...+++|+.||.|.|++|. +.+.+++...
T Consensus 109 ~~le~~L~~~l~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~~--~~~~~i~a~~vVgADG~~S~-vR~~lgi~~~ 179 (502)
T PRK06184 109 WRTERILRERLAELGHRVEFGCELVGFEQD-ADGVT-ARVAGP--AGEETVRARYLVGADGGRSF-VRKALGIGFP 179 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEEc-CCcEE-EEEEeC--CCeEEEEeCEEEECCCCchH-HHHhCCCCcc
Confidence 345567777788889999999999999877 45443 444331 22346999999999999995 5667776543
No 128
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.83 E-value=2.7e-07 Score=102.87 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=52.9
Q ss_pred eEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeec---ccCeeEEEEcCEEEecCCCChhhhhhhcCC
Q psy8270 446 QQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDE---LTGKEWDLKAKSVINATGPFTDSIRRMDDG 522 (737)
Q Consensus 446 ~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~---~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~ 522 (737)
.++-..+-..|...|.+.|++++.. .|+++..+ ++. +.|++.+. .+++..++.|+.||.|.|.++. +.+.++.
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~-~~~-~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~-v~r~lg~ 163 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERD-RDG-VTLTYRTPKKGAGGEKGSVEADVVIGADGANSP-VAKELGL 163 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEc-CCe-EEEEEEeccccCCCcceEEEeCEEEECCCCCcH-HHHHcCC
Confidence 4566678888888899999999754 69999776 444 34665531 1233347999999999999884 5566665
Q ss_pred C
Q psy8270 523 Q 523 (737)
Q Consensus 523 ~ 523 (737)
+
T Consensus 164 ~ 164 (388)
T TIGR02023 164 P 164 (388)
T ss_pred C
Confidence 4
No 129
>PRK10015 oxidoreductase; Provisional
Probab=98.83 E-value=5.7e-08 Score=109.94 Aligned_cols=67 Identities=28% Similarity=0.251 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCC
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDG 522 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~ 522 (737)
.-..+-..|.+.|++.|++++.+++|+.+..+ ++++.+|.. +. ..+.|+.||.|+|+++ .+.+.++.
T Consensus 106 ~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-----~~-~~i~A~~VI~AdG~~s-~v~~~lg~ 172 (429)
T PRK10015 106 LRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-----GD-DILEANVVILADGVNS-MLGRSLGM 172 (429)
T ss_pred ehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-----CC-eEEECCEEEEccCcch-hhhcccCC
Confidence 44566677888899999999999999999877 677766652 22 2699999999999976 45555655
No 130
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.81 E-value=2.3e-07 Score=100.19 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=53.8
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCC
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQ 523 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~ 523 (737)
++-..+...|...+++.|++++++++|+++..+ .+.+. +.+.+..+++..++.||.||-|.|++|.. .+.++..
T Consensus 108 ~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d-~~~~~-~~~~~~~~g~~~~i~adlvVgADG~~S~v-R~~l~~~ 181 (356)
T PF01494_consen 108 IDRPELDRALREEAEERGVDIRFGTRVVSIEQD-DDGVT-VVVRDGEDGEEETIEADLVVGADGAHSKV-RKQLGID 181 (356)
T ss_dssp EEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEE-TTEEE-EEEEETCTCEEEEEEESEEEE-SGTT-HH-HHHTTGG
T ss_pred hhHHHHHHhhhhhhhhhhhhheeeeeccccccc-ccccc-cccccccCCceeEEEEeeeecccCcccch-hhhcccc
Confidence 344567888889999999999999999999887 55544 33444435666679999999999999944 3455554
No 131
>PRK06126 hypothetical protein; Provisional
Probab=98.79 E-value=1.1e-06 Score=102.53 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 450 ARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 450 ~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
..+...|.+.+.+. |++++++++|+++..+ ++.+. +++.+..+++..++.||.||.|.|++|. +.+.+|+..
T Consensus 126 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~-VR~~lgi~~ 198 (545)
T PRK06126 126 KYLEPILLEHAAAQPGVTLRYGHRLTDFEQD-ADGVT-ATVEDLDGGESLTIRADYLVGCDGARSA-VRRSLGISY 198 (545)
T ss_pred HHHHHHHHHHHHhCCCceEEeccEEEEEEEC-CCeEE-EEEEECCCCcEEEEEEEEEEecCCcchH-HHHhcCCcc
Confidence 34556677777654 8999999999999887 55554 5555533565567999999999999995 667777653
No 132
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.78 E-value=2.4e-07 Score=108.94 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHCCcEEecCceEEEEEEcCC--CcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 451 RMCLAIALTATRHGATVANHVRVTNLIKDDK--GKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 451 ~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~--~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
.+...+...+.+.++++++++.|++|..+++ |+|.||.+.+..+++...+.|+.||+|||.|+...
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly 194 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVY 194 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccccc
Confidence 3444444455667789999999999998633 79999987654466666799999999999998644
No 133
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.77 E-value=2.1e-07 Score=102.67 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=53.2
Q ss_pred EChHHHHHHHHHHHHHCC-cEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 447 QDDARMCLAIALTATRHG-ATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~G-ve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
++-..+...|.+.+.+.| ++++.+++|+++..+ ++.+ .|++.+ |+ .+.||.||.|.|.++. +.+.++.+.
T Consensus 103 i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~---g~--~~~~~~vi~adG~~S~-vr~~l~~~~ 173 (385)
T TIGR01988 103 VENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDD---GQ--QLRARLLVGADGANSK-VRQLAGIPT 173 (385)
T ss_pred EEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECC---CC--EEEeeEEEEeCCCCCH-HHHHcCCCc
Confidence 455678888999998888 999999999999876 5544 354433 43 5899999999999985 556666543
No 134
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.77 E-value=1.3e-07 Score=103.24 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
+..++++|...+++.||+++++++|.++..+ + ..-.+.+.+ ++ .|.|+.+|+|+|.-|
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~---g~--~i~~d~lilAtGG~S 167 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSS---GE--TVKCDSLILATGGKS 167 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCC---CC--EEEccEEEEecCCcC
Confidence 5579999999999999999999999999987 3 223344322 33 699999999999433
No 135
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.77 E-value=5.8e-07 Score=100.64 Aligned_cols=69 Identities=19% Similarity=0.143 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCC
Q psy8270 450 ARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQ 523 (737)
Q Consensus 450 ~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~ 523 (737)
..+...|...+.+. |++++++++|++++.+ ++.+ .|++.+ ++...++.||.||.|.|.+| .+.+.++..
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~-~~~~-~v~~~~--~~~~~~i~adlvIgADG~~S-~vR~~~~~~ 190 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQ-QDAA-TVTLEI--EGKQQTLQSKLVVAADGARS-PIRQAAGIK 190 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCee-EEEEcc--CCcceEEeeeEEEEeCCCCc-hhHHHhCCC
Confidence 35777777777665 7999999999999876 4443 466654 23333699999999999999 444566654
No 136
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.75 E-value=5e-08 Score=113.35 Aligned_cols=66 Identities=29% Similarity=0.341 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHHHH-CCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 448 DDARMCLAIALTATR-HGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 448 dp~~~v~al~~~A~~-~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
-...++..|.+.+++ .+.+++.+..|+++..++++.|.||...+..+++...++++.||+|||+..
T Consensus 136 tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 136 TGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred CcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 356788888888877 677999999999999874555999988887788888889999999999877
No 137
>PRK06847 hypothetical protein; Provisional
Probab=98.74 E-value=1.3e-06 Score=96.37 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=51.1
Q ss_pred eEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhh
Q psy8270 446 QQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRM 519 (737)
Q Consensus 446 ~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~ 519 (737)
.++...+...|...+.+.|++++++++|+++..+ ++. ..|++.+ |+ ++.||.||.|+|.|+......
T Consensus 103 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~---g~--~~~ad~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 103 GIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDG-VTVTFSD---GT--TGRYDLVVGADGLYSKVRSLV 169 (375)
T ss_pred cCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCE-EEEEEcC---CC--EEEcCEEEECcCCCcchhhHh
Confidence 3556678888988888899999999999999876 444 3454433 33 589999999999998665333
No 138
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.74 E-value=1.4e-07 Score=109.62 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=51.0
Q ss_pred HHHHHH-HCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCC-ChhhhhhhcCCC
Q psy8270 456 IALTAT-RHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGP-FTDSIRRMDDGQ 523 (737)
Q Consensus 456 l~~~A~-~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Ga-ws~~L~~~lG~~ 523 (737)
++..++ +.+++|+.++.|++|..+ +++++||++.+. +++...+.++.||+|+|+ +++.|+...|+-
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~-~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKG-GRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeC-CcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 344444 567999999999999998 789999998762 122323578999999998 999998877763
No 139
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.73 E-value=4.9e-08 Score=86.26 Aligned_cols=70 Identities=19% Similarity=0.459 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhhcC-CC-CceeeHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 629 KEEINQYIKRFQIMDK-ER-KGYVSINDIRRGLK---NFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 629 ~ee~~~l~~~F~~fD~-d~-~G~Is~~eL~~~L~---~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
++.+..+-.+|+.||. ++ +|+|+.+||+.+++ .+|.++++++++++|+.+|.+++|+|+|+||+.++..+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4566789999999998 67 89999999999997 37999999999999999999999999999999998754
No 140
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.72 E-value=2.5e-07 Score=102.40 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=54.1
Q ss_pred EChHHHHHHHHHHHHH-CCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 447 QDDARMCLAIALTATR-HGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~-~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
++...+...|.+.+.+ .|++++++++|+++..+ ++.+ .|++.+ ++ ++.||.||.|.|.|+. +.+.++.+.+
T Consensus 102 i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~-~v~~~~---g~--~~~ad~vV~AdG~~S~-vr~~l~~~~~ 173 (382)
T TIGR01984 102 VELADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYV-RVTLDN---GQ--QLRAKLLIAADGANSK-VRELLSIPTE 173 (382)
T ss_pred EEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeE-EEEECC---CC--EEEeeEEEEecCCChH-HHHHcCCCCc
Confidence 4667899999998888 49999999999999876 4443 344432 32 5899999999999985 6677776543
No 141
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.72 E-value=5.4e-08 Score=86.84 Aligned_cols=70 Identities=19% Similarity=0.405 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhhc-CCCCc-eeeHHHHHHHHHH-h----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 629 KEEINQYIKRFQIMD-KERKG-YVSINDIRRGLKN-F----GETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 629 ~ee~~~l~~~F~~fD-~d~~G-~Is~~eL~~~L~~-l----g~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
+.-+..+.++|+.|| +|++| .|+.+||+.+++. + ....++.+++++++++|.|+||.|+|+||+.++..+
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 345678999999999 78998 5999999999977 3 344578899999999999999999999999999765
No 142
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.71 E-value=4.1e-07 Score=101.10 Aligned_cols=85 Identities=24% Similarity=0.276 Sum_probs=58.9
Q ss_pred EChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 447 QDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
++...+...|...+.+. |++++++++|+++..+ ++. +.|++.+ ++ ++.|+.||.|.|.+|. +.+.++....
T Consensus 109 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~---g~--~~~a~~vI~AdG~~S~-vR~~~~~~~~ 180 (391)
T PRK08020 109 VENRVLQLALWQALEAHPNVTLRCPASLQALQRD-DDG-WELTLAD---GE--EIQAKLVIGADGANSQ-VRQMAGIGVH 180 (391)
T ss_pred EEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEc-CCe-EEEEECC---CC--EEEeCEEEEeCCCCch-hHHHcCCCcc
Confidence 45566777888877776 9999999999999876 443 3455433 32 5899999999999995 6666666543
Q ss_pred ccccccceEEEEec
Q psy8270 526 KICVPSSGVHIVLP 539 (737)
Q Consensus 526 ~~i~p~KG~~lvv~ 539 (737)
....+..+..+.+.
T Consensus 181 ~~~y~~~~~~~~~~ 194 (391)
T PRK08020 181 GWQYRQSCMLISVK 194 (391)
T ss_pred ccCCCceEEEEEEE
Confidence 22344455555554
No 143
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.71 E-value=1.2e-06 Score=99.95 Aligned_cols=76 Identities=18% Similarity=0.106 Sum_probs=51.0
Q ss_pred eEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcC-CCcEEEEEEeec----ccCeeEEEEcCEEEecCCCChhhhhhhc
Q psy8270 446 QQDDARMCLAIALTATRHGATVANHVRVTNLIKDD-KGKVRGAHLRDE----LTGKEWDLKAKSVINATGPFTDSIRRMD 520 (737)
Q Consensus 446 ~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~-~~~V~gV~~~~~----~tg~~~~I~Ad~VV~a~Gaws~~L~~~l 520 (737)
.++-..+-..|+..|.+.|++++.+ .++++..++ ++..+.|++.+. .+++..++.|+.||-|.|+++ .+.+.+
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr~l 205 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAKDI 205 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHHHh
Confidence 3566677778888899999999865 587876531 223345655431 013334799999999999988 455666
Q ss_pred CCC
Q psy8270 521 DGQ 523 (737)
Q Consensus 521 G~~ 523 (737)
+..
T Consensus 206 g~~ 208 (450)
T PLN00093 206 DAG 208 (450)
T ss_pred CCC
Confidence 553
No 144
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.70 E-value=2.4e-07 Score=105.22 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
+..++.+|.+.+.++|++|+++++|++|..+++|++++|++.+..+++...+.||.||+|+.+..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 45788899888888999999999999998654677888988652111112589999999997743
No 145
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.70 E-value=2e-07 Score=108.38 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=53.1
Q ss_pred cceeEChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 443 YDGQQDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 443 ~~g~Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
+.+++|...+...+...+.+. |++++ .+.|+++..+ +++|.||.+.+ | ..+.|+.||+|||.|.+.
T Consensus 93 ~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~d---G--~~I~Ak~VIlATGTFL~g 159 (618)
T PRK05192 93 LRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQD---G--LEFRAKAVVLTTGTFLRG 159 (618)
T ss_pred cHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEec-CCEEEEEEECC---C--CEEECCEEEEeeCcchhc
Confidence 345788889999998888766 78875 6789999887 78899998754 3 369999999999988743
No 146
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.69 E-value=3.3e-07 Score=112.74 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHC----CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 449 DARMCLAIALTATRH----GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~~~----Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
+..++..|...+++. ++++.+++.+.+|+.+ +|+|.||.+.+..+|+...|.|+.||+|||++...
T Consensus 138 G~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 138 GKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred chhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEee-CCEEEEEEEEecCCCcEEEEECCEEEECCCccccC
Confidence 345666666666544 6788888888899887 78999998766556776779999999999998743
No 147
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.69 E-value=6.6e-08 Score=86.28 Aligned_cols=69 Identities=14% Similarity=0.425 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhhcC-CC-CceeeHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 630 EEINQYIKRFQIMDK-ER-KGYVSINDIRRGLKN-----FGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 630 ee~~~l~~~F~~fD~-d~-~G~Is~~eL~~~L~~-----lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
..+..++++|+.||. |+ +|+|+.+||+.+++. +|..+++++++.+++.+|.+++|.|+|+||+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 345779999999997 87 699999999999987 5778899999999999999999999999999988754
No 148
>PRK06834 hypothetical protein; Provisional
Probab=98.69 E-value=1.3e-06 Score=100.66 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
..+...|.+.+++.|++++++++|+++..+ ++.+ .|++.+ ++ ++.|+.||.|.|++| .+.+.+|+..+
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v-~v~~~~---g~--~i~a~~vVgADG~~S-~vR~~lgi~~~ 167 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQD-DTGV-DVELSD---GR--TLRAQYLVGCDGGRS-LVRKAAGIDFP 167 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeE-EEEECC---CC--EEEeCEEEEecCCCC-CcHhhcCCCCC
Confidence 346667777788889999999999999887 4443 344422 32 699999999999999 46677777654
No 149
>PRK07233 hypothetical protein; Provisional
Probab=98.68 E-value=1.4e-06 Score=97.75 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCC
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF 512 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaw 512 (737)
...++.+|++.+++.|++|+++++|++|+.+ ++++.+++. +++ .+.||.||+|+.+.
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~~----~~~--~~~ad~vI~a~p~~ 253 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVEV----DGE--EEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEEe----CCc--eEECCEEEECCCHH
Confidence 4578999999999999999999999999987 666655542 232 58999999999863
No 150
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.68 E-value=8.2e-08 Score=85.30 Aligned_cols=68 Identities=21% Similarity=0.471 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhc-CCCCc-eeeHHHHHHHHHH-hC----CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 631 EINQYIKRFQIMD-KERKG-YVSINDIRRGLKN-FG----ETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 631 e~~~l~~~F~~fD-~d~~G-~Is~~eL~~~L~~-lg----~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
-++.++++|+.|| ++++| .|+.+||+.+|+. +| ..+++++++++|+.+|.+++|.|+|+||+.++..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3467999999997 99999 5999999999986 54 35688999999999999999999999999998764
No 151
>PLN02661 Putative thiazole synthesis
Probab=98.68 E-value=3.2e-07 Score=100.22 Aligned_cols=64 Identities=20% Similarity=0.155 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHH-CCcEEecCceEEEEEEcCCCcEEEEEEe------ecccC---eeEEEEcCEEEecCCCCh
Q psy8270 449 DARMCLAIALTATR-HGATVANHVRVTNLIKDDKGKVRGAHLR------DELTG---KEWDLKAKSVINATGPFT 513 (737)
Q Consensus 449 p~~~v~al~~~A~~-~Gve~~~nt~V~~L~~d~~~~V~gV~~~------~~~tg---~~~~I~Ad~VV~a~Gaws 513 (737)
...++..|...+.+ .|++++.++.|++++.+ ++++.||.+. +..++ +...|.|+.||+|||.-.
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 34566677776654 68999999999999998 7899999852 11111 123689999999999543
No 152
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.67 E-value=7e-08 Score=84.80 Aligned_cols=70 Identities=20% Similarity=0.452 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhhcC--CCCceeeHHHHHHHHHH-hCCCC----CHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 629 KEEINQYIKRFQIMDK--ERKGYVSINDIRRGLKN-FGETI----SGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 629 ~ee~~~l~~~F~~fD~--d~~G~Is~~eL~~~L~~-lg~~~----s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
+++++.++.+|+.||+ +++|.|+.++|+.+++. +|..+ ++++++.+++.+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4677889999999999 89999999999999986 56444 58999999999999999999999999988753
No 153
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.64 E-value=7.4e-07 Score=98.97 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHH-CCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 451 RMCLAIALTATR-HGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 451 ~~v~al~~~A~~-~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
.+...|...+.+ .|++++++++|+++..+ ++.+ .|++.+ ++ .+.|+.||.|.|.|+. +.+.++.+.+
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~~---g~--~~~a~~vI~AdG~~S~-vr~~~~~~~~ 180 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERT-QGSV-RVTLDD---GE--TLTGRLLVAADGSHSA-LREALGIDWQ 180 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeE-EEEECC---CC--EEEeCEEEEecCCChh-hHHhhCCCcc
Confidence 455566666655 48999999999999876 4443 355433 32 5899999999999986 6677766544
No 154
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.64 E-value=6.1e-07 Score=102.66 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIR 517 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~ 517 (737)
...++..|...+++.|++++++ .|+.+..+ ++++.||.+ + ++ .+.|+.||+|||.|+....
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~-~---g~--~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFL-D---GE--LLKFDATVIATGGFSGLFK 179 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEE-C---CE--EEEeCeEEECCCcCcCCCC
Confidence 4578889999999999999875 89999876 688888875 2 32 5899999999999998653
No 155
>KOG0037|consensus
Probab=98.63 E-value=4.1e-07 Score=91.42 Aligned_cols=95 Identities=17% Similarity=0.376 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHhccc-----hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHH
Q psy8270 586 PTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLK 660 (737)
Q Consensus 586 pteeeI~~Lls~~D~d-----~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~ 660 (737)
-+.+..+.++.-+|.+ +|.||. .+.+.+ +.++++|+.||+|++|.|+.+||+++|.
T Consensus 91 Fs~~TcrlmI~mfd~~~~G~i~f~EF~--~Lw~~i-----------------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~ 151 (221)
T KOG0037|consen 91 FSIETCRLMISMFDRDNSGTIGFKEFK--ALWKYI-----------------NQWRNVFRTYDRDRSGTIDSSELRQALT 151 (221)
T ss_pred CCHHHHHHHHHHhcCCCCCccCHHHHH--HHHHHH-----------------HHHHHHHHhcccCCCCcccHHHHHHHHH
Confidence 3455667777777766 788885 333233 6689999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc
Q psy8270 661 NFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAIK 699 (737)
Q Consensus 661 ~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~~ 699 (737)
.+|+.++.+-++.|++.+|..++|.|.|++|++.+..+.
T Consensus 152 ~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 152 QLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 999999999999999999988899999999999887653
No 156
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.63 E-value=6.8e-07 Score=99.47 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=50.7
Q ss_pred EChHHHHHHHHHHHHHCC-cEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCC
Q psy8270 447 QDDARMCLAIALTATRHG-ATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDG 522 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~G-ve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~ 522 (737)
++...+...|.+.+.+.| ++++++++|+++..+ ++.+. |++.+ |+ ++.||.||.|.|.|+.......+.
T Consensus 106 i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~-v~~~~---g~--~~~ad~vV~AdG~~S~~r~~~~g~ 175 (396)
T PRK08163 106 IHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVT-VFDQQ---GN--RWTGDALIGCDGVKSVVRQSLVGD 175 (396)
T ss_pred EEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceE-EEEcC---CC--EEecCEEEECCCcChHHHhhccCC
Confidence 455678888888887775 899999999999876 44432 44332 32 589999999999999775444443
No 157
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.63 E-value=6.2e-07 Score=103.79 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=47.4
Q ss_pred CcEEecCceEEEEEEcCC--CcEEEEEEeecccCeeEEEEcCEEEecCCC-ChhhhhhhcCC
Q psy8270 464 GATVANHVRVTNLIKDDK--GKVRGAHLRDELTGKEWDLKAKSVINATGP-FTDSIRRMDDG 522 (737)
Q Consensus 464 Gve~~~nt~V~~L~~d~~--~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Ga-ws~~L~~~lG~ 522 (737)
.++++.++.|++|+.+++ ++|.+|++.+..+++..+++|+.||+|+|+ .+..|+-..+.
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~ 289 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGF 289 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCC
Confidence 489999999999998743 479999998865577778999999999995 67777655443
No 158
>KOG0031|consensus
Probab=98.62 E-value=3.7e-07 Score=86.80 Aligned_cols=103 Identities=19% Similarity=0.380 Sum_probs=92.2
Q ss_pred CCCCCCHHHHHHHHHHhccc-hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHH
Q psy8270 582 HHPKPTEDEIMFILQEKQLK-EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLK 660 (737)
Q Consensus 582 ~d~~pteeeI~~Lls~~D~d-~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~ 660 (737)
.+..+++++++.++.+..-. +|.-|| .++..++... +++ +.+.++|+.||.+++|.|..+.|+++|.
T Consensus 61 lGk~~~d~elDaM~~Ea~gPINft~FL-TmfGekL~gt---------dpe--~~I~~AF~~FD~~~~G~I~~d~lre~Lt 128 (171)
T KOG0031|consen 61 LGKIASDEELDAMMKEAPGPINFTVFL-TMFGEKLNGT---------DPE--EVILNAFKTFDDEGSGKIDEDYLRELLT 128 (171)
T ss_pred cCCCCCHHHHHHHHHhCCCCeeHHHHH-HHHHHHhcCC---------CHH--HHHHHHHHhcCccCCCccCHHHHHHHHH
Confidence 45568999999999997656 999999 7888888653 333 5699999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy8270 661 NFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696 (737)
Q Consensus 661 ~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~ 696 (737)
.+|..++++||++++..+-.+..|.++|..|+.+++
T Consensus 129 t~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 129 TMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 999999999999999999999999999999999987
No 159
>PTZ00184 calmodulin; Provisional
Probab=98.62 E-value=3.9e-07 Score=86.56 Aligned_cols=100 Identities=27% Similarity=0.598 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHhccc-----hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHH
Q psy8270 585 KPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGL 659 (737)
Q Consensus 585 ~pteeeI~~Lls~~D~d-----~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L 659 (737)
.+..+.+..++..++.+ ++++|+ ..+....... .....++.+|+.||.+++|+|+..++..++
T Consensus 43 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~-~~l~~~~~~~-----------~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l 110 (149)
T PTZ00184 43 NPTEAELQDMINEVDADGNGTIDFPEFL-TLMARKMKDT-----------DSEEEIKEAFKVFDRDGNGFISAAELRHVM 110 (149)
T ss_pred CCCHHHHHHHHHhcCcCCCCcCcHHHHH-HHHHHhccCC-----------cHHHHHHHHHHhhCCCCCCeEeHHHHHHHH
Confidence 34567888888887665 788887 3443222110 122567899999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy8270 660 KNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696 (737)
Q Consensus 660 ~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~ 696 (737)
+.+|..++.++++.++..+|.+++|.|+|+||+.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 111 TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 9999889999999999999999999999999998875
No 160
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.62 E-value=2e-06 Score=95.62 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=78.3
Q ss_pred ecceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcC
Q psy8270 442 YYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDD 521 (737)
Q Consensus 442 ~~~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG 521 (737)
++.+.++...+-..+.+.+. .++.++.++.|++|..+ ++ .+.|++.+ |+ .++|+.||-|.|..+. .....+
T Consensus 79 ~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~-~~-~~~v~~~~---g~--~i~a~~VvDa~g~~~~-~~~~~~ 149 (374)
T PF05834_consen 79 YPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEET-GD-GVLVVLAD---GR--TIRARVVVDARGPSSP-KARPLG 149 (374)
T ss_pred cceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEec-Cc-eEEEEECC---CC--EEEeeEEEECCCcccc-cccccc
Confidence 34457888899999999888 55566778999999887 33 33455443 33 6999999999996444 111111
Q ss_pred CCccccccccceEEEEecCC-CCCCCceeeecCC----CCCcEEEEeecC-CeEeeecCCC
Q psy8270 522 GQVQKICVPSSGVHIVLPGY-YSPDQMGLLDPST----SDGRVIFFLPWL-KHTIAGTTDL 576 (737)
Q Consensus 522 ~~lp~~i~p~KG~~lvv~~~-~~~~~~~i~~~~~----~Dgr~iy~~P~~-g~~ivG~Tde 576 (737)
.+--.|..+.++.+ +.+....+|-... ...+++|++|.+ +..+|..|..
T Consensus 150 ------~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~f 204 (374)
T PF05834_consen 150 ------LQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSF 204 (374)
T ss_pred ------cceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEE
Confidence 33446777777766 3333333433222 234789999996 5777877653
No 161
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.61 E-value=2.5e-06 Score=95.71 Aligned_cols=76 Identities=22% Similarity=0.209 Sum_probs=52.1
Q ss_pred eEChHHHHHHHHHHHHHCCcEEecCceEEEEEEc-CCCcEEEEEEeecc----cCeeEEEEcCEEEecCCCChhhhhhhc
Q psy8270 446 QQDDARMCLAIALTATRHGATVANHVRVTNLIKD-DKGKVRGAHLRDEL----TGKEWDLKAKSVINATGPFTDSIRRMD 520 (737)
Q Consensus 446 ~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d-~~~~V~gV~~~~~~----tg~~~~I~Ad~VV~a~Gaws~~L~~~l 520 (737)
.++-..+-..|+..|.+.|++++.++ +.++... +.+..++|++.... +|+...++|+.||.|+|+.+ .+.+.+
T Consensus 89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~~~ 166 (398)
T TIGR02028 89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAKEI 166 (398)
T ss_pred eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHHHh
Confidence 35555677778888999999998775 7777542 13455667654321 14445799999999999988 466666
Q ss_pred CCC
Q psy8270 521 DGQ 523 (737)
Q Consensus 521 G~~ 523 (737)
+..
T Consensus 167 g~~ 169 (398)
T TIGR02028 167 DAG 169 (398)
T ss_pred CCC
Confidence 653
No 162
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.60 E-value=2.2e-06 Score=99.83 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 450 ARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 450 ~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
..+...|.+.+.+. |++++++++|++++.+ ++.+ .|++.+. +|+..+++|+.||-|.|++|. +.+.++...
T Consensus 113 ~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~-~~~v-~v~~~~~-~G~~~~i~ad~vVgADG~~S~-vR~~lg~~~ 184 (538)
T PRK06183 113 PLLEAVLRAGLARFPHVRVRFGHEVTALTQD-DDGV-TVTLTDA-DGQRETVRARYVVGCDGANSF-VRRTLGVPF 184 (538)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCEEEEEEEc-CCeE-EEEEEcC-CCCEEEEEEEEEEecCCCchh-HHHHcCCee
Confidence 34556666666665 8999999999999887 4444 4555432 354457999999999999885 444556543
No 163
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.60 E-value=5e-06 Score=97.01 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 451 RMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 451 ~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
.+-..|.+.+.+. |++++++++|+++..+ ++.+ .+++.+. ++ ..++.|+.||.|.|+++. +.+.+|+...
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~v-~v~~~~~-~g-~~~i~ad~vVgADG~~S~-vR~~lg~~~~ 196 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQH-DDGV-TLTVETP-DG-PYTLEADWVIACDGARSP-LREMLGLEFE 196 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEc-CCEE-EEEEECC-CC-cEEEEeCEEEECCCCCcH-HHHHcCCCCC
Confidence 4555666666665 7899999999999887 4443 3444431 22 236899999999999986 5566776544
No 164
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.59 E-value=5.5e-06 Score=92.42 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHCC-cEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcC
Q psy8270 449 DARMCLAIALTATRHG-ATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDD 521 (737)
Q Consensus 449 p~~~v~al~~~A~~~G-ve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG 521 (737)
-..+...|.+.+.+.+ ++++++++|+.+..+ ++.+. +++.. +|+ ++.|+.||-|-|.+|.- -+.++
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~--dG~--~~~a~llVgADG~~S~v-R~~~~ 169 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSF--DGE--TLDADLLVGADGANSAV-RRAAG 169 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceE-EEEcC--CCc--EEecCEEEECCCCchHH-HHhcC
Confidence 3467788888888877 899999999999998 56666 77762 244 69999999999998843 34445
No 165
>PTZ00183 centrin; Provisional
Probab=98.59 E-value=4.5e-07 Score=87.36 Aligned_cols=100 Identities=27% Similarity=0.579 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHhccc-----hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHH
Q psy8270 586 PTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLK 660 (737)
Q Consensus 586 pteeeI~~Lls~~D~d-----~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~ 660 (737)
.+...+..++..++.+ ++.+|+. .+...... . ...+.++.+|+.+|.+++|.|+..||..++.
T Consensus 50 ~~~~~~~~l~~~~d~~~~g~i~~~eF~~-~~~~~~~~--------~---~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 50 PKKEEIKQMIADVDKDGSGKIDFEEFLD-IMTKKLGE--------R---DPREEILKAFRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred CCHHHHHHHHHHhCCCCCCcEeHHHHHH-HHHHHhcC--------C---CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3455666666666554 5666662 22221111 0 1114467777777777777777777777777
Q ss_pred HhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 661 NFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 661 ~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
.+|..++..+++.+|..+|.+++|.|+|+||+.++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 118 ELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 7777777777777777777777777777777776653
No 166
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.59 E-value=5.6e-08 Score=110.00 Aligned_cols=72 Identities=22% Similarity=0.372 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
+|..+-..+...+.+.|+++++++.|.++..+ +++|++|++.+.. | ..+|+|+.||=|||- ..|+...|.+.
T Consensus 88 ~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~-g-~~~i~A~~~IDaTG~--g~l~~~aG~~~ 159 (428)
T PF12831_consen 88 DPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKS-G-RKEIRAKVFIDATGD--GDLAALAGAPY 159 (428)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccccc-c-ccccccccccccccc--ccccccccccc
Confidence 44444444555567789999999999999998 8899999987642 4 457999999999993 56777777654
No 167
>KOG0030|consensus
Probab=98.59 E-value=2.3e-07 Score=86.74 Aligned_cols=105 Identities=20% Similarity=0.453 Sum_probs=86.8
Q ss_pred CCCCCCCHHHHHHHHHHhccc-------hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHH
Q psy8270 581 THHPKPTEDEIMFILQEKQLK-------EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSIN 653 (737)
Q Consensus 581 ~~d~~pteeeI~~Lls~~D~d-------~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~ 653 (737)
..+.+|+..++.+.+.+...+ +|+.||| ++....+.+ .+-..+++-+.++.||++++|.|...
T Consensus 39 alG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLp-m~q~vaknk---------~q~t~edfvegLrvFDkeg~G~i~~a 108 (152)
T KOG0030|consen 39 ALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLP-MYQQVAKNK---------DQGTYEDFVEGLRVFDKEGNGTIMGA 108 (152)
T ss_pred HhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHH-HHHHHHhcc---------ccCcHHHHHHHHHhhcccCCcceeHH
Confidence 467889999998888887655 8999996 555444332 22455778999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy8270 654 DIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696 (737)
Q Consensus 654 eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~ 696 (737)
||+.+|..+|..++++|++.++.-.. |++|.|+|++|++.+.
T Consensus 109 eLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 109 ELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 99999999999999999999998754 6789999999997653
No 168
>PRK08013 oxidoreductase; Provisional
Probab=98.59 E-value=2.6e-06 Score=95.40 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=50.8
Q ss_pred EChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 447 QDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
+.-..+...|.+.+.+. |++++++++|++++.+ ++.+ .|++.+ |+ ++.|+.||-|.|.+| .+.+.++++.+
T Consensus 108 i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~---g~--~i~a~lvVgADG~~S-~vR~~~~~~~~ 179 (400)
T PRK08013 108 IENSVIHYALWQKAQQSSDITLLAPAELQQVAWG-ENEA-FLTLKD---GS--MLTARLVVGADGANS-WLRNKADIPLT 179 (400)
T ss_pred EEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCeE-EEEEcC---CC--EEEeeEEEEeCCCCc-HHHHHcCCCcc
Confidence 34456777888878775 7999999999999876 3333 355433 43 599999999999998 44455565543
No 169
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.58 E-value=5.9e-07 Score=101.67 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcC-CCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDD-KGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~-~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
...++..|...++++|++|+++++|++|+.++ ++++.+|...+ + ...+.|+.||+|||.++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~---~-~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV---G-THRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC---C-cEEEEcCEEEEcCCCccc
Confidence 45688999999999999999999999998763 47888887532 2 236899999999998765
No 170
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.57 E-value=1.5e-06 Score=99.73 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcC--CC--cEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDD--KG--KVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~--~~--~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
..+...+.+.+++.|++|+.+++|++|..+. ++ ++++|++.+. .+ ...+.||+||+|+.+|.
T Consensus 219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g-~~-~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKP-EG-KKVIKADAYVAACDVPG 284 (474)
T ss_pred hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecC-Cc-ceEEECCEEEECCChHH
Confidence 3456778888888999999999999998752 12 3778777541 11 12589999999999875
No 171
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.57 E-value=9.8e-06 Score=91.46 Aligned_cols=62 Identities=23% Similarity=0.265 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
.++...+.+.+++.|++++++++|+++..+ ++++..+... .++...+.||.||+|+|.+...
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~---~g~~~~i~AD~VVLAtGrf~s~ 320 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTR---NHGDIPLRARHFVLATGSFFSG 320 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEee---CCceEEEECCEEEEeCCCcccC
Confidence 368888888888999999999999999887 5667666532 2444579999999999987543
No 172
>PRK07190 hypothetical protein; Provisional
Probab=98.56 E-value=3.8e-06 Score=96.72 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCcc
Q psy8270 451 RMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQ 525 (737)
Q Consensus 451 ~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~lp 525 (737)
.+-..|.+.+.+.|++++.+++|+++..+ ++.+. +++. +++ +++|+.||.|.|++| .+.+.+|++.+
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~-~~~v~-v~~~---~g~--~v~a~~vVgADG~~S-~vR~~lgi~f~ 176 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELN-QAGCL-TTLS---NGE--RIQSRYVIGADGSRS-FVRNHFNVPFE 176 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeeE-EEEC---CCc--EEEeCEEEECCCCCH-HHHHHcCCCcc
Confidence 34455666778899999999999999887 44432 3332 233 699999999999987 34455676544
No 173
>PRK09126 hypothetical protein; Provisional
Probab=98.56 E-value=1.8e-06 Score=95.94 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHH-HCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 450 ARMCLAIALTAT-RHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 450 ~~~v~al~~~A~-~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
..+.+.+.+.+. ..|++++++++|++++.+ ++. +.|++.+ |+ .+.||.||.|.|.++. +.+.+++..
T Consensus 110 ~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~-~~v~~~~---g~--~~~a~~vI~AdG~~S~-vr~~~g~~~ 177 (392)
T PRK09126 110 HLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDG-AQVTLAN---GR--RLTARLLVAADSRFSA-TRRQLGIGA 177 (392)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCe-EEEEEcC---CC--EEEeCEEEEeCCCCch-hhHhcCCCc
Confidence 345566666654 469999999999999876 444 3455533 33 5999999999999874 455556543
No 174
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.55 E-value=1.8e-07 Score=77.11 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=55.8
Q ss_pred HHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 636 IKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 636 ~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
+++|+.+|.+++|.|+.+|++.+++.+|. ++++++++++.+|.+++|.|+|+||+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 67899999999999999999999999874 8889999999999999999999999998864
No 175
>PLN02612 phytoene desaturase
Probab=98.55 E-value=1.6e-06 Score=101.53 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
+..++..|++.+++.|++|+++++|++|..++++++++|++.+ |+ .+.||+||+|+.+..
T Consensus 307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---G~--~~~ad~VI~a~p~~~ 366 (567)
T PLN02612 307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---GS--VVEGDVYVSATPVDI 366 (567)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---Cc--EEECCEEEECCCHHH
Confidence 3578899999888899999999999999986467677787643 43 589999999997633
No 176
>PLN02463 lycopene beta cyclase
Probab=98.55 E-value=3.9e-06 Score=95.49 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=49.3
Q ss_pred ceeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 444 DGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 444 ~g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
.+.++...+...+.+.+.+.|++++ .++|+++..+ +++ +.|++.+ |+ ++.|+.||.|+|..+.
T Consensus 108 y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~-~~V~~~d---G~--~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 108 YGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHE-ESK-SLVVCDD---GV--KIQASLVLDATGFSRC 170 (447)
T ss_pred ceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCe-EEEEECC---CC--EEEcCEEEECcCCCcC
Confidence 3467888888999998989999997 5799999876 444 4566543 32 6999999999999765
No 177
>KOG0041|consensus
Probab=98.54 E-value=2.4e-07 Score=91.36 Aligned_cols=89 Identities=16% Similarity=0.412 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcCCCCCHH
Q psy8270 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYS 706 (737)
Q Consensus 627 ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~~~G~is~~ 706 (737)
++..+++.+..+|+.||.+.||+|+..||+.+|.++|.+.|.--++++|+++|.|.||+|+|-||+-++.....|.+..+
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~d 172 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQED 172 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccc
Confidence 35678899999999999999999999999999999999999888999999999999999999999999988888988887
Q ss_pred HHHHHHHHh
Q psy8270 707 RFAKMAEME 715 (737)
Q Consensus 707 elk~~l~~l 715 (737)
.-...|..+
T Consensus 173 s~~~~LAr~ 181 (244)
T KOG0041|consen 173 SGLLRLARL 181 (244)
T ss_pred hHHHHHHHh
Confidence 777777765
No 178
>PRK07045 putative monooxygenase; Reviewed
Probab=98.54 E-value=1.3e-05 Score=89.23 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHH-HCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 449 DARMCLAIALTAT-RHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 449 p~~~v~al~~~A~-~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
-..+...|.+.+. ..|++++++++|+++..++++.++.|++.+ |+ ++.|+.||-|.|.+|.-
T Consensus 105 r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g~--~~~~~~vIgADG~~S~v 167 (388)
T PRK07045 105 CEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD---GE--RVAPTVLVGADGARSMI 167 (388)
T ss_pred HHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC---CC--EEECCEEEECCCCChHH
Confidence 3456666777664 458999999999999886455556676543 43 58999999999998844
No 179
>PLN02985 squalene monooxygenase
Probab=98.54 E-value=5e-06 Score=96.32 Aligned_cols=72 Identities=19% Similarity=0.339 Sum_probs=52.3
Q ss_pred EChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCC
Q psy8270 447 QDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDG 522 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~ 522 (737)
+.-..+...|.+.+.+. |+++..+ .|+++..+ ++.+.+|++.+. +|+..++.|+.||.|.|.+|.- .+.++.
T Consensus 144 i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~-dG~~~~~~AdLVVgADG~~S~v-R~~l~~ 216 (514)
T PLN02985 144 FHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNS-AGEETTALAPLTVVCDGCYSNL-RRSLND 216 (514)
T ss_pred eecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEcC-CCCEEEEECCEEEECCCCchHH-HHHhcc
Confidence 44567888888888776 6888754 68888776 677788887643 3545568899999999999954 344443
No 180
>PRK11445 putative oxidoreductase; Provisional
Probab=98.53 E-value=6.2e-06 Score=90.80 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=47.1
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCC
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDG 522 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~ 522 (737)
++-..+-..|.. +...|+++++++.|+++..+ ++. +.|++.. +++..++.|+.||.|+|..|. +.+.++.
T Consensus 96 i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~--~g~~~~i~a~~vV~AdG~~S~-vr~~l~~ 165 (351)
T PRK11445 96 IDRHKFDLWLKS-LIPASVEVYHNSLCRKIWRE-DDG-YHVIFRA--DGWEQHITARYLVGADGANSM-VRRHLYP 165 (351)
T ss_pred ccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEc-CCE-EEEEEec--CCcEEEEEeCEEEECCCCCcH-HhHHhcC
Confidence 444555555555 45678999999999999876 343 3455432 344346999999999999884 4444443
No 181
>PLN02964 phosphatidylserine decarboxylase
Probab=98.53 E-value=4.6e-07 Score=105.75 Aligned_cols=96 Identities=20% Similarity=0.294 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhC-CCCCHHH---HHHHHHHhCCCCCCceeHHHHHHHHHhh-------
Q psy8270 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFG-ETISGEE---LHEILREIDSNMNGQVELDEYLQMMSAI------- 698 (737)
Q Consensus 630 ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg-~~~s~~e---v~~i~~~~D~d~dG~I~feEF~~ll~~~------- 698 (737)
.|+++++++|..||+|++|.+ +..+++++| ..+++++ ++++|+.+|.+++|.|+|+||+.++..+
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seE 215 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAAN 215 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHH
Confidence 455667777777777777775 777777777 4666665 6777777777777777777777766543
Q ss_pred ------------cCCCCCHHHHHHHHHH-------------hCCcCCH-HHHHHHHc
Q psy8270 699 ------------KSGHVAYSRFAKMAEM-------------EEEKHEK-EILKKQIS 729 (737)
Q Consensus 699 ------------~~G~is~~elk~~l~~-------------lg~~ls~-~el~~~i~ 729 (737)
++|+|+.+||+++++. +++.++. ++++.|++
T Consensus 216 EL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH 272 (644)
T PLN02964 216 KKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIH 272 (644)
T ss_pred HHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHH
Confidence 2556666666666555 5666666 66777765
No 182
>PRK07588 hypothetical protein; Provisional
Probab=98.53 E-value=5.4e-06 Score=92.31 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
..+...|...+ ..|++++++++|++++.+ ++.+. |++.+ |+ .+.+|.||.|.|.+|.--
T Consensus 103 ~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~-~~~v~-v~~~~---g~--~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 103 GDLAAAIYTAI-DGQVETIFDDSIATIDEH-RDGVR-VTFER---GT--PRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHHHHHHHHhh-hcCeEEEeCCEEeEEEEC-CCeEE-EEECC---CC--EEEeCEEEECCCCCccch
Confidence 34555555543 458999999999999887 45443 55443 33 478999999999988553
No 183
>PRK02106 choline dehydrogenase; Validated
Probab=98.53 E-value=2.8e-06 Score=99.43 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=46.9
Q ss_pred HHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCC-hhhhhhhcCC
Q psy8270 461 TRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF-TDSIRRMDDG 522 (737)
Q Consensus 461 ~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaw-s~~L~~~lG~ 522 (737)
.+.+++|+.++.|++|+.+ +++++||++.+. .++...+.++.||+|+|++ ++.|+...|+
T Consensus 212 ~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~-~~~~~~~~ak~VILaaGai~TP~LLl~SGI 272 (560)
T PRK02106 212 KRPNLTIVTHALTDRILFE-GKRAVGVEYERG-GGRETARARREVILSAGAINSPQLLQLSGI 272 (560)
T ss_pred CCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeC-CcEEEEEeeeeEEEccCCCCCHHHHhhcCC
Confidence 3567999999999999998 788999998773 2333346789999999984 6777766565
No 184
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.52 E-value=4.6e-07 Score=80.21 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhh-hcCCCCc-eeeHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 629 KEEINQYIKRFQI-MDKERKG-YVSINDIRRGLKNF-----GETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 629 ~ee~~~l~~~F~~-fD~d~~G-~Is~~eL~~~L~~l-----g~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
+..+..+..+|+. +|+++++ .|+.+||+.++... +...++.+++++++.+|.|+||.|+|+||+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3556889999999 6788876 99999999999985 446678899999999999999999999999988754
No 185
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.51 E-value=1.3e-06 Score=97.59 Aligned_cols=69 Identities=10% Similarity=0.033 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCC
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDG 522 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~ 522 (737)
..+...|...+.+.|++++++++|+++... ++....|++.. +|+..++.||.||-|.|++|. +.+.++.
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~--~G~~~~i~ad~vVgADG~~S~-vR~~~~~ 171 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYEK--DGEEHRLDCDFIAGCDGFHGV-SRASIPA 171 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEEc--CCeEEEEEeCEEEECCCCCCc-hhhhcCc
Confidence 356677777778889999999999999763 23334566543 455557999999999999883 4444443
No 186
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.49 E-value=6.5e-06 Score=91.62 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCC
Q psy8270 451 RMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQ 523 (737)
Q Consensus 451 ~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~ 523 (737)
.+...|...+.+. |++++++++|++++.+ ++.+ .|++.+ |+ ++.|+.||.|.|.+|.- .+.++..
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~-~~~~-~v~~~~---g~--~~~~~lvIgADG~~S~v-R~~~gi~ 176 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFS-AEGN-RVTLES---GA--EIEAKWVIGADGANSQV-RQLAGIG 176 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEc-CCeE-EEEECC---CC--EEEeeEEEEecCCCchh-HHhcCCC
Confidence 4555666665554 7999999999999887 4443 366543 33 69999999999998843 3444543
No 187
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.49 E-value=1.1e-06 Score=102.02 Aligned_cols=64 Identities=27% Similarity=0.381 Sum_probs=51.2
Q ss_pred ceeEChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 444 DGQQDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 444 ~g~Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
.+++|+..+...+...+++. |++++ ...|+.+..++++++.+|.+.+ |. .+.|+.||+|||.|.
T Consensus 90 RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~---G~--~I~Ad~VILATGtfL 154 (617)
T TIGR00136 90 RAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQD---GL--KFRAKAVIITTGTFL 154 (617)
T ss_pred HHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECC---CC--EEECCEEEEccCccc
Confidence 36789999999999988888 67776 5578888765367899998754 33 599999999999994
No 188
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.47 E-value=5.9e-06 Score=93.76 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=50.0
Q ss_pred EChHHHHHHHHHHHHHCC---cEEecCceEEEEEEc-----CCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhh
Q psy8270 447 QDDARMCLAIALTATRHG---ATVANHVRVTNLIKD-----DKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRR 518 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~G---ve~~~nt~V~~L~~d-----~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~ 518 (737)
+.-..+...|.+.+.+.+ ++++++++|+++..+ +++..+.|++.+ |+ +++|+.||-|-|++|. +.+
T Consensus 114 i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~---g~--~i~a~llVgADG~~S~-vR~ 187 (437)
T TIGR01989 114 IENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSD---GQ--VLYTKLLIGADGSNSN-VRK 187 (437)
T ss_pred EEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcC---CC--EEEeeEEEEecCCCCh-hHH
Confidence 344567777888777775 899999999999752 122223455433 43 6999999999999884 345
Q ss_pred hcCCCcc
Q psy8270 519 MDDGQVQ 525 (737)
Q Consensus 519 ~lG~~lp 525 (737)
.+++...
T Consensus 188 ~~gi~~~ 194 (437)
T TIGR01989 188 AANIDTT 194 (437)
T ss_pred HcCCCcc
Confidence 5566543
No 189
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.46 E-value=1.9e-06 Score=95.48 Aligned_cols=65 Identities=32% Similarity=0.514 Sum_probs=49.6
Q ss_pred eeEChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 445 GQQDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 445 g~Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
.++|-..+-..+.+.+..+ +++++ .++|++|..+ +++|+||.+.+ |+ .+.|+.||+|||.+.+..
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~---g~--~~~a~~vVlaTGtfl~G~ 155 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKD---GE--EIEADAVVLATGTFLNGC 155 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETT---SE--EEEECEEEE-TTTGBTSE
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCC---CC--EEecCEEEEecccccCce
Confidence 4678888888888888775 67776 6899999998 89999998754 43 699999999999955443
No 190
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.43 E-value=8e-07 Score=70.69 Aligned_cols=52 Identities=31% Similarity=0.675 Sum_probs=49.3
Q ss_pred CCceeeHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 646 RKGYVSINDIRRGLKNFGET-ISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 646 ~~G~Is~~eL~~~L~~lg~~-~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
++|.|+.++|+.+|..+|.. +++++++.+|..+|.+++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999889999 99999999999999999999999999999875
No 191
>KOG0034|consensus
Probab=98.43 E-value=1.9e-06 Score=86.47 Aligned_cols=109 Identities=19% Similarity=0.444 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCC-CCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc-eeHHHHHHHHHhh----
Q psy8270 625 INLTKEEINQYIKRFQIMDKE-RKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ-VELDEYLQMMSAI---- 698 (737)
Q Consensus 625 ~~ls~ee~~~l~~~F~~fD~d-~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~-I~feEF~~ll~~~---- 698 (737)
..++..|+..|...|+.+|.+ ++|+|+.+||..+. .+..++ -..+++..++.++++. |+|++|++.+...
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 357889999999999999999 99999999999988 434444 3567888888888777 9999999988654
Q ss_pred ----------------cCCCCCHHHHHHHHHHh-CCcCC--HHHHHHHHc-----cccCCCCC
Q psy8270 699 ----------------KSGHVAYSRFAKMAEME-EEKHE--KEILKKQIS-----VERSGGGL 737 (737)
Q Consensus 699 ----------------~~G~is~~elk~~l~~l-g~~ls--~~el~~~i~-----~D~ngDG~ 737 (737)
++|+|+.+|+++++..+ +...+ ++.++++++ +|.++||+
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~ 163 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGK 163 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 58999999999999986 54555 777666655 99999985
No 192
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.43 E-value=1.1e-05 Score=89.50 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=49.5
Q ss_pred EChHHHHHHHHHHHHHCC-cEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCC
Q psy8270 447 QDDARMCLAIALTATRHG-ATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQ 523 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~G-ve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~ 523 (737)
+.-..+...|.+.+.+.+ ++++++++|++++.+ ++.+ .|++.+ + ++.||.||-|.|.+|.-- +.++.+
T Consensus 101 v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~-----~-~~~adlvIgADG~~S~vR-~~l~~~ 169 (374)
T PRK06617 101 VKNSDFKKILLSKITNNPLITLIDNNQYQEVISH-NDYS-IIKFDD-----K-QIKCNLLIICDGANSKVR-SHYFAN 169 (374)
T ss_pred EEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEc-CCeE-EEEEcC-----C-EEeeCEEEEeCCCCchhH-HhcCCC
Confidence 345678888888888775 899999999999877 4443 355422 2 699999999999988543 444443
No 193
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.41 E-value=1.2e-05 Score=90.19 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 451 RMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 451 ~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
.+...|.+.+.+. |++++++++|+++..+ ++. +.|++.+ |+ ++.|+.||-|.|.+|. +.+.++...
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~-~~v~~~~---g~--~~~a~lvIgADG~~S~-vR~~~~~~~ 178 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVG-ESE-AWLTLDN---GQ--ALTAKLVVGADGANSW-LRRQMDIPL 178 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEee-CCe-EEEEECC---CC--EEEeCEEEEeCCCCCh-hHHHcCCCe
Confidence 4556677766664 7999999999999876 443 3455543 43 5999999999999874 345556543
No 194
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.40 E-value=4.6e-06 Score=88.68 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCC-hhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF-TDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaw-s~~L 516 (737)
.-++-..|-...++.|+.+..+-+|++.... +|+|+.|.++. +..+-++|+.+|+|+|.+ +.-|
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn---~~diP~~a~~~VLAsGsffskGL 321 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRN---HADIPLRADFYVLASGSFFSKGL 321 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecc---cccCCCChhHeeeeccccccccc
Confidence 3478888989999999999999999999998 89999998764 445578999999999974 4434
No 195
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.39 E-value=1e-06 Score=69.82 Aligned_cols=61 Identities=33% Similarity=0.768 Sum_probs=57.9
Q ss_pred HHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy8270 635 YIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695 (737)
Q Consensus 635 l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll 695 (737)
++.+|..+|.+++|.|+.+++..+++.++...+.+++..+++.++.+++|.|+|++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999999765
No 196
>PF14658 EF-hand_9: EF-hand domain
Probab=98.38 E-value=1.2e-06 Score=72.59 Aligned_cols=61 Identities=25% Similarity=0.512 Sum_probs=57.8
Q ss_pred HHHhhhcCCCCceeeHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCC-CceeHHHHHHHHHh
Q psy8270 637 KRFQIMDKERKGYVSINDIRRGLKNFGE-TISGEELHEILREIDSNMN-GQVELDEYLQMMSA 697 (737)
Q Consensus 637 ~~F~~fD~d~~G~Is~~eL~~~L~~lg~-~~s~~ev~~i~~~~D~d~d-G~I~feEF~~ll~~ 697 (737)
.+|..||.++.|.|..++|+.+|+.++. .+++.+++.+.+++|.++. |.|+|++|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3799999999999999999999999998 9999999999999999987 99999999999975
No 197
>PLN02487 zeta-carotene desaturase
Probab=98.37 E-value=6.6e-06 Score=96.10 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHCCcEEecCceEEEEEEcC--CC--cEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 451 RMCLAIALTATRHGATVANHVRVTNLIKDD--KG--KVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 451 ~~v~al~~~A~~~Gve~~~nt~V~~L~~d~--~~--~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
.++..+++.++++|++|+++++|++|..+. +| +++||++.. .++...+.||.||+|+++|.
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHHH
Confidence 488889999999999999999999998862 22 488898742 12333588999999999885
No 198
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.36 E-value=8.4e-06 Score=91.54 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh----------hhhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT----------DSIRR 518 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws----------~~L~~ 518 (737)
...++..+...+++.|++++++++|+++..+ ++ .+.|++ + ++ .+.|+.||+|+|.++ -.++.
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~-~---~~--~i~ad~VIlAtG~~s~p~~gs~G~g~~la~ 175 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVET-S---GG--EYEADKVILATGGLSYPQLGSTGDGYEIAE 175 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEE-C---Cc--EEEcCEEEECCCCcccCCCCCCcHHHHHHH
Confidence 4578888999999999999999999999775 33 344543 1 22 589999999999866 45677
Q ss_pred hcCCCc
Q psy8270 519 MDDGQV 524 (737)
Q Consensus 519 ~lG~~l 524 (737)
.+|..+
T Consensus 176 ~lG~~i 181 (400)
T TIGR00275 176 SLGHTI 181 (400)
T ss_pred HCCCCE
Confidence 777653
No 199
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.36 E-value=7e-06 Score=91.76 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcC
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDD 521 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG 521 (737)
..+...|.+.+.+.|++++++++++.+... ++....|++.. +|+..++.||.||-|-|++|. +.+.++
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~~--~g~~~~i~adlvIGADG~~S~-VR~~l~ 170 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFER--DGERHRLDCDFIAGCDGFHGV-SRASIP 170 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEEE--CCeEEEEEeCEEEECCCCchh-hHHhcC
Confidence 356677878788889999999998888653 22224576642 354447999999999999995 334443
No 200
>KOG1298|consensus
Probab=98.35 E-value=7e-06 Score=88.86 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhc
Q psy8270 449 DARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMD 520 (737)
Q Consensus 449 p~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~l 520 (737)
-.++++.|.+.|.+. .|++. ...|.++..+ +|.|.||+..+.. |++.+..|.-.|+|-|-+|+---...
T Consensus 146 nGRFvq~lR~ka~slpNV~~e-eGtV~sLlee-~gvvkGV~yk~k~-gee~~~~ApLTvVCDGcfSnlRrsL~ 215 (509)
T KOG1298|consen 146 NGRFVQRLRKKAASLPNVRLE-EGTVKSLLEE-EGVVKGVTYKNKE-GEEVEAFAPLTVVCDGCFSNLRRSLC 215 (509)
T ss_pred ccHHHHHHHHHHhcCCCeEEe-eeeHHHHHhc-cCeEEeEEEecCC-CceEEEecceEEEecchhHHHHHHhc
Confidence 358999998877655 67775 5568888887 7899999988754 44457888899999999997654443
No 201
>KOG0034|consensus
Probab=98.35 E-value=2.4e-06 Score=85.64 Aligned_cols=85 Identities=16% Similarity=0.425 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHh-CCCCC--HHH----HHHH
Q psy8270 602 EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNF-GETIS--GEE----LHEI 674 (737)
Q Consensus 602 ~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~l-g~~~s--~~e----v~~i 674 (737)
+|++|+ ...+.+.... ...++++-+|+.||.+++|+|+.+|++++++.+ +...+ ++. ++++
T Consensus 85 ~F~~Fv-~~ls~f~~~~-----------~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t 152 (187)
T KOG0034|consen 85 DFEEFV-RLLSVFSPKA-----------SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKT 152 (187)
T ss_pred CHHHHH-HHHhhhcCCc-----------cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 788998 5665444322 222689999999999999999999999999986 44444 333 4667
Q ss_pred HHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 675 LREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 675 ~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
|.++|.++||.|+|+||.+++.+.
T Consensus 153 ~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 153 FEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHcC
Confidence 899999999999999999998753
No 202
>KOG2404|consensus
Probab=98.35 E-value=6.7e-06 Score=87.11 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=45.7
Q ss_pred cEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh---hhhhhhcCC
Q psy8270 465 ATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT---DSIRRMDDG 522 (737)
Q Consensus 465 ve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws---~~L~~~lG~ 522 (737)
++|..+++|++|.++ +|+|.||+..|. +|+...+.++.||+|+|.|+ .++++.-++
T Consensus 160 ~ki~~nskvv~il~n-~gkVsgVeymd~-sgek~~~~~~~VVlatGGf~ysd~~lLKey~p 218 (477)
T KOG2404|consen 160 VKILLNSKVVDILRN-NGKVSGVEYMDA-SGEKSKIIGDAVVLATGGFGYSDKELLKEYGP 218 (477)
T ss_pred HhhhhcceeeeeecC-CCeEEEEEEEcC-CCCccceecCceEEecCCcCcChHHHHHHhCh
Confidence 678899999999988 899999999875 57766789999999999765 345555444
No 203
>PRK07538 hypothetical protein; Provisional
Probab=98.33 E-value=6.3e-06 Score=92.64 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=46.6
Q ss_pred EChHHHHHHHHHHHHH-CCc-EEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 447 QDDARMCLAIALTATR-HGA-TVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~-~Gv-e~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
++-..+...|...+.+ .|. +++++++|+++..++++.+ +.+.+..+++..++.||.||-|.|.+|.-
T Consensus 99 i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 99 IHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred EEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEECCCCCHHH
Confidence 5555677778777755 475 6999999999987633322 33433223444579999999999998853
No 204
>PRK06996 hypothetical protein; Provisional
Probab=98.33 E-value=4.4e-05 Score=85.50 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=51.1
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
++-..+...|.+.+.+.|++++.+++|+++..+ ...+ .|++.+. ++ ..+++|+.||.|.|.-+..+.+.++...
T Consensus 112 v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~-~~~v-~v~~~~~-~g-~~~i~a~lvIgADG~~~s~~r~~~~~~~ 185 (398)
T PRK06996 112 VRYGSLVAALARAVRGTPVRWLTSTTAHAPAQD-ADGV-TLALGTP-QG-ARTLRARIAVQAEGGLFHDQKADAGDSA 185 (398)
T ss_pred EEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeec-CCeE-EEEECCC-Cc-ceEEeeeEEEECCCCCchHHHHHcCCCc
Confidence 444578888999999999999999999999766 3332 3444331 12 1369999999999974333435555543
No 205
>KOG0044|consensus
Probab=98.32 E-value=4.8e-06 Score=83.73 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHhccc------hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHH
Q psy8270 585 KPTEDEIMFILQEKQLK------EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRG 658 (737)
Q Consensus 585 ~pteeeI~~Lls~~D~d------~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~ 658 (737)
.-+..+++.+...+-.+ ...+|. .+..+... ..+...-...+|+.||.|++|.|+..||..+
T Consensus 22 ~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~-~i~~~~fp-----------~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~a 89 (193)
T KOG0044|consen 22 KFSKKEIQQWYRGFKNECPSGRLTLEEFR-EIYASFFP-----------DGDASKYAELVFRTFDKNKDGTIDFLEFICA 89 (193)
T ss_pred CCCHHHHHHHHHHhcccCCCCccCHHHHH-HHHHHHCC-----------CCCHHHHHHHHHHHhcccCCCCcCHHHHHHH
Confidence 44566666666665443 344454 23333322 1233355778999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 659 LKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 659 L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
+..+.....++.++..|+.+|.|+||.|+++|++.++..+
T Consensus 90 ls~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 90 LSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 9988777778889999999999999999999999988755
No 206
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.31 E-value=5.8e-05 Score=89.70 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHHCCc--EEecCceEEEEEEcCC-CcEEEEEEeecc---cCeeEEEEcCEEEecCCCChhhhhhhcC
Q psy8270 448 DDARMCLAIALTATRHGA--TVANHVRVTNLIKDDK-GKVRGAHLRDEL---TGKEWDLKAKSVINATGPFTDSIRRMDD 521 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gv--e~~~nt~V~~L~~d~~-~~V~gV~~~~~~---tg~~~~I~Ad~VV~a~Gaws~~L~~~lG 521 (737)
+-..+-..|.+.+.+.|+ ++.++++|++++.++. +..+.|++.+.. +|+..+++|+.||-|-|+.|. +.+.+|
T Consensus 139 ~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~-VR~~lg 217 (634)
T PRK08294 139 NQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR-VRKAIG 217 (634)
T ss_pred CHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH-HHHhcC
Confidence 444566677777777775 7788999999987622 223456666421 344457999999999999884 445566
Q ss_pred CCcc
Q psy8270 522 GQVQ 525 (737)
Q Consensus 522 ~~lp 525 (737)
+...
T Consensus 218 i~~~ 221 (634)
T PRK08294 218 RELR 221 (634)
T ss_pred CCcc
Confidence 6443
No 207
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.26 E-value=2.6e-06 Score=75.22 Aligned_cols=69 Identities=14% Similarity=0.387 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhcCC--CCceeeHHHHHHHHH-HhCCCCC----HHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 630 EEINQYIKRFQIMDKE--RKGYVSINDIRRGLK-NFGETIS----GEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 630 ee~~~l~~~F~~fD~d--~~G~Is~~eL~~~L~-~lg~~~s----~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
.-+..+...|+.|+.. .+|+|+.+||+.+|. .++..++ +++++.+|+.+|.+++|.|+|+||+.++..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567789999999866 489999999999997 5666676 8999999999999999999999999988754
No 208
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.26 E-value=7.5e-06 Score=93.44 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=50.1
Q ss_pred eeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 445 GQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 445 g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
-++|-..+-..|.+.|++.||+++.++ |+.+..+++|.|.+|++.+ | .++.||.||=|+|..+...
T Consensus 149 yhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~---g--~~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 149 YHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDD---G--RTIEADFFIDASGRRSLLA 214 (454)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---S--EEEEESEEEE-SGGG-CCC
T ss_pred EEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECC---C--CEEEEeEEEECCCccchhh
Confidence 357888999999999999999999875 7777776578888998765 3 3699999999999866433
No 209
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.25 E-value=1.3e-05 Score=89.72 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=56.3
Q ss_pred EChHHHHHHHHHHHHH-CCcEEecCceEEEEEEcCCC-cEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcC
Q psy8270 447 QDDARMCLAIALTATR-HGATVANHVRVTNLIKDDKG-KVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDD 521 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~-~Gve~~~nt~V~~L~~d~~~-~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG 521 (737)
.-...++.+|...+++ .++++++++.+.+|..+ ++ .+.||.+.+.. ++...+.|+.||+|||..........+
T Consensus 130 ~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~~~-~~~~~~~a~~vVLATGG~g~ly~~TTN 204 (518)
T COG0029 130 ATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLNRN-GELGTFRAKAVVLATGGLGGLYAYTTN 204 (518)
T ss_pred CccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc-CCceEeEEEEecCC-CeEEEEecCeEEEecCCCcccccccCC
Confidence 3456788889888876 59999999999999998 55 56699887631 245679999999999997766544443
No 210
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.25 E-value=1.7e-05 Score=92.58 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=46.9
Q ss_pred HHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccC-eeEEEEcCEEEecCCCC-hhhhhhhcCC
Q psy8270 460 ATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTG-KEWDLKAKSVINATGPF-TDSIRRMDDG 522 (737)
Q Consensus 460 A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg-~~~~I~Ad~VV~a~Gaw-s~~L~~~lG~ 522 (737)
.++.+.+|++++.|+.|+.+ ++++++|++.....+ +...+.++.||+|+|++ ++.|+...++
T Consensus 213 ~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi 276 (542)
T COG2303 213 LKRPNLTLLTGARVRRILLE-GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI 276 (542)
T ss_pred hcCCceEEecCCEEEEEEEE-CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence 34445999999999999999 899999998764322 24456778999999975 5667666554
No 211
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.24 E-value=3.9e-05 Score=85.39 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=68.1
Q ss_pred eeEChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCCCc
Q psy8270 445 GQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQV 524 (737)
Q Consensus 445 g~Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~~l 524 (737)
+.++...+...+...+. ..++++++|+++.. + +|++.+ |+ ++.|+.||.|.|..+..... .+
T Consensus 84 ~~I~r~~f~~~l~~~l~---~~i~~~~~V~~v~~---~---~v~l~d---g~--~~~A~~VI~A~G~~s~~~~~-~~--- 145 (370)
T TIGR01789 84 RSMTSTRFHEGLLQAFP---EGVILGRKAVGLDA---D---GVDLAP---GT--RINARSVIDCRGFKPSAHLK-GG--- 145 (370)
T ss_pred eEEEHHHHHHHHHHhhc---ccEEecCEEEEEeC---C---EEEECC---CC--EEEeeEEEECCCCCCCcccc-ce---
Confidence 56666778777765443 23777999998832 2 355533 43 59999999999987543322 11
Q ss_pred cccccccceEEEEecCCCCCCCceeeecC---CCCCcEEEEeecC-CeEeeecCC
Q psy8270 525 QKICVPSSGVHIVLPGYYSPDQMGLLDPS---TSDGRVIFFLPWL-KHTIAGTTD 575 (737)
Q Consensus 525 p~~i~p~KG~~lvv~~~~~~~~~~i~~~~---~~Dgr~iy~~P~~-g~~ivG~Td 575 (737)
.+--+|..+.+..+.......+|-.. ....+++|++|.+ +..++..|.
T Consensus 146 ---~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~ 197 (370)
T TIGR01789 146 ---FQVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTY 197 (370)
T ss_pred ---eeEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEe
Confidence 33446777777766444444443222 2335789999996 577775544
No 212
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.23 E-value=4.3e-06 Score=83.93 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
..+...+...++++|.+++++++|+++..+ +++ +.|++.+ + ..+.|+.||+|+|.++
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~---~--~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTTRD---G--RTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEETT---S---EEEEEEEEE---SSC
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEEEe---c--ceeeeeeEEEeeeccC
Confidence 456667777888999999999999999998 555 7788754 3 3688999999999865
No 213
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.22 E-value=1.3e-05 Score=74.38 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy8270 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696 (737)
Q Consensus 628 s~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~ 696 (737)
.+....++..+|..+|.|++|+|+.+||..++ ....+..+..+|+.+|.|+||.|+++||...+.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 35677889999999999999999999999876 335577889999999999999999999999883
No 214
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=5.9e-05 Score=86.61 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
..+...+.+.+++.|++++.+++|+++..+ ++.+ .+++.+. +++...+.+|.||+|+|.-.+
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~~-~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTG-GKGV-SVAYTDA-DGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEc-CCEE-EEEEEeC-CCceeEEEcCEEEEccCCccC
Confidence 456667777788899999999999999876 4443 3554442 344346999999999996554
No 215
>KOG2415|consensus
Probab=98.19 E-value=1.3e-05 Score=87.52 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=57.8
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccC----------eeEEEEcCEEEecCCC---Ch
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTG----------KEWDLKAKSVINATGP---FT 513 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg----------~~~~I~Ad~VV~a~Ga---ws 513 (737)
|.-..++..|...|++.|++|+-+..+..+..+++|.|.||...|..-+ ++-.+.|+..|.|-|. -+
T Consensus 180 v~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Ls 259 (621)
T KOG2415|consen 180 VSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLS 259 (621)
T ss_pred EEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhH
Confidence 4556899999999999999999999999999887899999987542111 1235788999998875 45
Q ss_pred hhhhhhcCC
Q psy8270 514 DSIRRMDDG 522 (737)
Q Consensus 514 ~~L~~~lG~ 522 (737)
.++.+..++
T Consensus 260 kqi~kkf~L 268 (621)
T KOG2415|consen 260 KQIIKKFDL 268 (621)
T ss_pred HHHHHHhCc
Confidence 556555444
No 216
>PRK06753 hypothetical protein; Provisional
Probab=98.17 E-value=8e-05 Score=82.22 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecCCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFA 77 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~ 77 (737)
||+|||||++|+++|..|+++|++|+|+||++..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 7999999999999999999999999999998643
No 217
>PRK05868 hypothetical protein; Validated
Probab=98.17 E-value=0.00013 Score=81.09 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 799999999999999999999999999999754
No 218
>KOG0036|consensus
Probab=98.16 E-value=1.1e-05 Score=87.74 Aligned_cols=96 Identities=21% Similarity=0.376 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHhccc-----hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHH
Q psy8270 585 KPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGL 659 (737)
Q Consensus 585 ~pteeeI~~Lls~~D~d-----~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L 659 (737)
.+..+....+++..|.| +|.+|. ..+. +...++.++|+..|.++||.|+.+|+.+.|
T Consensus 47 ~~~~~~~~~l~~~~d~~~dg~vDy~eF~-~Y~~-----------------~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l 108 (463)
T KOG0036|consen 47 KPNYEAAKMLFSAMDANRDGRVDYSEFK-RYLD-----------------NKELELYRIFQSIDLEHDGKIDPNEIWRYL 108 (463)
T ss_pred CCchHHHHHHHHhcccCcCCcccHHHHH-HHHH-----------------HhHHHHHHHHhhhccccCCccCHHHHHHHH
Confidence 57778888999998777 888886 3332 222568999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 660 KNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 660 ~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
+.+|.++++++++++++.+|+++++.|+|+||...+.-.
T Consensus 109 ~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 109 KDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 999999999999999999999999999999999877644
No 219
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.11 E-value=3e-06 Score=71.16 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=31.7
Q ss_pred EECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCC
Q psy8270 47 IIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81 (737)
Q Consensus 47 IiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s 81 (737)
|||||++|+++|+.|+++|++|+|+|+++..+|..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcce
Confidence 89999999999999999999999999998887764
No 220
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.09 E-value=2.7e-05 Score=89.13 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHCCcE--EecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 449 DARMCLAIALTATRHGAT--VANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve--~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
...+...|...+.+.|+. |+++++|+++... ++ .+.|++.+. ++......+|+||+|+|.++
T Consensus 110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~-~w~V~~~~~-~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 110 HREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DG-KWRVQSKNS-GGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred HHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CC-eEEEEEEcC-CCceEEEEcCEEEEeccCCC
Confidence 456888888889999987 8999999999876 44 466766542 12223467899999999764
No 221
>KOG0044|consensus
Probab=98.09 E-value=1.3e-05 Score=80.63 Aligned_cols=98 Identities=16% Similarity=0.368 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHhccc-----hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHH
Q psy8270 587 TEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKN 661 (737)
Q Consensus 587 teeeI~~Lls~~D~d-----~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~ 661 (737)
.....+.++..+|.+ +|.||+ ..++..... +.+ +.++.+|+.||.|++|+|+..|+-.+++.
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi-~als~~~rG----------t~e--ekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFI-CALSLTSRG----------TLE--EKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHH-HHHHHHcCC----------cHH--HHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 445667777777777 788888 345433322 122 56788899999999999999999888876
Q ss_pred h----CC-------CCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 662 F----GE-------TISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 662 l----g~-------~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
+ +. ....+.+..+|+++|.|+||.|+++||+..+..
T Consensus 129 i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 129 IYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 4 31 223566889999999999999999999988864
No 222
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.08 E-value=4.3e-05 Score=85.52 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=47.1
Q ss_pred EChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 447 QDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
+.-..+...|.+.+.+. |++++++++|+++..+ ++++ .|++.+..+ +.++.||.||-|-|.+|.-
T Consensus 104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v-~v~~~~~~~--~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSI-TATIIRTNS--VETVSAAYLIACDGVWSML 169 (400)
T ss_pred ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCce-EEEEEeCCC--CcEEecCEEEECCCccHhH
Confidence 45567888888877654 8999999999999876 4443 344443212 2358999999999999854
No 223
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.08 E-value=7.4e-05 Score=85.01 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCC--CChhhh-hhhcCCCc
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG--PFTDSI-RRMDDGQV 524 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~G--aws~~L-~~~lG~~l 524 (737)
...+...+.+.+++.|++++++++|+.++.. ++. ..+++.+ ++...+.+|.|++|+| +.++.| ++.+|+.+
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~-~~~-v~v~~~~---g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~ 286 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKK-DDG-VLVTLED---GEGGTIEADAVLVAIGRKPNTDGLGLENAGVEL 286 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEec-CCe-EEEEEec---CCCCEEEeeEEEEccCCccCCCCCChhhcCceE
Confidence 3567788888888888999999999999887 333 4566655 3333689999999999 455544 45555543
No 224
>PLN02785 Protein HOTHEAD
Probab=98.07 E-value=2.5e-05 Score=91.79 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=46.8
Q ss_pred HHHHHCCcEEecCceEEEEEEcCC---CcEEEEEEeecccCeeEEE-----EcCEEEecCCC-ChhhhhhhcCCC
Q psy8270 458 LTATRHGATVANHVRVTNLIKDDK---GKVRGAHLRDELTGKEWDL-----KAKSVINATGP-FTDSIRRMDDGQ 523 (737)
Q Consensus 458 ~~A~~~Gve~~~nt~V~~L~~d~~---~~V~gV~~~~~~tg~~~~I-----~Ad~VV~a~Ga-ws~~L~~~lG~~ 523 (737)
..+.+.+++|++++.|++|..+++ ++++||++.+.. |+..++ .++.||+|+|+ .++.|+...|+-
T Consensus 228 ~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~-g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIG 301 (587)
T PLN02785 228 AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDEN-GNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIG 301 (587)
T ss_pred hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECC-CceEEEEeecccCceEEecccccCCHHHHHHcCCC
Confidence 445567899999999999998732 379999987642 332222 23679999997 667777766664
No 225
>KOG1335|consensus
Probab=97.97 E-value=0.00024 Score=77.20 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCC--CChhhh-hhhcCCC
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG--PFTDSI-RRMDDGQ 523 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~G--aws~~L-~~~lG~~ 523 (737)
...+..+.-+.++..|.++..+|+|.....+.+| ..-|++.+..+++..++.||.+.+|.| +++..| ++..|+.
T Consensus 251 D~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~ 327 (506)
T KOG1335|consen 251 DGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIE 327 (506)
T ss_pred CHHHHHHHHHHHHhcCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccc
Confidence 3567777777778899999999999999998555 456778877788888999999999999 677665 2344443
No 226
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.96 E-value=9.3e-05 Score=84.31 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=37.1
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCe-EEEEeecCCCCCC
Q psy8270 40 GEEFDVLIIGGGATGSGCALDAVTRGLK-TALVELDDFASGT 80 (737)
Q Consensus 40 ~~~~dvvIiG~G~~G~~~A~~La~~G~~-V~vle~~~~~~g~ 80 (737)
.+.+||+|||||..|+++|++|.++|.. ++|+||++-.+|+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~ 47 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT 47 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCc
Confidence 4679999999999999999999999998 9999998766664
No 227
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.94 E-value=0.00011 Score=78.39 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 40 GEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 40 ~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
..++||+|||+|.+|+.+|.+||.+|.+|+|+|+..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 357999999999999999999999999999999963
No 228
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.92 E-value=5.4e-05 Score=67.01 Aligned_cols=68 Identities=12% Similarity=0.429 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhcCCCCceeeHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKN-----FGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 630 ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~-----lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
.-+..+..+|+.|-. +++.++..||+.++++ +....+++.++++|+.+|.|+||.|+|+||+.++..+
T Consensus 5 ~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 445778999999984 4569999999999976 3445567889999999999999999999999998754
No 229
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.87 E-value=0.00014 Score=84.42 Aligned_cols=57 Identities=28% Similarity=0.318 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
..+...+...+++.|++++++++|+++..+ ++ .+.|++.+ ++ .+.++.||+|||+..
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~-~~-~~~V~~~~---g~--~i~a~~vViAtG~~~ 322 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPA-AG-LIEVELAN---GA--VLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CC-eEEEEECC---CC--EEEcCEEEECCCCCc
Confidence 356667777788899999999999999876 33 34455432 32 589999999999944
No 230
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.85 E-value=0.00074 Score=76.45 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecC
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINAT 509 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~ 509 (737)
..+.+++.+.+.=.|+.+..+..|.++..+++|++.||.. .|+ +++|++||...
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s----~ge--~v~~k~vI~dp 285 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS----EGE--VVKAKKVIGDP 285 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE----TTE--EEEESEEEEEG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec----CCE--EEEcCEEEECC
Confidence 4899999999888999999999999999865788888863 233 69999999543
No 231
>KOG0038|consensus
Probab=97.85 E-value=6.4e-05 Score=71.02 Aligned_cols=84 Identities=19% Similarity=0.403 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhC-CCCCHHHH----HHHHH
Q psy8270 602 EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFG-ETISGEEL----HEILR 676 (737)
Q Consensus 602 ~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg-~~~s~~ev----~~i~~ 676 (737)
+|++|+ .+.+.+.... +.+ -+..-+|++||-|++++|...+|..++.++- ..++++|+ ++++.
T Consensus 89 sfddFl-DmfSV~sE~A----------Prd-lK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvie 156 (189)
T KOG0038|consen 89 SFDDFL-DMFSVFSEMA----------PRD-LKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIE 156 (189)
T ss_pred cHHHHH-HHHHHHHhhC----------hHH-hhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 899999 5666443321 122 3466789999999999999999999999984 56777776 56788
Q ss_pred HhCCCCCCceeHHHHHHHHHh
Q psy8270 677 EIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 677 ~~D~d~dG~I~feEF~~ll~~ 697 (737)
+.|.++||+++|.||-+++.+
T Consensus 157 EAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 157 EADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HhcCCCCCcccHHHHHHHHHh
Confidence 899999999999999998875
No 232
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=0.00025 Score=83.32 Aligned_cols=68 Identities=22% Similarity=0.218 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
....++..|.+.+.+.|+++++++.+++|+.+++|+|.||...+..+++...|.|+.||+|||.++..
T Consensus 124 tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 124 TGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred CHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 35678999999899999999999999999986478999998765446776789999999999998864
No 233
>KOG0029|consensus
Probab=97.78 E-value=2.4e-05 Score=90.04 Aligned_cols=42 Identities=26% Similarity=0.448 Sum_probs=38.9
Q ss_pred cCCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 39 ~~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
..+..+|||||||++|++||..|...|.+|+|+|.++..||-
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 446789999999999999999999999999999999988875
No 234
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.76 E-value=0.0037 Score=69.84 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRM 519 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~ 519 (737)
.-..++..|.+.+.++|++++++|+|++++.+ ++.+.+|.+.+ | ..|.|++||+|.|=-+..+..+
T Consensus 171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~---g--~~i~~~~vvlA~Grsg~dw~~~ 236 (486)
T COG2509 171 ILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTK---G--EEIEADYVVLAPGRSGRDWFEM 236 (486)
T ss_pred chHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccC---C--cEEecCEEEEccCcchHHHHHH
Confidence 45678899999999999999999999999998 66677777654 3 3699999999999766665544
No 235
>KOG0040|consensus
Probab=97.75 E-value=0.00021 Score=86.97 Aligned_cols=96 Identities=21% Similarity=0.411 Sum_probs=84.0
Q ss_pred cccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCC-------HHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy8270 622 KIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETIS-------GEELHEILREIDSNMNGQVELDEYLQM 694 (737)
Q Consensus 622 ~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s-------~~ev~~i~~~~D~d~dG~I~feEF~~l 694 (737)
.=...++++++.++.-+|+.||++.+|.++..+|+.||+++|++++ +.++++++.-+|.+.+|.|+.+||+.+
T Consensus 2242 rn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~af 2321 (2399)
T KOG0040|consen 2242 RNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAF 2321 (2399)
T ss_pred hccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHH
Confidence 3345789999999999999999999999999999999999998773 337899999999999999999999999
Q ss_pred HHhhcCCC-CCHHHHHHHHHHhCC
Q psy8270 695 MSAIKSGH-VAYSRFAKMAEMEEE 717 (737)
Q Consensus 695 l~~~~~G~-is~~elk~~l~~lg~ 717 (737)
|..+.+.. .+.++|..+|..|..
T Consensus 2322 mi~~ETeNI~s~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2322 MISKETENILSSEEIEDAFRALDA 2345 (2399)
T ss_pred HHhcccccccchHHHHHHHHHhhc
Confidence 99886544 455789999998855
No 236
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=8.3e-05 Score=84.22 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=44.3
Q ss_pred eeEChHHHHHHHHHHHHHC-CcEEecCceEEEEEEcCCC-cEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 445 GQQDDARMCLAIALTATRH-GATVANHVRVTNLIKDDKG-KVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 445 g~Vdp~~~v~al~~~A~~~-Gve~~~nt~V~~L~~d~~~-~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
+++|-..+-..+...+... +..++ ...|++|+.+ ++ +|+||.+.+ | ..+.|+.||++||-|-..
T Consensus 95 aQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e-~~~~v~GV~t~~---G--~~~~a~aVVlTTGTFL~G 160 (621)
T COG0445 95 AQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVE-EGQRVVGVVTAD---G--PEFHAKAVVLTTGTFLRG 160 (621)
T ss_pred hhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhc-CCCeEEEEEeCC---C--CeeecCEEEEeecccccc
Confidence 4455555656666555444 55665 5678888887 45 699998655 3 369999999999987544
No 237
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.71 E-value=0.00012 Score=66.74 Aligned_cols=69 Identities=25% Similarity=0.406 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 626 ~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
.++++|.+++..+|+..|. .+|.|+.++.+.+|...+ ++.+.+.+|+...|.+++|.++++||+..|.-
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4677899999999999985 679999999999999866 88899999999999999999999999987764
No 238
>PLN02268 probable polyamine oxidase
Probab=97.69 E-value=3.7e-05 Score=86.91 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=36.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s 81 (737)
.+|||||||++||+||+.|.++|++|+|+|+++..+|-.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 379999999999999999999999999999999888864
No 239
>PLN02576 protoporphyrinogen oxidase
Probab=97.68 E-value=4.3e-05 Score=87.94 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhc-CCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTR-GLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~-G~~V~vle~~~~~~g~ 80 (737)
..+||+|||||++||++|++|+++ |++|+|+|+.+..+|-
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 457999999999999999999999 9999999999877775
No 240
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.65 E-value=4.4e-05 Score=86.67 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccc
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKL 87 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~ 87 (737)
++|||||||||.+|+++|++|+++|++|+|+|+++..-|.+..+.|.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gc 48 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGC 48 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccc
Confidence 36999999999999999999999999999999975433434455543
No 241
>PRK07236 hypothetical protein; Provisional
Probab=97.65 E-value=6.8e-05 Score=83.50 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=35.1
Q ss_pred ccCCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 38 QSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 38 ~~~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
.+.+..||+|||||++|+++|+.|+++|++|+|+||.+.
T Consensus 2 ~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 2 THMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 345678999999999999999999999999999999753
No 242
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.63 E-value=4.7e-05 Score=86.00 Aligned_cols=38 Identities=37% Similarity=0.523 Sum_probs=34.7
Q ss_pred cEEEECCChhHHHHHHHHHhcC--CeEEEEeecCCCCCCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRG--LKTALVELDDFASGTS 81 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G--~~V~vle~~~~~~g~s 81 (737)
+|+|||||++||+||++|+++| ++|+|+|+.+..||-.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 5999999999999999999988 8999999998887753
No 243
>PLN02964 phosphatidylserine decarboxylase
Probab=97.61 E-value=0.00018 Score=84.38 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 627 ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
.++++...+.++|+.+|.|++|.|+.+||..++..++...++++++++|+.+|.|++|.|+++||..++..
T Consensus 173 pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 173 PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 45666667999999999999999999999999999998889999999999999999999999999999987
No 244
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.61 E-value=5.2e-05 Score=86.47 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
..+...+.+.+++.|++++.++.|+++..+ .+....|++.+ ++ ..+.+|.||+|+|.-.+.
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~-~~~~~~v~~~~---g~-~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKT-VEGKLVIHFED---GK-SIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEe-CCceEEEEECC---Cc-EEEEcCEEEEeeCCCcCc
Confidence 346666777788899999999999999865 33223344432 32 369999999999975543
No 245
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.58 E-value=6.4e-05 Score=85.50 Aligned_cols=39 Identities=33% Similarity=0.417 Sum_probs=36.0
Q ss_pred ccEEEECCChhHHHHHHHHHhc----CCeEEEEeecCCCCCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTR----GLKTALVELDDFASGTS 81 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~----G~~V~vle~~~~~~g~s 81 (737)
.||+|||||++||++|++|+++ |++|+|+|+++..+|-.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 6899999999999999999999 99999999998877753
No 246
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.57 E-value=0.00033 Score=81.54 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHHCCc--EEecCceEEEEEEcCCC---cEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 448 DDARMCLAIALTATRHGA--TVANHVRVTNLIKDDKG---KVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gv--e~~~nt~V~~L~~d~~~---~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
....+...|...|.+.|. .|++||+|+++...++. .-|.|+... +++..+-..|.||+|+|.++.-
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~--~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN--DGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT--TTEEEEEEECEEEEEE-SSSCE
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec--CCeEEEEEeCeEEEcCCCcCCC
Confidence 345777888888888876 78999999999875332 246676543 4554455689999999987633
No 247
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.56 E-value=0.0045 Score=70.32 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=34.8
Q ss_pred cccEEEECCChhHHHHHHHHHhc----CCeEEEEeecCCCCCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTR----GLKTALVELDDFASGTS 81 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~----G~~V~vle~~~~~~g~s 81 (737)
.-++-|||||+++|++|.+|.+. |-+|.|+|+.+..+|+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 34688999999999999999986 66899999998887764
No 248
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.54 E-value=8.2e-05 Score=84.89 Aligned_cols=40 Identities=30% Similarity=0.593 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
..|||+|||||.+|+++|++|+++|++|+|+|++...+|+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~ 43 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG 43 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccc
Confidence 4699999999999999999999999999999997555554
No 249
>PRK06370 mercuric reductase; Validated
Probab=97.54 E-value=8.5e-05 Score=84.94 Aligned_cols=40 Identities=30% Similarity=0.508 Sum_probs=35.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
.+|||||||||.+|+++|..|+++|++|+|+|++.+++++
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c 43 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTC 43 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCce
Confidence 4699999999999999999999999999999997655444
No 250
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.51 E-value=9.9e-05 Score=82.19 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=35.1
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
+||+|||||++|+++|++|++.|.+|+|+|+++..+|.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 79999999999999999999999999999998776664
No 251
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.50 E-value=0.00015 Score=50.51 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=16.6
Q ss_pred HHHHHhhhcCCCCceeeHHHHHHHHHH
Q psy8270 635 YIKRFQIMDKERKGYVSINDIRRGLKN 661 (737)
Q Consensus 635 l~~~F~~fD~d~~G~Is~~eL~~~L~~ 661 (737)
++++|+.||+|++|+|+.+||..++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666666554
No 252
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.49 E-value=0.00011 Score=83.91 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
..+...+.+.+++.|++++.+++|+++..+ ++++. ++.. +++...+.+|.||+|+|...+
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~---~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQVV-YENK---GGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEe---CCcEEEEEeCEEEEecCCccc
Confidence 345666777788899999999999999876 45443 3332 233346999999999997554
No 253
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.48 E-value=0.0001 Score=83.98 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=37.3
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccce
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLI 88 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~~ 88 (737)
+|||+|||||.+|+++|..|+++|++|+|+|++. .+|+ ..+.|.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~GG~-c~~~gci 46 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR-VGGT-CVIRGCV 46 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc-cCce-eecCCcC
Confidence 6999999999999999999999999999999964 4443 3454443
No 254
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.48 E-value=0.00011 Score=83.31 Aligned_cols=45 Identities=31% Similarity=0.427 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecC-CCCCCCcCccc
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDD-FASGTSSRSTK 86 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~-~~~g~s~~~~~ 86 (737)
++|||||||||.+|+++|..|+++|++|+|+|+++ ..+|+ ..+.|
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~-c~~~g 47 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGT-CINIG 47 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCccccee-eecCc
Confidence 46999999999999999999999999999999985 33443 33444
No 255
>KOG4223|consensus
Probab=97.46 E-value=0.00029 Score=74.91 Aligned_cols=106 Identities=19% Similarity=0.322 Sum_probs=82.6
Q ss_pred HHHHHHHHhhhcCCCCceeeHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh------------
Q psy8270 632 INQYIKRFQIMDKERKGYVSINDIRRGLKNFG-ETISGEELHEILREIDSNMNGQVELDEYLQMMSAI------------ 698 (737)
Q Consensus 632 ~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg-~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~------------ 698 (737)
+..-+..|+.-|.|++|.++.+||...|.=-. ..+..--|++.+...|+|+||.|+++||+.=|-..
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~ 241 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLT 241 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccc
Confidence 34456689999999999999999998765322 22333446788899999999999999999755332
Q ss_pred ------------cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCCC
Q psy8270 699 ------------KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGGL 737 (737)
Q Consensus 699 ------------~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG~ 737 (737)
++|+++.+|+++.+.--+....+.+..=++. .|.|.||.
T Consensus 242 Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~k 293 (325)
T KOG4223|consen 242 EREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGK 293 (325)
T ss_pred cHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCcccc
Confidence 5899999999987766566677778877888 99999873
No 256
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.46 E-value=0.00069 Score=73.01 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s 81 (737)
..-+|.|||+|++||+|||.|+++ ++|++.|.++..+|.+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcc
Confidence 456799999999999999999986 5999999999888865
No 257
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00011 Score=83.23 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=35.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
.|+|+|||++||+||++|+.+|++|+|+|++++.+|-
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 4899999999999999999999999999999998874
No 258
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.44 E-value=0.00013 Score=83.39 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
..+...+.+.+++.|++++++++|+++..+ ++.+ .+++.+ +++...+.+|.||+|+|...+
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~--gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQT-DDGV-TVTLED--GGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEEe--CCeeEEEEeCEEEEeeCCccC
Confidence 356666777788999999999999999876 4433 344433 233346999999999997654
No 259
>PRK14694 putative mercuric reductase; Provisional
Probab=97.43 E-value=0.00015 Score=83.22 Aligned_cols=47 Identities=28% Similarity=0.488 Sum_probs=39.5
Q ss_pred cCCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccc
Q psy8270 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKL 87 (737)
Q Consensus 39 ~~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~ 87 (737)
+..+|||||||||.+|+++|..|++.|.+|+|+|++.+ +|+ ..|.|-
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~-GGt-c~n~Gc 49 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTI-GGT-CVNIGC 49 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccc-ccc-eecCCc
Confidence 45789999999999999999999999999999999753 443 456554
No 260
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.42 E-value=0.00015 Score=76.92 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=41.7
Q ss_pred HHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 456 IALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 456 l~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
+...+++. |++++.++.++++..+ +++.++++.+..+++...+.+|.||+|+|.-.
T Consensus 182 ~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 182 LLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred HHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 33445666 9999999999999865 46777776553345556799999999999644
No 261
>PRK06116 glutathione reductase; Validated
Probab=97.42 E-value=0.00013 Score=83.19 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
..+...+...+++.|++++.+++|+++..++++.+ .|++.+ ++ .+.+|.||+|+|.-.
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~---g~--~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLED---GE--TLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcC---Cc--EEEeCEEEEeeCCCc
Confidence 34666777778899999999999999987523333 344432 33 589999999999644
No 262
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.41 E-value=0.00049 Score=54.11 Aligned_cols=50 Identities=18% Similarity=0.382 Sum_probs=41.8
Q ss_pred eeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 649 YVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 649 ~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
+++.+|++.+|+.++..+++..+..+|+++|.+++|+++.+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999988753
No 263
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.40 E-value=0.00016 Score=82.96 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
..+...+.+.+++.|++++++++|+++..+.++++..+...+ |+...+.+|.||+|+|.-.+
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~---g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN---GEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC---CceEEEEeCEEEEeeCCccC
Confidence 456666777788899999999999999751124444443332 44446999999999997543
No 264
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.39 E-value=0.00016 Score=82.92 Aligned_cols=46 Identities=39% Similarity=0.504 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccc
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKL 87 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~ 87 (737)
++|||+|||||.+|+++|..|+++|++|+|+|+.+..+|+ ..+.|-
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~-c~~~gc 47 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGT-CLNVGC 47 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeee-eccCcc
Confidence 3599999999999999999999999999999985444554 244443
No 265
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.38 E-value=0.00026 Score=49.34 Aligned_cols=28 Identities=36% Similarity=0.752 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 670 ELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 670 ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
|++++|+.+|.|+||.|+|+||+.+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5889999999999999999999999875
No 266
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.37 E-value=0.00018 Score=82.35 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
..+...+.+.+++.|++++.+++|+++..+ ++. ..+++.. .+++...+.+|.||+|+|.-.+
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSK-VTVTVSK-KDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCe-EEEEEEe-cCCCeEEEEeCEEEECcCcccC
Confidence 346667777788899999999999999765 333 3344431 1243346999999999996443
No 267
>PLN02676 polyamine oxidase
Probab=97.36 E-value=0.00021 Score=82.37 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=39.6
Q ss_pred hhccCCcccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCCCCCC
Q psy8270 36 SLQSGEEFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFASGTS 81 (737)
Q Consensus 36 ~~~~~~~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~~g~s 81 (737)
+|.....+||+|||||++|++||++|+++|. +|+|+|+++..+|..
T Consensus 20 ~~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 20 AMDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM 66 (487)
T ss_pred hhcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence 3444457899999999999999999999998 599999998877754
No 268
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.36 E-value=0.00018 Score=82.18 Aligned_cols=36 Identities=33% Similarity=0.560 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFAS 78 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~ 78 (737)
|||||||||.+|+++|..|+++|++|+|+|++.+++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG 36 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGG 36 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccC
Confidence 799999999999999999999999999999987543
No 269
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.35 E-value=0.00017 Score=82.35 Aligned_cols=38 Identities=32% Similarity=0.508 Sum_probs=33.9
Q ss_pred cEEEECCChhHHHHHHHHHhc------CCeEEEEeecCCCCCCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTR------GLKTALVELDDFASGTS 81 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~------G~~V~vle~~~~~~g~s 81 (737)
+|+|||||++||++|++|++. |.+|+|+|+++..+|-.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 599999999999999999986 47999999998887753
No 270
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.34 E-value=0.00021 Score=81.59 Aligned_cols=39 Identities=41% Similarity=0.582 Sum_probs=34.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
++|||||||||.+|+++|..|++.|++|+|+|++ ..+|+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~GG~ 40 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGGT 40 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-ccccc
Confidence 4699999999999999999999999999999994 34443
No 271
>KOG2614|consensus
Probab=97.34 E-value=0.0003 Score=77.54 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=31.8
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
+.+|||||||++|+++|+.|.+.|++|+|+|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4679999999999999999999999999999963
No 272
>PTZ00367 squalene epoxidase; Provisional
Probab=97.31 E-value=0.00019 Score=84.10 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
..+||+|||||++|+++|+.|+++|++|+|+||+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 57999999999999999999999999999999975
No 273
>PTZ00058 glutathione reductase; Provisional
Probab=97.31 E-value=0.00024 Score=83.24 Aligned_cols=47 Identities=32% Similarity=0.492 Sum_probs=38.7
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccce
Q psy8270 40 GEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLI 88 (737)
Q Consensus 40 ~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~~ 88 (737)
..+|||||||||.+|.++|..|++.|.+|+|||++.+ +| +.-|.|.+
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~-GG-tCln~GCi 92 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYL-GG-TCVNVGCV 92 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccc-cc-cccccCCC
Confidence 3689999999999999999999999999999999743 33 33555544
No 274
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.31 E-value=0.00024 Score=81.59 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=37.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCccc
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTK 86 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~ 86 (737)
..|||||||||.+|+.+|..|+++|++|+|+|+.+..+|+ ..+.|
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~-c~n~g 47 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGV-CLNVG 47 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccc-ccCCC
Confidence 3699999999999999999999999999999997555554 34544
No 275
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.30 E-value=0.00035 Score=49.19 Aligned_cols=30 Identities=23% Similarity=0.677 Sum_probs=26.0
Q ss_pred HHHHHHhhhcCCCCceeeHHHHHHHHH-HhC
Q psy8270 634 QYIKRFQIMDKERKGYVSINDIRRGLK-NFG 663 (737)
Q Consensus 634 ~l~~~F~~fD~d~~G~Is~~eL~~~L~-~lg 663 (737)
+++.+|+.||.|++|+|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999999 675
No 276
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.30 E-value=0.00022 Score=80.76 Aligned_cols=37 Identities=35% Similarity=0.568 Sum_probs=34.3
Q ss_pred cEEEECCChhHHHHHHHHHhcC--CeEEEEeecCCCCCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRG--LKTALVELDDFASGT 80 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G--~~V~vle~~~~~~g~ 80 (737)
.++|||||++||++||+|++++ ..|+|+|+++..+|-
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCce
Confidence 4899999999999999999999 999999999877775
No 277
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.29 E-value=0.00025 Score=83.15 Aligned_cols=37 Identities=41% Similarity=0.696 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFA 77 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~ 77 (737)
..|||||||||.+|+++|.+|+++|++|+|+|++.++
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~G 39 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFG 39 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 3599999999999999999999999999999997543
No 278
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.28 E-value=0.016 Score=65.06 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhc
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMD 520 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~l 520 (737)
.+.++.....+.++++|+++++++.|+++..+ +|++.+ ++. .|.++.||-|+|.-++.+.+.+
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKD---GEE-EIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEcc---CCe-eEecCEEEEcCCCcCChhhhhc
Confidence 36678887888889999999999999999766 566654 332 5999999999999999998875
No 279
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00028 Score=76.43 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=43.9
Q ss_pred HHHHHHHC-CcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh-hhhhhc
Q psy8270 456 IALTATRH-GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD-SIRRMD 520 (737)
Q Consensus 456 l~~~A~~~-Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~-~L~~~l 520 (737)
+.+.++++ .++++++++++.+.-+ + +.+|++.+.. ++...+.++.|.++.|.-.+ .+...+
T Consensus 184 ~~~~l~~~~~i~~~~~~~i~ei~G~-~--v~~v~l~~~~-~~~~~~~~~gvf~~iG~~p~~~~~~~~ 246 (305)
T COG0492 184 LVERLKKNVKIEVLTNTVVKEILGD-D--VEGVVLKNVK-GEEKELPVDGVFIAIGHLPNTELLKGL 246 (305)
T ss_pred HHHHHHhcCCeEEEeCCceeEEecC-c--cceEEEEecC-CceEEEEeceEEEecCCCCchHHHhhc
Confidence 44455555 8999999999999876 3 7889888732 55557899999999996443 343333
No 280
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.25 E-value=0.013 Score=66.46 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCC
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDG 522 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~ 522 (737)
..+...+.+.++++|++++.+++|+++..+ .|++.+ |+ .+.+|.||.|+|.-.+.+.+.+++
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~---g~--~i~~d~vi~~~G~~~~~~~~~~~l 289 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKD---GE--VIPTGLVVWSTGVGPGPLTKQLKV 289 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECC---CC--EEEccEEEEccCCCCcchhhhcCC
Confidence 356666777788999999999999998643 355543 43 599999999999776666666554
No 281
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00036 Score=77.96 Aligned_cols=42 Identities=29% Similarity=0.482 Sum_probs=39.1
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCC
Q psy8270 40 GEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81 (737)
Q Consensus 40 ~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s 81 (737)
.+.+||||||+|.+||++|+.|.+.|++|+|+|.++.++|-+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCcee
Confidence 578999999999999999999999999999999998888754
No 282
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.21 E-value=0.00037 Score=72.92 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASG 79 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g 79 (737)
.+|+|||+||.|++||+.|...|.+|+|+||+.=.+|
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence 3699999999999999999999999999999753333
No 283
>PLN02568 polyamine oxidase
Probab=97.21 E-value=0.00036 Score=81.40 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=36.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcC-----CeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRG-----LKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G-----~~V~vle~~~~~~g~ 80 (737)
+..||||||||++|++||++|++.| ++|+|+|+++..+|.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 3579999999999999999999887 899999999887775
No 284
>PRK10262 thioredoxin reductase; Provisional
Probab=97.19 E-value=0.00042 Score=75.16 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecc-cCeeEEEEcCEEEecCCCChhh
Q psy8270 452 MCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDEL-TGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 452 ~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~-tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
+...+.+.+++.|+++++++.|+++..+ ++++.+|++.+.. +++...+.+|.||+|+|.-.+.
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~ 250 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNT 250 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccCh
Confidence 4455666677889999999999999766 5567788876521 1233469999999999975544
No 285
>KOG4223|consensus
Probab=97.18 E-value=0.00091 Score=71.28 Aligned_cols=107 Identities=18% Similarity=0.320 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh------------
Q psy8270 631 EINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI------------ 698 (737)
Q Consensus 631 e~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~------------ 698 (737)
....+..+|..+|.+++|+|+.+||+..+.......-..++.+-+..+|.+.||.|+|+|+...+-..
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 44678899999999999999999999888776545556677888899999999999999998766531
Q ss_pred ---------------------cCCCCCHHHHHHHHHHhCC-cCCHHHHHHHHc-cccCCCCC
Q psy8270 699 ---------------------KSGHVAYSRFAKMAEMEEE-KHEKEILKKQIS-VERSGGGL 737 (737)
Q Consensus 699 ---------------------~~G~is~~elk~~l~~lg~-~ls~~el~~~i~-~D~ngDG~ 737 (737)
++|.++.+||...+---.. .+.+-=+.+-+. +|+||||+
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~ 216 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGK 216 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCc
Confidence 3677777777665532211 122222333333 89999985
No 286
>PRK13748 putative mercuric reductase; Provisional
Probab=97.16 E-value=0.00038 Score=81.50 Aligned_cols=45 Identities=29% Similarity=0.467 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccc
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKL 87 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~ 87 (737)
.+|||||||||.+|+++|..|++.|.+|+|+|++. .+|+ ..+.|-
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~-~GG~-c~n~gc 141 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT-IGGT-CVNVGC 141 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc-ceee-ccccCc
Confidence 46999999999999999999999999999999974 3443 445543
No 287
>KOG0046|consensus
Probab=97.15 E-value=0.0011 Score=74.27 Aligned_cols=74 Identities=28% Similarity=0.587 Sum_probs=65.8
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCC---CCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 624 PINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGET---ISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 624 ~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~---~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
..+++.+|+.++++.|...| |++|+++..++..++.+.+.. +..+++++++.+.+.|.+|+|+|+||+.++..+
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 34688999999999999999 999999999999999997643 347889999999999999999999999977554
No 288
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.13 E-value=0.00044 Score=77.76 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=32.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFA 77 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~ 77 (737)
-||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 48999999999999999999999999999987543
No 289
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.13 E-value=0.00045 Score=77.15 Aligned_cols=72 Identities=21% Similarity=0.166 Sum_probs=49.9
Q ss_pred HHHHHHHHHH-HCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCC----hhhhhhhcCCCcc
Q psy8270 452 MCLAIALTAT-RHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF----TDSIRRMDDGQVQ 525 (737)
Q Consensus 452 ~v~al~~~A~-~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaw----s~~L~~~lG~~lp 525 (737)
+..-+....+ +.|++++. -++-.+...++++ ..|+..|.++|+...+.+|.||+++|.- +..+.+.+|+...
T Consensus 416 ~yEefY~~~Q~~~gV~fIR-Grvaei~e~p~~~-l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~ 492 (622)
T COG1148 416 DYEEFYVRSQEDYGVRFIR-GRVAEIAEFPKKK-LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQD 492 (622)
T ss_pred cHHHHHHhhhhhhchhhhc-CChHHheeCCCCe-eEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccC
Confidence 3333444444 78999985 4566666654555 4677888888888889999999999953 4567777776543
No 290
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.12 E-value=0.00056 Score=73.13 Aligned_cols=39 Identities=33% Similarity=0.481 Sum_probs=34.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
.+|++|||||+.|+.+|..|++.|.+|+||||++-.+|.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 389999999999999999999999999999998765554
No 291
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.07 E-value=0.00059 Score=84.22 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=36.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||||.+|+++|++|+++|++|+|+|+.+..+|.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~ 575 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV 575 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCce
Confidence 4579999999999999999999999999999998766554
No 292
>KOG0377|consensus
Probab=97.06 E-value=0.0014 Score=71.81 Aligned_cols=66 Identities=27% Similarity=0.570 Sum_probs=59.4
Q ss_pred HHHHHHHhhhcCCCCceeeHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 633 NQYIKRFQIMDKERKGYVSINDIRRGLKNF----GETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 633 ~~l~~~F~~fD~d~~G~Is~~eL~~~L~~l----g~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
..|..+|+..|.|++|.|+.+||+.+.+-+ ...++++++-++-..+|.|+||.|+++||+..++-.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 347889999999999999999999998875 467889999999999999999999999999988643
No 293
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.04 E-value=0.00064 Score=78.43 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
..+...+.+.+++.|+++++++.|+++..+ ++....|++.+ ++ .+.+|.||+|+|.-.+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~---g~--~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN-ADGSKHVTFES---GK--TLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCceEEEEEcC---CC--EEEcCEEEEeeCCCcC
Confidence 466677778888999999999999999875 33334455432 32 5999999999996544
No 294
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.04 E-value=0.00089 Score=79.54 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=33.6
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 40 GEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 40 ~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.+..+|+|||||++|+++|+.|+++|++|+|+||+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 356899999999999999999999999999999975
No 295
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.03 E-value=0.00068 Score=81.94 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=37.5
Q ss_pred CCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 40 GEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 40 ~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
....+|+|||||++|+++|+.|+++|++|+|+|+++..+|.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 35688999999999999999999999999999999887775
No 296
>PLN02507 glutathione reductase
Probab=97.02 E-value=0.00069 Score=78.44 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
..+...+.+.+++.|+++++++.|+++..+ ++++ .|+.. +++ .+.+|.|++|+|.-.+
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~---~g~--~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITD---HGE--EFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEEC---CCc--EEEcCEEEEeecCCCC
Confidence 356666777788899999999999999865 3332 23322 232 5999999999996544
No 297
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.99 E-value=0.00073 Score=80.49 Aligned_cols=47 Identities=40% Similarity=0.594 Sum_probs=38.1
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecC-CCCCCCcCcccce
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDD-FASGTSSRSTKLI 88 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~-~~~g~s~~~~~~~ 88 (737)
.+|||||||||..|..+|..++++|.+|+|+|++. ..+| +.-+.|-+
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGG-tCvn~GCi 162 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGG-TCVNVGCI 162 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccc-ceeEeCCc
Confidence 37899999999999999999999999999999752 3344 34555544
No 298
>PRK12831 putative oxidoreductase; Provisional
Probab=96.99 E-value=0.00082 Score=77.09 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=35.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...||+|||||.+|+++|++|+++|++|+|+|+.+..+|.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~ 178 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGV 178 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCe
Confidence 4579999999999999999999999999999997765553
No 299
>PRK14727 putative mercuric reductase; Provisional
Probab=96.96 E-value=0.00074 Score=77.69 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccc
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKL 87 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~ 87 (737)
..||+||||||.+|+++|..|++.|.+|+|+|+++..+|+ ..+.|.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~-c~n~Gc 60 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGC-CVNVGC 60 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeE-eccccc
Confidence 4699999999999999999999999999999998555554 445543
No 300
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.94 E-value=0.00085 Score=66.95 Aligned_cols=32 Identities=41% Similarity=0.683 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
||||||||.+|+++|.+|++.|.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999996643
No 301
>KOG0377|consensus
Probab=96.93 E-value=0.016 Score=63.89 Aligned_cols=104 Identities=11% Similarity=0.101 Sum_probs=56.6
Q ss_pred CCcEEEEeecCCeEeeecCCCCCCCCCCCCCCHHHHHHHHHHhccc-hhhHHHHHHHHHHhhhhccccccCCCCHHHHHH
Q psy8270 556 DGRVIFFLPWLKHTIAGTTDLPCDVTHHPKPTEDEIMFILQEKQLK-EASDFLANEMGQMVNRASRDKIPINLTKEEINQ 634 (737)
Q Consensus 556 Dgr~iy~~P~~g~~ivG~Tde~~~~~~d~~pteeeI~~Lls~~D~d-~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~ 634 (737)
|+.++-+..-.+.+-+|+....+.. .+...++..+++...+.... .+++-+..+....++....+.+ .-..+
T Consensus 393 d~kvlTiFSASNYYe~GSNrGAYik-l~~~~~PhfvQY~a~k~t~~~tlrqR~~~vEeSAlk~Lrerl~------s~~sd 465 (631)
T KOG0377|consen 393 DNKVLTIFSASNYYEIGSNRGAYIK-LGNQLTPHFVQYQAAKQTKRLTLRQRMGIVEESALKELRERLR------SHRSD 465 (631)
T ss_pred CCeEEEEEeccchheecCCCceEEE-eCCCCCchHHHHHhhhhhhhhhHHHHhhHHHHHHHHHHHHHHH------hhhhH
Confidence 3443333333455556666544332 44455666667665554322 3333332122222221111100 22356
Q ss_pred HHHHHhhhcCCCCceeeHHHHHHHHHHh-CCCC
Q psy8270 635 YIKRFQIMDKERKGYVSINDIRRGLKNF-GETI 666 (737)
Q Consensus 635 l~~~F~~fD~d~~G~Is~~eL~~~L~~l-g~~~ 666 (737)
|.+.|+.+|.+++|+|+.+....+++.+ |.++
T Consensus 466 L~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~L 498 (631)
T KOG0377|consen 466 LEDEFRKYDPKKSGKLSISHWAKCMENITGLNL 498 (631)
T ss_pred HHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999998874 4443
No 302
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.93 E-value=0.00084 Score=77.70 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 451 RMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 451 ~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
.+...+.+.+++.|++++.++.|+++... ++.+ .|.+.+ ++ .+.+|.|++|+|--.+
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~~-~v~~~~---g~--~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDKI-KVLFSD---GT--TELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCeE-EEEECC---CC--EEEcCEEEEeeCCCCC
Confidence 45566777788899999999999999765 3332 344432 33 4889999999997554
No 303
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.93 E-value=0.0008 Score=76.01 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
.||+|||||++|+.||+.|+++|++|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3799999999999999999999999999998654
No 304
>PLN02546 glutathione reductase
Probab=96.93 E-value=0.00092 Score=78.34 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=31.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEee
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVEL 73 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~ 73 (737)
.+|||+|||||..|..+|..|+++|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 369999999999999999999999999999996
No 305
>PRK09897 hypothetical protein; Provisional
Probab=96.92 E-value=0.015 Score=67.91 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHHhcC--CeEEEEeecC-CCCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRG--LKTALVELDD-FASGT 80 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G--~~V~vle~~~-~~~g~ 80 (737)
.+|+|||||..|+++|..|++.+ ++|+|+|++. ++.|-
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 47999999999999999999864 5899999965 44343
No 306
>PLN02529 lysine-specific histone demethylase 1
Probab=96.87 E-value=0.0011 Score=79.55 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=36.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...||+|||||+.|++||..|+++|++|+|+|+.+..+|.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 4678999999999999999999999999999999877775
No 307
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.83 E-value=0.0012 Score=81.79 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=35.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||||.+|++||++|+++|++|+|+|+.+..+|-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~ 344 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV 344 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce
Confidence 3568999999999999999999999999999998766554
No 308
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.80 E-value=0.0012 Score=82.46 Aligned_cols=41 Identities=34% Similarity=0.533 Sum_probs=37.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s 81 (737)
..+||+|||||++|+++|+.|+++|++|+|+|+++..+|..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~ 202 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSL 202 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCee
Confidence 46899999999999999999999999999999987776654
No 309
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.76 E-value=0.0046 Score=72.77 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhh
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSI 516 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L 516 (737)
...++.+|.+.+++.|++|++++.|++|+.+ +|+|.||.+.+..+++...|.|+.||+|||.++...
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~~ 184 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRIY 184 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccccC
Confidence 5678899999899999999999999999987 799999987654456666799999999999988654
No 310
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.75 E-value=0.0017 Score=74.26 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=35.3
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASG 79 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g 79 (737)
...+|+|||||.+|+++|++|+++|++|+|+|+.+..+|
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG 170 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG 170 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 457999999999999999999999999999999865554
No 311
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.73 E-value=0.0054 Score=68.60 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 630 ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
.-.+.+..+|+.||.|++|.|+.+||.. ++.+|+.+|.|+||.|+++||...+..
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3446789999999999999999999942 578999999999999999999998864
No 312
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.73 E-value=0.0014 Score=73.80 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=42.5
Q ss_pred EChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 447 QDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 447 Vdp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
++-..+...|...+. .+.++++++|+++..+ ++. +.|++.+ ++ ++.||.||.|.|.||.
T Consensus 102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~-~~~-~~v~~~~---g~--~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 102 VHRADFLDALLKHLP--EGIASFGKRATQIEEQ-AEE-VQVLFTD---GT--EYRCDLLIGADGIKSA 160 (414)
T ss_pred CCHHHHHHHHHHhCC--CceEEcCCEEEEEEec-CCc-EEEEEcC---CC--EEEeeEEEECCCccHH
Confidence 455667777776653 3567889999999876 444 3455443 33 5899999999999995
No 313
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.72 E-value=0.0018 Score=74.71 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
..+...+...+++.|+++++++.++++... ++. ..|++.+ .++..++.+|.||+|+|.-.+
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~--~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTD--STNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEec--CCcceEEEeCEEEEEecCCcC
Confidence 356666777788899999999999999765 343 2355544 111236999999999996443
No 314
>KOG1399|consensus
Probab=96.71 E-value=0.0015 Score=74.34 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
+.-+|+|||||++||++|..|.+.|+.|+|+||.+..+|.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl 44 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL 44 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce
Confidence 3568999999999999999999999999999998777664
No 315
>KOG2643|consensus
Probab=96.68 E-value=0.0072 Score=66.74 Aligned_cols=101 Identities=13% Similarity=0.238 Sum_probs=76.3
Q ss_pred HHHHHhhhcCCCCceeeHHHHHHHHHHhC-CCCC--HHHHHHHHHHhCCCCCCceeHHHHHHHHHhh-------------
Q psy8270 635 YIKRFQIMDKERKGYVSINDIRRGLKNFG-ETIS--GEELHEILREIDSNMNGQVELDEYLQMMSAI------------- 698 (737)
Q Consensus 635 l~~~F~~fD~d~~G~Is~~eL~~~L~~lg-~~~s--~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~------------- 698 (737)
++--|..+|+..+|.|+..+|..++-... .+.. ...++++-++++.+ +..|+++||..+...+
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy 398 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFY 398 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 56679999999999999999988887753 2222 22356666777665 5569999998877655
Q ss_pred --cCCCCCHHHHHHHHHHh-CCcCCHHHHHHHHc-cccCCCC
Q psy8270 699 --KSGHVAYSRFAKMAEME-EEKHEKEILKKQIS-VERSGGG 736 (737)
Q Consensus 699 --~~G~is~~elk~~l~~l-g~~ls~~el~~~i~-~D~ngDG 736 (737)
....|+..+|+++.... |.++|+.=++-+|. .|.||||
T Consensus 399 ~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg 440 (489)
T KOG2643|consen 399 HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDG 440 (489)
T ss_pred HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCC
Confidence 25789999999988874 88888764444555 9999998
No 316
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.67 E-value=0.0021 Score=73.92 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=47.0
Q ss_pred HHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeec---------ccCeeEEEEcCEEEecCCCChh--hhhhhcCC
Q psy8270 457 ALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDE---------LTGKEWDLKAKSVINATGPFTD--SIRRMDDG 522 (737)
Q Consensus 457 ~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~---------~tg~~~~I~Ad~VV~a~Gaws~--~L~~~lG~ 522 (737)
...+++.|+++++++.++++..+ +|++.+|++... .+++...+.+|.||+|+|.-.+ .+++.+++
T Consensus 336 ~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 336 VSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc
Confidence 34567889999999999999765 688888876421 1233457999999999996543 35555443
No 317
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.66 E-value=0.038 Score=61.47 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=42.2
Q ss_pred HHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh-hhhhhcCCC
Q psy8270 458 LTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD-SIRRMDDGQ 523 (737)
Q Consensus 458 ~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~-~L~~~lG~~ 523 (737)
+.+++.|++++++++|+++..+ ++. ..|++.+ ++ .+.||.||+|+|...+ .+++.+|+.
T Consensus 191 ~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~---g~--~i~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 191 HRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDS---GR--SIEVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcC---Cc--EEECCEEEECcCCCcchHHHHHCCCC
Confidence 3456789999999999999875 333 3455433 33 5999999999998775 466666644
No 318
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.66 E-value=0.0018 Score=78.62 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=35.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||||.+|+++|++|+++|++|+|+|+.+..+|.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~ 469 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGV 469 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCe
Confidence 4568999999999999999999999999999997655553
No 319
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.65 E-value=0.0021 Score=79.34 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=35.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||||.+|+++|++|+++|++|+|+|+.+..+|.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~ 577 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGV 577 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcc
Confidence 4568999999999999999999999999999998766654
No 320
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.63 E-value=0.0019 Score=80.55 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=35.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||||.+|+++|++|+++|++|+|+|+.+..+|-
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~ 468 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV 468 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce
Confidence 3568999999999999999999999999999998766553
No 321
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.62 E-value=0.0022 Score=76.78 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=35.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||||.+|+++|++|++.|++|+|+|+.+..+|-
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL 365 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence 3568999999999999999999999999999998766553
No 322
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.61 E-value=0.002 Score=74.81 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=43.5
Q ss_pred HHHHHH-CCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 457 ALTATR-HGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 457 ~~~A~~-~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
...+++ .|++++.++.|+++..+ ++++.+|++.+..+++...+.+|.||+|+|.-.+
T Consensus 394 ~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 394 QDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred HHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCC
Confidence 344444 69999999999999876 6788888887643454457999999999997553
No 323
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.59 E-value=0.0032 Score=54.14 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=31.7
Q ss_pred EEEECCChhHHHHHHHHHhcCCeEEEEeecCCCC
Q psy8270 45 VLIIGGGATGSGCALDAVTRGLKTALVELDDFAS 78 (737)
Q Consensus 45 vvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~ 78 (737)
++|||||.+|+-+|..|++.|.+|+|+++.+...
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 7999999999999999999999999999987654
No 324
>KOG4716|consensus
Probab=96.59 E-value=0.0029 Score=68.05 Aligned_cols=55 Identities=31% Similarity=0.475 Sum_probs=45.5
Q ss_pred HhhhccCCcccEEEECCChhHHHHHHHHHhcCCeEEEEeec-CCCCCCCcCcccce
Q psy8270 34 IKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELD-DFASGTSSRSTKLI 88 (737)
Q Consensus 34 ~~~~~~~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~-~~~~g~s~~~~~~~ 88 (737)
+.++.+.-.||.+|||||-.||+||-+++.-|.+|.++|-- +.+.|+|+.-+|-+
T Consensus 11 l~~~~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTC 66 (503)
T KOG4716|consen 11 LARLFSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTC 66 (503)
T ss_pred hhhhcccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCcee
Confidence 34456667899999999999999999999999999999984 55678876666544
No 325
>KOG1276|consensus
Probab=96.55 E-value=0.0022 Score=70.94 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=34.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeE--EEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKT--ALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V--~vle~~~~~~g~ 80 (737)
..-+|+|+|||+.||++||+|++++-+| +|.|+++..+|-
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 4568999999999999999999998775 559998887764
No 326
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.53 E-value=0.0028 Score=72.44 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=35.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||||.+|+++|+.|+++|++|+|+|+.+..+|.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~ 178 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL 178 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcE
Confidence 4578999999999999999999999999999998765543
No 327
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.51 E-value=0.0028 Score=75.79 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=35.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||||.+|+++|+.|+++|++|+|+|+.+..+|.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~ 231 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM 231 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 4568999999999999999999999999999998766554
No 328
>PLN03000 amine oxidase
Probab=96.44 E-value=0.0033 Score=76.37 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s 81 (737)
...+|+|||||++|+++|+.|++.|++|+|+|+++..+|..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 46899999999999999999999999999999998887753
No 329
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.44 E-value=0.0032 Score=72.02 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh
Q psy8270 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD 514 (737)
Q Consensus 450 ~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~ 514 (737)
..+...+.+.+++.|++++++++|+++..+ ++. +.+.. +++...+.+|.||+|+|.-.+
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~---v~~~~--~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSY-KKQ---ALFEY--EGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE---EEEEE--CCceEEEEeCEEEEecCCccC
Confidence 456677777788899999999999999765 332 33333 243346999999999996543
No 330
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.40 E-value=0.019 Score=63.41 Aligned_cols=54 Identities=28% Similarity=0.341 Sum_probs=35.9
Q ss_pred HHHHHHHCCcEEecCceEEEEEEcCCC--cEEEEEEeecccCeeEEEEcCEEEecCC
Q psy8270 456 IALTATRHGATVANHVRVTNLIKDDKG--KVRGAHLRDELTGKEWDLKAKSVINATG 510 (737)
Q Consensus 456 l~~~A~~~Gve~~~nt~V~~L~~d~~~--~V~gV~~~~~~tg~~~~I~Ad~VV~a~G 510 (737)
+.-.|.+.+-.+.++++|++|...+++ ..+.|++++ .+|....+.|+.||+|+|
T Consensus 101 l~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 101 LRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATG 156 (341)
T ss_dssp HHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE---
T ss_pred HHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcC
Confidence 333455666668889999999876333 356777765 356667899999999999
No 331
>KOG0038|consensus
Probab=96.39 E-value=0.012 Score=56.01 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=45.4
Q ss_pred HHHHhCCCCCCceeHHHHHHHHHhh--------------------cCCCCCHHHHHHHHHHhCC-cCCHHHHHH----HH
Q psy8270 674 ILREIDSNMNGQVELDEYLQMMSAI--------------------KSGHVAYSRFAKMAEMEEE-KHEKEILKK----QI 728 (737)
Q Consensus 674 i~~~~D~d~dG~I~feEF~~ll~~~--------------------~~G~is~~elk~~l~~lg~-~ls~~el~~----~i 728 (737)
|-..+..++.|.++|++|+.++.-. ++++|.++++.+.++.|.. .+|++|++. +|
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvi 155 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVI 155 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 3344455777888888888776544 4778888888888888754 578877644 44
Q ss_pred c-cccCCCCC
Q psy8270 729 S-VERSGGGL 737 (737)
Q Consensus 729 ~-~D~ngDG~ 737 (737)
. .|.||||.
T Consensus 156 eEAD~DgDgk 165 (189)
T KOG0038|consen 156 EEADLDGDGK 165 (189)
T ss_pred HHhcCCCCCc
Confidence 5 88888873
No 332
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.38 E-value=0.0042 Score=71.62 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHHh--cCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVT--RGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~--~G~~V~vle~~~~~~g~ 80 (737)
....|+|||||.+|+.||+.|++ .|++|+|+|+.+..+|-
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence 35679999999999999999997 79999999999877664
No 333
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.37 E-value=0.0041 Score=51.15 Aligned_cols=55 Identities=15% Similarity=0.318 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCCC
Q psy8270 670 ELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGGL 737 (737)
Q Consensus 670 ev~~i~~~~D~d~dG~I~feEF~~ll~~~~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG~ 737 (737)
.++++|+.+|.+++|.|+.+||..++.......- .++. .+.++.+++ +|.|+||.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~D~d~dG~ 56 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-DEES------------DEMIDQIFREFDTDGDGR 56 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-HHHH------------HHHHHHHHHHHTTTSSSS
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-HHHH------------HHHHHHHHHHhCCCCcCC
Confidence 3688999999999999999999988876542111 2222 234455566 88888874
No 334
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.36 E-value=0.0042 Score=57.53 Aligned_cols=62 Identities=18% Similarity=0.302 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy8270 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQ 693 (737)
Q Consensus 630 ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ 693 (737)
.....+...|..+|.|+||.++.+||..+...+ ...+.-++..++.+|.|+|+.|++.|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 455677888999999999999999999976655 45566789999999999999999999874
No 335
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.28 E-value=0.005 Score=70.72 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=35.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||||.+|+++|+.|+++|++|+|+|+.+..+|-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~ 179 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGL 179 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCce
Confidence 4578999999999999999999999999999998766553
No 336
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.26 E-value=0.055 Score=60.66 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.++|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 469999999999999999999999999999854
No 337
>PRK07846 mycothione reductase; Reviewed
Probab=96.25 E-value=0.0043 Score=70.95 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccce
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLI 88 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~~ 88 (737)
+||+||||||..|..+|..+ .|.+|+|+|++.+++.+ -|.|-+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC--~n~GCi 43 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTC--LNVGCI 43 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcc--cCcCcc
Confidence 48999999999999888663 59999999997654333 455443
No 338
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.22 E-value=0.061 Score=61.78 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
-.++|||||.+|+-+|..|++.|.+|+|+|+.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 4799999999999999999999999999999753
No 339
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.21 E-value=0.0067 Score=40.74 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=15.4
Q ss_pred HHHHHhhhcCCCCceeeHHHHHHH
Q psy8270 635 YIKRFQIMDKERKGYVSINDIRRG 658 (737)
Q Consensus 635 l~~~F~~fD~d~~G~Is~~eL~~~ 658 (737)
|++.|+.+|.|++|.|+.+|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 345666666666666666666654
No 340
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.17 E-value=0.062 Score=61.37 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-+++|||||.+|+.+|..|++.|.+|+|+|+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 479999999999999999999999999999865
No 341
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.16 E-value=0.0056 Score=48.43 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=34.8
Q ss_pred cCCCCCHHHHHHHHHHhCCc-CCHHHHHHHHc-cccCCCCC
Q psy8270 699 KSGHVAYSRFAKMAEMEEEK-HEKEILKKQIS-VERSGGGL 737 (737)
Q Consensus 699 ~~G~is~~elk~~l~~lg~~-ls~~el~~~i~-~D~ngDG~ 737 (737)
++|+|+.++|++++..+|.+ +++++++.++. +|.|+||.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~ 41 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGY 41 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSS
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCC
Confidence 36888999999999888998 99999999999 99999985
No 342
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.13 E-value=0.0097 Score=52.76 Aligned_cols=51 Identities=8% Similarity=0.139 Sum_probs=34.1
Q ss_pred HHHHHHHHhCC-CCCCceeHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCcCCH-HHHHHHHc-cccCCCC
Q psy8270 670 ELHEILREIDS-NMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEK-EILKKQIS-VERSGGG 736 (737)
Q Consensus 670 ev~~i~~~~D~-d~dG~I~feEF~~ll~~~~~G~is~~elk~~l~~lg~~ls~-~el~~~i~-~D~ngDG 736 (737)
.+...|..+|. +++|.|+..||..+++.- +++.++. ++++++|+ +|.|+||
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~e----------------lg~~ls~~~~v~~mi~~~D~d~DG 62 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQ----------------LPHLLKDVEGLEEKMKNLDVNQDS 62 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHH----------------hhhhccCHHHHHHHHHHhCCCCCC
Confidence 46778888888 888878777666555430 4444555 66777776 7777776
No 343
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.10 E-value=0.0063 Score=72.67 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=35.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||||.+|+++|+.|++.|++|+|+|+.+..+|.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~ 348 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM 348 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCe
Confidence 3567999999999999999999999999999998876554
No 344
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.06 E-value=0.085 Score=60.36 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
-.++|||||.+|+-.|..|+++|.+|+++++.+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 3699999999999999999999999999999653
No 345
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.05 E-value=0.0076 Score=69.62 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=35.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
..+|+|||||.+|+++|.+|+++|++|+|+|+.+..+|.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~ 181 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGL 181 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCce
Confidence 468999999999999999999999999999998765553
No 346
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.04 E-value=0.0083 Score=66.15 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=35.1
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
..+|+|||||.+|+++|..|++.|++|+|+|+.+..+|.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~ 56 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGL 56 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCce
Confidence 357999999999999999999999999999998776654
No 347
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.04 E-value=0.0064 Score=69.55 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccce
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLI 88 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~~ 88 (737)
+||+||||||..|..+|.. ..|.+|+++|++.+ +| +.-|-|-+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~-GG-tC~n~GCi 44 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTF-GG-TCLNVGCI 44 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCC-CC-eeeccCcc
Confidence 5999999999999888654 46999999999654 34 33555544
No 348
>PLN02976 amine oxidase
Probab=96.02 E-value=0.0074 Score=76.05 Aligned_cols=40 Identities=18% Similarity=0.405 Sum_probs=36.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...||+|||||++|+++|+.|+++|++|+|+|+.+..+|.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 4589999999999999999999999999999998777665
No 349
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.99 E-value=0.0077 Score=69.14 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh
Q psy8270 451 RMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS 515 (737)
Q Consensus 451 ~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~ 515 (737)
.+...+...+++.|++++++++|+++..+ ++++ .|++.+ ++ .+.+|.||+|+|.-.+.
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~-~v~~~~---g~--~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERT-GDGV-VVTLTD---GR--TVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEE-EEEECC---Cc--EEEecEEEEeecCCcCC
Confidence 45566677778899999999999999765 3443 244432 33 58999999999975543
No 350
>KOG0685|consensus
Probab=95.99 E-value=0.0088 Score=67.25 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=34.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~~g~ 80 (737)
....|||||||++|++||-+|.+.|. .|+|+|..+..+|-
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 45579999999999999999998775 79999998877774
No 351
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.97 E-value=0.0075 Score=70.92 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
..-+|+|||+|.+|+++|+.|++.|++|+|+|+.+..+|.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~ 175 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGM 175 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCe
Confidence 3457999999999999999999999999999998776654
No 352
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.95 E-value=0.094 Score=60.02 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.++|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 479999999999999999999999999999853
No 353
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.95 E-value=0.023 Score=50.17 Aligned_cols=57 Identities=16% Similarity=0.367 Sum_probs=41.5
Q ss_pred HHHHHHHHHhC-CCCCC-ceeHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCCC
Q psy8270 669 EELHEILREID-SNMNG-QVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGGL 737 (737)
Q Consensus 669 ~ev~~i~~~~D-~d~dG-~I~feEF~~ll~~~~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG~ 737 (737)
.++.+.|+.+| .+++| .|+.+||..+|+. +|.+. ++...++++++++|+ +|.|+||.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~---------~~~~~---lg~~~~~~~v~~~i~~~D~n~dG~ 67 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINN---------ELSHF---LEEIKEQEVVDKVMETLDSDGDGE 67 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHH---------HhHHH---hcCCCCHHHHHHHHHHhCCCCCCc
Confidence 35778899998 78999 5988888888753 33332 455667777888887 88888773
No 354
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.94 E-value=0.0082 Score=73.54 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
....|+|||||.+|+++|++|+++|++|+|+|+...
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence 346799999999999999999999999999998654
No 355
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.92 E-value=0.0068 Score=73.89 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHHhc--CCeEEEEeecCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTR--GLKTALVELDDF 76 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~--G~~V~vle~~~~ 76 (737)
+|+|||||++|+++|+.|+++ |++|+|+|+...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 899999999764
No 356
>PRK06370 mercuric reductase; Validated
Probab=95.89 E-value=0.11 Score=59.42 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 479999999999999999999999999999854
No 357
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.86 E-value=0.097 Score=59.40 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=42.1
Q ss_pred HHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh-hhhhhcCCC
Q psy8270 456 IALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD-SIRRMDDGQ 523 (737)
Q Consensus 456 l~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~-~L~~~lG~~ 523 (737)
+.+.+++.|++++.+++|+++..+ +++..+... +. .+.||.||+|+|.+.+ .+++.+|+.
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~~~----~~--~i~~d~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIGE--DKVEGVVTD----KG--EYEADVVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEecC--CcEEEEEeC----CC--EEEcCEEEECcCCCcCHHHHHhcCcc
Confidence 344456789999999999999643 555555432 22 5899999999998754 466665543
No 358
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.78 E-value=0.13 Score=58.92 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.++|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 379999999999999999999999999999754
No 359
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.71 E-value=0.14 Score=58.58 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-+++|||||.+|+-+|..|.+.|.+|+|+++.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 379999999999999999999999999999864
No 360
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.68 E-value=0.016 Score=38.90 Aligned_cols=25 Identities=16% Similarity=0.652 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHH
Q psy8270 671 LHEILREIDSNMNGQVELDEYLQMM 695 (737)
Q Consensus 671 v~~i~~~~D~d~dG~I~feEF~~ll 695 (737)
++++|+.+|.|+||.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 361
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.67 E-value=0.17 Score=58.23 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.++|||||.+|+-.|..|++.|.+|+|+|+.+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 469999999999999999999999999999843
No 362
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.67 E-value=0.13 Score=63.40 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=44.1
Q ss_pred HHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh-hhhhcCCC
Q psy8270 456 IALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS-IRRMDDGQ 523 (737)
Q Consensus 456 l~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~-L~~~lG~~ 523 (737)
+.+.++++|+++++++.|+++..++.+.+..|++.+ |+ .+.+|.||+|+|.-.+. |++..|+.
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d---G~--~i~~D~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD---GS--ELEVDFIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC---CC--EEEcCEEEECCCcccCchHHhhcCcc
Confidence 334456789999999999999764234455566543 43 59999999999976544 55555543
No 363
>PRK13984 putative oxidoreductase; Provisional
Probab=95.62 E-value=0.014 Score=69.17 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=36.1
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
...+|+|||+|.+|+++|..|+++|++|+|+|+.+..+|.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~ 321 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGV 321 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence 4578999999999999999999999999999998776654
No 364
>KOG2960|consensus
Probab=95.43 E-value=0.0043 Score=62.79 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=34.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhc--CCeEEEEeecCCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTR--GLKTALVELDDFASGTS 81 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~--G~~V~vle~~~~~~g~s 81 (737)
.+.||||||+|-.|+++||+.+++ .++|+++|..-.++|.+
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 367999999999999999999965 68999999985555544
No 365
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.30 E-value=0.14 Score=62.79 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=42.2
Q ss_pred HHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh-hhhhcCC
Q psy8270 458 LTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS-IRRMDDG 522 (737)
Q Consensus 458 ~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~-L~~~lG~ 522 (737)
+.++++|+++++++.|+++..+ +++.+|++.+ |+ .+.+|.||+|+|.-.+. +++.+++
T Consensus 190 ~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d---G~--~i~~D~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 190 RELEQKGLTFLLEKDTVEIVGA--TKADRIRFKD---GS--SLEADLIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHHHcCCEEEeCCceEEEEcC--CceEEEEECC---CC--EEEcCEEEECCCCCcCcHHHHhcCC
Confidence 3456789999999999998754 5667777654 43 59999999999976443 4444443
No 366
>PRK06116 glutathione reductase; Validated
Probab=95.27 E-value=0.21 Score=57.04 Aligned_cols=33 Identities=24% Similarity=0.145 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.|+|||||.+|+-+|..|++.|.+|+++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 469999999999999999999999999999865
No 367
>KOG2311|consensus
Probab=95.21 E-value=0.018 Score=64.50 Aligned_cols=36 Identities=36% Similarity=0.609 Sum_probs=33.5
Q ss_pred cCCcccEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 39 ~~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
++..|||||||||++|.-+|...++-|.+++++..+
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 357899999999999999999999999999999985
No 368
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.17 E-value=0.027 Score=64.72 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=34.5
Q ss_pred cccEEEECCChhHHHHHHHHH-hcCCeEEEEeecCCCCCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAV-TRGLKTALVELDDFASGTS 81 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La-~~G~~V~vle~~~~~~g~s 81 (737)
..-|+|||||.+|+.||.+|+ ++|++|.|+|+.+..+|-.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLv 79 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLI 79 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEE
Confidence 346999999999999999865 6799999999998887654
No 369
>KOG0169|consensus
Probab=95.12 E-value=0.094 Score=61.90 Aligned_cols=100 Identities=17% Similarity=0.282 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh-----------
Q psy8270 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI----------- 698 (737)
Q Consensus 630 ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~----------- 698 (737)
....-+..+|+..|++++|.++.++..++++.++..+....+..+|++.+...++++.+++|+.+....
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~ 212 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFV 212 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHH
Confidence 444678899999999999999999999999999999999999999999988899999999998877655
Q ss_pred ----cCCCCCHHHHHHHHHHhCC--cCCHHHHHHHHc
Q psy8270 699 ----KSGHVAYSRFAKMAEMEEE--KHEKEILKKQIS 729 (737)
Q Consensus 699 ----~~G~is~~elk~~l~~lg~--~ls~~el~~~i~ 729 (737)
+.++++.+++...++.... ..+.+.++++|+
T Consensus 213 ~~s~~~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~ 249 (746)
T KOG0169|consen 213 QYSHGKEYLSTDDLLRFLEEEQGEDGATLDEAEEIIE 249 (746)
T ss_pred HHhCCCCccCHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 3678888888888877632 567777777776
No 370
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.00 E-value=0.2 Score=55.73 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=40.3
Q ss_pred HCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCC
Q psy8270 462 RHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF 512 (737)
Q Consensus 462 ~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaw 512 (737)
+..+.++.+++|..++...+|+ ..+.+.+..+++..++..|.||+|||-.
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecccc
Confidence 3457899999999999884455 5677777667888889999999999964
No 371
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=94.98 E-value=0.037 Score=38.81 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy8270 670 ELHEILREIDSNMNGQVELDEYLQMMS 696 (737)
Q Consensus 670 ev~~i~~~~D~d~dG~I~feEF~~ll~ 696 (737)
+++++|+.+|.+++|.|+++||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999999987
No 372
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.86 E-value=0.025 Score=64.67 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASG 79 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g 79 (737)
-.|.|||||..|++||+.|++.|+.|+|.|+.+..+|
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 6799999999999999999999999999999876655
No 373
>KOG0405|consensus
Probab=94.66 E-value=0.036 Score=60.18 Aligned_cols=48 Identities=35% Similarity=0.481 Sum_probs=39.0
Q ss_pred cCCcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCCcCcccc
Q psy8270 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKL 87 (737)
Q Consensus 39 ~~~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s~~~~~~ 87 (737)
..+.||.+|||||-.|+++|.+++..|.+|.|+|...-.+| |..+-|-
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGG-TCVn~GC 64 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGG-TCVNVGC 64 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCc-eEEeecc
Confidence 44689999999999999999999999999999999643333 4455443
No 374
>KOG4065|consensus
Probab=94.58 E-value=0.14 Score=46.99 Aligned_cols=67 Identities=19% Similarity=0.404 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHh------CC----CCCHHHHHHHHHH----hCCCCCCceeHHHH
Q psy8270 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNF------GE----TISGEELHEILRE----IDSNMNGQVELDEY 691 (737)
Q Consensus 626 ~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~l------g~----~~s~~ev~~i~~~----~D~d~dG~I~feEF 691 (737)
.++++++ -...|+..|.|++|.++--||..++.-. |. -+++.|++.++.. -|.|+||.|+|.||
T Consensus 62 ~mtpeql--qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQL--QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHH--hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 4566654 3568999999999999999998888643 32 2356777776654 57889999999999
Q ss_pred HHH
Q psy8270 692 LQM 694 (737)
Q Consensus 692 ~~l 694 (737)
++.
T Consensus 140 lK~ 142 (144)
T KOG4065|consen 140 LKR 142 (144)
T ss_pred Hhh
Confidence 864
No 375
>KOG3855|consensus
Probab=94.55 E-value=0.037 Score=61.35 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=39.9
Q ss_pred cccCCCCCCchHHHhhhccCCcccEEEECCChhHHHHHHHHHhc----CCeEEEEeecCC
Q psy8270 21 LRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTR----GLKTALVELDDF 76 (737)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~dvvIiG~G~~G~~~A~~La~~----G~~V~vle~~~~ 76 (737)
.+.....+.+......-.+.+.|||||+|||.+|++-|..|... -+||+++|.++.
T Consensus 15 v~~t~~~~~~~~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 15 VRYTQRLDTRRTASAKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccccccccccccccccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 33444444444433333445689999999999999999999854 578999999753
No 376
>KOG1238|consensus
Probab=94.35 E-value=0.041 Score=64.26 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=43.2
Q ss_pred HCCcEEecCceEEEEEEcCC-CcEEEEEEeecccCeeEEEEc-CEEEecCCC-ChhhhhhhcCCC
Q psy8270 462 RHGATVANHVRVTNLIKDDK-GKVRGAHLRDELTGKEWDLKA-KSVINATGP-FTDSIRRMDDGQ 523 (737)
Q Consensus 462 ~~Gve~~~nt~V~~L~~d~~-~~V~gV~~~~~~tg~~~~I~A-d~VV~a~Ga-ws~~L~~~lG~~ 523 (737)
+....+..++.|+.+..|.. .++.||..... .++..++.| +-||+++|+ -|++|+=..|+-
T Consensus 266 R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~-~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIG 329 (623)
T KOG1238|consen 266 RPNLHISRNAAVTRVLIDPAGKRAKGVEFVRD-GGKEHTVKARKEVILSAGAINSPQLLMLSGIG 329 (623)
T ss_pred CccccccccceEEEEEEcCCCceEEEEEEEec-CceeeeecccceEEEeccccCCHHHHHHcCCC
Confidence 34667788899999988744 44788887662 256667887 459999997 567776555553
No 377
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=94.35 E-value=0.12 Score=45.98 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=38.9
Q ss_pred HHHHHHHHhC-CCCCC-ceeHHHHHHHHHhhc----CCCCCHHHHHHHHHHhCC----cCCHHHHHHHH
Q psy8270 670 ELHEILREID-SNMNG-QVELDEYLQMMSAIK----SGHVAYSRFAKMAEMEEE----KHEKEILKKQI 728 (737)
Q Consensus 670 ev~~i~~~~D-~d~dG-~I~feEF~~ll~~~~----~G~is~~elk~~l~~lg~----~ls~~el~~~i 728 (737)
.+.++|..+| .+++| +|+.+||..++.... .+..+.+++.+++..++. .++-+|+-.++
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 4667799998 67888 599999999886531 334455566666666633 25555555444
No 378
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=94.32 E-value=0.064 Score=47.39 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=30.0
Q ss_pred HHHHHHhCC-CC-CCceeHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCC
Q psy8270 672 HEILREIDS-NM-NGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGG 736 (737)
Q Consensus 672 ~~i~~~~D~-d~-dG~I~feEF~~ll~~~~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG 736 (737)
-.+|..++. ++ +|.|+.+||..++++. ..+|+++++++++++++ +|.|+||
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~--------------~~lg~k~t~~ev~~m~~~~D~d~dG 66 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKE--------------LTIGSKLQDAEIAKLMEDLDRNKDQ 66 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHH--------------HhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 345555654 34 4555555555444320 02567777777777777 7777776
No 379
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=94.27 E-value=0.44 Score=55.16 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHHh---cCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVT---RGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~---~G~~V~vle~~~~ 76 (737)
-.++|||||.+|+-.|..++. .|.+|+|+|+.+.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM 224 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence 469999999999999976654 4999999998754
No 380
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.26 E-value=0.1 Score=40.66 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHhhcCCCCCHHHHHHHHHHhCC----cCCHHHHHH
Q psy8270 671 LHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEE----KHEKEILKK 726 (737)
Q Consensus 671 v~~i~~~~D~d~dG~I~feEF~~ll~~~~~G~is~~elk~~l~~lg~----~ls~~el~~ 726 (737)
++.+|+.+|.+++|.|+++||..++.... -..+.+.++.++..++. .++.+++..
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~ 60 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 57789999999999999999999887654 34455566777766532 345555543
No 381
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.16 E-value=0.054 Score=52.73 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=30.5
Q ss_pred EEECCChhHHHHHHHHHhc-----CCeEEEEeecCCCCCCC
Q psy8270 46 LIIGGGATGSGCALDAVTR-----GLKTALVELDDFASGTS 81 (737)
Q Consensus 46 vIiG~G~~G~~~A~~La~~-----G~~V~vle~~~~~~g~s 81 (737)
+|||+|+.|++++.+|++. ..+|+|+|+..++.|..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~ 41 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGA 41 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcccccc
Confidence 5999999999999999987 46899999987754543
No 382
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=94.07 E-value=0.14 Score=45.35 Aligned_cols=47 Identities=9% Similarity=0.155 Sum_probs=33.1
Q ss_pred HHHHHHHHHhC-CCCCC-ceeHHHHHHHHHh-hcC---CCCCHHHHHHHHHHh
Q psy8270 669 EELHEILREID-SNMNG-QVELDEYLQMMSA-IKS---GHVAYSRFAKMAEME 715 (737)
Q Consensus 669 ~ev~~i~~~~D-~d~dG-~I~feEF~~ll~~-~~~---G~is~~elk~~l~~l 715 (737)
+++.+.|+.+| .+++| .|+.+||..++.. +.. -..+.+++++++..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~ 61 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKEL 61 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 55888999997 99999 5999999998864 321 123455556665555
No 383
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=93.91 E-value=0.064 Score=60.12 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhh-hhhhcCC
Q psy8270 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDS-IRRMDDG 522 (737)
Q Consensus 449 p~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~-L~~~lG~ 522 (737)
+..+...+...+++.|++++++++|+++..+ +. ..|++.+ ++ .+.||.||+|+|...+. +++.+++
T Consensus 185 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~-~~v~l~~---g~--~i~aD~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 185 PPPVQRYLLQRHQQAGVRILLNNAIEHVVDG--EK-VELTLQS---GE--TLQADVVIYGIGISANDQLAREANL 251 (396)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeeEEEEcC--CE-EEEEECC---CC--EEECCEEEECCCCChhhHHHHhcCC
Confidence 3455566777788999999999999999653 22 3355433 33 59999999999987754 4444443
No 384
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.90 E-value=0.058 Score=61.20 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHhcC--CeEEEEeecCCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRG--LKTALVELDDFA 77 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G--~~V~vle~~~~~ 77 (737)
.|||||||.+|+++|..|++.| .+|+|+|+++..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 5999999999999999999875 589999998654
No 385
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.89 E-value=0.17 Score=44.97 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCC-CC-CCceeHHHHHHHHHh-hc---CCCCCHHHHHHHHHHhCC----cCCHHHHHHHH
Q psy8270 669 EELHEILREIDS-NM-NGQVELDEYLQMMSA-IK---SGHVAYSRFAKMAEMEEE----KHEKEILKKQI 728 (737)
Q Consensus 669 ~ev~~i~~~~D~-d~-dG~I~feEF~~ll~~-~~---~G~is~~elk~~l~~lg~----~ls~~el~~~i 728 (737)
..+.+.|..+|. ++ +|.|+.+|+..++.. .. ....+.+++.+++..++. .++-+++..++
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 457889999987 87 699999999988864 11 113345555555555422 34555554443
No 386
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.045 Score=59.37 Aligned_cols=48 Identities=27% Similarity=0.423 Sum_probs=38.4
Q ss_pred CCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCC
Q psy8270 463 HGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGP 511 (737)
Q Consensus 463 ~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Ga 511 (737)
..++|+.|+.-+.+.-+ +.+|+|++.++..+++...+.=+.|.+--|.
T Consensus 403 ~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL 450 (520)
T COG3634 403 PNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELEGVFVQIGL 450 (520)
T ss_pred CCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEeeeeEEEEec
Confidence 47999999999999877 7899999999887787766666666666554
No 387
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.69 E-value=0.088 Score=50.46 Aligned_cols=31 Identities=39% Similarity=0.482 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 45 VLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 45 vvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
|+|+|+|.+|+..|++|+++|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999854
No 388
>KOG0399|consensus
Probab=93.61 E-value=0.074 Score=64.86 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=35.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASG 79 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g 79 (737)
...|.|||+|.+||+||-.|.+.|+.|+|.||.+..+|
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 45699999999999999999999999999999887765
No 389
>KOG4251|consensus
Probab=93.47 E-value=0.15 Score=52.64 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhcCCCCceeeHHHHHHHHHH-hCCCC--CHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy8270 632 INQYIKRFQIMDKERKGYVSINDIRRGLKN-FGETI--SGEELHEILREIDSNMNGQVELDEYLQMMS 696 (737)
Q Consensus 632 ~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~-lg~~~--s~~ev~~i~~~~D~d~dG~I~feEF~~ll~ 696 (737)
..++..+|...|.|.+++|+..|+++.+.. ..+.+ ..++-+..|...|.|+||.|+|+||..-+.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 367899999999999999999999776654 32222 122334456778999999999999986554
No 390
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.45 E-value=0.081 Score=60.24 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChh-hhhhhcCC
Q psy8270 451 RMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTD-SIRRMDDG 522 (737)
Q Consensus 451 ~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~-~L~~~lG~ 522 (737)
.+...+.+.+++.|++++.+++|+++... .|++.+ ++ .+.+|.|++|+|.-.+ .+++..|+
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~------~v~~~~---g~--~~~~D~vl~a~G~~pn~~~l~~~gl 251 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAINGN------EVTFKS---GK--VEHYDMIIEGVGTHPNSKFIESSNI 251 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeCC------EEEECC---CC--EEEeCEEEECcCCCcChHHHHhcCc
Confidence 46667777788999999999999998521 355433 33 5899999999997553 34555554
No 391
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.43 E-value=0.094 Score=34.16 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=13.2
Q ss_pred HHHHhhhcCCCCceeeHHHHHHHHH
Q psy8270 636 IKRFQIMDKERKGYVSINDIRRGLK 660 (737)
Q Consensus 636 ~~~F~~fD~d~~G~Is~~eL~~~L~ 660 (737)
+.+|+.+|.+++|.|+..+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555555555555544
No 392
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.34 E-value=0.096 Score=52.46 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=27.3
Q ss_pred EEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 45 VLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 45 vvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
|.|||+|..|.+.|..++..|++|.++|.++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 7899999999999999999999999999953
No 393
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.28 E-value=0.11 Score=33.84 Aligned_cols=28 Identities=29% Similarity=0.665 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 670 ELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 670 ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
+++++|+.+|.+++|.|+++||..++..
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3678999999999999999999998864
No 394
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=93.20 E-value=0.27 Score=43.52 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=20.7
Q ss_pred HHHHHHH-hCCCCCC-ceeHHHHHHHHHh
Q psy8270 671 LHEILRE-IDSNMNG-QVELDEYLQMMSA 697 (737)
Q Consensus 671 v~~i~~~-~D~d~dG-~I~feEF~~ll~~ 697 (737)
+..+|+. .+.++++ +|+.+||..++..
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~ 39 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNT 39 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHH
Confidence 5667777 5677765 8999999888875
No 395
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.16 E-value=0.099 Score=57.79 Aligned_cols=39 Identities=36% Similarity=0.525 Sum_probs=35.7
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
..++||||+|.+|+-+|..|+++|++|+++|+.+...+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~ 174 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence 469999999999999999999999999999998777664
No 396
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.14 E-value=0.12 Score=55.80 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
.-.|-|||||.+|+-+||.+|++|.+|.+.|-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 34589999999999999999999999999998643
No 397
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.11 E-value=0.29 Score=48.44 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHH
Q psy8270 633 NQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELH 672 (737)
Q Consensus 633 ~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~ 672 (737)
..|++-...||+|+||.|.+.|--..++.+|+++--.-+-
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~a 46 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLA 46 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHH
Confidence 3477778889999999999999999999998776444333
No 398
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.10 E-value=0.35 Score=41.78 Aligned_cols=71 Identities=17% Similarity=0.354 Sum_probs=56.0
Q ss_pred HHHHHHhhhcCCCCceeeHHHHHHHHHHhC-C-CCCHHHHHHHHHHhCCC----CCCceeHHHHHHHHHhhcCCCCCH
Q psy8270 634 QYIKRFQIMDKERKGYVSINDIRRGLKNFG-E-TISGEELHEILREIDSN----MNGQVELDEYLQMMSAIKSGHVAY 705 (737)
Q Consensus 634 ~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg-~-~~s~~ev~~i~~~~D~d----~dG~I~feEF~~ll~~~~~G~is~ 705 (737)
++..+|+.|-. +.+.|+.++|.+.|+.-. . ..+.++++.+|..+..+ ..+.+++++|..+|....+.-..+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~~~~~ 77 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDENSIFDP 77 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCBSS-H
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcCCCCCh
Confidence 46889999965 788999999999998754 3 46899999999998544 468999999999998765444444
No 399
>KOG2562|consensus
Probab=92.98 E-value=0.66 Score=52.13 Aligned_cols=92 Identities=15% Similarity=0.277 Sum_probs=67.2
Q ss_pred HHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCCCCceeHHHHHHHHHhh------------
Q psy8270 635 YIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREI----DSNMNGQVELDEYLQMMSAI------------ 698 (737)
Q Consensus 635 l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~----D~d~dG~I~feEF~~ll~~~------------ 698 (737)
+--.|-.+|+|++|.|+.++|+.... ..++.--+++||..+ ..-.+|+++|++|+-++...
T Consensus 280 iy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYw 356 (493)
T KOG2562|consen 280 IYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYW 356 (493)
T ss_pred HHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhh
Confidence 44458888999999999999988643 446677789999943 34568999999999888655
Q ss_pred -------cCCCCCHHHHHHHHHH----h----CCcCCHHH-HHHHHc
Q psy8270 699 -------KSGHVAYSRFAKMAEM----E----EEKHEKEI-LKKQIS 729 (737)
Q Consensus 699 -------~~G~is~~elk~~l~~----l----g~~ls~~e-l~~~i~ 729 (737)
++|.++.+|++-.+.. + .+.+.-++ ++++++
T Consensus 357 FrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~D 403 (493)
T KOG2562|consen 357 FRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRD 403 (493)
T ss_pred eeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5899999998765543 2 23445444 366666
No 400
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=92.95 E-value=0.088 Score=57.80 Aligned_cols=54 Identities=31% Similarity=0.483 Sum_probs=38.4
Q ss_pred HHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 453 CLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 453 v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
...+...+...|++|+++++|++|..+ +++|+ |++.+ ++ .+.||+||+|+.+..
T Consensus 212 ~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v~-v~~~~---g~--~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 212 SLALALAAEELGGEIRLNTPVTRIERE-DGGVT-VTTED---GE--TIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEEEE-SSEEE-EEETT---SS--EEEESEEEE-S-HHH
T ss_pred hHHHHHHHhhcCceeecCCcceecccc-ccccc-ccccc---ce--EEecceeeecCchhh
Confidence 334445566678899999999999998 66654 55444 33 699999999998754
No 401
>KOG4251|consensus
Probab=92.87 E-value=0.66 Score=47.97 Aligned_cols=73 Identities=15% Similarity=0.318 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHH
Q psy8270 584 PKPTEDEIMFILQEKQLKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKN 661 (737)
Q Consensus 584 ~~pteeeI~~Lls~~D~d~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~ 661 (737)
+.-....+..++++.|.+. +.|+. ++.+.+.+.+.....+ ++.+++-+.-|+..|.|++|.|+.+|++.-+.+
T Consensus 96 prrsrrklmviFsKvDVNt-Drkis---AkEmqrwImektaEHf-qeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 96 PRRSRRKLMVIFSKVDVNT-DRKIS---AKEMQRWIMEKTAEHF-QEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred hhHHHHHHHHHHhhcccCc-ccccc---HHHHHHHHHHHHHHHH-HHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 4445667778888887772 12221 1112111111111111 233455677899999999999999998765544
No 402
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.78 E-value=0.11 Score=50.69 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=29.4
Q ss_pred EEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 45 VLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 45 vvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
|.|||||..|.+.|..|+.+|++|.+..++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 7999999999999999999999999998864
No 403
>KOG1955|consensus
Probab=92.77 E-value=0.15 Score=57.06 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=69.0
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh---cC
Q psy8270 624 PINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI---KS 700 (737)
Q Consensus 624 ~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~---~~ 700 (737)
++.+++++.+.+-+-|+.+-.|-.|+|+-+--++.+.+-. ++-.|+..|++..|.+.||.+++.||+..|.-. ++
T Consensus 222 pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkN 299 (737)
T KOG1955|consen 222 PWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKN 299 (737)
T ss_pred ccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheeeccc
Confidence 4577899999999999999999999999999999998854 666899999999999999999999999877544 45
Q ss_pred CCCCHH
Q psy8270 701 GHVAYS 706 (737)
Q Consensus 701 G~is~~ 706 (737)
|+--++
T Consensus 300 gypLPe 305 (737)
T KOG1955|consen 300 GYPLPE 305 (737)
T ss_pred CCCCCC
Confidence 554443
No 404
>KOG0751|consensus
Probab=92.54 E-value=0.57 Score=52.81 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=67.0
Q ss_pred HHHHHHHhhhcCCCCceeeHHHHHHHHHHhC------CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhh--------
Q psy8270 633 NQYIKRFQIMDKERKGYVSINDIRRGLKNFG------ETISGEELHEILREIDSNMNGQVELDEYLQMMSAI-------- 698 (737)
Q Consensus 633 ~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg------~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~-------- 698 (737)
.....+|+.||+.++|.++.+++.+++.+.. ++.+.+-++..|. .+..-.++|.||.+++.+.
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg---~~~~r~~ny~~f~Q~lh~~~~E~~~qa 184 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG---DIRKRHLNYAEFTQFLHEFQLEHAEQA 184 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh---hHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999863 2334444444332 2334458999999888766
Q ss_pred -------cCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc
Q psy8270 699 -------KSGHVAYSRFAKMAEMEEEKHEKEILKKQIS 729 (737)
Q Consensus 699 -------~~G~is~~elk~~l~~lg~~ls~~el~~~i~ 729 (737)
++|.|+.-+++.++-+.-..+....+++-+-
T Consensus 185 fr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv 222 (694)
T KOG0751|consen 185 FREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLV 222 (694)
T ss_pred HHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhh
Confidence 4788888888888877655554445544333
No 405
>KOG2643|consensus
Probab=92.33 E-value=0.11 Score=57.70 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=60.3
Q ss_pred HHHHHHhhhcCCCCceeeHHHHHHHHHHh------CC--------CCC-HHHHHHHHHH--hCCCCCCceeHHHHHHHHH
Q psy8270 634 QYIKRFQIMDKERKGYVSINDIRRGLKNF------GE--------TIS-GEELHEILRE--IDSNMNGQVELDEYLQMMS 696 (737)
Q Consensus 634 ~l~~~F~~fD~d~~G~Is~~eL~~~L~~l------g~--------~~s-~~ev~~i~~~--~D~d~dG~I~feEF~~ll~ 696 (737)
.++-+|++||.|+||.|+.+||..+++-+ |. ..+ ..++..-+.. +..+++++++++||..++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 34558999999999999999998877532 21 111 1233333333 4788999999999999998
Q ss_pred hh---------------cCCCCCHHHHHHHHHHh
Q psy8270 697 AI---------------KSGHVAYSRFAKMAEME 715 (737)
Q Consensus 697 ~~---------------~~G~is~~elk~~l~~l 715 (737)
.+ .+|.|++.+|.+.+--+
T Consensus 314 ~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 314 NLQEEILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred HHHHHHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 77 25899999999977665
No 406
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=92.32 E-value=0.46 Score=53.21 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh----------hhhh
Q psy8270 448 DDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT----------DSIR 517 (737)
Q Consensus 448 dp~~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws----------~~L~ 517 (737)
.+..++.+|...+++.||+|+++++|++| + +++ ..+.+.. + ...+.|+.||+|||.-+ =.++
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~---~-~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la 155 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETPD---G-QSTIEADAVVLALGGASWSQLGSDGAWQQVL 155 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEECC---C-ceEEecCEEEEcCCCccccccCCCcHHHHHH
Confidence 46789999999999999999999999999 3 333 4555422 2 22589999999999854 2456
Q ss_pred hhcCCC
Q psy8270 518 RMDDGQ 523 (737)
Q Consensus 518 ~~lG~~ 523 (737)
+.+|..
T Consensus 156 ~~lGh~ 161 (376)
T TIGR03862 156 DQRGVS 161 (376)
T ss_pred HHCCCc
Confidence 667664
No 407
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=92.04 E-value=0.68 Score=41.20 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHHhhcCCCCCHHHHHHHHHHhCC----cCCHHHHHHHHc
Q psy8270 669 EELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEE----KHEKEILKKQIS 729 (737)
Q Consensus 669 ~ev~~i~~~~D~d~dG~I~feEF~~ll~~~~~G~is~~elk~~l~~lg~----~ls~~el~~~i~ 729 (737)
.+++++|+.+|.+++|.|+++|+..++... | ++.+++++++...+. .++-+++..++.
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~-~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS--G-LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc--C-CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 346778999999999999999999999764 3 677788888877632 467777766555
No 408
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=91.88 E-value=0.29 Score=39.80 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=39.7
Q ss_pred HHHHHHhCCCCCCceeHHHHHHHHHhhcCCCCCHHHHHHHHHHhCC----cCCHHHHHHHHc
Q psy8270 672 HEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEE----KHEKEILKKQIS 729 (737)
Q Consensus 672 ~~i~~~~D~d~dG~I~feEF~~ll~~~~~G~is~~elk~~l~~lg~----~ls~~el~~~i~ 729 (737)
+++|+.+|.+++|.|+.+|+..++... | .+.+++++++..++. .++-+++..++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~--g-~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS--G-LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc--C-CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 467888999999999999999888764 3 366777777776632 356666655443
No 409
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=91.76 E-value=1.7 Score=48.01 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHHhc----CCeEEEEeecCCCCCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTR----GLKTALVELDDFASGTS 81 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~----G~~V~vle~~~~~~g~s 81 (737)
--+-|||+|++||++|.+|.+. |.++-++|--+.++|+-
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSl 65 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSL 65 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCC
Confidence 4589999999999999999985 67899999988887763
No 410
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=0.22 Score=54.67 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=37.7
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s 81 (737)
.|||+|.|.|+.-+..+..|+..|.+|+.+|+++..|+++
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS 45 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccc
Confidence 6999999999999999999999999999999999887765
No 411
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.64 E-value=0.2 Score=50.50 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=25.9
Q ss_pred EEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 45 VLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 45 vvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
|.|||.|.+|+.+|..||+.|++|+.+|.+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 8899999999999999999999999999964
No 412
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=91.48 E-value=0.22 Score=55.36 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHHhc--CCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTR--GLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~--G~~V~vle~~~ 75 (737)
.+|||||||++|+++|..|.+. ..+|+|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 5899999999999999999875 45799999875
No 413
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.41 E-value=0.2 Score=54.28 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.|.|||+|..|.+.|..|+++|++|+++|++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 59999999999999999999999999999863
No 414
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=91.34 E-value=0.19 Score=55.44 Aligned_cols=61 Identities=23% Similarity=0.208 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCChhhhhhhcCC
Q psy8270 451 RMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDG 522 (737)
Q Consensus 451 ~~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws~~L~~~lG~ 522 (737)
.+...+.+.++++|++++.+++|+++.. + .|++.+ ++ .+.+|.||+|+|...+.++...+.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~---~v~~~~---g~--~i~~D~vi~a~G~~p~~~l~~~gl 252 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD---G---ALILAD---GR--TLPADAILWATGARAPPWLAESGL 252 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC---C---eEEeCC---CC--EEecCEEEEccCCChhhHHHHcCC
Confidence 4556667778899999999999998842 2 355433 33 599999999999877766555443
No 415
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.30 E-value=0.22 Score=57.31 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.|+|||+|.+|+++|..|+++|.+|+++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 69999999999999999999999999999764
No 416
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.17 E-value=0.26 Score=50.26 Aligned_cols=37 Identities=35% Similarity=0.499 Sum_probs=32.6
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFA 77 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~ 77 (737)
+...|+|||+|..|+.+|..|++.|. +++++|.+.+-
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve 57 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVE 57 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEc
Confidence 34679999999999999999999998 69999998543
No 417
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.05 E-value=0.23 Score=51.52 Aligned_cols=32 Identities=28% Similarity=0.583 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.++|||+|-.|.+.|-.|++.|+.|+++|++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 48999999999999999999999999999974
No 418
>KOG1439|consensus
Probab=90.94 E-value=0.13 Score=56.96 Aligned_cols=41 Identities=29% Similarity=0.463 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~s 81 (737)
++|||+|+|-|.+=+..+..|+..|.+|+.+||++..||.|
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES 43 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccc
Confidence 56999999999999999999999999999999999998876
No 419
>KOG4405|consensus
Probab=90.83 E-value=0.23 Score=55.02 Aligned_cols=40 Identities=30% Similarity=0.474 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~~g~ 80 (737)
.+|||||||.|..-+..|...++.|.+|+=+|.+.+.||.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~ 46 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN 46 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCc
Confidence 6899999999999999999999999999999999988775
No 420
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.66 E-value=0.27 Score=53.88 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-|.|||+|.+|.+.|..++.+|++|++.|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 39999999999999999999999999999864
No 421
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.28 E-value=0.32 Score=52.77 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
.|+|||+|.+|...|++|++.|.+|+++.|+
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5999999999999999999999999999994
No 422
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.27 E-value=0.28 Score=56.01 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
.|+|||.|.+|+++|..|+++|++|++.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 389999999999999999999999999998654
No 423
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.22 E-value=0.31 Score=52.28 Aligned_cols=32 Identities=25% Similarity=0.546 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.|.|||+|..|.+.|..|+.+|++|.++|++.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 49999999999999999999999999999853
No 424
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.16 E-value=0.29 Score=52.48 Aligned_cols=32 Identities=28% Similarity=0.625 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 38999999999999999999999999999864
No 425
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.12 E-value=0.3 Score=52.53 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.|.|||+|..|...|..++.+|++|+++|+++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 59999999999999999999999999999864
No 426
>KOG1800|consensus
Probab=90.09 E-value=0.4 Score=52.93 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=36.1
Q ss_pred CcccEEEECCChhHHHHHHHHHhc--CCeEEEEeecCCCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTR--GLKTALVELDDFASGTS 81 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~--G~~V~vle~~~~~~g~s 81 (737)
....|+|||||.+|.-+|.+|.++ +.+|.|+|+.+.+.|-.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLv 61 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLV 61 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccccee
Confidence 345899999999999999999985 68999999998887765
No 427
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.80 E-value=0.36 Score=51.68 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 45 vvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
|+|||+|.+|...|..|++.|++|++++++
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 899999999999999999999999999984
No 428
>KOG0041|consensus
Probab=89.79 E-value=0.54 Score=47.41 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 669 EELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 669 ~ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
+....+|+.+|.+.||.|++.|...+|.++
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 346789999999999999999888888777
No 429
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=89.68 E-value=0.52 Score=41.49 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=15.9
Q ss_pred HHHHHHHhCCC--CCCceeHHHHHHHHH
Q psy8270 671 LHEILREIDSN--MNGQVELDEYLQMMS 696 (737)
Q Consensus 671 v~~i~~~~D~d--~dG~I~feEF~~ll~ 696 (737)
+-.+|.+++.. .+|.|+.+||..++.
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~ 37 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVE 37 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHH
Confidence 44566666543 356677777766665
No 430
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.65 E-value=0.46 Score=51.61 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.|+|||+|.+|...|..|+++|++|+++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 59999999999999999999999999999853
No 431
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.46 E-value=0.38 Score=48.01 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=29.0
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
.-.|+|||+|.++.-+|..|++.|.+|.++-|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 46799999999999999999999999999998753
No 432
>KOG0035|consensus
Probab=89.39 E-value=0.93 Score=55.07 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=61.2
Q ss_pred cCCCCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHH-----HHHHHHHHhCCCCCCceeHHHHHHHHHhh
Q psy8270 624 PINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGE-----ELHEILREIDSNMNGQVELDEYLQMMSAI 698 (737)
Q Consensus 624 ~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~-----ev~~i~~~~D~d~dG~I~feEF~~ll~~~ 698 (737)
....++....+++..|+.+|+...|.++..++..+|-.+|++..++ ++..++.+.|.+.-|+++|.+|...|.+.
T Consensus 738 sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 738 SKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred ccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 3345678889999999999999999999999999999999888752 23444455566666999999999998776
No 433
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.29 E-value=0.51 Score=53.71 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHHhc--CC-eEEEEeecC-CCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTR--GL-KTALVELDD-FASG 79 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~--G~-~V~vle~~~-~~~g 79 (737)
++|+|||||.+|+.+|.+|.+. .. +|.|+|+.. ++.|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~G 42 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQG 42 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCC
Confidence 6899999999999999999975 22 299999975 4444
No 434
>KOG2562|consensus
Probab=89.08 E-value=1.4 Score=49.74 Aligned_cols=129 Identities=14% Similarity=0.178 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHhccc---------hhhHHHHHHHHHHhhhhccccccCCCCHHHHHHHHHHHhhhcCCCCceeeHHHH
Q psy8270 585 KPTEDEIMFILQEKQLK---------EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDI 655 (737)
Q Consensus 585 ~pteeeI~~Lls~~D~d---------~f~eFL~~~~~~~~~~~~~~~i~~~ls~ee~~~l~~~F~~fD~d~~G~Is~~eL 655 (737)
..+.-.++.+++.+... +|.+|+ +.+-....+ .+-.-++-.|+.+|.+++|.++..||
T Consensus 307 tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv-~FilA~e~k------------~t~~SleYwFrclDld~~G~Lt~~el 373 (493)
T KOG2562|consen 307 TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFV-DFILAEEDK------------DTPASLEYWFRCLDLDGDGILTLNEL 373 (493)
T ss_pred chhhHHHHHHHhhccccceeeecCcccHHHHH-HHHHHhccC------------CCccchhhheeeeeccCCCcccHHHH
Confidence 34456777888732211 677777 433322222 22245788999999999999999998
Q ss_pred HHHHHHh-------C-CCCC-HHHHHHHHHHhCCCCCCceeHHHHHHHHHhh----------cCCCCCHHHHHHHH--HH
Q psy8270 656 RRGLKNF-------G-ETIS-GEELHEILREIDSNMNGQVELDEYLQMMSAI----------KSGHVAYSRFAKMA--EM 714 (737)
Q Consensus 656 ~~~L~~l-------g-~~~s-~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~----------~~G~is~~elk~~l--~~ 714 (737)
+-..+.. + +.++ ++-+.+|+.++.....++|++++|+. .++ -+++... |-++-+ .+
T Consensus 374 ~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~--skl~~~v~n~l~nl~kfm~~-E~RE~~~~~q 450 (493)
T KOG2562|consen 374 RYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG--SKLAGTVFNILFNLNKFMAH-ETREPFLIRQ 450 (493)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh--ccccchhhhhhccHHHHHHH-hhhhhhhhhc
Confidence 8776653 2 2222 44467788888877889999999987 222 1333333 334444 33
Q ss_pred hCCcCCHHHHHHHHc
Q psy8270 715 EEEKHEKEILKKQIS 729 (737)
Q Consensus 715 lg~~ls~~el~~~i~ 729 (737)
-.++.+..+++++.+
T Consensus 451 d~Enp~~tdwdr~a~ 465 (493)
T KOG2562|consen 451 DRENPTLTDWDRFAD 465 (493)
T ss_pred cccCCChhHHHHHHH
Confidence 355677778877765
No 435
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.01 E-value=0.5 Score=50.46 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcC-CeEEEEeecCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRG-LKTALVELDDFASG 79 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G-~~V~vle~~~~~~g 79 (737)
....|+|||.|.+|+.+|..|++.| .+++|+|.+.+...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~s 68 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVT 68 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccc
Confidence 4567999999999999999999999 58999999866533
No 436
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.00 E-value=0.52 Score=52.06 Aligned_cols=37 Identities=41% Similarity=0.514 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFA 77 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~ 77 (737)
+...|+|||+|..|+.+|..|++.|. ++.++|.+.+-
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve 60 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVE 60 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccC
Confidence 35679999999999999999999998 89999997554
No 437
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.93 E-value=0.48 Score=50.92 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
.|.|||+|..|.+.|..|+.+|++|+++|++
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4899999999999999999999999999985
No 438
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.91 E-value=0.45 Score=51.10 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEee
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVEL 73 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~ 73 (737)
.|+|||+|.+|...|..|++.|++|.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 389999999999999999999999999987
No 439
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.82 E-value=0.47 Score=53.92 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecCCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFA 77 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~ 77 (737)
.|+|||||.+|+..|..|++.|.+|+|+|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 6999999999999999999999999999997543
No 440
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=88.66 E-value=0.45 Score=52.11 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
.|.|||+|.+|.+.|..|+++|++|.+++++
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 4999999999999999999999999999984
No 441
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.55 E-value=0.54 Score=51.90 Aligned_cols=38 Identities=34% Similarity=0.453 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFASG 79 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~~g 79 (737)
...|+|||+|..|+.+|..|++.|. +++|+|.+.+--.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~s 62 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWS 62 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccccc
Confidence 4669999999999999999999997 8999999865433
No 442
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=88.49 E-value=1.3 Score=49.95 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=42.6
Q ss_pred hCCCCCHHHHHHHHHHhCCCCCCceeHHHHHH---HHHhh---cCCCCCHHHHHHHHHH
Q psy8270 662 FGETISGEELHEILREIDSNMNGQVELDEYLQ---MMSAI---KSGHVAYSRFAKMAEM 714 (737)
Q Consensus 662 lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~---ll~~~---~~G~is~~elk~~l~~ 714 (737)
.|+..-.++++.+|+.+|.++||.|+++||+. ++... ++|.|+.+||++.+..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLGSDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 36777788999999999999999999999972 22222 5788999998887764
No 443
>KOG3555|consensus
Probab=88.38 E-value=1.6 Score=47.32 Aligned_cols=81 Identities=7% Similarity=0.100 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhcCCCCCHH
Q psy8270 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYS 706 (737)
Q Consensus 627 ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~~~G~is~~ 706 (737)
+.+.-...+..+|..+|.|.++.++.+||..+ .+...+.-++.+|..+|...||.|+-.|+...+.+-. ..-.+
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I----~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~--~pc~~ 317 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAI----ELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD--PPCQA 317 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhh----hccCchhHHHHHHhhhcccccCccccchhhhhhccCC--Ccccc
Confidence 44566788999999999999999999999875 4556778899999999999999999999998887543 33444
Q ss_pred HHHHHHH
Q psy8270 707 RFAKMAE 713 (737)
Q Consensus 707 elk~~l~ 713 (737)
++.++-+
T Consensus 318 e~~riqk 324 (434)
T KOG3555|consen 318 ELCRIQK 324 (434)
T ss_pred HHHHHHh
Confidence 5555443
No 444
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.26 E-value=0.52 Score=54.26 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
-.++|||||.+|+-.|..|++.|.+|+|+|+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 3799999999999999999999999999999764
No 445
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.24 E-value=0.53 Score=53.59 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.|+|||+|.+|+++|..|+++|++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 458999999999999999999999999999864
No 446
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.24 E-value=0.5 Score=50.77 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.|.|||+|..|.+.|..|+.+|++|+++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999999999999999999999999999864
No 447
>PRK07846 mycothione reductase; Reviewed
Probab=88.12 E-value=0.56 Score=53.70 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
-.++|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 4799999999999999999999999999999753
No 448
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.07 E-value=0.57 Score=44.28 Aligned_cols=38 Identities=37% Similarity=0.487 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFASG 79 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~~g 79 (737)
+..|+|||+|.+|+.+|..|++.|. ++.|+|.+.+-..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~ 40 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPS 40 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GG
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeec
Confidence 3469999999999999999999998 6999999866533
No 449
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.91 E-value=0.57 Score=52.45 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHhcC-CeEEEEeec
Q psy8270 44 DVLIIGGGATGSGCALDAVTRG-LKTALVELD 74 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G-~~V~vle~~ 74 (737)
+|+|||+|-+|.++|..|+++| .+|++.+|.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 5999999999999999999999 899999995
No 450
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=87.89 E-value=1.8 Score=37.57 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCC--CCCCceeHHHHHHHHHhhcC----CCCCHHHHHHHHHHhCC----cCCHHHHHHHH
Q psy8270 669 EELHEILREIDS--NMNGQVELDEYLQMMSAIKS----GHVAYSRFAKMAEMEEE----KHEKEILKKQI 728 (737)
Q Consensus 669 ~ev~~i~~~~D~--d~dG~I~feEF~~ll~~~~~----G~is~~elk~~l~~lg~----~ls~~el~~~i 728 (737)
+++++.|..+|. +++|.|+++||..+++.... -..+.+++..++..++. .++-+++-.++
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 457788999999 89999999999999875211 11345666666666522 35555554433
No 451
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.84 E-value=0.53 Score=50.30 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
.|.|||+|.+|.+.|..|+.+|++|+++|.+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence 4999999999999999999999999999975
No 452
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=87.80 E-value=1.6 Score=38.99 Aligned_cols=53 Identities=9% Similarity=0.269 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCcCCHHHHHHHHc-cccCCCC
Q psy8270 671 LHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKKQIS-VERSGGG 736 (737)
Q Consensus 671 v~~i~~~~D~d~dG~I~feEF~~ll~~~~~G~is~~elk~~l~~lg~~ls~~el~~~i~-~D~ngDG 736 (737)
+-.+|..+. ..+++++..||..++.. ||-.+++. .-++..++++|+ +|.|+||
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~---------Elp~~l~~---~~d~~~vd~im~~LD~n~Dg 63 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEK---------EFSEFLKN---QNDPMAVDKIMKDLDDCRDG 63 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHH---------HhHHHHcC---CCCHHHHHHHHHHhCCCCCC
Confidence 445666776 34557888888888864 55555543 346788888888 9999987
No 453
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=87.77 E-value=0.59 Score=53.49 Aligned_cols=34 Identities=26% Similarity=0.151 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
-.++|||||.+|+-.|..|+..|.+|+|+++++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 3799999999999999999999999999999753
No 454
>KOG4578|consensus
Probab=87.74 E-value=0.45 Score=51.12 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhcCCCCceeeHHHHHH---HHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHh
Q psy8270 632 INQYIKRFQIMDKERKGYVSINDIRR---GLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697 (737)
Q Consensus 632 ~~~l~~~F~~fD~d~~G~Is~~eL~~---~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~ 697 (737)
..-+...|..+|+|+++.|+..|.+. ++.+-. -..+-.+++++-+|.|+|.+|+|.|++..+..
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34567789999999999999998654 444422 33455788999999999999999999987643
No 455
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.74 E-value=0.68 Score=46.11 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=30.2
Q ss_pred EEEECCChhHHHHHHHHHhcCC-eEEEEeecCCC
Q psy8270 45 VLIIGGGATGSGCALDAVTRGL-KTALVELDDFA 77 (737)
Q Consensus 45 vvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~ 77 (737)
|+|||+|..|+.+|..|++.|. +++++|.+.+-
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~ 35 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVE 35 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 8999999999999999999998 59999998654
No 456
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.70 E-value=0.86 Score=43.32 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=30.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCe-EEEEeec
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLK-TALVELD 74 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~-V~vle~~ 74 (737)
+.-.++|||+|-+|-++++.|+..|.+ |+|+-|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 456799999999999999999999987 9999884
No 457
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=87.66 E-value=3.2 Score=40.60 Aligned_cols=78 Identities=9% Similarity=0.256 Sum_probs=55.2
Q ss_pred HHHHHhhhcCCCCceeeHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHHhhc-CCCC---CHHH
Q psy8270 635 YIKRFQIMDKERKGYVSINDIRRGLKNFG---ETISGEELHEILREIDSNMNGQVELDEYLQMMSAIK-SGHV---AYSR 707 (737)
Q Consensus 635 l~~~F~~fD~d~~G~Is~~eL~~~L~~lg---~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~~~~-~G~i---s~~e 707 (737)
+...|..|-..+...|+...|..+|+..+ -.++...+.-+|..+-..+..+|+|++|+..+..+. ..+. +.++
T Consensus 4 ~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~~~~ 83 (154)
T PF05517_consen 4 VFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSSAEE 83 (154)
T ss_dssp HHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTHHHH
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcccccHHH
Confidence 34445445556667899999999999975 468889999999998766667899999999998762 1122 4555
Q ss_pred HHHHH
Q psy8270 708 FAKMA 712 (737)
Q Consensus 708 lk~~l 712 (737)
+.+.+
T Consensus 84 ~~~kl 88 (154)
T PF05517_consen 84 LKEKL 88 (154)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 458
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.62 E-value=0.77 Score=43.78 Aligned_cols=35 Identities=34% Similarity=0.589 Sum_probs=31.3
Q ss_pred EEEECCChhHHHHHHHHHhcCC-eEEEEeecCCCCC
Q psy8270 45 VLIIGGGATGSGCALDAVTRGL-KTALVELDDFASG 79 (737)
Q Consensus 45 vvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~~g 79 (737)
|+|||.|.+|+.+|..|++.|. +++++|.+.+-..
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~ 37 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELS 37 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcc
Confidence 8999999999999999999998 7999999866533
No 459
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=87.48 E-value=1 Score=42.01 Aligned_cols=30 Identities=13% Similarity=0.353 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy8270 666 ISGEELHEILREIDSNMNGQVELDEYLQMM 695 (737)
Q Consensus 666 ~s~~ev~~i~~~~D~d~dG~I~feEF~~ll 695 (737)
.-..++...|..+|.|+||.|+.+|+..++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 445678999999999999999999998764
No 460
>PRK06153 hypothetical protein; Provisional
Probab=87.44 E-value=0.66 Score=51.83 Aligned_cols=62 Identities=27% Similarity=0.222 Sum_probs=42.7
Q ss_pred ccccccCccccCCCCCCch---HHHhhhccCCcccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCC
Q psy8270 13 FAAEQASPLRAKRPLPPRE---DQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFA 77 (737)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~ 77 (737)
...+..|++...-.+..|. .....| ++..|+|||.|.+|+.+|..|++.|. ++.|+|.+.+-
T Consensus 147 ~~~~~~svf~y~dt~s~R~~i~~~q~kL---~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve 212 (393)
T PRK06153 147 EDAEEDSVFNYPDTASSRAGIGALSAKL---EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFL 212 (393)
T ss_pred CCcccCCceehhhhhccccChHHHHHHH---hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEec
Confidence 3444455555444443441 112233 34679999999999999999999997 79999998654
No 461
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=87.18 E-value=0.67 Score=52.42 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFA 77 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~ 77 (737)
-.|+|||||.+|+-+|..|++.|.+|+++++++..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 47999999999999999999999999999997643
No 462
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=87.17 E-value=0.74 Score=47.16 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
-.|+|||||.+|...+..|.+.|.+|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36999999999999999999999999999874
No 463
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.13 E-value=0.72 Score=50.19 Aligned_cols=32 Identities=34% Similarity=0.577 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhcC--CeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRG--LKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G--~~V~vle~~~ 75 (737)
.|.|||+|.+|+++|+.|+.+| ..|+++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 4899999999999999999999 4799999863
No 464
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.11 E-value=0.81 Score=48.05 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFASG 79 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~~g 79 (737)
+...|+|||+|..|+.+|..|++.|. +++++|.+.+--.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~s 62 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLS 62 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccccc
Confidence 34679999999999999999999996 7999999866533
No 465
>KOG1029|consensus
Probab=86.88 E-value=0.77 Score=54.23 Aligned_cols=68 Identities=26% Similarity=0.460 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCceeeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCceeHHHHHHHHH
Q psy8270 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696 (737)
Q Consensus 627 ls~ee~~~l~~~F~~fD~d~~G~Is~~eL~~~L~~lg~~~s~~ev~~i~~~~D~d~dG~I~feEF~~ll~ 696 (737)
++....-++.+.|+.+|+...|+++-..-+.+|-..+ +++..+..|+.--|.|+||+++-+||+-.|.
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 3445556799999999999999999999999988765 7777899999999999999999999986554
No 466
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.85 E-value=0.69 Score=52.68 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
-.++|||||.+|+-.|..|++.|.+|+|+++.+.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3699999999999999999999999999999754
No 467
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=86.69 E-value=0.76 Score=52.53 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
-.++|||||.+|+-.|..|++.|.+|+|+|+.+.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 209 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4699999999999999999999999999999753
No 468
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.53 E-value=0.84 Score=46.61 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=29.8
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
.-.|+|||||-+|...|..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 346999999999999999999999999999763
No 469
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=86.43 E-value=0.78 Score=52.39 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFA 77 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~ 77 (737)
-.++|||||.+|+-.|..|++.|.+|+++++.+..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 46999999999999999999999999999997543
No 470
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.25 E-value=0.79 Score=51.23 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=30.6
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
..+|+|||+|.+|..+|..|...|.+|+++|++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 456999999999999999999999999999985
No 471
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.21 E-value=0.81 Score=51.98 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
.--|+|+|.|.+|..+|..|...|.+|+++|+++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 34699999999999999999999999999998753
No 472
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=86.20 E-value=0.93 Score=44.41 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=28.9
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEee
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVEL 73 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~ 73 (737)
.-.|+|||||-+|..-|..|.+.|.+|+|+..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 34599999999999999999999999999953
No 473
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=86.07 E-value=0.85 Score=49.59 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHHhcCC-eEEEEee
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGL-KTALVEL 73 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~-~V~vle~ 73 (737)
.|.|||+|.+|+++|+.|+.+|+ +|+++|.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999887 8999998
No 474
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=85.81 E-value=1.1 Score=44.25 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
..|||+|+|.+|..+|.-|...|.+|+++|..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 56999999999999999999999999999985
No 475
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.71 E-value=1.2 Score=40.50 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 45 VLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 45 vvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
|||+|.|-.|...|-.|.+.+.+|+++|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999974
No 476
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=85.66 E-value=0.92 Score=51.92 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.|||||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 369999999999999999999999999999864
No 477
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.65 E-value=1.1 Score=45.79 Aligned_cols=37 Identities=35% Similarity=0.454 Sum_probs=32.8
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFA 77 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~ 77 (737)
.+..|+|||.|.+|+.+|..|++.|. +++++|.+.+-
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve 57 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD 57 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEc
Confidence 35679999999999999999999997 89999997654
No 478
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.64 E-value=0.95 Score=49.01 Aligned_cols=32 Identities=34% Similarity=0.623 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.|.|||+|..|.+.|..|+.+|++|+++|++.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 49999999999999999999999999999753
No 479
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.63 E-value=1.1 Score=46.26 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCCe-EEEEeecCCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGLK-TALVELDDFAS 78 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~~-V~vle~~~~~~ 78 (737)
....|+|||+|.+|+.+|..|++.|.. ++++|.+.+-.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~ 65 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEP 65 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEecc
Confidence 346799999999999999999999984 99999986543
No 480
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.55 E-value=0.96 Score=48.64 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 45 VLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 45 vvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
|.|||+|..|.+.|..|+.+|++|.++|++.
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 9999999999999999999999999999853
No 481
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.43 E-value=0.98 Score=49.27 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
.|.|||+|..|.+.|..|++.|++|.++.|+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 3899999999999999999999999999985
No 482
>PRK04148 hypothetical protein; Provisional
Probab=85.32 E-value=1.1 Score=42.92 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=30.3
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
.-.+++||.| .|.+.|..|++.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3459999999 999999999999999999998753
No 483
>PRK08328 hypothetical protein; Provisional
Probab=85.31 E-value=1.1 Score=46.60 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=31.8
Q ss_pred cccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFA 77 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~ 77 (737)
...|+|||+|..|+.+|..|++.|. ++.++|.+.+-
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 4669999999999999999999997 69999887654
No 484
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=85.29 E-value=0.96 Score=51.79 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
-.++|||||.+|+-.|..|++.|.+|+++++.+.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 3699999999999999999999999999998653
No 485
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=85.26 E-value=0.98 Score=51.85 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecCCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFA 77 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~~ 77 (737)
.++|||||.+|+--|..+++-|.+|+|||+.+..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4999999999999999999999999999997644
No 486
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=85.21 E-value=0.98 Score=52.01 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
-.|+|||||.+|+-+|..|++.|.+|+|+++.+.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 3799999999999999999999999999999753
No 487
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.06 E-value=1 Score=49.18 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
.|.|||+|..|.+.|..|+++|++|.+++++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4999999999999999999999999999985
No 488
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=84.74 E-value=1.1 Score=49.49 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHhcCCe-EEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLK-TALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~-V~vle~~~ 75 (737)
.|||||+|.+|+-+|..|.++|.+ |+|+++.+
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 699999999999999999999997 99999864
No 489
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=84.74 E-value=0.79 Score=41.45 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=30.6
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.-.|+|||||-+|..-+..|.+.|.+|+|+....
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4569999999999999999999999999998864
No 490
>PRK12831 putative oxidoreductase; Provisional
Probab=84.69 E-value=1.1 Score=51.72 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.|||||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 379999999999999999999999999999864
No 491
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.59 E-value=1.1 Score=48.38 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeec
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELD 74 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~ 74 (737)
.|.|||+|..|...|..|+++|++|.+++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 4899999999999999999999999999985
No 492
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=84.57 E-value=1.1 Score=47.29 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHHhcC-----------CeEEEEeecCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRG-----------LKTALVELDDFA 77 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G-----------~~V~vle~~~~~ 77 (737)
+...|+|||+|.+|+.++-.|++.| .+++|+|-+.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve 57 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS 57 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence 6788999999999999999999974 389999987654
No 493
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=84.55 E-value=1.1 Score=52.33 Aligned_cols=32 Identities=34% Similarity=0.543 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.|.|||+|..|...|..|+.+|++|+++|++.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 39999999999999999999999999999863
No 494
>PRK10262 thioredoxin reductase; Provisional
Probab=84.49 E-value=1.2 Score=48.32 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 379999999999999999999999999999975
No 495
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=84.28 E-value=1 Score=51.11 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
.|.|||.|.+|+..|..|+++|++|+++|++.
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 48999999999999999999999999999864
No 496
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=84.20 E-value=1.2 Score=50.87 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHhcCCeEEEEeecCC
Q psy8270 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76 (737)
Q Consensus 44 dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~~ 76 (737)
.++|||||.+|+-.|..|++.|.+|+|+++.+.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 699999999999999999999999999998654
No 497
>PRK13748 putative mercuric reductase; Provisional
Probab=84.12 E-value=1.2 Score=52.14 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 43 ~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
-.++|||||.+|+-.|..|++.|.+|+|++++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 369999999999999999999999999999864
No 498
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.11 E-value=1.3 Score=46.60 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHHhcCC-eEEEEeecCCC
Q psy8270 41 EEFDVLIIGGGATGSGCALDAVTRGL-KTALVELDDFA 77 (737)
Q Consensus 41 ~~~dvvIiG~G~~G~~~A~~La~~G~-~V~vle~~~~~ 77 (737)
+...|+|||.|..|+.+|..|+..|. +++|+|.+.+-
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve 68 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVS 68 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEC
Confidence 35779999999999999999999996 79999997554
No 499
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=84.06 E-value=2.3 Score=47.31 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHCCcEEecCceEEEEEEcCCCcEEEEEEeecccCeeEEEEcCEEEecCCCCh
Q psy8270 452 MCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513 (737)
Q Consensus 452 ~v~al~~~A~~~Gve~~~nt~V~~L~~d~~~~V~gV~~~~~~tg~~~~I~Ad~VV~a~Gaws 513 (737)
+..+|++.+++.|++|+++++|++|..+ +++++.+. .. +++ .+.||.||+|+.++.
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~~~-~~--~g~--~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEAN-AGGIRALV-LS--GGE--TLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEEc-CCcceEEE-ec--CCc--cccCCEEEEcCCHHH
Confidence 3345777778889999999999999987 55543322 21 233 588999999987654
No 500
>KOG2304|consensus
Probab=84.02 E-value=0.96 Score=46.71 Aligned_cols=34 Identities=41% Similarity=0.560 Sum_probs=31.2
Q ss_pred cccEEEECCChhHHHHHHHHHhcCCeEEEEeecC
Q psy8270 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75 (737)
Q Consensus 42 ~~dvvIiG~G~~G~~~A~~La~~G~~V~vle~~~ 75 (737)
--.|.|||+|..|++.|--.+..|+.|.++|++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 4569999999999999999999999999999964
Done!