RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8270
(737 letters)
>gnl|CDD|215257 PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.
Length = 627
Score = 287 bits (737), Expect = 1e-87
Identities = 117/220 (53%), Positives = 150/220 (68%), Gaps = 10/220 (4%)
Query: 393 EIPYYWVGIKAYDFVAGSKTVKSSYYLSKKNALELFPMI---RGDK-LCGAIVYYDGQQD 448
E+PYYW G+KAYD VAG + + S Y S K +LELFP + D L G +VYYDGQ +
Sbjct: 171 EVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYDGQMN 230
Query: 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDK-GKVRGAHLRDELTGKEWDLKAKSVIN 507
D+R+ +A+A TA GA V N+ V +LIKD+ G++ GA +RD LTGKE+D+ AK V+N
Sbjct: 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN 290
Query: 508 ATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWLK 567
A GPF D +R+M DG+ + + PSSGVHIVLP YYSP+ MGL+ P T DGRV+F LPWL
Sbjct: 291 AAGPFCDEVRKMADGKAKPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLG 350
Query: 568 HTIAGTTDLPCDVTHHPKPTEDEIMFILQEKQLKEASDFL 607
T+AGTTD +T P+P EDEI FI L SD+L
Sbjct: 351 RTVAGTTDSKTPITMLPEPHEDEIQFI-----LDAISDYL 385
Score = 216 bits (551), Expect = 6e-61
Identities = 94/266 (35%), Positives = 138/266 (51%), Gaps = 70/266 (26%)
Query: 119 IRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSPSNLVTIAGGKWTTYRAMASES 178
+RR DVLSAWSGIRPL DP+ A T+SI+R+H+V P LVTI GGKWTTYR+MA ++
Sbjct: 389 VRRSDVLSAWSGIRPLAVDPS-AKSTESISRDHVVCEEPDGLVTITGGKWTTYRSMAEDA 447
Query: 179 IDALIE-GKFNKAGAEYPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKPK 237
+DA I+ GK +
Sbjct: 448 VDAAIKSGKLSPTNG--------------------------------------------- 462
Query: 238 YRDCQTDGLLIEGAHGWTPTMYIRLVQDF--------------GLECETAQHLSNSYGDR 283
C T L + GA G+ P+++ +L Q + ++ A+HL+++YG R
Sbjct: 463 ---CVTTDLPLVGAEGYEPSLFTQLAQQYVRMKRTYGGKVVPGAMDTAAAKHLAHAYGGR 519
Query: 284 AFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLAFLNV 342
A VA++AQ G +GK++ +P+++AE+ Y R EY +A+D +ARR RLAFL+
Sbjct: 520 ADRVAEIAQNEG-----LGKRLAHGYPFLEAEVAYCARHEYCESAVDFIARRTRLAFLDT 574
Query: 343 QAAQEALPMIIEIMAEELKWSKEEQE 368
AA ALP ++EI+A E W K ++
Sbjct: 575 DAAVRALPRVVEILAAEHGWDKSRKK 600
Score = 155 bits (394), Expect = 6e-40
Identities = 58/115 (50%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
Query: 6 PLGVKPVFAAEQASPLRAKRPLPPREDQIKSL---QSGEEFDVLIIGGGATGSGCALDAV 62
G P + + +P R Q +L + E DVL++GGGATG+G ALDA
Sbjct: 32 DKGGGPALDSLRDRIADPNASVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAA 91
Query: 63 TRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIMNLDIEQYRMVKEALHER 117
TRGL+ LVE +DF+SGTSSRSTKLIHGGVRYL+KA+ LD Q ++V AL ER
Sbjct: 92 TRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEER 146
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 201 bits (514), Expect = 1e-56
Identities = 76/236 (32%), Positives = 121/236 (51%), Gaps = 7/236 (2%)
Query: 366 EQEAAQKALPMIIEIMAEELKWSKEEQEIPYYWVGIKAYDFVAGS-KTVKSSYYLSKKNA 424
E+E + P ++E + L ++ G+ YD +AG K + +S L K A
Sbjct: 79 EREVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEA 138
Query: 425 LELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKV 484
L L P ++ D L GA Y DG DDAR+ A A A HGA + + RV +L ++ G V
Sbjct: 139 LPLEPALKKDGLKGAFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRRE--GGV 196
Query: 485 RGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQ--VQKICVPSSGVHIVLPGYY 542
G + D TG+ ++++A++V+NA GP+ D I M + PS G H+V+ +
Sbjct: 197 WGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSHLVVDKKF 256
Query: 543 SPDQMGLLDPSTSDGRVIFFLPWLKHTIAGTTDLPCD-VTHHPKPTEDEIMFILQE 597
P +++ DGR++F +P+ T+ GTTD D P+ TE+EI ++L
Sbjct: 257 -PINQAVINRCRKDGRIVFAIPYEGKTLIGTTDTDYDGDPEDPRITEEEIDYLLDA 311
Score = 126 bits (318), Expect = 2e-30
Identities = 77/262 (29%), Positives = 107/262 (40%), Gaps = 64/262 (24%)
Query: 119 IRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSPSNLVTIAGGKWTTYRAMASES 178
+ R D+LS ++G+RPLV D DT +I+R+H++
Sbjct: 320 LTREDILSTYAGVRPLVDD--GDDDTSAISRDHVLFDHA--------------------- 356
Query: 179 IDALIEGKFNKAGAEYPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKPKY 238
AG L+T+AGGK TTYR MA +++DA+ E + P
Sbjct: 357 ---------ELAG-------------LLTVAGGKLTTYRKMAEDALDAVCEKLGIRPP-- 392
Query: 239 RDCQTDGLLIEGAHGWTPTMYIRLV-----QDFGLECETAQHLSNSYGDRAFAVAKLAQL 293
C T L + G L GL A+HL+ YG RA + LA +
Sbjct: 393 --CTTADLPLPGGDE--NAALAELAAALGAAYPGLPSALARHLARLYGSRAELLLALAAV 448
Query: 294 TGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLAFLNVQAAQEALPMI 352
H +AE+RY VR E A T D++ARR +L L A +
Sbjct: 449 LA------DLGEHALSDLYEAELRYLVRHEMALTLEDILARRTKLGLLLADVLA-AADAV 501
Query: 353 IEIMAEELKWSKEEQEAAQKAL 374
+MAEEL WS E A +AL
Sbjct: 502 AAVMAEELGWSAERPAAEGQAL 523
Score = 125 bits (317), Expect = 2e-30
Identities = 54/92 (58%), Positives = 63/92 (68%), Gaps = 12/92 (13%)
Query: 30 REDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIH 89
RE + L+ EEFDV++IGGG TG+G A DA RGLK ALVE D ASGTSSRSTKLIH
Sbjct: 1 RERALTRLRM-EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIH 59
Query: 90 GGVRYLQKAIMNLDIEQY--RMVKEALHERSI 119
GG+RYL EQY +V+EAL ER +
Sbjct: 60 GGLRYL---------EQYEFSLVREALAEREV 82
>gnl|CDD|237027 PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.
Length = 508
Score = 113 bits (285), Expect = 2e-26
Identities = 44/81 (54%), Positives = 51/81 (62%), Gaps = 11/81 (13%)
Query: 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKA 98
E +D+L+IGGG G+G A DA RGL L E DD AS TSS STKLIHGG+RYL
Sbjct: 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYL--- 59
Query: 99 IMNLDIEQY--RMVKEALHER 117
E Y R+V+EAL ER
Sbjct: 60 ------EHYEFRLVREALAER 74
Score = 87.1 bits (217), Expect = 6e-18
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 25/167 (14%)
Query: 441 VYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDL 500
Y D DDAR+ + A A GA + RV + +++ L D TGK + +
Sbjct: 146 EYSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWH--VTLEDTATGKRYTV 203
Query: 501 KAKSVINATGPFTDSIRRMDDGQVQKICVPSSGV------HIVLPGYYSPDQMGLLDPST 554
+A++++NA GP+ +DDG G+ HIV+P + DQ +L
Sbjct: 204 RARALVNAAGPWVKQF--LDDGLGLP---SPYGIRLVKGSHIVVPRLFDHDQAYIL--QN 256
Query: 555 SDGRVIFFLPWL-KHTIAGTTDLPCDVTHHPKP-----TEDEIMFIL 595
DGR++F +P+ T+ GTTD+ + P +E+EI ++
Sbjct: 257 PDGRIVFAIPYEDDFTLIGTTDVE----YKGDPAKVAISEEEIDYLC 299
Score = 64.8 bits (159), Expect = 8e-11
Identities = 59/248 (23%), Positives = 93/248 (37%), Gaps = 78/248 (31%)
Query: 117 RSIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSPSN----LVTIAGGKWTTYR 172
+ + DV+ +SG+RPL D ++ Q+I R++ + + N L+++ GGK TTYR
Sbjct: 308 KQLTPADVVWTYSGVRPLCDD--ESDSAQAITRDYTLELDDENGGAPLLSVFGGKITTYR 365
Query: 173 AMASESIDALIEGKFNKAGAEYPNLLLGIIFNLVTIAGGKWTTYRA-----MASESIDAL 227
+A +++ L P G WT + DAL
Sbjct: 366 KLAEHALEKL--------APYLPQ------------MGPAWTAGAPLPGGDFPGDRFDAL 405
Query: 228 IEAVPELKPKYRDCQTDGLLIEGAHGWTPTMYIRLVQDFGLECETAQHLSNSYGDRAFAV 287
A + + W P A+ L+ +YG RA +
Sbjct: 406 AAA-----------------LRRRYPWLPE-------------ALARRLARAYGTRAERL 435
Query: 288 ----AKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGV-REYARTAIDMVARRLRLA-FLN 341
LA L G+ Y +AE+ Y V E+ARTA D++ RR +L L+
Sbjct: 436 LGGATSLADL--------GEHFGHGL-Y-EAEVDYLVEHEWARTAEDILWRRTKLGLRLD 485
Query: 342 VQAAQEAL 349
Q L
Sbjct: 486 -AEQQARL 492
>gnl|CDD|237365 PRK13369, PRK13369, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 502
Score = 104 bits (261), Expect = 2e-23
Identities = 48/98 (48%), Positives = 59/98 (60%), Gaps = 18/98 (18%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIM 100
E +D+ +IGGG G+G A DA RGLK L E DD A GTSSRS KL+HGG+RYL
Sbjct: 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYL----- 59
Query: 101 NLDIEQY--RMVKEALHERSIRRGDVL--SAWSGIRPL 134
E Y R+V+EAL ER +VL +A I P+
Sbjct: 60 ----EYYEFRLVREALIER-----EVLLAAAPHIIWPM 88
Score = 68.8 bits (169), Expect = 4e-12
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 63/239 (26%)
Query: 117 RSIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSPSNLVTIAGGKWTTYRAMAS 176
+RR DV+ ++SG+RPL D AG+ ++ R+++
Sbjct: 307 EKLRREDVVHSFSGVRPLFDD--GAGNPSAVTRDYVF----------------------- 341
Query: 177 ESIDALIEGKFNKAGAEYPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELKP 236
+ P L+++ GGK TT+R +A +++ L P++
Sbjct: 342 ---------DLDAETGGAP---------LLSVFGGKITTFRKLAEHALERLKPFFPQMGG 383
Query: 237 KYRDCQTDGL-LIEGAHGWTPTMYIRLVQDFG-----LECETAQHLSNSYGDRAFAVAKL 290
+ T G L G + D L A + YG RA V
Sbjct: 384 DW----TAGAPLPGGDIANAD--FDTFADDLRDRYPWLPRPLAHRYARLYGTRAKDVLGG 437
Query: 291 AQLTGKRWPIIGKKIHPEFPYIDAEIRYGV-REYARTAIDMVARRLRLAFLNVQAAQEA 348
A + +G+ +AE+RY V RE+ARTA D++ RR +L L++ AA+ A
Sbjct: 438 A----RSLEDLGRHFGGGL--TEAEVRYLVAREWARTAEDILWRRTKLG-LHLSAAERA 489
Score = 65.4 bits (160), Expect = 5e-11
Identities = 69/244 (28%), Positives = 104/244 (42%), Gaps = 32/244 (13%)
Query: 366 EQEAAQKALPMIIEIMAEELKWSKEEQEIPYYWV--GIKAYDFVAGSKTVKSSYYLSKKN 423
E+E A P II M L S E++ P + V G+ YD + G K + + L +
Sbjct: 73 EREVLLAAAPHIIWPMRFVLPHSPEDR--PAWLVRLGLFLYDHLGGRKRLPGTRTLDLRR 130
Query: 424 ALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGK 483
E P+ Y D DDAR+ + AL A GAT+ R + ++ G
Sbjct: 131 DPEGAPLKPEYTK--GFEYSDCWVDDARLVVLNALDAAERGATILTRTRCVSARRE--GG 186
Query: 484 VRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGV------HIV 537
+ RD G+ ++A++++NA GP+ + G S V HIV
Sbjct: 187 LWRVETRDA-DGETRTVRARALVNAAGPWVTDVIHRVAGS-----NSSRNVRLVKGSHIV 240
Query: 538 LPGYYSPDQMGLLDPSTSDGRVIFFLPWLKH-TIAGTTDL-----PCDVTHHPKPTEDEI 591
+P ++ Q L D RVIF P+ T+ GTTD+ P DV E+EI
Sbjct: 241 VPKFWDGAQAYLF--QNPDKRVIFANPYEGDFTLIGTTDIAYEGDPEDVA----ADEEEI 294
Query: 592 MFIL 595
++L
Sbjct: 295 DYLL 298
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 73.9 bits (182), Expect = 1e-14
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIM 100
DV++IGGG G A + RGL L+E D ASG S R+ L+H G+R + ++
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLL 57
Score = 58.9 bits (143), Expect = 1e-09
Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 19/141 (13%)
Query: 377 IIEIMAEELKWSKEEQEIPYYWVGIKAYDFVAGSKTVKS-------SYYLSKKNALELFP 429
+ + EEL + + + + A + + L + EL P
Sbjct: 67 LWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELLDAEELRELEP 126
Query: 430 MIRGDKLCGAIVYYDGQQDDARM-CLAIALTATRHGATVANHVRVTNLIKDDKG-KVRGA 487
+ + G + Y DG D A+A A G + VT L ++ G V
Sbjct: 127 GLS-PGIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGLEREGGGVTVETE 185
Query: 488 HLRDELTGKEWDLKAKSVINA 508
++A V+NA
Sbjct: 186 DGE---------IRADKVVNA 197
>gnl|CDD|234191 TIGR03377, glycerol3P_GlpA, glycerol-3-phosphate dehydrogenase,
anaerobic, A subunit. Members of this protein family
are the A subunit, product of the glpA gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 516
Score = 73.9 bits (182), Expect = 1e-13
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 7/179 (3%)
Query: 419 LSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIK 478
+ AL L P + D L GA+ DG D R+ A L A HGA + + +VT LI+
Sbjct: 98 IDPAEALRLEPNLNPD-LIGAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIR 156
Query: 479 DDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVL 538
+ G+V G + D TG+E ++A+ VINA G + I ++ P+ G +++
Sbjct: 157 EG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIR--MFPAKGALLIM 213
Query: 539 PGYYSPDQMGLLDPSTSDGRVIFFLPWLKHTIAGTTDLPCDVTHHPKPTEDEIMFILQE 597
+ + SD + +P +I GTT D T++E+ +L+E
Sbjct: 214 NHRINNTVINRCRKP-SDADI--LVPGDTISIIGTTSERIDDPDDLPVTQEEVDVLLRE 269
Score = 49.6 bits (119), Expect = 5e-06
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 124 VLSAWSGIRPLVSDPNKAGDTQSIAR-----NHIVHVSPSNLVTIAGGKWTTYRAMASES 178
+L A++G+RPLV+ ++I+R +H +TI GGK TTYR MA +
Sbjct: 282 ILRAFAGVRPLVAVD-DDPSGRNISRGIVLLDHAERDGLPGFITITGGKLTTYRLMAEWA 340
Query: 179 IDALIE 184
D + +
Sbjct: 341 TDVVCK 346
Score = 45.4 bits (108), Expect = 9e-05
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 57 CALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRY 94
AL RGL+ L+E D A GT+ R+ L+H G RY
Sbjct: 4 LAL----RGLRCILLEQGDLAHGTTGRNHGLLHSGARY 37
>gnl|CDD|236847 PRK11101, glpA, sn-glycerol-3-phosphate dehydrogenase subunit A;
Provisional.
Length = 546
Score = 70.0 bits (172), Expect = 2e-12
Identities = 29/53 (54%), Positives = 36/53 (67%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRY 94
E DV+IIGGGATG+G A D RGL+ LVE D A+G + R+ L+H G RY
Sbjct: 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARY 58
Score = 62.3 bits (152), Expect = 4e-10
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 419 LSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIK 478
+ + AL L P + L GA+ DG D R+ A L A HGA + + VT LI+
Sbjct: 119 IDPQQALILEPAVNPA-LIGAVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIR 177
Query: 479 DDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDD 521
+ V G +RD LTG+ ++ A V+NA G + I D
Sbjct: 178 -EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYAD 219
Score = 44.6 bits (106), Expect = 2e-04
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 118 SIRRGDVLSAWSGIRPLV-SDPNKAGDTQSIARNHIV---HVSPSNL---VTIAGGKWTT 170
+ + +L A++G+RPLV SD + +G ++++R IV H L +TI GGK T
Sbjct: 299 VMAKTRILRAYAGVRPLVASDDDPSG--RNVSRG-IVLLDHAERDGLDGFITITGGKLMT 355
Query: 171 YRAMASESIDALIEGKFNK 189
YR MA + DA+ K
Sbjct: 356 YRLMAEWATDAVCR-KLGN 373
Score = 31.9 bits (73), Expect = 1.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 204 NLVTIAGGKWTTYRAMASESIDALIEAVPELKPKYRDCQT 243
+TI GGK TYR MA + DA+ + +P C T
Sbjct: 344 GFITITGGKLMTYRLMAEWATDAVCRKLGNTRP----CTT 379
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 56.8 bits (138), Expect = 2e-10
Identities = 20/60 (33%), Positives = 45/60 (75%)
Query: 637 KRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
+ F++ DK+ G +S ++++ LK+ GE +S EE+ E++RE+D + +G+++ +E+L++M+
Sbjct: 4 EAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
Score = 29.8 bits (68), Expect = 0.53
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 670 ELHEILREIDSNMNGQVELDEYLQMMSAI 698
EL E R D + +G + DE + ++
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSL 29
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 58.9 bits (143), Expect = 3e-10
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 614 MVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHE 673
M ++ S LT+E+I + + FQ+ D++ G + N++ + L++ G S E+++
Sbjct: 1 MRSKISDLLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINK 60
Query: 674 ILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEE 717
+ EID+ N V+ E+L +M S K + EEE
Sbjct: 61 LFEEIDAG-NETVDFPEFLTVM----------SVKLKRGDKEEE 93
Score = 57.3 bits (139), Expect = 1e-09
Identities = 21/68 (30%), Positives = 46/68 (67%)
Query: 633 NQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYL 692
+ + F++ DK+ GY+SI ++RR LK+ GE +S EE+ ++L+E D + +G+++ +E+
Sbjct: 92 EELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFK 151
Query: 693 QMMSAIKS 700
+++ +
Sbjct: 152 KLIKDSPT 159
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 54.7 bits (132), Expect = 8e-10
Identities = 16/60 (26%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 640 QIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREI----DSNMNGQVELDEYLQMM 695
+++DK+ GY+ + ++R+ LK G ++ EE+ E++ D + +G++ +E+L+ M
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 56.3 bits (136), Expect = 2e-09
Identities = 27/91 (29%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 605 DFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGE 664
DF E ++ R +D ++EEI + F++ D++ G++S ++R + N GE
Sbjct: 65 DF--PEFLTLMARKMKD----TDSEEEI---KEAFKVFDRDGNGFISAAELRHVMTNLGE 115
Query: 665 TISGEELHEILREIDSNMNGQVELDEYLQMM 695
++ EE+ E++RE D + +GQ+ +E+++MM
Sbjct: 116 KLTDEEVDEMIREADVDGDGQINYEEFVKMM 146
Score = 47.8 bits (114), Expect = 2e-06
Identities = 18/74 (24%), Positives = 46/74 (62%)
Query: 623 IPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNM 682
+ LT+E+I ++ + F + DK+ G ++ ++ +++ G+ + EL +++ E+D++
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 683 NGQVELDEYLQMMS 696
NG ++ E+L +M+
Sbjct: 61 NGTIDFPEFLTLMA 74
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 49.6 bits (119), Expect = 4e-06
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 41 EEFDVLIIGGGATGSGCA--LDAVTRGLKTALVE-LDDFASGTSSRSTKLIHGGVRY 94
++DV+IIGGG G+ A L L AL+E D A +SS ++ +IH G+ Y
Sbjct: 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYY 58
Score = 46.5 bits (111), Expect = 3e-05
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 413 VKSSYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVR 472
V L K+ EL P++ + +V G D + A+A A +G + +
Sbjct: 116 VFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTE 175
Query: 473 VTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSS 532
VT I+ V + G+E L+AK VINA G + D + +M P
Sbjct: 176 VTG-IEKQSDGVFVLNTS---NGEE-TLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVR 230
Query: 533 GVHIVLPG 540
G ++VL
Sbjct: 231 GEYLVLDN 238
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 47.0 bits (112), Expect = 5e-06
Identities = 24/68 (35%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVE 687
+EEI +K F++ D ++ G +S+ +++R K GETI+ EEL E++ E D N +G++
Sbjct: 88 PREEI---LKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEIS 144
Query: 688 LDEYLQMM 695
+E+ ++M
Sbjct: 145 EEEFYRIM 152
Score = 41.6 bits (98), Expect = 3e-04
Identities = 14/81 (17%), Positives = 43/81 (53%)
Query: 617 RASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILR 676
R LT+++ + + F + D + G + +++ +++ G EE+ +++
Sbjct: 1 MRKRRSERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIA 60
Query: 677 EIDSNMNGQVELDEYLQMMSA 697
++D + +G+++ +E+L +M+
Sbjct: 61 DVDKDGSGKIDFEEFLDIMTK 81
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 47.6 bits (113), Expect = 1e-05
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIM 100
+ DV+IIGGG G A RG ++E + G + R+ GG+
Sbjct: 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNA----GGILA------ 52
Query: 101 NLDIEQYRMVKEALHERSIRRGDVLSAWSGI 131
+ L + S+ LS G
Sbjct: 53 PWASPGGELEVRPLADLSLALWRELSEELGT 83
Score = 36.0 bits (83), Expect = 0.073
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 424 ALELFPMIRGDKLCGAIVY-YDGQQDDARMCLAIALTATRHGA-TVANHVRVTNLIKDDK 481
A EL P + D +CG + G D + A+A A G + VT+L +
Sbjct: 129 AAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSL--ERD 186
Query: 482 GKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRM 519
G+V G ++A V+ A G + +
Sbjct: 187 GRVVGVETDGG------TIEADKVVLAAGAWAGELAAT 218
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 47.8 bits (114), Expect = 2e-05
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 29 PREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRS 84
P ++ + EFDV++IG GA G AL A GLK LVE ++ GT++ S
Sbjct: 3 PVVSELSPERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS 58
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 42.1 bits (100), Expect = 2e-05
Identities = 13/49 (26%), Positives = 31/49 (63%)
Query: 647 KGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
KG ++ +++R L G ++S EE+ + RE D++ +G++ +E+ ++
Sbjct: 2 KGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVLL 50
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 47.1 bits (113), Expect = 3e-05
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDD 75
E+DV++IG G G A+ A GLK A+VE +
Sbjct: 1 FAFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 43.4 bits (103), Expect = 3e-04
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80
+E+DV++IG G G A+ A GLK ALVE + GT
Sbjct: 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGT 42
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 43.4 bits (103), Expect = 3e-04
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRS 84
DV++IG G G AL+A GLK A+VE G ++ S
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWS 41
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 43.3 bits (103), Expect = 3e-04
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALV-----ELDDFASGT 80
+FDVL+IGGG G AL A G + ALV L F+SG+
Sbjct: 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQGAL-HFSSGS 44
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 43.2 bits (102), Expect = 4e-04
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELD----DFASGT 80
FDV IIGGG G C L G + A+V F+SG+
Sbjct: 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSALHFSSGS 44
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 41.9 bits (99), Expect = 0.001
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELD----DFASGT 80
FDV+IIGGG G CAL G K A++ F+SG+
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQSALHFSSGS 42
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This
family of proteins contains FAD dependent
oxidoreductases and related proteins.
Length = 415
Score = 40.6 bits (96), Expect = 0.002
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVE 72
DV+++GGG G A+ A G K LVE
Sbjct: 1 DVVVVGGGPAGVAAAIAAARLGAKVLLVE 29
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 40.8 bits (96), Expect = 0.002
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGV 92
+ +E+DV+++G GA G AL A RGL T +VE G+++RS GGV
Sbjct: 4 TVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSG----GGV 53
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 40.7 bits (95), Expect = 0.003
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASG 79
S EE+DV IIG G G A++A+ RGLK + DD + G
Sbjct: 113 SDEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIG 153
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 40.0 bits (94), Expect = 0.004
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 461 TRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF 512
G + + V +L+ DD G V G RD TG+ + +AK+VI ATG
Sbjct: 150 KFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGA 201
Score = 38.5 bits (90), Expect = 0.013
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRST 85
EFDV++IGGG G A++A GLK AL+ G + +
Sbjct: 6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQ 49
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 39.5 bits (93), Expect = 0.005
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+E+D++IIGGG G A+ A GLKTALVE
Sbjct: 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVE 34
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 39.1 bits (92), Expect = 0.007
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 43 FDVLIIGGGATGS--GCALDAVT-RGLKTALVE----LDDFASGTSSRSTKLIHGGVRYL 95
DV+I+GGG G+ AL ++ GL AL+E D G +R+ L G + L
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQL 63
Query: 96 Q 96
Sbjct: 64 A 64
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 39.1 bits (92), Expect = 0.008
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYL----- 95
+E DV+++G GA G+ A++A G + ++E A G ++ S GGV YL
Sbjct: 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALS-----GGVIYLGGGTA 73
Query: 96 -QKA 98
QKA
Sbjct: 74 VQKA 77
Score = 39.1 bits (92), Expect = 0.008
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 459 TATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKA-KSVINATGPF 512
A G + R T LI DD G+V G R G+ ++A K V+ A G F
Sbjct: 186 RAAALGVQIRYDTRATRLIVDDDGRVVGVEARRY--GETVAIRARKGVVLAAGGF 238
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 38.9 bits (91), Expect = 0.009
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 36 SLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALV 71
+L+ + +DVL++GGG G+ A+ A +GL+TA+V
Sbjct: 206 ALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMV 241
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 38.9 bits (91), Expect = 0.010
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYL----- 95
E DVL+IG GA G A+ A GLK +VE D GT++ S GG ++
Sbjct: 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWS-----GGWMWIPRNPL 65
Query: 96 -QKAIMNLDIEQYR 108
++A + DIEQ R
Sbjct: 66 ARRAGIVEDIEQPR 79
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 38.9 bits (91), Expect = 0.010
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGV 92
DVL+IG GA G A+ A GL ++E + GT++ S GGV
Sbjct: 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFS-----GGV 54
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 38.3 bits (90), Expect = 0.011
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKA 98
E D+ +IGGG G A+ G ALV R+T L+ +R+L++
Sbjct: 6 EHTDIAVIGGGPAGLAAAIALARAGASVALV--APEPPYADLRTTALLGPSIRFLERL 61
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 38.8 bits (91), Expect = 0.011
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+DV++IGGG G A+ A GLK ALVE
Sbjct: 1 AYDVIVIGGGPGGYVAAIRAAQLGLKVALVE 31
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 38.6 bits (90), Expect = 0.013
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYL 95
E +DV+++G G G AL A GL+ +VE D G+++ S GGV +L
Sbjct: 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMS-----GGVLWL 54
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 38.2 bits (90), Expect = 0.014
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80
E++DV++IG G G A A G K AL+E GT
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE-KGPLGGT 40
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 38.2 bits (90), Expect = 0.014
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 35 KSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALV 71
+ L + + +DVL++GGG G+ A+ A +G++T +V
Sbjct: 204 EELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIV 240
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 33.2 bits (77), Expect = 0.015
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 670 ELHEILREIDSNMNGQVELDEYLQMMSAI 698
EL E +E D + +G++ +E+ +++ +
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 37.9 bits (89), Expect = 0.016
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+DV++IGGGA G A+ A RG + L++
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLID 30
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 33.3 bits (77), Expect = 0.018
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 634 QYIKRFQIMDKERKGYVSINDIRRGLKNFG 663
+ + F++ DK+ GY+S ++R+ L++ G
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 37.8 bits (88), Expect = 0.019
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
E+DV+I+G G GS A GL ++E
Sbjct: 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLE 33
Score = 30.9 bits (70), Expect = 2.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 450 ARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINAT 509
A+ +A A GA + RVT +I++D G V G D +++AK VI+A
Sbjct: 95 AKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD------DEVRAKVVIDAD 148
Query: 510 GP 511
G
Sbjct: 149 GV 150
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 37.3 bits (87), Expect = 0.025
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSR 83
D++I+G G G A A RGL ++E A G S R
Sbjct: 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVR 41
Score = 33.4 bits (77), Expect = 0.36
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 415 SSYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLA--IALTATRHG-----ATV 467
L+ FP +R D L G + D + + R + A A +HG T
Sbjct: 109 RVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTA 168
Query: 468 ANHVRVTNLIKDDKGKVRGAH 488
V T ++ +G V
Sbjct: 169 VTSVE-TGTVRTSRGDVHADQ 188
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 32.7 bits (76), Expect = 0.025
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 670 ELHEILREIDSNMNGQVELDEYLQMMSAI 698
EL E R D + +G+++ +E+ ++ A+
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 36.6 bits (85), Expect = 0.031
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVE 72
DV+IIGGG G A+ GLK AL+E
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIE 29
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 37.0 bits (86), Expect = 0.032
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 36 SLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALV------------ELDDFASGTSSR 83
+ + +DVL++GGG G+ A+ A +G++T LV +++F S +
Sbjct: 205 EFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETE 264
Query: 84 STKL---IHGGVRYLQKAIMNL----DIEQYRMVKEALHERSIRRGDVLSAWSGI 131
KL + V+ +MNL +E + L E + G VL A + I
Sbjct: 265 GPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGG-LIEVELANGAVLKARTVI 318
>gnl|CDD|181552 PRK08773, PRK08773,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Validated.
Length = 392
Score = 37.1 bits (86), Expect = 0.033
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVE 72
D +I+GGG G+ CAL GL ALVE
Sbjct: 8 DAVIVGGGVVGAACALALADAGLSVALVE 36
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 36.8 bits (86), Expect = 0.044
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
++FDV++IG G G A+ A GLK A +E
Sbjct: 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIE 34
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 36.5 bits (85), Expect = 0.050
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+FDV+++GGG G+ AL GL+ AL+
Sbjct: 5 KFDVVVVGGGLVGASLALALAQSGLRVALLA 35
>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 584
Score = 36.3 bits (84), Expect = 0.055
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGV 92
E DVL++G G G AL A RGL T +VE S ST L GG+
Sbjct: 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVE----KSAHFGGSTALSGGGI 57
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 35.9 bits (84), Expect = 0.071
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76
+ +D ++IG G G A A G+K AL+E
Sbjct: 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL 39
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism, Amino
acids and amines].
Length = 380
Score = 36.0 bits (83), Expect = 0.071
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIMNL 102
FDV+++G G G A G KT L+E D S HG R ++KA
Sbjct: 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSS-----HGQSRIIRKAY--P 53
Query: 103 DIEQYRMVKEA 113
+ M+ E
Sbjct: 54 EDFYTPMMLEC 64
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 35.3 bits (82), Expect = 0.080
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ +DV+IIGGG G A+ A GLK L+
Sbjct: 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLIL 33
>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 35.3 bits (82), Expect = 0.11
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 462 RHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+ + V LI D+ +V GA D G+ + + AK+ I ATG
Sbjct: 146 KERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATG 194
>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a
family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble periplasmic
protein with four heme groups, a non-covalently bound
FAD, and essentially unidirectional fumarate reductase
activity. At least seven distinct members of this family
are found in Shewanella oneidensis, a species able to
use a wide variety of pathways for respiraton [Energy
metabolism, Electron transport].
Length = 439
Score = 35.4 bits (82), Expect = 0.12
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 472 RVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF 512
+V +LI+DD+G V G ++ + G AK+V+ ATG F
Sbjct: 152 KVEDLIQDDQGTVVGVVVKGKGKGIYI-KAAKAVVLATGGF 191
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 295
Score = 34.6 bits (80), Expect = 0.13
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76
+DV+++G G G+ A +GL+ L+E F
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34
>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 35.0 bits (81), Expect = 0.13
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVE 72
DVLI+G G TG A++ RG+ L+E
Sbjct: 5 DVLIVGAGPTGLTLAIELARRGVSFRLIE 33
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 34.9 bits (81), Expect = 0.16
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 44 DVLIIGGGATGSGCALD-AVTRGLKTALVELDDF----ASGTSSRSTKLIHGGVRYLQK- 97
D++I+GGG G AL A + GLK AL+E G +R + L +R L+K
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSALSAASIRLLEKL 60
Query: 98 ----AIMNLDIEQYR 108
I + R
Sbjct: 61 GVWDKIEPARAQPIR 75
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with
an active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 34.5 bits (80), Expect = 0.17
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVE 72
DV+IIG G G CA++A GL ++E
Sbjct: 1 DVIIIGAGPCGLACAIEAQKAGLSYLIIE 29
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 34.8 bits (80), Expect = 0.18
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 641 IMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
I+D + G +S ++ +K FG ++ + E+ + D N +G V +DE +++
Sbjct: 187 IVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLA 242
>gnl|CDD|237226 PRK12845, PRK12845, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 564
Score = 34.4 bits (79), Expect = 0.21
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRS 84
D+L++G G TG AL A GL +VE + G+++RS
Sbjct: 18 DLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS 57
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 34.4 bits (79), Expect = 0.22
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+DV+IIGGG G A+ A GLK A VE
Sbjct: 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVE 33
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 34.7 bits (80), Expect = 0.23
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHG 90
DVL++G G G AL A G + LV+ A G+ + I G
Sbjct: 165 DVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDG 211
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 34.3 bits (79), Expect = 0.24
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 462 RHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
R + N + T L+ D G+V GA D TG+ ++AK+VI G
Sbjct: 149 RARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCG 197
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 34.2 bits (79), Expect = 0.27
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALV 71
+DV++IG G G A++A RGL+ A+V
Sbjct: 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVV 37
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 34.1 bits (79), Expect = 0.28
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
E FDV+IIGGG G A+ A G + L++
Sbjct: 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLID 33
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 33.9 bits (78), Expect = 0.29
Identities = 18/84 (21%), Positives = 28/84 (33%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIMNL 102
DV I+G G G AL GL L+E R L +R L++ +
Sbjct: 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWD 62
Query: 103 DIEQYRMVKEALHERSIRRGDVLS 126
+E + + +L
Sbjct: 63 RLEALGVPPLHVMVVDDGGRRLLI 86
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 34.0 bits (78), Expect = 0.30
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLI 88
VL+IGGG G AL+ G K LVE + G ++ K
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTF 170
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 30.7 bits (70), Expect = 0.32
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEY 691
F+ +D + G +S ++ R L G + L +I D++ +G+++ +E+
Sbjct: 5 FRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEF 55
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 33.8 bits (78), Expect = 0.33
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 44 DVLIIGGGATGSGCALDAVTR--GLKTALVE---LDDFASGTSSRSTKLIHGGVRYLQKA 98
DV+I+GGG G AL A++R +K AL+E G +RS L +G + L+K
Sbjct: 1 DVIIVGGGLVGLSLAL-ALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEK- 58
Query: 99 IMNLDIEQYR 108
L +
Sbjct: 59 ---LGLWPKL 65
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 33.7 bits (78), Expect = 0.41
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 464 GATVANHVRVTNLIKDDKGKVRGA---HLRDELTGKEWDLKAKSVINATG 510
G V N V +T+L+ DD ++ GA +R+ K + KAK+VI ATG
Sbjct: 147 GDNVLNRVFITDLLVDD-NRIAGAVGFSVRE---NKFYVFKAKAVIVATG 192
Score = 32.6 bits (75), Expect = 0.75
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 44 DVLIIGGGATGSGCALDAVT--RGLKTALVE 72
D+LIIGGG G G A +A LK +VE
Sbjct: 13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVE 43
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 33.6 bits (77), Expect = 0.45
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRS 84
+DV+++G GA G A+ A G K +VE G ++ S
Sbjct: 8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWS 50
>gnl|CDD|132372 TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase.
This clade of sequences are members of the pfam01266
family of FAD-dependent oxidoreductases. Characterized
proteins within this family include
glycerol-3-phosphate dehydrogenase (1.1.99.5),
sarcosine oxidase beta subunit (1.5.3.1) and a number
of deaminating amino acid oxidases (1.4.-.-). These
genes have been consistently observed in a genomic
context including genes for the import and catabolism
of 2-aminoethylphosphonate (AEP). If the substrate of
this oxidoreductase is AEP itself, then it is probably
acting in the manner of a deaminating oxidase,
resulting in the same product (phosphonoacetaldehyde)
as the transaminase PhnW (TIGR02326), but releasing
ammonia instead of coupling to pyruvate:alanine.
Alternatively, it is reasonable to suppose that the
various ABC cassette transporters which are also
associated with these loci allow the import of
phosphonates closely related to AEP which may not be
substrates for PhnW.
Length = 460
Score = 33.2 bits (76), Expect = 0.54
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 13 FAAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTR--GLKTAL 70
F EQA L ++P P L + DV I+GGG TG A+ + L +
Sbjct: 2 FWLEQA--LALEQPDPA-----PPLVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLV 54
Query: 71 VELDDFASGTSSR 83
+E D +G S R
Sbjct: 55 LEADLCGAGASGR 67
>gnl|CDD|237222 PRK12837, PRK12837, 3-ketosteroid-delta-1-dehydrogenase;
Provisional.
Length = 513
Score = 32.9 bits (75), Expect = 0.59
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRS 84
EE DVL+ G G +G A A GL ALVE D GT++ S
Sbjct: 6 EEVDVLVAGSGGGVAG-AYTAAREGLSVALVEATDKFGGTTAYS 48
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model
when searched with a partial length search brings in
proteins with a dinucleotide-binding motif (Rossman
fold) over the initial 40 residues of the model,
including oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 32.9 bits (76), Expect = 0.66
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 46 LIIGGGATGSGCALDAVTRGLKTALVE 72
+IIGGGA G A+ A GL L+E
Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLLE 27
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 32.8 bits (75), Expect = 0.70
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 40 GEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
++D+ ++GGG G+ AL +G A++E
Sbjct: 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIE 33
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT
repeat-containing protein; Provisional.
Length = 897
Score = 32.9 bits (75), Expect = 0.73
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 33 QIKSLQSGEEF--DVLIIGGGATGSGCALDAVTRGLKTALVE 72
QI +L DVL+IGGG G+ AL A G L+E
Sbjct: 2 QIPALTDALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLE 43
>gnl|CDD|233582 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This model
represents the succinate dehydrogenase flavoprotein
subunit as found in Gram-negative bacteria,
mitochondria, and some Archaea. Mitochondrial forms
interact with ubiquinone and are designated EC 1.3.5.1,
but can be degraded to 1.3.99.1. Some isozymes in E.
coli and other species run primarily in the opposite
direction and are designated fumarate reductase [Energy
metabolism, Aerobic, Energy metabolism, Anaerobic,
Energy metabolism, TCA cycle].
Length = 541
Score = 31.9 bits (73), Expect = 1.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 462 RHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+ G + N +LI DD G+VRG D TG+ +AK+V+ ATG
Sbjct: 118 KLGVSFFNEYFALDLIHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATG 165
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 31.8 bits (73), Expect = 1.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVE 72
V+++G G G A A GL+T VE
Sbjct: 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVE 34
>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 31.8 bits (73), Expect = 1.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALV--ELDDFA 77
DV++IGGG G AL A G K L+ D A
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIA 36
Score = 29.4 bits (67), Expect = 6.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 472 RVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF 512
VT+LI + GKV+G D KAK+V+ ATG F
Sbjct: 117 EVTDLI-PENGKVKGVVTEDGEE-----YKAKAVVLATGTF 151
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 31.5 bits (72), Expect = 1.5
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 37 LQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76
L+ G+ VL++G G G A A G + + + D
Sbjct: 132 LKPGD--TVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDE 169
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts
PRPP to RuBP, flavoprotein [Carbohydrate transport
and metabolism].
Length = 262
Score = 31.5 bits (72), Expect = 1.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
E DV+I+G G +G A GLK A+ E
Sbjct: 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFE 60
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 31.3 bits (71), Expect = 1.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
E DV+I+G G +G A +GLK A++E
Sbjct: 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIE 47
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 31.7 bits (73), Expect = 1.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
++D+++IG G G G A+ A G + A++E
Sbjct: 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE 35
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 31.3 bits (72), Expect = 1.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
E DV I+G G +G A GLK A+ E
Sbjct: 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFE 55
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 31.6 bits (72), Expect = 1.8
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 38 QSGEEFDVLIIGGGATGSGCA--LDAVTRGLKTALVEL-DDFA----SGTSSRSTKLIHG 90
+ +DV+I+GGG TG+ L T K AL+E DFA G ++ T IH
Sbjct: 41 LGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQT--IHC 98
Query: 91 G 91
G
Sbjct: 99 G 99
>gnl|CDD|118686 pfam10158, LOH1CR12, Tumour suppressor protein. This is a region
of 130 amino acids that is the most conserved region of
hypothetical proteins involved in loss of heterozygosity
and thus tumour suppression. The exact function is not
known.
Length = 131
Score = 30.1 bits (68), Expect = 1.8
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 27/138 (19%)
Query: 562 FLPWLKHTIAGTTDLPCDVTH---HPKPTEDEIMFILQEKQLKEASDFLANEMGQMVNRA 618
FLP L+ ++G T+ + T + + LQE L + ++ +A++ +V R
Sbjct: 2 FLPVLRGLLSGQTN-RTNETLERLDSQHVI-NLCTRLQE-HLNQCAEAVASDQNALVKR- 57
Query: 619 SRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISG-EELHEILRE 677
KE I F M + +K Y S + E S E+ LR
Sbjct: 58 ---------IKEVDASIITLFAEMVERQKRYAS----------YAEQFSKVNEISAQLRR 98
Query: 678 IDSNMNGQVELDEYLQMM 695
I ++ V E L M
Sbjct: 99 IQMILDQNVPSMETLNNM 116
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 31.5 bits (72), Expect = 2.1
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGV 92
DV+++G G G AL A G + +V G ST+ GG+
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG----STRWAQGGI 62
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol [Cellular processes, Detoxification].
Length = 427
Score = 31.2 bits (71), Expect = 2.2
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 27 LPPREDQIKSLQSGEEFD-VLIIGGGATGSGCALDAVTRGLKTALVELDD 75
D IK + + V+IIGGG G A RG L+ +
Sbjct: 121 NLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 31.1 bits (71), Expect = 2.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+DV+++G G G A+ A GLKTA+VE
Sbjct: 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVE 34
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 31.2 bits (71), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+D++IIG GA A+ A G A+VE
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVE 30
>gnl|CDD|226581 COG4096, HsdR, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 875
Score = 31.3 bits (71), Expect = 2.3
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Query: 320 VREYARTAIDMVARRLRLAFLNVQAAQEALPMIIEIMAEELKWSKEEQEAAQKALPMIIE 379
E I RRL+ V + I +W QE + +
Sbjct: 680 ATESIIFQIKDYVRRLKTLLPAVATLDD----FIRKWQSAEQWEAISQELLELGRNRPRD 735
Query: 380 IMAEELKWSKEE 391
++ + ++E
Sbjct: 736 LLRKTDGELRKE 747
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 31.0 bits (71), Expect = 2.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSR 83
+ I+GGG G A RG + + E DD G ++
Sbjct: 2 IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 31.3 bits (71), Expect = 2.3
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 35 KSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
K + V +IG G AL AV +G + L+E
Sbjct: 91 KHSGNERPLHVAVIGSGGAAMAAALKAVEQGARVTLIE 128
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases
of animals, yeast, and a number of animal-resident
bacteria [Energy metabolism, Electron transport].
Length = 450
Score = 31.0 bits (70), Expect = 2.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+D L+IGGG+ G A A G K LVE
Sbjct: 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVE 32
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase,
flavoprotein subunit, Bacillus subtilis subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in the low-GC
Gram-positive bacteria and a few other lineages. This
enzyme may act in a complete or partial TCA cycle, or
act in the opposite direction as fumarate reductase. In
some but not all species, succinate dehydrogenase and
fumarate reductase may be encoded as separate isozymes
[Energy metabolism, TCA cycle].
Length = 603
Score = 31.0 bits (70), Expect = 2.4
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 442 YYDGQQDDARMCLAI--ALTATRHGATVANHVR--VTNLIKDDKGKVRGAHLRDELTGKE 497
Y Q ++ LA+ AL V + + ++I D + RG R+ +TG+
Sbjct: 121 AYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEI 180
Query: 498 WDLKAKSVINATG 510
A +VI ATG
Sbjct: 181 ETHSADAVILATG 193
>gnl|CDD|220469 pfam09917, DUF2147, Uncharacterized protein conserved in bacteria
(DUF2147). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 110
Score = 29.2 bits (66), Expect = 2.6
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 433 GDKLCGAIVYYDGQQD-DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRD 491
G KLCG IV+ G+ D + C + + +L D GK G + D
Sbjct: 19 GGKLCGTIVWLPGKPKADCKNC-----DGALKNRPLVGLQILWDLKPDGGGKWSG-KIYD 72
Query: 492 ELTGKEWDLKAK 503
GK + K
Sbjct: 73 PENGKTYSGKIT 84
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 31.3 bits (71), Expect = 2.6
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 18/83 (21%)
Query: 15 AEQASPLRAKR---PLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALV 71
A + + +R KR LP R V+++GGG G A++A + G + L+
Sbjct: 393 ATEDAEMRKKRIAGSLPAR--------------VIVVGGGLAGCSAAIEAASCGAQVILL 438
Query: 72 ELDDFASGTSSRSTKLIHG-GVR 93
E + G S+++T I+G G R
Sbjct: 439 EKEAKLGGNSAKATSGINGWGTR 461
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 30.9 bits (70), Expect = 2.9
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 455 AIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFT 513
A+A A HG + V+ I + GK G T +++A +V++ P
Sbjct: 229 ALAELAREHGGEIRTGAEVSQ-ILVEGGKGVGVR-----TSDGENIEADAVVSNADPAL 281
Score = 29.3 bits (66), Expect = 9.1
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRY 94
+DV++IG G G A GLK ++E +D G +R+ +L G R+
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG-RARTFEL--DGFRF 52
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 31.0 bits (70), Expect = 2.9
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRST 85
+++D++I+G G G A++A G+ ++E A G + +++
Sbjct: 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKAS 104
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 30.7 bits (70), Expect = 3.2
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDF------ASGTSSRS 84
VLI+GGG G ALD RG+ + LVE D A+ TS+RS
Sbjct: 9 PVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARS 55
>gnl|CDD|233702 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha
subunit. During dissimilatory sulfate reduction or
sulfur oxidation, adenylylsulfate (APS) reductase
catalyzes reversibly the two-electron reduction of APS
to sulfite and AMP. Found in several bacterial lineages
and in Archaeoglobales, APS reductase is a heterodimer
composed of an alpha subunit containing a noncovalently
bound FAD, and a beta subunit containing two [4Fe-4S]
clusters. Described by this model is the alpha subunit
of APS reductase, sharing common evolutionary origin
with fumarate reductase/succinate dehydrogenase
flavoproteins [Central intermediary metabolism, Sulfur
metabolism].
Length = 614
Score = 30.6 bits (69), Expect = 3.4
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 44 DVLIIGGGATGSGCALDAV----TRGLKTALVE 72
D+LI+GGG G G A +AV +GLK LVE
Sbjct: 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVE 33
>gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].
Length = 223
Score = 29.9 bits (68), Expect = 3.4
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 224 IDALIEAVPELKPKYRDCQTDGLLIEGAHGW-TP----TMYIRLVQDFGL 268
++ L + + +L KY D +L+EGA G P + L L
Sbjct: 93 LEKLSQGLRQLLKKY-----DLVLVEGAGGLLVPLTEEYTFADLAVQLQL 137
>gnl|CDD|234363 TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood
CpaE-like protein. Members of this protein family
belong to the MinD/ParA family of P-loop NTPases, and in
particular show homology to the CpaE family of pilus
assembly proteins (see PMID:12370432). Nearly all
members are found, not only in a gene context consistent
with pilus biogenesis or a pilus-like secretion
apparatus, but also near a DEAD/DEAH-box helicase,
suggesting an involvement in DNA transfer activity. The
model describes a clade restricted to the
Actinobacteria.
Length = 322
Score = 30.4 bits (69), Expect = 3.5
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 22/101 (21%)
Query: 45 VLIIGG-GATG-----SGCALDAVTRGLKTALVELDDFASG----TSSRSTKLIHGGVRY 94
V +IGG G G + AL A GL+T LV+ D + G + G+R+
Sbjct: 96 VAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDV----PGLRW 151
Query: 95 LQKAIMNLDIEQYRMVKEALHERSIRRGD--VLSAWSGIRP 133
L + R+ AL + RRG VLS W
Sbjct: 152 PD-----LSQARGRLPAGALRDALPRRGGLSVLS-WGRAVG 186
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 27.8 bits (63), Expect = 3.6
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 47 IIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRY 94
I+G G +G A RG ++E D G + G R+
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSER---DPGYRH 45
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 30.6 bits (69), Expect = 3.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALV 71
FDV+I+G G +G +L GL A++
Sbjct: 13 FDVVIVGAGGSGMRASLQLARAGLSVAVL 41
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 30.4 bits (69), Expect = 3.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81
FDVL++G GA G AL + L+ L+ D + S
Sbjct: 10 FDVLVVGSGAAGLYAAL-CLPSHLRVGLITKDTLKTSAS 47
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine. This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 29.8 bits (67), Expect = 4.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
E DV+I+G G +G A GLK ++E
Sbjct: 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLE 51
>gnl|CDD|182958 PRK11096, ansB, L-asparaginase II; Provisional.
Length = 347
Score = 30.1 bits (68), Expect = 4.2
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 207 TIAGG----KWTTYRAMASESIDALIEAVPELK 235
TIAGG + Y A ++ L+ AVP+LK
Sbjct: 33 TIAGGGDSATKSNYTA-GKVGVENLVNAVPQLK 64
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 30.4 bits (70), Expect = 4.3
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 6/34 (17%)
Query: 41 EEFDVLIIGGG-ATGSGC--ALDAVTRGLKTALV 71
EE+DV+++GGG A GC AL A G KT L+
Sbjct: 3 EEYDVIVVGGGHA---GCEAALAAARMGAKTLLL 33
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 30.3 bits (68), Expect = 4.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75
DV+++G G G A A RG K L+E D
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169
>gnl|CDD|220053 pfam08876, DUF1836, Domain of unknown function (DUF1836). This
family of proteins are functionally uncharacterized.
Length = 102
Score = 28.4 bits (64), Expect = 4.4
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 22/70 (31%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGY-----------------VSINDIRRGL-----KNFG 663
LTK IN Y+KR I +K Y +S++DI++ L
Sbjct: 31 ILTKTMINNYVKRGLIPPPVKKKYSKDQLALLILISDLKSVLSLDDIKKLLTLLFNNIND 90
Query: 664 ETISGEELHE 673
+ IS EEL++
Sbjct: 91 DLISPEELYD 100
>gnl|CDD|200522 cd11261, Sema_4F, The Sema domain, a protein interacting module, of
semaphorin 4F (Sema4F). Sema4F plays role in
heterotypic cell-cell contacts and controls cell
proliferation and suppresses tumorigenesis. In
neurofibromatosis type 1 (NF1) patients, reduced Sema4F
level disrupts Schwann cell/axonal interactions.
Experiments using a yeast two-hybrid system show that
the extreme C-terminus of Sema4F interacts with the PDZ
domains of post-synaptic density protein SAP90/PSD-95,
indicating possible functional involvement of Semas4F at
glutamatergic synapses. Recent work also suggests a role
for Sema4F in the injury response of intramedullary
axotomized motoneuron. Sema4F belongs to the class 4
transmembrane semaphorin family of proteins. Semaphorins
are regulator molecules involved in the development of
the nervous system and in axonal guidance. They also
play important roles in other biological processes, such
as angiogenesis, immune regulation, respiration systems
and cancer. The Sema domain is located at the N-terminus
and contains four disulfide bonds formed by eight
conserved cysteine residues. It serves as a
receptor-recognition and -binding module.
Length = 460
Score = 30.2 bits (68), Expect = 4.5
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 4 DGPLGVKPVFAAEQASPLRAK--RPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDA 61
D PL +PVF A+ L L ++ SL SG+E+DVL +G T G A
Sbjct: 359 DHPLMDRPVFPADGHPLLVTTDTAYLRVAAHRVTSL-SGKEYDVLYLG---TEDGHLHRA 414
Query: 62 VTRGLKTALVE-LDDFASGTSSRSTKLIHG 90
V G + +++E L F + +L H
Sbjct: 415 VRIGAQLSVLEDLALFPEPQPVENLQLHHN 444
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 30.2 bits (69), Expect = 4.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 40 GEEFDVLIIGGGATGSGCALDAVTRGLKTALV 71
+E+DV++IGGG G AL A G KT L+
Sbjct: 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 30.4 bits (68), Expect = 4.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80
+D+++IGGG+ G A A K ALVE D+ GT
Sbjct: 49 YDLIVIGGGSGGMAAARRAARNKAKVALVE-KDYLGGT 85
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 30.0 bits (68), Expect = 4.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 38 QSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+DV I+GGG G A GL+ AL+E
Sbjct: 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIE 48
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some
sequence reports interpreted as a stop codon). In some
members of this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 30.2 bits (68), Expect = 4.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81
++D+++IGGG+ G A +A G K L+ DF + T
Sbjct: 2 DYDLIVIGGGSGGLAAAKEAAAYGAKVMLL---DFVTPTP 38
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 29.7 bits (67), Expect = 5.9
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 43 FDVLIIGGGATGS--GCAL--DAVTRGLKTALVELDD 75
FDV+I+GGG G AL + +T+ LK L++ D
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 29.5 bits (67), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDD 75
VLI+GGG G A+ G+ LVE+D
Sbjct: 6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears
to be present in all complete eubacterial genomes so
far, as well as Saccharomyces cerevisiae. A subset of
these organisms have a closely related protein. GidA is
absent in the Archaea. It appears to act with MnmE, in
an alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34
in certain tRNAs. The shorter, related protein,
previously called gid or gidA(S), is now called TrmFO
(see model TIGR00137) [Protein synthesis, tRNA and rRNA
base modification].
Length = 617
Score = 29.6 bits (67), Expect = 6.3
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELD 74
FDV++IGGG G AL A G KT L+ L+
Sbjct: 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32
>gnl|CDD|225116 COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP
domain) [Signal transduction mechanisms].
Length = 344
Score = 29.4 bits (66), Expect = 6.3
Identities = 23/184 (12%), Positives = 49/184 (26%), Gaps = 24/184 (13%)
Query: 216 YRAMASESIDALIEAVPELKPKYRDCQ--TDGLLIEGAHGWTPTMYIRLVQDFGLECETA 273
+A E V L L ++
Sbjct: 16 AKAKIKELFIDGSLFVDRLASALALAAAYLLSLEGTLLSSELLAEEPAAAEEAFSAL--- 72
Query: 274 QHLSNSYGDRAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVREYARTAIDMVAR 333
+ + + A K + F I +I +A
Sbjct: 73 ----YAELSEEEEIRRAAAELYKVK----AALVLNFEEIGEDILIAKL------DATLAV 118
Query: 334 RLRLAFLNVQAAQEALPMIIEIMAE-ELKWSKEEQEAAQKALPMIIEIMAEELKWSKEEQ 392
R+ L+ + A+E + + +A ++K + + + E +A++L S+E+
Sbjct: 119 RIELS----KVAREIVKKALVALARGDIKAKDDYTYGHSVRVAELAEAIAKKLGLSEEKI 174
Query: 393 EIPY 396
E
Sbjct: 175 EELA 178
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This
model describes thioredoxin-disulfide reductase, a
member of the pyridine nucleotide-disulphide
oxidoreductases (pfam00070) [Energy metabolism,
Electron transport].
Length = 299
Score = 29.5 bits (67), Expect = 6.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVE 72
DV+IIG G G A+ A LK L+E
Sbjct: 1 DVIIIGAGPAGLTAAIYAARANLKPLLIE 29
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 29.1 bits (65), Expect = 7.2
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 601 KEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLK 660
+E ++ E+ MV R KIPI E I+ +++ KE K + +R GLK
Sbjct: 72 RELAEKFFEELRGMVGHIERMKIPIGHDVEHID-----VELVRKELKNAL----VRAGLK 122
Query: 661 NFGETISGEELHEILREIDSNMNGQVELDEYL 692
+L E E+ + + E L
Sbjct: 123 TLQRVPEYMDLKEDYEELKEKLEELQKEKEEL 154
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 29.5 bits (67), Expect = 7.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSR 83
V+++G G G A+D +G+ L++ DD S T SR
Sbjct: 26 VVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS-TGSR 63
>gnl|CDD|220343 pfam09687, PRESAN, Plasmodium RESA N-terminal. The short,
four-helical domain first identified in the Plasmodium
export proteins PHISTa and PHISTc has been extended to
become this six-helical PRESAN domain identified in the
P. falciparum-specific RESA-type (Ring-infected
erythrocyte surface antigen) proteins in association
with the DnaJ domain. Overall, at least 67 proteins have
been detected in P. falciparum with complete copies of
the PRESAN domain. No versions of this domain were
detected in other apicomplexan genera, suggesting that
the domain was 'invented' after the divergence of the
lineage leading to the genus Plasmodium undergoing a
dramatic proliferation only in P. falciparum. A
secondary structure-prediction derived from the multiple
alignment of the PRESAN family reveals that it is
composed of an all-helical fold with six conserved
helical segments. There is some evidence it might
localise to membranes.
Length = 129
Score = 28.0 bits (63), Expect = 7.4
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 17/54 (31%)
Query: 623 IPINLTKEEINQYIKR--------------FQIMDKERKGYVSINDIRRGLKNF 662
+ NLT+EEIN+ IK + E+K Y ++ L +
Sbjct: 2 LSKNLTEEEINKKIKSLGEVVSKKDMYIIWNYVNKNEKKKY---YNMIEKLWKY 52
>gnl|CDD|216763 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA
family. Tpt1 catalyzes the last step of tRNA splicing
in yeast. It transfers the splice junction 2'-phosphate
from ligated tRNA to NAD, to produce ADP-ribose
1"-2"-cyclic phosphate. This is presumed to be followed
by a transesterification step to release the RNA. The
first step of this reaction is similar to that catalyzed
by some bacterial toxins. E. coli KptA and mouse Tpt1
are likely to use the same reaction mechanism.
Length = 169
Score = 28.7 bits (65), Expect = 7.5
Identities = 7/33 (21%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 642 MDKERKGYVSINDIRRGLKNFGETISGEELHEI 674
+D++ G+V ++++ + L+ G ++ E+L +
Sbjct: 23 LDED--GWVDVDELLKALRKKGRWVTREDLERV 53
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 29.1 bits (66), Expect = 8.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVE 72
D++++G G G A GLK L+E
Sbjct: 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIE 33
>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and
some bacterial L-lactate dehydrogenases.
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes
the conversion of a variety of 2-oxo carboxylic acids
with medium-sized aliphatic or aromatic side chains.
This subfamily is composed of HicDHs and some bacterial
L-lactate dehydrogenases (LDH). LDHs catalyze the last
step of glycolysis in which pyruvate is converted to
L-lactate. Bacterial LDHs can be non-allosteric or may
be activated by an allosteric effector such as
fructose-1,6-bisphosphate. Members of this subfamily
with known structures such as the HicDH of
Lactobacillus confusus, the non-allosteric LDH of
Lactobacillus pentosus, and the allosteric LDH of
Bacillus stearothermophilus, show that they exist as
homotetramers. The HicDH-like subfamily is part of the
NAD(P)-binding Rossmann fold superfamily, which
includes a wide variety of protein families including
the NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 306
Score = 29.0 bits (66), Expect = 8.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
V+IIG G GS A V +G+ LV +D
Sbjct: 3 VVIIGAGHVGSSFAYSLVNQGIADELVLID 32
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 29.1 bits (66), Expect = 9.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 36 SLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ DV+I+G G G A G++ ++E
Sbjct: 4 QHPDAHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLE 40
>gnl|CDD|187861 cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 579
Score = 29.3 bits (66), Expect = 9.7
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 19/108 (17%)
Query: 623 IPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNM 682
L ++E+ + ++ + E K Y I + EE+ ++L E+ S +
Sbjct: 267 FGDKLLEKELEEILEGIKDSSNESKKYKRIEGLE------------EEILDVLSELKSYL 314
Query: 683 NGQVELDEYLQMMSAIK-SGH---VAYSRFAKMAEMEEEKHEKEILKK 726
V Y + +A K H V SRF K+ E +K + +
Sbjct: 315 L--VNFLFYKKSQAAFKILLHIEDVLPSRFKKIFE-ALKKVNSIVKED 359
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,879,221
Number of extensions: 3979531
Number of successful extensions: 4980
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4930
Number of HSP's successfully gapped: 209
Length of query: 737
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 633
Effective length of database: 6,324,786
Effective search space: 4003589538
Effective search space used: 4003589538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.7 bits)