RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8270
(737 letters)
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 311 bits (798), Expect = 3e-97
Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 2/206 (0%)
Query: 393 EIPYYWVGIKAYDFVAGSKTVKSSYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARM 452
+G+K YD++A + + Y L++K LE P++R + L G +Y + + DDAR+
Sbjct: 113 GKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPLLRKENLKGGGIYVEYRTDDARL 172
Query: 453 CLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF 512
L I A GA N+++V + I D GKV G +D LT + AK V+NA GP+
Sbjct: 173 TLEIMKEAVARGAVALNYMKVESFIYDQ-GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPW 231
Query: 513 TDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWLKHTIAG 572
D++R D + K S GVH+V+ P + + + SDGR+IF +P T G
Sbjct: 232 VDTLREKDRSKHGKYLKLSKGVHLVVDQSRFPLRQAVYFDTESDGRMIFAIPREGKTYIG 291
Query: 573 TTDLPCD-VTHHPKPTEDEIMFILQE 597
TTD D P+ T ++ +IL
Sbjct: 292 TTDTFYDKDIASPRMTVEDRDYILAA 317
Score = 222 bits (569), Expect = 3e-64
Identities = 57/273 (20%), Positives = 93/273 (34%), Gaps = 64/273 (23%)
Query: 110 VKEALHERSIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSPSNLVTIAGGKWT 169
+ DV S+W+G+RPL+ + K I+R + S S L++IAGGK T
Sbjct: 318 ANYMFPSLRLTADDVESSWAGLRPLIHEEGK--KASEISRKDEIFFSDSGLISIAGGKLT 375
Query: 170 TYRAMASESIDALIEGKFNKAGAEYPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIE 229
YR MA ++DA+ +G
Sbjct: 376 GYRKMAERTVDAVAQG-------------------------------------------- 391
Query: 230 AVPELKPKYRDCQTDGLLIEGAHGWTPTMYIRLVQD-------FGLECETAQHLSNSYGD 282
C T + + G + R + + G + + + L+ YG
Sbjct: 392 -----LNVNEPCTTAAIRLSGGLAEGAQGFPRFLDEASRKGAKLGFDADEVRRLAKLYGS 446
Query: 283 RAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLAFLN 341
V A + G + +++YGV E T +D RR F N
Sbjct: 447 NVDHVLNYAYEGKEEAEHYG-----LPALLLGQLQYGVEQEMVATPLDFFVRRTGALFFN 501
Query: 342 VQAAQEALPMIIEIMAEELKWSKEEQEAAQKAL 374
+ + ++ MAEE W++EE+ Q L
Sbjct: 502 ISLVHQWKEAVLRWMAEEFSWTEEEKTRFQNEL 534
Score = 158 bits (401), Expect = 3e-41
Identities = 45/92 (48%), Positives = 64/92 (69%), Gaps = 8/92 (8%)
Query: 28 PPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKL 87
R+ I + ++ D+L+IGGG TG+G ALDA RG++T LVE++DFASGTSSRSTKL
Sbjct: 5 KKRDKCIGEMSE-KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSSRSTKL 63
Query: 88 IHGGVRYLQKAIMNLDIEQYRMVKEALHERSI 119
+HGG+RYL++ + ++V E ER+I
Sbjct: 64 VHGGLRYLKQF-------EIKLVAEVGKERAI 88
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 298 bits (766), Expect = 2e-92
Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 8/230 (3%)
Query: 372 KALPMIIEIMAEELKWSKEEQEIPYYWVGIKAYDFVAGSKTVK-SSYYLSKKNALELFPM 430
K PM++ I + V + YD +A K +Y L+ + LE P
Sbjct: 112 KPDPMLLPIYE---DEGATTFNMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREPF 168
Query: 431 IRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLR 490
++ + L GA VY D + +DAR+ + A GA + + ++ + + ++ G R
Sbjct: 169 LKKEGLKGAGVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEG-DQIVGVKAR 227
Query: 491 DELTGKEWDLKAKSVINATGPFTDSIRRMDDGQ-VQKICVPSSGVHIVLPGYYSP-DQMG 548
D LT + ++KAK VIN +GP+ D +R ++ + V P+ G+H+V+ P Q
Sbjct: 228 DLLTDEVIEIKAKLVINTSGPWVDKVRNLNFTRPVSPKMRPTKGIHLVVDAKKLPVPQPT 287
Query: 549 LLDPSTSDGRVIFFLPWLKHTIAGTTDLPCDVTH-HPKPTEDEIMFILQE 597
D DGR++F +P T GTTD PK T++++ ++L
Sbjct: 288 YFDTGKQDGRMVFAIPRENKTYFGTTDTDYQGDFTDPKVTQEDVDYLLDV 337
Score = 227 bits (581), Expect = 8e-66
Identities = 61/291 (20%), Positives = 109/291 (37%), Gaps = 65/291 (22%)
Query: 110 VKEALHERSIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSPSNLVTIAGGKWT 169
+ E +I D+ ++W+G+RPL+ +G +I+R + P L+T++GGK T
Sbjct: 338 INHRYPEANITLADIEASWAGLRPLLIGN--SGSPSTISRGSSLEREPDGLLTLSGGKIT 395
Query: 170 TYRAMASESIDALIEGKFNKAGAEYPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIE 229
YR MA ++ + + + G
Sbjct: 396 DYRKMAEGALRLIRQLLKEEYG-------------------------------------- 417
Query: 230 AVPELKPKYRDCQTDGLLIEGAHGWTPTMYIRLVQDF-------GLECETAQHLSNSYGD 282
+ ++ + I G + + PT V + GLE E A ++++ YG
Sbjct: 418 ------IETKEIDSKKYQISGGN-FDPTKLEETVTELAKEGVAAGLEEEDATYIADFYGT 470
Query: 283 RAFAVAKLAQLTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLAFLN 341
A + +LA+ + P G A +RYG+ E D + RR
Sbjct: 471 NARRIFELAK---EMAPYPGL-----SLAESARLRYGLEEEMVLAPGDYLIRRTNHLLFE 522
Query: 342 VQAAQEALPMIIEIMAEELKWSKEEQEAAQKALPMIIEIMAEELKWSKEEQ 392
E +I+ +AE W++EE+ K L +I +L+ K E+
Sbjct: 523 RDQLDEIKQPVIDAIAEYFGWTEEEKAQQTKRLEALIAES--DLRELKGEK 571
Score = 157 bits (400), Expect = 4e-41
Identities = 44/92 (47%), Positives = 61/92 (66%), Gaps = 8/92 (8%)
Query: 28 PPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKL 87
R+D I+ +Q EE D+LIIGGG TG+G A+ A G+KT L+E+ DFA GTSSRSTKL
Sbjct: 19 KTRQDSIQKMQQ-EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGTSSRSTKL 77
Query: 88 IHGGVRYLQKAIMNLDIEQYRMVKEALHERSI 119
+HGG+RYL+ +V + + ER++
Sbjct: 78 VHGGIRYLKTF-------DVEVVADTVGERAV 102
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 265 bits (680), Expect = 9e-81
Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 12/212 (5%)
Query: 389 KEEQEIPYYWVGIKAYDFVAGSKTVKSSYYLSKKNALELFPMIRGDKLCGAIVYYDGQQD 448
+ +G+ YD + ++ S L L P I+ Y D D
Sbjct: 93 PHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKR-----GFEYSDCWVD 147
Query: 449 DARMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINA 508
DAR+ LA A R G V R T+ ++ + D TGK++ +A+ ++NA
Sbjct: 148 DARLVLANAQMVVRKGGEVLTRTRATSARRE--NGLWIVEAEDIDTGKKYSWQARGLVNA 205
Query: 509 TGPFTDSIRRMDDGQ-VQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWL- 566
TGP+ G HIV+P ++ Q +L D R++F +PW+
Sbjct: 206 TGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQ--NEDKRIVFVIPWMD 263
Query: 567 KHTIAGTTDLPCD-VTHHPKPTEDEIMFILQE 597
+ +I GTTD+ K E EI ++L
Sbjct: 264 EFSIIGTTDVEYKGDPKAVKIEESEINYLLNV 295
Score = 203 bits (520), Expect = 5e-58
Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 58/253 (22%)
Query: 116 ERSIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVHVSPSNLVTIAGGKWTTYRAMA 175
++ + R D++ +SG+RPL D + Q+I R++ + + N
Sbjct: 301 KKQLSRDDIVWTYSGVRPLCDDE--SDSPQAITRDYTLDIHDEN---------------- 342
Query: 176 SESIDALIEGKFNKAGAEYPNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAVPELK 235
KA L+++ GGK TTYR +A +++ L +
Sbjct: 343 ------------GKAP-------------LLSVFGGKLTTYRKLAEHALEKLTPYYQGIG 377
Query: 236 PKYRDCQTDGLLIEGA--HGWTPTMYIRLVQDFG-LECETAQHLSNSYGDRAFAVAKLAQ 292
P T ++ G G RL + + L A+H + +YG + + A
Sbjct: 378 P----AWTKESVLPGGAIEGDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNA- 432
Query: 293 LTGKRWPIIGKKIHPEFPYIDAEIRYGVR-EYARTAIDMVARRLRLA-FLNVQAAQEALP 350
+G+ + +AE++Y V E+ R A D + RR + +LN
Sbjct: 433 ---GTVSDLGEDFGH--EFYEAELKYLVDHEWVRRADDALWRRTKQGMWLNADQQSRVSQ 487
Query: 351 MIIEIMAEELKWS 363
++E + L +
Sbjct: 488 WLVEYTQQRLSLA 500
Score = 153 bits (389), Expect = 5e-40
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIM 100
E D+++IGGG G+G A DA RGL ++E D A TSS S+KLIHGG+RYL+
Sbjct: 2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHY-- 59
Query: 101 NLDIEQYRMVKEALHERSI 119
++R+V EAL ER +
Sbjct: 60 -----EFRLVSEALAEREV 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 94.1 bits (233), Expect = 6e-20
Identities = 115/722 (15%), Positives = 216/722 (29%), Gaps = 231/722 (31%)
Query: 31 EDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHG 90
+D KS+ S EE D +I+ DAV+ L+ L L+
Sbjct: 39 QDMPKSILSKEEIDHIIMSK---------DAVSGTLR--LFWT-------------LLSK 74
Query: 91 GVRYLQKAIMNLDIEQYRMVKEALHERSIRRGDVLSAWSGIR-PLVSDPNKAGDTQSIA- 148
+QK + + Y+ + + + + + R L +D Q A
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN------QVFAK 128
Query: 149 ------------RNHIVHVSPSNLVTIAG----GKWTTYRAMASESI-DALIEGKFN--- 188
R ++ + P+ V I G GK +A + ++ K +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VALDVCLSYKVQCKMDFKI 184
Query: 189 ---KAGAEY-PNLLLGIIFNLVTIAGGKWTTYRAMASESIDALIEAV-PELK-----PKY 238
P +L ++ L+ WT+ R+ S +I I ++ EL+ Y
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 239 RDCQTDGLLIEGAHGWTPTMYIRLVQDFGLECETAQHLSNSYGDRAFAVA-KLAQLTGKR 297
+C LL+ + + F L C+ L + R V L+ T
Sbjct: 244 ENC----LLVL-LNVQNA----KAWNAFNLSCKI---LLTT---RFKQVTDFLSAATTTH 288
Query: 298 WPIIGKKIHPEFPYIDAEIRYGVREYARTAIDMVARRLRLAFLNVQAAQEALPMIIEIMA 357
+ H E + L L +L+ + + LP
Sbjct: 289 ISLD----HHSMTLTPDE----------------VKSLLLKYLDCRP--QDLP------- 319
Query: 358 EELKWSKEEQEAAQKALPMIIEIMAEELKWSKEEQEIPYYWVGIKAYDFVAGSKTVKSSY 417
P + I+AE ++ + W K + + ++SS
Sbjct: 320 ----------REVLTTNPRRLSIIAESIR------DGLATWDNWKHVNCDKLTTIIESSL 363
Query: 418 -----YLSKKN--ALELFP---MIRGDKLCGAIVYYDGQQDDARMCLAIALTATRHGATV 467
+K L +FP I L ++++D + D + V
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLS--LIWFDVIKSDVMV--------------V 407
Query: 468 ANHVRVTNLI-KDDKGKVRGAH-LRDELTGKEWDLKA--KSVINATGPFTDSIRRMDDGQ 523
N + +L+ K K + EL K + A +S+++
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---------------- 451
Query: 524 VQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWLKHTIAGTTDLPCDVTHH 583
H +P + D + P D + HH
Sbjct: 452 -----------HYNIPKTFDSDDLI---PPYLDQYFYSHIG-----------------HH 480
Query: 584 PK---PTEDEIMF--------ILQEKQLKEASDFLANEMGQMVNRASRDKIPINLTKEEI 632
K E +F L++K ++ N G ++N T +++
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQK-IR-HDSTAWNASGSILN-----------TLQQL 527
Query: 633 NQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYL 692
Y K + I D + K +N I L E + + ++LR + + + +
Sbjct: 528 KFY-KPY-ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Query: 693 QM 694
Q+
Sbjct: 586 QV 587
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 77.6 bits (191), Expect = 4e-17
Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 596 QEKQLKEASDFLANEMGQMVNRASRDKIP------INLTKEEINQYIKRFQIMDKERKGY 649
++ Q +A L + + + ++ + ++ + ++ D G
Sbjct: 5 RDLQGGKAFGLLKAQQEERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGD 64
Query: 650 VSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFA 709
+ I ++R L+ G + EL ++RE+ S ++L+MM +S
Sbjct: 65 IDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGKRSA------IL 118
Query: 710 KMAEMEEEKHEKEILKKQISVERSGGGL 737
+M M EEK+++ +++ L
Sbjct: 119 RMILMYEEKNKEHKRPTGPPAKKAISEL 146
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 77.3 bits (191), Expect = 7e-17
Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 585 KPTEDEIMFILQEKQLKEAS---DFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQI 641
PT + I+ + +++ ++ ++ K E ++K FQ+
Sbjct: 36 NPTNQLVQDIINADSSLRDASSLTL--DQITGLIEVNEKELDATTKAKTE--DFVKAFQV 91
Query: 642 MDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
DKE G VS+ D+R L GE ++ E+ E+L+ ++ + NG+++ ++++ +
Sbjct: 92 FDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVL 146
Score = 52.6 bits (127), Expect = 2e-08
Identities = 11/96 (11%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 631 EINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILR-EIDSNMNGQVELD 689
F + DK+ +G ++ + + L+ G + + + +I+ + + LD
Sbjct: 2 ATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
Query: 690 EYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+ ++ K + + ++ +K
Sbjct: 62 QITGLI----------EVNEKELDATTKAKTEDFVK 87
Score = 32.2 bits (74), Expect = 0.22
Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 27/111 (24%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSIND------IRRGLKNFGETISGEELHEILREID 679
N T + + I ++++ + + E+ + + D
Sbjct: 36 NPTNQLVQDIIN--ADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFD 93
Query: 680 SNMNGQV----------ELDEYL------QMMSAI---KSGHVAYSRFAKM 711
G+V L E L +++ + +G + Y +F +
Sbjct: 94 KESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIED 144
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 76.8 bits (189), Expect = 1e-16
Identities = 20/145 (13%), Positives = 55/145 (37%), Gaps = 13/145 (8%)
Query: 596 QEKQLKEASDFLANEMGQMVNRASRDKIPIN------LTKEEINQYIKRFQIMDKERKGY 649
Q +A L + + +R+ + E++ + +++ D +G
Sbjct: 7 NRFQGGKAFGILKARQERRLAEINREFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGE 66
Query: 650 VSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFA 709
+ + ++R ++ G + E+ +++ E+ ++ + +++ MM +S
Sbjct: 67 IDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSA------VL 120
Query: 710 KMAEM-EEEKHEKEILKKQISVERS 733
K+ M E + +E ER
Sbjct: 121 KLVMMFEGKANESSPKPVGPPPERD 145
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 72.2 bits (178), Expect = 7e-16
Identities = 15/70 (21%), Positives = 39/70 (55%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
L++EEI + F+++D + G ++ ++++ GLK G + E+ +++ D + +G
Sbjct: 16 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGT 75
Query: 686 VELDEYLQMM 695
++ E++
Sbjct: 76 IDYGEFIAAT 85
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 74.9 bits (185), Expect = 9e-16
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVE 687
++EEI + F++ DK+ GY+S ++R + N GE ++ EE+ E++RE D + +GQV
Sbjct: 82 SEEEI---REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 138
Query: 688 LDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+E++QMM+ AK ++ I
Sbjct: 139 YEEFVQMMT------------AKGGGGGAAARKEVIRN 164
Score = 67.6 bits (166), Expect = 3e-13
Identities = 23/100 (23%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
LT+E+I ++ + F + DK+ G ++ ++ +++ G+ + EL +++ E+D++ NG
Sbjct: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 63
Query: 686 VELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
++ E+L MM+ KM + + E+ +E +
Sbjct: 64 IDFPEFLTMMA------------RKMKDTDSEEEIREAFR 91
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 79.2 bits (195), Expect = 1e-15
Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 20/143 (13%)
Query: 586 PTEDEIMFILQE---KQLKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIM 642
T E+ F + + DF E G ++ LT+E+I ++ + F +
Sbjct: 264 KTRAEVKFEGDTLVNRIELKGIDF--KEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLF 321
Query: 643 DKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAIKSGH 702
DK+ G ++ ++ +++ G+ + EL +++ E+D++ NG ++ E+L MM+
Sbjct: 322 DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK---- 377
Query: 703 VAYSRFAKMAEMEEEKHEKEILK 725
M++ E+EI +
Sbjct: 378 -----------MKDTDSEEEIRE 389
Score = 72.6 bits (178), Expect = 1e-13
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 585 KPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRF 639
PTE E+ ++ E + +FL M+ R +D +EEI + F
Sbjct: 344 NPTEAELQDMINEVDADGNGTIDFPEFL-----TMMARKMKDTDS----EEEI---REAF 391
Query: 640 QIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697
++ DK+ GY+S ++R + N GE ++ EE+ E++RE D + +GQV +E++QMM+A
Sbjct: 392 RVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 449
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 71.9 bits (177), Expect = 1e-15
Identities = 21/92 (22%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
++ + + + F++ DK++ GY+S +++R + N GE ++ EE+ ++++E D + +GQ
Sbjct: 2 HMDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQ 61
Query: 686 VELDEYLQMMSAIKSGHVAYSRFAKMAEMEEE 717
V +E+++MM ++ G
Sbjct: 62 VNYEEFVKMMMTVRGG--------GGGNGWSR 85
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 74.2 bits (183), Expect = 1e-15
Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 585 KPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRF 639
PT++E+ I++E + +FL + QM A ++EE+ F
Sbjct: 52 NPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGK------SEEEL---ANCF 102
Query: 640 QIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAIK 699
+I DK G++ I ++ L+ GE ++ E++ +++++ D N +G+++ DE+L+MM ++
Sbjct: 103 RIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ 162
Score = 71.5 bits (176), Expect = 1e-14
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
L++E I ++ F + D + G +S ++ ++ G+ + EEL I+ E+D + +G +
Sbjct: 14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTI 73
Query: 687 ELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+ +E+L MM +M E + K E+E+
Sbjct: 74 DFEEFLVMMV------------RQMKEDAKGKSEEELAN 100
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 73.4 bits (181), Expect = 2e-15
Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 585 KPTEDEIMFILQE--KQLKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIM 642
+ T+ I ++ E DF + + R +++ ++E+ + F++
Sbjct: 46 QQTKSTIRQLIDEFDPFGNGDIDF--DSFKIIGARFLGEEVNPEQMQQEL---REAFRLY 100
Query: 643 DKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697
DKE GY+S + +R L ET+S E+L ++ EID++ +G V+ +E++ +M+
Sbjct: 101 DKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVMTG 155
Score = 62.6 bits (153), Expect = 1e-11
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 626 NLTKEEINQYIKRFQIMDKERK-GYVSINDIRRGLKNFGETISGEELHEILREIDSNMNG 684
L+ ++ F+ + G VS + I L+ G + + +++ E D NG
Sbjct: 6 KLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNG 65
Query: 685 QVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEE 717
++ D + + + V +M++E
Sbjct: 66 DIDFDSFKIIGARFLGEEV------NPEQMQQE 92
Score = 29.8 bits (68), Expect = 1.7
Identities = 26/110 (23%), Positives = 34/110 (30%), Gaps = 27/110 (24%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSIND-----IRRGLKNFGETISGEELHEILREIDS 680
TK I Q I D G + + R + +EL E R D
Sbjct: 46 QQTKSTIRQLIDE---FDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDK 102
Query: 681 NMNGQV----------ELDEYL------QMMSAI---KSGHVAYSRFAKM 711
NG + ELDE L M+ I SG V + F +
Sbjct: 103 EGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGV 152
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 71.6 bits (176), Expect = 2e-15
Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 610 EMGQMVNRASRDKIPIN------LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFG 663
+ + ++ ++ + ++ + +++ D G + I ++R L+ G
Sbjct: 3 QQEERLDEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLG 62
Query: 664 ETISGEELHEILREIDSNMNGQVELDEYLQMMSAIKSG 701
+ EL +++ E+ S ++L+MM +S
Sbjct: 63 VPKTHLELKKLIGEVSSGSGETFSYPDFLRMMLGKRSA 100
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 72.6 bits (179), Expect = 2e-15
Identities = 22/113 (19%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 585 KPTEDEIMFILQEKQLKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDK 644
PT E+ I + KE D + + + +E+ + F+ +DK
Sbjct: 37 NPTNAELNTIKGQLNAKE-FDL--ATFKTVYRKPIKTPTE---QSKEM---LDAFRALDK 87
Query: 645 ERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697
E G + ++R+ L N G+ ++ E+ E+++E+ + +G + + ++ M+
Sbjct: 88 EGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLVT 140
Score = 49.4 bits (119), Expect = 3e-07
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELD 689
+Q + FQI DK+ G VSI ++ L++ G+ + EL+ I ++++ L
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFD---LA 58
Query: 690 EYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+ + + E+ KE+L
Sbjct: 59 TFKTVYR------------KPIKTPTEQ--SKEMLD 80
Score = 28.3 bits (64), Expect = 5.4
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 25/106 (23%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDI-RRGLKNFGETISGEELHEILREIDSNMNG 684
N T E+N + ++ + + + R+ +K T +E+ + R +D NG
Sbjct: 37 NPTNAELNTIKGQ---LNAKEFDLATFKTVYRKPIKT--PTEQSKEMLDAFRALDKEGNG 91
Query: 685 QV----------ELDEYL------QMMSAI---KSGHVAYSRFAKM 711
+ L + L ++M + G + Y F M
Sbjct: 92 TIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDM 137
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 70.7 bits (174), Expect = 3e-15
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
L++E I ++ F + D + G +S ++ ++ G+ + EEL I+ E+D + +G +
Sbjct: 14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTI 73
Query: 687 ELDEYLQMMS 696
+ +E+L MM
Sbjct: 74 DFEEFLVMMV 83
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 72.5 bits (178), Expect = 8e-15
Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 604 SDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFG 663
+ N ++ +K + + + +D ++ GYVS+ + + L+ G
Sbjct: 79 EEAAVNATDSLLKMKGEEKAMAVIQSLIM------YDCIDTDKDGYVSLPEFKAFLQAVG 132
Query: 664 ETISGEELHEILREIDSNMNGQVELDEYLQMMSAIKSG 701
++ ++ +D N NGQ+ DE+L ++ G
Sbjct: 133 PDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFLFG 170
Score = 50.5 bits (121), Expect = 2e-07
Identities = 10/109 (9%), Positives = 33/109 (30%), Gaps = 21/109 (19%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETIS---------GEELHEILR 676
+ + + R Q +D G++S D + +E +
Sbjct: 7 SERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVAD 66
Query: 677 EIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
++ ++ ++E + + +M+ E+ +++
Sbjct: 67 QLGLAPGVRISVEEAAVNAT------------DSLLKMKGEEKAMAVIQ 103
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 67.9 bits (167), Expect = 1e-14
Identities = 16/68 (23%), Positives = 41/68 (60%)
Query: 629 KEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVEL 688
+ + F+ D++ G+++++++RR + G+ + EEL ++RE D + +G+V
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 689 DEYLQMMS 696
+E+ +M++
Sbjct: 62 EEFARMLA 69
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 70.7 bits (174), Expect = 2e-14
Identities = 27/120 (22%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 585 KPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRF 639
PT +E+ ++ E + +FL + M + + ++EE+ F
Sbjct: 51 NPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGK------SEEEL---SDLF 101
Query: 640 QIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAIK 699
++ DK GY+ + +++ L+ GETI+ +++ E++++ D N +G+++ DE+L+ M ++
Sbjct: 102 RMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE 161
Score = 68.7 bits (169), Expect = 9e-14
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 622 KIPINLTKEEINQYIKRFQIMDKERK-GYVSINDIRRGLKNFGETISGEELHEILREIDS 680
LT+E+ N++ F I + G +S ++ + ++ G+ + EEL E++ E+D
Sbjct: 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDE 66
Query: 681 NMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+ +G V+ DE+L MM M + + K E+E+
Sbjct: 67 DGSGTVDFDEFLVMMV------------RSMKDDSKGKSEEELSD 99
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 70.2 bits (173), Expect = 2e-14
Identities = 20/70 (28%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVE 687
++EE+ I+ F++ D++ G +S ++R + N GE ++ +E+ E++RE D + +G +
Sbjct: 81 SEEEL---IEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHIN 137
Query: 688 LDEYLQMMSA 697
+E+++MM +
Sbjct: 138 YEEFVRMMVS 147
Score = 67.1 bits (165), Expect = 2e-13
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
LT+E+I ++ + F + DK+ G ++ ++ +++ G+ + EL +++ E+D++ NG
Sbjct: 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 62
Query: 686 VELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
++ E+L +M+ KM E + E+ E K
Sbjct: 63 IDFPEFLSLMA------------RKMKEQDSEEELIEAFK 90
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 70.3 bits (173), Expect = 2e-14
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
+L EEI + + F+ DK++ GY++ D+ ++ G + EL E+ ++I+ N+ G
Sbjct: 4 SLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGH 63
Query: 686 VELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKK 726
V+ D+++++M K+ + + L+
Sbjct: 64 VDFDDFVELMG------------PKLLAETADMIGVKELRD 92
Score = 66.0 bits (162), Expect = 7e-13
Identities = 26/115 (22%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 585 KPTEDEIMFILQE--KQLKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIM 642
PTE E++ + Q+ L DF ++ +++ + + +E+ F+
Sbjct: 43 MPTEMELIELSQQINMNLGGHVDF--DDFVELMGPKLLAETADMIGVKEL---RDAFREF 97
Query: 643 DKERKGYVSINDIRRGLKNF-GETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
D G +S +++R ++ G + ++ EI+R++D N +G+V+ +E+++MMS
Sbjct: 98 DTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS 152
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 70.3 bits (173), Expect = 3e-14
Identities = 19/109 (17%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 616 NRASRDKIPI--NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHE 673
NR+S P+ L +E+ + + F + D G++ ++++ +K G + E+ +
Sbjct: 4 NRSSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILD 63
Query: 674 ILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKE 722
++ E DS ++ D++ +M K+ + + K
Sbjct: 64 LIDEYDSEGRHLMKYDDFYIVMG------------EKILKRDPLDEIKR 100
Score = 69.9 bits (172), Expect = 3e-14
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 585 KPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRF 639
+ + EI+ ++ E + + DF MG+ + RD +EI + F
Sbjct: 55 ELPKREILDLIDEYDSEGRHLMKYDDFYI-VMGEKIL--KRD------PLDEI---KRAF 102
Query: 640 QIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
Q+ D + G +SI ++RR K GET++ EEL ++ E D + +G++ +E++ + +
Sbjct: 103 QLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAICT 159
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 69.4 bits (171), Expect = 3e-14
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 17/117 (14%)
Query: 585 KPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRF 639
+P ++EI ++ E + DFL M Q ++ +D TKEEI +K F
Sbjct: 38 EPKKEEIKKMISEIDKEGTGKMNFGDFLT-VMTQKMSE--KD------TKEEI---LKAF 85
Query: 640 QIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
++ D + G +S +++R K GE ++ EEL E++ E D + +G+V E+L++M
Sbjct: 86 KLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMK 142
Score = 66.0 bits (162), Expect = 5e-13
Identities = 17/95 (17%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVE 687
T+E+ + + F + D + G + + +++ ++ G EE+ +++ EID G++
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMN 60
Query: 688 LDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKE 722
++L +M+ KM+E + ++ +
Sbjct: 61 FGDFLTVMT------------QKMSEKDTKEEILK 83
Score = 27.8 bits (63), Expect = 7.1
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 29/109 (26%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSIND----IRRGLKNFGETISGEELHEILREIDSN 681
KEEI + I +DKE G ++ D + + + E + EE+ + + D +
Sbjct: 38 EPKKEEIKKMISE---IDKEGTGKMNFGDFLTVMTQKMS---EKDTKEEILKAFKLFDDD 91
Query: 682 MNGQV----------ELDEYL------QMMSAI---KSGHVAYSRFAKM 711
G++ EL E L +M+ G V+ F ++
Sbjct: 92 ETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRI 140
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 69.2 bits (170), Expect = 4e-14
Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 585 KPTEDEIMFILQEKQLK-EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMD 643
P+ + I + +L + ++ DK EE+ IK F D
Sbjct: 47 APSSIDEKKIKELYGDNLTYEQYL-----EYLSICVHDKDN----VEEL---IKMFAHFD 94
Query: 644 KERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
GY++ + ++ L +G+ ++ +E + L S ++ + + +
Sbjct: 95 NNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSS--EDNIDYKLFCEDI 144
Score = 50.3 bits (121), Expect = 1e-07
Identities = 14/99 (14%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
+E++++ R +K G +SI++ + G S + +I +
Sbjct: 9 QLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DNL 64
Query: 687 ELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
++YL+ +S + ++ + +E++K
Sbjct: 65 TYEQYLEYLSIC---------------VHDKDNVEELIK 88
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 68.1 bits (167), Expect = 4e-14
Identities = 15/76 (19%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 625 INLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNF---GETISGEELHEILREIDSN 681
L+K +Q F+ +D ++ GY+ ++++ L+ F ++ E ++ D++
Sbjct: 33 SGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADND 92
Query: 682 MNGQVELDEYLQMMSA 697
+G++ DE+ +M+ +
Sbjct: 93 GDGKIGADEFQEMVHS 108
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 66.4 bits (163), Expect = 4e-14
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
F+ DK + G +S+++ R F + E++ + EID + NG++ DE+ +
Sbjct: 7 FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIE 64
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 69.2 bits (170), Expect = 5e-14
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 585 KPTEDEIMFILQEKQLKEA-------SDFLANEMGQMVNRASRDKIPINLTKEEINQYIK 637
PT E++ +L + E FL + + + T E+ ++
Sbjct: 42 NPTNAEVLKVLGNPKSDELKSRRVDFETFL-PMLQAVAKNRGQG------TYEDY---LE 91
Query: 638 RFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697
F++ DKE G V ++R L GE ++ EE+ +L + NG + + +L+ + +
Sbjct: 92 GFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYEAFLKHILS 150
Query: 698 I 698
+
Sbjct: 151 V 151
Score = 56.4 bits (137), Expect = 1e-09
Identities = 13/101 (12%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREI--DSNMNG 684
K+++ ++ + F++ D+ G + + ++ G+ + E+ ++L D +
Sbjct: 4 FNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSR 63
Query: 685 QVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+V+ + +L M+ +A+ + ++ L+
Sbjct: 64 RVDFETFLPML-------------QAVAKNRGQGTYEDYLE 91
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 67.3 bits (165), Expect = 5e-14
Identities = 27/70 (38%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVE 687
++EEI + F++ DK+ GY+S ++R + N GE ++ EE+ E++RE D + +GQV
Sbjct: 27 SEEEI---REAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 83
Query: 688 LDEYLQMMSA 697
+E++QMM+A
Sbjct: 84 YEEFVQMMTA 93
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 67.5 bits (165), Expect = 5e-14
Identities = 10/75 (13%), Positives = 29/75 (38%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
+ + F+ D + +S + R + ++ E+ + E+ N G+
Sbjct: 17 KAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGR 76
Query: 686 VELDEYLQMMSAIKS 700
++ ++L S+ +
Sbjct: 77 LKYPDFLSRFSSETA 91
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 68.7 bits (169), Expect = 5e-14
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 586 PTEDEIMFILQEKQLKEAS---DFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIM 642
PT EI + D + Q++NR + +P EE +K FQ+
Sbjct: 38 PTLAEI-----TEIESTLPAEVDM--EQFLQVLNRPNGFDMP--GDPEEF---VKGFQVF 85
Query: 643 DKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSA 697
DK+ G + + ++R L + GE +S EE+ E+L+ + +G V +++QM+ A
Sbjct: 86 DKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMILA 139
Score = 47.1 bits (113), Expect = 2e-06
Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELD 689
+ + Y + F + D+ G + I L+ G+ + E + EI+S + +V+++
Sbjct: 2 TDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDME 57
Query: 690 EYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
++LQ++ + + +E +K
Sbjct: 58 QFLQVL-------------NRPNGFDMPGDPEEFVK 80
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 69.5 bits (171), Expect = 6e-14
Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 17/114 (14%)
Query: 609 NEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISG 668
N+ +M R I +L++EEI + F ++D ++ G ++ +++ GLK G +
Sbjct: 7 NKFKKMALR----VIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKE 62
Query: 669 EELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKE 722
E+ ++++ D + +G ++ E++ + ++E E H
Sbjct: 63 SEILDLMQAADVDNSGTIDYKEFIAAT-------------LHLNKIEREDHLFA 103
Score = 59.1 bits (144), Expect = 2e-10
Identities = 20/116 (17%), Positives = 56/116 (48%), Gaps = 20/116 (17%)
Query: 585 KPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRF 639
E EI+ ++Q + + +F+A ++ + ++ + F
Sbjct: 59 NLKESEILDLMQAADVDNSGTIDYKEFIA--A--TLHLNKIE------REDHL---FAAF 105
Query: 640 QIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
DK+ GY++ +++++ + FG + + E++R++D + +G+++ +E++ MM
Sbjct: 106 TYFDKDGSGYITPDELQQACEEFG--VEDVRIEELMRDVDQDNDGRIDYNEFVAMM 159
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 66.4 bits (163), Expect = 7e-14
Identities = 12/71 (16%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGET-ISGEELHEILREIDSNMNGQ 685
+ +++ + ++ F++ D G + ++ + ++ GE ++ E+ E ++E D + NG
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGV 61
Query: 686 VELDEYLQMMS 696
+++ E++ ++
Sbjct: 62 IDIPEFMDLIK 72
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 69.1 bits (170), Expect = 8e-14
Identities = 24/69 (34%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVE 687
++EEI +K F++ D + G ++I D+RR K GE ++ EEL E++ E D N + +++
Sbjct: 99 SREEI---LKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEID 155
Query: 688 LDEYLQMMS 696
DE++++M
Sbjct: 156 EDEFIRIMK 164
Score = 68.4 bits (168), Expect = 1e-13
Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 616 NRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEIL 675
R + K + LT+E+ + + F + D + G + +++ ++ G EE+ +++
Sbjct: 11 ARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70
Query: 676 REIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKE 722
EID + +G ++ +E+L MM+ AKM E + + +
Sbjct: 71 SEIDKDGSGTIDFEEFLTMMT------------AKMGERDSREEILK 105
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 67.9 bits (167), Expect = 1e-13
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 586 PTEDEIMFILQEKQLKEA-------SDFLANEMGQMVNRASRDKIPINLTKEEINQYIKR 638
PT EI IL +E +FL M+ A+ +K T E+ ++
Sbjct: 41 PTNAEINKILGNPSKEEMNAAAITFEEFL-----PMLQAAANNKDQG--TFEDF---VEG 90
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698
++ DKE G V ++R L GE ++ EE+ E+++ + + NG + + +++ + ++
Sbjct: 91 LRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYEAFVKHIMSV 149
Score = 54.5 bits (132), Expect = 6e-09
Identities = 11/101 (10%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDS--NMNG 684
+K + + + F + D+ ++ + + + G+ + E+++IL
Sbjct: 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAA 61
Query: 685 QVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+ +E+L M+ A +++ ++ ++
Sbjct: 62 AITFEEFLPMLQ------------AAANN-KDQGTFEDFVE 89
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 67.5 bits (166), Expect = 1e-13
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 23/117 (19%)
Query: 585 KPTEDEIMFILQEKQLKEAS------DFLANEMGQMVNRASRDKIPINLTKEEINQYIKR 638
PT++ + E + EA FL G+ +N D ++ I
Sbjct: 39 NPTDEYL-----EGMMSEAPGPINFTMFL-TMFGEKLN--GTD------PEDVI---RNA 81
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
F D+E G++ + +R L G+ + EE+ E+ RE + G E+ +++
Sbjct: 82 FACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 138
Score = 55.6 bits (135), Expect = 2e-09
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 16/99 (16%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
+ +I ++ + F ++D+ R G++ D+ L + G+ + E L ++ E G +
Sbjct: 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP----GPI 56
Query: 687 ELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+L M K+ + E +
Sbjct: 57 NFTMFLTMFG------------EKLNGTDPEDVIRNAFA 83
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 68.0 bits (167), Expect = 2e-13
Identities = 24/118 (20%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 586 PTEDEIMFILQEKQLKEA----SDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQI 641
PTE ++ K++ E + L +M ++ + +E ++ F+
Sbjct: 44 PTEAQVHQHGGTKKMGEKAYKLEEIL-PIYEEMSSKDTGT------AADEF---MEAFKT 93
Query: 642 MDKERKGYVSINDIRRGLKNFGETISGEELHEILREID--SNMNGQVELDEYLQMMSA 697
D+E +G +S +IR LK GE I+ ++ ++I D +++G ++ ++ ++ + A
Sbjct: 94 FDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 151
Score = 53.0 bits (128), Expect = 2e-08
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 627 LTKEEINQYIKRFQIMD--KERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNG 684
LTK+EI + + F + D R G V + L+ G + ++H+
Sbjct: 3 LTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEK 61
Query: 685 QVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+L+E L + +M+ + E ++
Sbjct: 62 AYKLEEILPIY-------------EEMSSKDTGTAADEFME 89
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 68.4 bits (168), Expect = 2e-13
Identities = 17/97 (17%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
L++EEI + F+++D + G ++ ++++ GLK G + E+ +++ D + +G
Sbjct: 3 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGT 62
Query: 686 VELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKE 722
++ E++ + ++E E++
Sbjct: 63 IDYGEFIAAT-------------VHLNKLEREENLVS 86
Score = 59.9 bits (146), Expect = 2e-10
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 32/124 (25%)
Query: 585 KPTEDEIMFILQEKQLKEASD-----------FLANEMGQMVNRASRDKIPINLTKEEIN 633
+ E EI K L +A+D F+A V+ + +E +
Sbjct: 42 ELMESEI------KDLMDAADIDKSGTIDYGEFIA----ATVHLNKLE------REENL- 84
Query: 634 QYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQ 693
+ F DK+ GY+++++I++ K+FG + + ++++EID + +GQ++ E+
Sbjct: 85 --VSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQDNDGQIDYGEFAA 140
Query: 694 MMSA 697
MM
Sbjct: 141 MMRK 144
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 68.6 bits (168), Expect = 2e-13
Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 10/120 (8%)
Query: 585 KPTEDEIMFILQEKQLKEASDFLANE-------MGQMVNRASRDKIPINLTKEEINQYIK 637
P + + + E + + A+ + + + +
Sbjct: 57 TPEQTKRHQVCVEA-FFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWG 115
Query: 638 R--FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
F I DK+ G +++++ + K G + S E+ R D + G +++DE +
Sbjct: 116 DAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQH 175
Score = 57.1 bits (138), Expect = 2e-09
Identities = 12/117 (10%), Positives = 35/117 (29%), Gaps = 10/117 (8%)
Query: 614 MVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRG-----LKNFGETISG 668
M ++ + I ++ F +D G +++++I T
Sbjct: 1 MSSKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQ 60
Query: 669 EELHEILREIDSNMNG-----QVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHE 720
+ H++ E G ++ ++L + + + + + E
Sbjct: 61 TKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDA 117
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 68.8 bits (169), Expect = 2e-13
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
+L EIN F +D + G +S +I GLK G ++H++LR+IDSN +GQ
Sbjct: 50 HLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQ 109
Query: 686 VELDEYLQMM 695
+ ++L
Sbjct: 110 IHYTDFLAAT 119
Score = 58.8 bits (143), Expect = 5e-10
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRR--GLKNFGETISGEELHEILREIDSNMNG 684
L KE + F+ D + G +S+ +++R G + + + + +L+E+D N +G
Sbjct: 126 LKKEVC---LIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDG 182
Query: 685 QVELDEYLQMMS 696
+++ E++ MMS
Sbjct: 183 EIDFHEFMLMMS 194
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 66.2 bits (162), Expect = 2e-13
Identities = 16/75 (21%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 625 INLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNF---GETISGEELHEILREIDSN 681
+ L K+ + K F I+DK++ G++ +++ LK F +S +E ++ D +
Sbjct: 33 VGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKD 92
Query: 682 MNGQVELDEYLQMMS 696
+G++ ++E+ +++
Sbjct: 93 GDGKIGVEEFSTLVA 107
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 65.0 bits (159), Expect = 2e-13
Identities = 16/70 (22%), Positives = 40/70 (57%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
LT EE +Y + FQ+ DK+ ++ ++ ++ G + +++ EI+++ D + +G+
Sbjct: 8 LTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKF 67
Query: 687 ELDEYLQMMS 696
+ + +L +M
Sbjct: 68 DQETFLTIML 77
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 64.4 bits (158), Expect = 3e-13
Identities = 15/70 (21%), Positives = 38/70 (54%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
L++E+ + + F + D + G + ++++ ++ G + E+ E++ E D NG +
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYI 60
Query: 687 ELDEYLQMMS 696
D++L +M+
Sbjct: 61 GFDDFLDIMT 70
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 65.0 bits (159), Expect = 4e-13
Identities = 14/74 (18%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNF---GETISGEELHEILREIDSNMN 683
++K+ +Q + F+I+D ++ G++ ++++ L+ F ++ E L D + +
Sbjct: 35 MSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGD 94
Query: 684 GQVELDEYLQMMSA 697
G++ +E+ +M+ +
Sbjct: 95 GKIGAEEFQEMVQS 108
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 66.8 bits (164), Expect = 4e-13
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 583 HPKPTEDEIMFILQEKQLKEAS------DFLANEMGQMVNRASRDKIPINLTKEEINQYI 636
+E+ + +KEAS FL G+ + D ++ I +
Sbjct: 56 RLNVKNEEL-----DAMIKEASGPINFTVFL-TMFGEKLK--GAD------PEDVI---M 98
Query: 637 KRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
F+++D + KG + + + L G + EE+ + ++ G V+ +++
Sbjct: 99 GAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVIT 158
Score = 52.6 bits (127), Expect = 4e-08
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 617 RASRDKIPI--NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEI 674
RA+ + + EI + + F ++D+ G + +D+R G E
Sbjct: 7 RAAEGSSNVFSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKN---EE 63
Query: 675 LREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
L + +G + +L M K+ + E K
Sbjct: 64 LDAMIKEASGPINFTVFLTMFG------------EKLKGADPEDVIMGAFK 102
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 67.5 bits (165), Expect = 5e-13
Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 585 KPTEDEIMFILQE-------KQLKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIK 637
P + + E + +D+ + + + D++ E I
Sbjct: 53 TPEQAKRHKDAVEAFFGGAGMKYGVETDW--PAYIEGWKKLATDELEKYAKNEPTLIRIW 110
Query: 638 R---FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQM 694
F I+DK++ G +++++ + K G S E+ E R D + +GQ+++DE +
Sbjct: 111 GDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQ 170
Query: 695 M 695
Sbjct: 171 H 171
Score = 54.8 bits (132), Expect = 9e-09
Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 10/113 (8%)
Query: 618 ASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDI-----RRGLKNFGETISGEELH 672
A+ I ++ F +D G +S++++ + N G T + H
Sbjct: 1 ANSKLTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRH 60
Query: 673 EILREIDSNMNG-----QVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHE 720
+ E G + + Y++ + + + + +
Sbjct: 61 KDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDA 113
Score = 28.6 bits (64), Expect = 6.1
Identities = 14/128 (10%), Positives = 31/128 (24%), Gaps = 28/128 (21%)
Query: 596 QEKQLKEASDFL---------ANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKER 646
+ K +FL +EM + + + + + ++
Sbjct: 14 WIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVE---AFFGG 70
Query: 647 KGYVSINDI----------------RRGLKNFGETISGEELHEILREIDSNMNGQVELDE 690
G + T+ + +D + NG + LDE
Sbjct: 71 AGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDE 130
Query: 691 YLQMMSAI 698
+ A
Sbjct: 131 WKAYTKAA 138
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 65.9 bits (162), Expect = 5e-13
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
NLT+E+I ++ + F + DK+ G +S +++ +++ G + S E+ +++ EID + N
Sbjct: 4 NLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHA 63
Query: 686 VELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+E E+L +MS ++ + E+ E K
Sbjct: 64 IEFSEFLALMS------------RQLKCNDSEQELLEAFK 91
Score = 65.2 bits (160), Expect = 1e-12
Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 20/118 (16%)
Query: 585 KPTEDEIMFILQE------KQLKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKR 638
P+E E+ ++ E + E S+FLA M + + D +++E+ ++
Sbjct: 43 SPSEAEVADLMNEIDVDGNHAI-EFSEFLA-LMSRQLK--CND------SEQEL---LEA 89
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
F++ DK G +S +++ L + GE ++ E+ E+LRE+ +G++ + ++ ++S
Sbjct: 90 FKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVSDG-SGEINIKQFAALLS 146
Score = 27.8 bits (63), Expect = 7.2
Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 28/108 (25%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSIND----IRRGLKNFGETISGEELHEILREIDSN 681
+ ++ E+ + +D + + ++ + R LK S +EL E + D N
Sbjct: 43 SPSEAEVADLMNE---IDVDGNHAIEFSEFLALMSRQLK---CNDSEQELLEAFKVFDKN 96
Query: 682 MNGQV----------ELDEYL------QMMSAI--KSGHVAYSRFAKM 711
+G + + E L +M+ + SG + +FA +
Sbjct: 97 GDGLISAAELKHVLTSIGEKLTDAEVDEMLREVSDGSGEINIKQFAAL 144
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 63.8 bits (156), Expect = 6e-13
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
T ++I + F+ D G +S +++ LK G ++ +E+ ++ EID++ +G
Sbjct: 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDGDGF 62
Query: 686 VELDEYLQMMSA 697
+ DE+ A
Sbjct: 63 ISFDEFTDFARA 74
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 66.9 bits (164), Expect = 7e-13
Identities = 14/69 (20%), Positives = 31/69 (44%)
Query: 632 INQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEY 691
I + F+ D G + N++R L + G +S + ++R+ D G + D+Y
Sbjct: 92 ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDY 151
Query: 692 LQMMSAIKS 700
+++ +
Sbjct: 152 VELSIFVCR 160
Score = 61.2 bits (149), Expect = 6e-11
Identities = 16/85 (18%), Positives = 37/85 (43%)
Query: 624 PINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMN 683
P + + ++ F+ +D + G +S+ ++ L + G S ++L D N +
Sbjct: 18 PSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHS 77
Query: 684 GQVELDEYLQMMSAIKSGHVAYSRF 708
G++ DE+ + I S + +
Sbjct: 78 GEITFDEFKDLHHFILSMREGFRKR 102
Score = 30.7 bits (70), Expect = 1.2
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
++++ +++F D++R+G + +D I + + D GQ
Sbjct: 125 QVSEQTFQALMRKF---DRQRRGSLGFDDYVELS------IFVCRVRNVFAFYDRERTGQ 175
Query: 686 VELD--EYLQMMSAI 698
V ++ +I
Sbjct: 176 VTFTFDTFIGGSVSI 190
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 65.6 bits (161), Expect = 8e-13
Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 585 KPTEDEIMFILQEKQLKEA----SDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQ 640
P +++ + ++ E +FL + + + T + ++ F+
Sbjct: 43 NPRNEDVFAVGGTHKMGEKSLPFEEFL--PAYEGLMDCEQG------TFADY---MEAFK 91
Query: 641 IMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNM--NGQVELDEYLQMMSA 697
D+E +G++S ++R L GE +S E++ EI++ D G V+ +++++ + A
Sbjct: 92 TFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMA 150
Score = 52.2 bits (126), Expect = 4e-08
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 17/101 (16%)
Query: 627 LTKEEINQYIKRFQIMD--KERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNG 684
L+++EI+ F++ D R G V + + G E++ +
Sbjct: 3 LSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVG-GTHKMGEK 61
Query: 685 QVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+ +E+L + E+ + ++
Sbjct: 62 SLPFEEFLPAYEGLMD--------------CEQGTFADYME 88
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 64.8 bits (159), Expect = 1e-12
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 18/116 (15%)
Query: 585 KPTEDEIMFILQEKQLK-----EASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRF 639
+ + E + +FL + MG+ + +++ + + F
Sbjct: 38 RVEPAAFNEMFNEADATGNGKIQFPEFL-SMMGRRMK--QTT------SEDIL---RQAF 85
Query: 640 QIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
+ D E GY+ ++ L N G+ + E E L ++ GQ+ D ++ M
Sbjct: 86 RTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYDNFINTM 140
Score = 61.3 bits (150), Expect = 2e-11
Identities = 20/96 (20%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELD 689
++++++ + F++ D ER G+++ ++ LK FG + +E+ E D+ NG+++
Sbjct: 3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFP 62
Query: 690 EYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
E+L MM +M + E ++ +
Sbjct: 63 EFLSMMG------------RRMKQTTSEDILRQAFR 86
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 64.8 bits (159), Expect = 2e-12
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 24/118 (20%)
Query: 585 KPTEDEIMFILQEKQLKEAS------DFLANEMGQMVNRASRDKIPINLTKEEINQYIKR 638
P +DE+ LKE FL G+ V+ D ++ +
Sbjct: 48 VPPDDEL-----NAMLKECPGQLNFTAFL-TLFGEKVS--GTD------PEDAL---RNA 90
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
F + D++ +G++ + ++ L+N G+ S EE+ + ++ N Q ++ + +
Sbjct: 91 FSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIKG 147
Score = 59.1 bits (144), Expect = 2e-10
Identities = 17/108 (15%), Positives = 45/108 (41%), Gaps = 19/108 (17%)
Query: 618 ASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILRE 677
A + L++ ++ + + F ++D++R G++ + D++ + G +EL+ +L+E
Sbjct: 1 AEEAPRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKE 60
Query: 678 IDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
GQ+ +L + K++ + E +
Sbjct: 61 CP----GQLNFTAFLTLFG------------EKVSGTDP---EDALRN 89
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 66.3 bits (162), Expect = 2e-12
Identities = 16/88 (18%), Positives = 42/88 (47%)
Query: 623 IPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNM 682
+ + ++ + + F +D++R G + IN++ G G +S + ++R D++
Sbjct: 41 LLNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDF 100
Query: 683 NGQVELDEYLQMMSAIKSGHVAYSRFAK 710
NG + E++ M ++ + + A+
Sbjct: 101 NGHISFYEFMAMYKFMELAYNLFVMNAR 128
Score = 53.2 bits (128), Expect = 5e-08
Identities = 9/71 (12%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELD 689
+ + F + + R G + ++I L+ G I+ + +L + + +L+
Sbjct: 114 KFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYIN-QRTSLLLHRLFARGMAFCDLN 172
Query: 690 EYLQMMSAIKS 700
++ + +
Sbjct: 173 CWIAICAFAAQ 183
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 65.0 bits (159), Expect = 2e-12
Identities = 15/69 (21%), Positives = 35/69 (50%)
Query: 632 INQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEY 691
I + F+ D++ G + N++++ L FG +S + ++R+ D GQ+ D++
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 132
Query: 692 LQMMSAIKS 700
+Q ++
Sbjct: 133 IQGCIVLQR 141
Score = 54.2 bits (131), Expect = 1e-08
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGET-ISGEELHEILREIDSNMNGQVEL 688
+ + FQ +DK+R G +S ++++ L N T + + I+ D V
Sbjct: 4 PDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 63
Query: 689 DEYLQMMSAIKSGHVAYSRF 708
E+ + I + +
Sbjct: 64 SEFTGVWKYITDWQNVFRTY 83
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 64.1 bits (157), Expect = 3e-12
Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 24/117 (20%)
Query: 585 KPTEDEIMFILQEKQLKEAS------DFLANEMGQMVNRASRDKIPINLTKEEINQYIKR 638
P + E+ LKEA FL + ++ D ++E I
Sbjct: 50 APDDKEL-----TAMLKEAPGPLNFTMFL-SIFSDKLS--GTD------SEETI---RNA 92
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
F + D++ ++I I+ L+N G+ + +E+ +E G+ + ++ M+
Sbjct: 93 FAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMI 148
Score = 57.9 bits (141), Expect = 5e-10
Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 616 NRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEIL 675
++A+ + L +++I + + F ++D +R G+VS DI+ + G +EL +L
Sbjct: 2 DKAASGVLT-KLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAML 60
Query: 676 REIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+E G + +L + S K++ + E+ +
Sbjct: 61 KEAP----GPLNFTMFLSIFS------------DKLSGTDSEETIRNAFA 94
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 64.2 bits (157), Expect = 6e-12
Identities = 14/70 (20%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
++ + F ++D++ KGY++ +++GL+ G + +L +IDS+ +G+
Sbjct: 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLP-YNFDLLLDQIDSDGSGK 103
Query: 686 VELDEYLQMM 695
++ E++
Sbjct: 104 IDYTEFIAAA 113
Score = 56.9 bits (138), Expect = 2e-09
Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISG-----EELHEILREIDSN 681
L+K+ I F++ D + G ++ ++ L N + + + ++R++D N
Sbjct: 119 LSKKLI---YCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKN 175
Query: 682 MNGQVELDEYLQMM 695
+G+++ E+ +MM
Sbjct: 176 NDGKIDFHEFSEMM 189
Score = 29.9 bits (68), Expect = 2.1
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 30/111 (27%)
Query: 636 IKRFQIMDKERKGYVSINDIRRGLKNFGETISGEE---LHEILREIDSNMNGQV---EL- 688
K + ++ K +K + + + + L +D + G + +L
Sbjct: 25 FKNYGLLLKFQK---------LAMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLK 75
Query: 689 -----------DEYLQMMSAI---KSGHVAYSRFAKMAEMEEEKHEKEILK 725
+ ++ I SG + Y+ F A ++ +K I
Sbjct: 76 KGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEFIAAALDRKQLSKKLIYC 126
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 62.4 bits (152), Expect = 7e-12
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFG-ETISGEELHEILREIDSNMNGQV 686
E+ K F ++ + ++ +RR G E +S E+ ++RE D + +G +
Sbjct: 38 FVSEL---CKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGAL 94
Query: 687 ELDEYLQMMS 696
E+ +M
Sbjct: 95 NQTEFCVLMV 104
Score = 36.5 bits (85), Expect = 0.006
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 15/57 (26%)
Query: 669 EELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+L E S + + ++ L +M +M+ E+ E+ K
Sbjct: 3 PTEKSMLLETTSTTKMETKYEDMLPVM---------------AEKMDVEEFVSELCK 44
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 66.4 bits (162), Expect = 7e-12
Identities = 12/74 (16%), Positives = 33/74 (44%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
L++E+ N + F G S D+++ L + +TI L ++ ++++ G+
Sbjct: 115 MLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGR 174
Query: 686 VELDEYLQMMSAIK 699
+ + + + +
Sbjct: 175 MSYITLVAVANDLA 188
Score = 62.9 bits (153), Expect = 9e-11
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELD 689
++ + F+ +D G +S + R G + R D + + V
Sbjct: 185 NDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KKSVQDALFRYADEDESDDVGFS 243
Query: 690 EYLQMMSAIKSGHVAYSRF 708
EY+ + + + Y+
Sbjct: 244 EYVHLGLCLLVLRILYAFA 262
Score = 58.3 bits (141), Expect = 3e-09
Identities = 6/58 (10%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFG-ETISGEELHEILREIDSNMNGQVELDEYLQMM 695
+ D ++ G +S ++++ L++ + ++ +D + + + E++ ++
Sbjct: 259 YAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVMLV 316
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 61.5 bits (150), Expect = 8e-12
Identities = 16/74 (21%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNF---GETISGEELHEILREIDSNMN 683
LT + + K F ++D+++ G++ ++++ L+ F ++ E L+ DS+ +
Sbjct: 36 LTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGD 95
Query: 684 GQVELDEYLQMMSA 697
G + +DE+ ++ A
Sbjct: 96 GAIGVDEWAALVKA 109
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 59.3 bits (144), Expect = 3e-11
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 617 RASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILR 676
R + + EE+ + F D R G + + R + + + +
Sbjct: 11 RENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQ 68
Query: 677 EIDSNMNGQVELDEYLQMM 695
+D++ +G + E+ +
Sbjct: 69 RLDADRDGAITFQEFARGF 87
Score = 26.9 bits (60), Expect = 6.3
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 656 RRGLKNFGETISGEE---LHEILREIDSNMNGQVELDEYLQMMSAI 698
R L G GEE L + D+N +G++E +E+ + + +
Sbjct: 11 RENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTEL 56
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 59.6 bits (145), Expect = 4e-11
Identities = 17/74 (22%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFG---ETISGEELHEILREIDSNMN 683
L+ + +Q K F I+D+++ G++ +++ LKNF ++ E L D++ +
Sbjct: 36 LSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGD 95
Query: 684 GQVELDEYLQMMSA 697
G++ ++E+ ++ A
Sbjct: 96 GKIGVEEFQSLVKA 109
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 58.3 bits (142), Expect = 4e-11
Identities = 13/61 (21%), Positives = 32/61 (52%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698
F+ +D G VS +++ + + + L I + ID++ NG+++ +E+ + +I
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
Query: 699 K 699
+
Sbjct: 66 Q 66
Score = 26.8 bits (60), Expect = 5.5
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 671 LHEILREIDSNMNGQVELDEYLQMMSAIKSG 701
+ +EID N +G V +E +S ++
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAI 32
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 59.5 bits (145), Expect = 4e-11
Identities = 18/114 (15%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 585 KPTEDEIMFILQEKQLKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDK 644
D+I L + + + + + +V + ++ K F+ +D
Sbjct: 6 LLKADDIKKALDAVKAEGSFNH--KKFFALVGLKAMSA-------NDV---KKVFKAIDA 53
Query: 645 ERKGYVSINDIRRGLKNF---GETISGEELHEILREIDSNMNGQVELDEYLQMM 695
+ G++ +++ LK+F G ++ E L+ D + +G++ +DE+ ++
Sbjct: 54 DASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLV 107
Score = 27.9 bits (63), Expect = 4.6
Identities = 2/35 (5%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 662 FGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
+ + +++ + L + + G ++ ++
Sbjct: 3 AKDLLKADDIKKALDAVKA--EGSFNHKKFFALVG 35
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 60.8 bits (148), Expect = 6e-11
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 625 INLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNG 684
+++ I + F +D G +S +I L + G I +++ IL+ +D N G
Sbjct: 31 LSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQALDINDRG 88
Query: 685 QVELDEYLQMM 695
+ E++
Sbjct: 89 NITYTEFMAGC 99
Score = 49.6 bits (119), Expect = 5e-07
Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 27/128 (21%)
Query: 587 TEDEIMFILQEKQLKEASDFLANEMGQMVNRASRDK-----------IPINLTKEEINQY 635
+ EI +L +K+ ++ +++ + E
Sbjct: 57 SHREIYTVLASVGIKKW------DINRILQALDINDRGNITYTEFMAGCYRWKNIESTFL 110
Query: 636 IKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNG--------QVE 687
F +DK+ GY+S +DI + + + ++ + S G ++
Sbjct: 111 KAAFNKIDKDEDGYISKSDIVSLVHDKV--LDNNDIDNFFLSVHSIKKGIPREHIINKIS 168
Query: 688 LDEYLQMM 695
E+ M
Sbjct: 169 FQEFKDYM 176
Score = 31.1 bits (71), Expect = 0.75
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 22/108 (20%)
Query: 636 IKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYL--- 692
+K + R + IN + L I + ++E+ ++D+N NG + E
Sbjct: 10 MKSYMKHSNIRN--IIINIMAHELSVINNHI--KYINELFYKLDTNHNGSLSHREIYTVL 65
Query: 693 -----------QMMSAI---KSGHVAYSRFAKMAEMEEEKHEKEILKK 726
+++ A+ G++ Y+ F + E LK
Sbjct: 66 ASVGIKKWDINRILQALDINDRGNITYTEFMAGC-YRWKNIESTFLKA 112
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 58.0 bits (141), Expect = 7e-11
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698
F+ D G +S++++ L+ G T S +E+ ++ EID++ +G ++ +E++ +
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGST-SADEVQRMMAEIDTDGDGFIDFNEFISFCN-- 65
Query: 699 KSGHVAYSRFAKMAEMEE 716
A M++
Sbjct: 66 ----------ANPGLMKD 73
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 61.2 bits (149), Expect = 8e-11
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 24/117 (20%)
Query: 586 PTEDEIMFILQEKQLKEAS------DFLANEMGQMVNRASRDKIPINLTKEEINQYIKRF 639
TE E+ + + EA FL G + D ++ I + F
Sbjct: 90 CTEQEL-----DSMVAEAPGPINFTMFL-TIFGDRIA--GTD------EEDVI---VNAF 132
Query: 640 QIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
+ D E G ++R L +GE S +E+ + L E + NG +++ ++ Q+++
Sbjct: 133 NLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQILT 188
Score = 54.6 bits (132), Expect = 1e-08
Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
Query: 617 RASRDK--IPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEI 674
RA R + T+ ++ ++ + FQ++D+++ G++S NDIR + G + +EL +
Sbjct: 39 RAQRSGSNVFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSM 98
Query: 675 LREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+ E G + +L + ++A +E E I+
Sbjct: 99 VAEAP----GPINFTMFLTIFG------------DRIAGTDE---EDVIVN 130
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 61.2 bits (149), Expect = 9e-11
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELD 689
I + F+ +D++ + ++ R+GL G + E + R+ D N +G ++L+
Sbjct: 34 SGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLE 93
Query: 690 EYLQMM 695
E+L+ +
Sbjct: 94 EFLRAL 99
Score = 53.5 bits (129), Expect = 3e-08
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNF-------GETISGEELHEILREIDSNMN-GQVELDE 690
F +D+ G V+++D+R GE E L L DS+ GQV L E
Sbjct: 115 FAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAE 174
Query: 691 YLQMMSAI 698
+ S +
Sbjct: 175 FQDYYSGV 182
Score = 29.2 bits (66), Expect = 4.1
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 23/95 (24%)
Query: 652 INDIRRGLKNFG-ETISGEELHEILREIDSNMNGQVELDE----------------YLQM 694
+ +R + G I + L R++D + + ++ DE +
Sbjct: 21 MEKLRAQCLSRGASGI--QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGV 78
Query: 695 MSAI---KSGHVAYSRF-AKMAEMEEEKHEKEILK 725
SG + F + + E I
Sbjct: 79 CRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAA 113
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 61.0 bits (148), Expect = 9e-11
Identities = 7/104 (6%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISG---------EELHEILR 676
+L + +++ KRF D + G + ++++ + ++ + +
Sbjct: 29 DLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFL 88
Query: 677 EIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHE 720
+ +++++ R + + + +
Sbjct: 89 HKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNS 132
Score = 56.0 bits (135), Expect = 5e-09
Identities = 12/91 (13%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 605 DFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGE 664
D++ R++ ++ + ++D + G V +++++ +K F
Sbjct: 102 DWVEANRVFAEAERERERRGEPSLIALLSNSY--YDVLDDDGDGTVDVDELKTMMKAFD- 158
Query: 665 TISGEELHEILREIDSNMNGQVELDEYLQMM 695
+ E + + D++ +G++E E + +
Sbjct: 159 -VPQEAAYTFFEKADTDKSGKLERTELVHLF 188
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 61.8 bits (150), Expect = 1e-10
Identities = 23/154 (14%), Positives = 57/154 (37%), Gaps = 24/154 (15%)
Query: 585 KPTEDEIMFILQEKQLKEASDF----------LANEMGQMVNRASRDKIPINLTKEEINQ 634
+ + + K + LA+ + N + + EE
Sbjct: 48 ARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEF-- 105
Query: 635 YIKRFQIMDKERKGYVSINDIRRGLKNFGETISG--------EELHEILREIDSNMNGQV 686
+K ++ D + G++ +++ LK+ E + E +L+ DSN +G++
Sbjct: 106 -MKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKL 164
Query: 687 ELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHE 720
EL E +++ ++ +F + +E ++
Sbjct: 165 ELTEMARLLPVQENF---LLKFQGIKMCGKEFNK 195
Score = 55.6 bits (134), Expect = 1e-08
Identities = 11/105 (10%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISG------EELHEILREIDS 680
+ +Q+ + + D + GY+ +++ ++ + E+ + +
Sbjct: 10 SSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQ 69
Query: 681 NMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
+G++ + E ++ ++ F + ++ K +E +K
Sbjct: 70 RDDGKIGIVELAHVLPTEEN-------FLLLFRCQQLKSCEEFMK 107
Score = 53.3 bits (128), Expect = 7e-08
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 609 NEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISG 668
EM +++ + K ++ K F++ D++ GY+ N++ LK+ E
Sbjct: 167 TEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQ 226
Query: 669 EELHEILREI-----DSNMNGQVELDEYLQMMSA 697
E + + G++ + ++SA
Sbjct: 227 ELDINNISTYKKNIMALSDGGKLYRTDLALILSA 260
Score = 31.0 bits (70), Expect = 1.2
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 610 EMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRR--------GLKN 661
++ + N+ D E + +K F D G + + ++ R LK
Sbjct: 131 DLLEKANKTVDDT----KLAEYTDLMLKLF---DSNNDGKLELTEMARLLPVQENFLLKF 183
Query: 662 FGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698
G + G+E ++ D + NG ++ +E ++ +
Sbjct: 184 QGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDL 220
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 58.7 bits (143), Expect = 1e-10
Identities = 13/79 (16%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698
F+ +D G VS +++ + + + L I + ID++ NG+++ +E+ + +I
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
Query: 699 KSGHVAYSRFAKMAEMEEE 717
+ +++ +
Sbjct: 66 QG--------QDLSDDKIG 76
Score = 55.2 bits (134), Expect = 3e-09
Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 31/122 (25%)
Query: 585 KPTEDEIMFILQEKQLKEASD-----------FLANEMGQMVNRASRDKIPINLTKEEIN 633
E + + + ++ D F S DK +
Sbjct: 32 IKNEQLL------QLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDK-------IGL- 77
Query: 634 QYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQ 693
+++MD + G ++ ++ K G E++ E + + D+N +G + L+E+L+
Sbjct: 78 --KVLYKLMDVDGDGKLTKEEVTSFFKKHGI----EKVAEQVMKADANGDGYITLEEFLE 131
Query: 694 MM 695
Sbjct: 132 FS 133
Score = 29.0 bits (66), Expect = 2.9
Identities = 10/104 (9%), Positives = 31/104 (29%), Gaps = 21/104 (20%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSIND---IRRGLKNFGETISGEELHEILREIDSNM 682
++ + K +D + G + N+ ++ + L + + +D +
Sbjct: 32 IKNEQLLQLIFKS---IDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDG 88
Query: 683 NGQVELDEYLQMMSAI---------------KSGHVAYSRFAKM 711
+G++ +E G++ F +
Sbjct: 89 DGKLTKEEVTSFFKKHGIEKVAEQVMKADANGDGYITLEEFLEF 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 2e-10
Identities = 103/672 (15%), Positives = 181/672 (26%), Gaps = 278/672 (41%)
Query: 78 SGTSSRSTKLIHGGVRY--------------LQK---AIMNLDIEQYRMVKEALHERSIR 120
S+R L HG + + LQ+ I+ E + A +
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF-----AADDEPTT 56
Query: 121 RGDVLSAWSG-IRPLVSDPNKAGDTQSIARNHI------------VHVSPSNLVTIAGGK 167
+++ + G + LV +P+K G + + +H + L+
Sbjct: 57 PAELVGKFLGYVSSLV-EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 168 WTT--------YRAMA---------SESIDALIEGKFNKAGAEYPNLLLGIIFNLVTIAG 210
A S S AL F G L+ IF G
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNS--AL----FRAVGEGNAQLVA--IF------G 161
Query: 211 GK-------------WTTYRAMASESIDALIEAVPELKPKYRDCQ---TDGLLIEGAHGW 254
G+ + TY + + I E + EL D + T GL I W
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI---LEW 218
Query: 255 TPTMYIRLVQDFGLECETAQHLSNSYGDRAFAVAKLAQLTGKRWPIIG--KKIHPEFPYI 312
LE + Y ++ P+IG + H Y+
Sbjct: 219 -------------LENPSNTP-DKDYLLSI-PIS---------CPLIGVIQLAH----YV 250
Query: 313 DAEIRYG-----VREYARTAIDMVARRLRLAFLNVQAAQEALPMIIEIMAEELKWSKEEQ 367
G +R Y + A + A +AE W +
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQ--------GLVTAV--------AIAETDSW-ESFF 293
Query: 368 EAAQKALPMIIEIMAEELKWSKEEQEIPYYWVGIKAY--------------DFVAGSKTV 413
+ +KA+ ++ +++G++ Y D + ++ V
Sbjct: 294 VSVRKAI----TVL---------------FFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 414 KSSYYLSKKNALELFPM--IRG---DKLCGAIVYYDGQQDDARMCLAIALTATRHGATVA 468
S PM I +++ + + + + I+L V+
Sbjct: 335 PS-------------PMLSISNLTQEQVQDYVNKTNSHLPAGKQ-VEISLVNGAKNLVVS 380
Query: 469 NHVR-----VTNL-------------IKDDKGKVRGA----------H----------LR 490
+ L I + K++ + H +
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 491 DELTGKEWDLKAKS----VIN-ATGPFTDSIRRMDDGQVQKIC-------------VPSS 532
+L AK V + G +D +R + ++I
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDG--SD-LRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 533 GVHIVL--PGYYSPDQMGLLDPSTSDG---RVIFFLPWLKHTIAGTTDLPCDVTHHPKPT 587
HI+ PG S +G+L DG RVI +AGT D
Sbjct: 498 ATHILDFGPGGAS--GLGVLTHRNKDGTGVRVI---------VAGTLD---------INP 537
Query: 588 EDEIMFILQEKQ 599
+D+ F KQ
Sbjct: 538 DDDYGF----KQ 545
Score = 47.0 bits (111), Expect = 3e-05
Identities = 67/336 (19%), Positives = 102/336 (30%), Gaps = 130/336 (38%)
Query: 106 QYR-MVKEALHERS--IRRGDVLSAWSGIRPLVSDPNKAGDTQ-------SIARNHIVHV 155
Q + M + L++ S + DV W N+A D SI IV
Sbjct: 1627 QEQGMGMD-LYKTSKAAQ--DV---W----------NRA-DNHFKDTYGFSIL--DIVIN 1667
Query: 156 SPSNLVTIAGGKW-----TTYRAMASESI-DALIEGKFNKAGAEYPNLLLGIIF------ 203
+P NL GG+ Y AM E+I D + K K E F
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL--KTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 204 -NLVTIAGGKWTTY--RAMASESIDALIEAVPELKPKYRDCQTDGLLIEGA----H--GW 254
+ T + A+ A E LK K GL+ A H G
Sbjct: 1726 LSA--------TQFTQPALTLMEK-AAFED---LKSK-------GLIPADATFAGHSLG- 1765
Query: 255 TPTMYIRLVQDFGLECE-TAQHLSNSYGDRAFAVAKLAQLTGKRWPIIGKKIHPEFPYID 313
E A L+ S D ++ L ++ R G + P
Sbjct: 1766 ----------------EYAA--LA-SLAD-VMSIESLVEVVFYR----GMTMQVAVP--- 1798
Query: 314 AEIRYGVREYARTAIDMVARRLRLAFLNVQAAQEALPMIIEIMAEELKWSKEEQEAA--- 370
E R+ M+A + + +QEAL ++E + + + E
Sbjct: 1799 ------RDELGRSNYGMIA--INPGRVAASFSQEALQYVVERVGKR---TGWLVEIVNYN 1847
Query: 371 ----Q-------KALPMIIEIMAEELKWSKEEQEIP 395
Q +AL + + L + K Q+I
Sbjct: 1848 VENQQYVAAGDLRAL----DTVTNVLNFIK-LQKID 1878
Score = 45.4 bits (107), Expect = 7e-05
Identities = 66/415 (15%), Positives = 121/415 (29%), Gaps = 154/415 (37%)
Query: 302 GKKIH-------PEFPYIDAEIRYGVREY--ARTAIDM-VARRLRLAFLNVQAAQEALPM 351
G IH E + + ++ Y AR ++ A A
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA--- 154
Query: 352 IIEIMA------------EELKWSKEEQEAAQKALPMIIEIMAEELK--WSKEEQEIPYY 397
+++A EEL+ + + + +I+ AE L +
Sbjct: 155 --QLVAIFGGQGNTDDYFEELR---DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 398 WVGIKAYDFVAGSKTVKSSYYLSKKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIA 457
G+ +++ YL + P+I G + + +Y
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLL--SIPISCPLI-G--VI-QLAHY-------------V 250
Query: 458 LTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGP----FT 513
+TA G T + ++GA TG L I A F
Sbjct: 251 VTAKLLGFTPGEL----------RSYLKGA------TGHSQGLVTAVAI-AETDSWESFF 293
Query: 514 DSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWLKHTIAGT 573
S+R+ + +L FF+ +
Sbjct: 294 VSVRKA---------------------------ITVL----------FFIGVRCYEAYPN 316
Query: 574 TDLPCDVTHHPKPTEDEIMFILQEKQLKEASDFLANEMGQ---MVNRASRDKIPINLTKE 630
T LP P+ IL+ D L N G M+ + + LT+E
Sbjct: 317 TSLP--------PS------ILE--------DSLENNEGVPSPML--SISN-----LTQE 347
Query: 631 EINQYIKRF-QIMDKERKGYVS-INDIRRGLKNFGETISG--EELHEI---LREI 678
++ Y+ + + ++ +S +N G KN +SG + L+ + LR+
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVN----GAKNL--VVSGPPQSLYGLNLTLRKA 396
Score = 37.0 bits (85), Expect = 0.028
Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 58/188 (30%)
Query: 83 RSTKLIHGGVR-------YLQKAIMNLDIEQYRMVKE----------ALHERSIRRG--- 122
ST + + Q A+ ++ + +K A H S+ G
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH--SL--GEYA 1768
Query: 123 ------DVLSAWSGIRPLVSDPNKAGDTQSIA--RNHIVHVSPSNLVTIAGGKWTTYRAM 174
DV+S S + +V G T +A R+ + SN IA +
Sbjct: 1769 ALASLADVMSIESLVE-VVF---YRGMTMQVAVPRD---ELGRSNYGMIAINPGRVAASF 1821
Query: 175 ASESIDALIEGKFNKAGAEYPNLLLGII-FNL----VTIAGGKWTTYRAMASESIDALIE 229
+ E++ ++E + G L+ I+ +N+ AG RA +D +
Sbjct: 1822 SQEALQYVVERVGKRTG-----WLVEIVNYNVENQQYVAAG----DLRA-----LDTVTN 1867
Query: 230 AVPELKPK 237
+ +K +
Sbjct: 1868 VLNFIKLQ 1875
Score = 32.3 bits (73), Expect = 0.77
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 29/102 (28%)
Query: 7 LGVKPVFAAEQASPLRAKRP-LPPR-EDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTR 64
+ + PV+ S LR + R D I L + T+
Sbjct: 455 IQI-PVYDTFDGSDLRVLSGSISERIVDCIIRLP------------------VKWETTTQ 495
Query: 65 GLKTALVELDDFASGTSSRSTKLIH----G-GVRYLQKAIMN 101
T ++ DF G +S L H G GVR + ++
Sbjct: 496 FKATHIL---DFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Score = 29.6 bits (66), Expect = 5.5
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 22/95 (23%)
Query: 648 GYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVEL----DEYLQMMSAIKSGHV 703
G ++IN R + S E L ++ + VE+ E Q + +G +
Sbjct: 1808 GMIAINPGR-----VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY---VAAGDL 1859
Query: 704 AYSRFA--KMAEMEEEKHEKEI----LKKQISVER 732
A + + ++I L+K +S+E
Sbjct: 1860 R----ALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 57.6 bits (140), Expect = 2e-10
Identities = 14/62 (22%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNF---GETISGEELHEILREIDSNMNGQVELDEYLQMM 695
F ++D+++ G++ ++++ L+NF ++ E L + D + +G + +DE+ M+
Sbjct: 47 FYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMI 106
Query: 696 SA 697
A
Sbjct: 107 KA 108
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 57.6 bits (140), Expect = 2e-10
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNF---GETISGEELHEILREIDSNMNGQVELDEYLQMM 695
F+I+DK++ G++ +++ LK F G ++ E +L DS+ +G++ DE+ +M+
Sbjct: 47 FEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMV 106
Query: 696 S 696
+
Sbjct: 107 A 107
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 57.5 bits (139), Expect = 9e-10
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 610 EMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGE 669
+ ++ ++ + + + DK G ++ ++ L G +S
Sbjct: 79 QFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALG--MSKA 136
Query: 670 ELHEILREIDSNMNGQVELDEYLQMM 695
E E ++D+N NG++ LDE L +
Sbjct: 137 EAAEAFNQVDTNGNGELSLDELLTAV 162
Score = 46.3 bits (110), Expect = 6e-06
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSIND----IRRGLKNFGETISGEEL-----------H 672
T ++ KRF D + G + D + + FG+ E+
Sbjct: 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFD 61
Query: 673 EILREIDSNMNGQVELDEYLQMMS 696
+ +E +G + ++++++
Sbjct: 62 YLAKEAGVGSDGSLTEEQFIRVTE 85
Score = 28.6 bits (64), Expect = 4.8
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 18/79 (22%)
Query: 664 ETISGEELHEILREIDSNMNGQVELDEYLQMMSAI-----------------KSGHVAYS 706
+ G + I+ D N +GQ+ DE+ ++A+ +G ++
Sbjct: 97 NRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLD 156
Query: 707 RFAK-MAEMEEEKHEKEIL 724
+ + + + E+L
Sbjct: 157 ELLTAVRDFHFGRLDVELL 175
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 56.6 bits (137), Expect = 1e-09
Identities = 14/77 (18%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 632 INQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEY 691
+N + + F +D++ G V +++R+ + G +S + L I++ NG++ D+Y
Sbjct: 69 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSK--NGRIFFDDY 126
Query: 692 LQMMSAIKSGHVAYSRF 708
+ +++ + +
Sbjct: 127 VACCVKLRALTDFFRKR 143
Score = 38.9 bits (91), Expect = 0.002
Identities = 10/78 (12%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 636 IKRFQIMDKERKGYVSINDIRRGLKNFG-----ETISGEELHEILREIDSNMNGQVELDE 690
+ + + G V +++R L G S E ++ +D + G++ +
Sbjct: 2 VYTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNA 61
Query: 691 YLQMMSAIKSGHVAYSRF 708
+ ++ +A+ + +
Sbjct: 62 FKELWAALNAWKENFMTV 79
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 57.3 bits (139), Expect = 1e-09
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLK-----------NFGETISGEELHEIL 675
T EE + + F+ +D G + ++ G + + + E+ IL
Sbjct: 34 TTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHIL 93
Query: 676 REIDSNMNGQVELDEYLQMMS 696
+ +D + NG +E E++ +
Sbjct: 94 QSVDFDRNGYIEYSEFVTVCM 114
Score = 55.0 bits (133), Expect = 8e-09
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
L++E + + FQ D + G ++ ++ R + E H++L+E D N +G+V
Sbjct: 120 LSRERL---LAAFQQFDSDGSGKITNEELGRLFGV--TEVDDETWHQVLQECDKNNDGEV 174
Query: 687 ELDEYLQMMSAI 698
+ +E+++MM I
Sbjct: 175 DFEEFVEMMQKI 186
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 57.6 bits (139), Expect = 2e-09
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGET-ISGEELHEILREIDSNMNGQVELDEYLQMMSA 697
F +D V + +R + E+ + +E+D N G V DE+ SA
Sbjct: 136 FDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASA 195
Query: 698 IK 699
+K
Sbjct: 196 VK 197
Score = 49.5 bits (118), Expect = 8e-07
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 617 RASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGL-KNFGETISGEELHEIL 675
R IP T E + I+ F+ DK G + +++ G + + +I
Sbjct: 32 ERIRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDIT 91
Query: 676 ---------REIDSNMNGQVELDEYLQMM 695
G + E+L+
Sbjct: 92 KRAFDKSRTLGSKLENKGSEDFVEFLEFR 120
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 56.2 bits (136), Expect = 2e-09
Identities = 13/77 (16%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 632 INQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEY 691
+N + + F D +R G V ++++ L G ++ + ++ I + + +G++ D+Y
Sbjct: 71 LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYST--SGKITFDDY 128
Query: 692 LQMMSAIKSGHVAYSRF 708
+ +++ ++ R
Sbjct: 129 IACCVKLRALTDSFRRR 145
Score = 36.2 bits (84), Expect = 0.014
Identities = 10/72 (13%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 644 KERKGYVSINDIRRGLKNFG-----ETISGEELHEILREIDSNMNGQVELDEYLQMMSAI 698
+ G + ++++R L G + + E ++ +D +M+G + +E+ ++ + +
Sbjct: 12 AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVL 71
Query: 699 KSGHVAYSRFAK 710
+ F
Sbjct: 72 NGWRQHFISFDS 83
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 56.9 bits (137), Expect = 2e-09
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 610 EMGQMVNRASRDKIPINLTKEEINQYIKR-FQIMDKERKGYVSINDIRRGLKNFGETISG 668
E M + + I F+ MD G V + + + KNF +
Sbjct: 81 EYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQ--LQC 138
Query: 669 EELHEILREIDSNMNGQVELDEYLQMM 695
++ + I +L+ Y ++
Sbjct: 139 ADVPAVYNVITDGGKVTFDLNRYKELY 165
Score = 41.4 bits (97), Expect = 3e-04
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 627 LTKEEINQYIKRFQIM-DKERKGYVSINDIRRGLKNFGETISG---------------EE 670
L + + F D G + ND + + E G +E
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDE 61
Query: 671 LHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEME 715
++ D N + V +EYL M + + + +
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNR 106
Score = 28.7 bits (64), Expect = 4.9
Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 25/89 (28%)
Query: 640 QIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMSAI- 698
+ +K S+ D+ +N + + + +D + +G V+L+E+
Sbjct: 84 AMWEKTIATCKSVADLPAWCQNR--------IPFLFKGMDVSGDGIVDLEEFQNYCKNFQ 135
Query: 699 ----------------KSGHVAYSRFAKM 711
+R+ ++
Sbjct: 136 LQCADVPAVYNVITDGGKVTFDLNRYKEL 164
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 56.7 bits (137), Expect = 2e-09
Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 632 INQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEY 691
+N + + F D +R G V ++++ L G +S + ++ I + + NG++ D+Y
Sbjct: 102 LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYST--NGKITFDDY 159
Query: 692 LQMMSAIKSGHVAYSRF 708
+ +++ ++ R
Sbjct: 160 IACCVKLRALTDSFRRR 176
Score = 44.4 bits (105), Expect = 4e-05
Identities = 10/84 (11%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFG-----ETISGEELHEILREIDSNMNG 684
+ + + + G + ++++R L G + + E ++ +D +M+G
Sbjct: 29 GQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSG 88
Query: 685 QVELDEYLQMMSAIKSGHVAYSRF 708
+ +E+ ++ + + + F
Sbjct: 89 TMGFNEFKELWAVLNGWRQHFISF 112
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 53.4 bits (129), Expect = 3e-09
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 628 TKEEINQYIKRFQIMDKER--KGYVSINDIRRGLKNFGE--TISGEELHEILREIDSNMN 683
+ EEI F++ + +S +++ ++ G L E++ E+D N +
Sbjct: 3 SPEEI---KGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGD 59
Query: 684 GQVELDEYLQMMSAI 698
G+V +E+L MM I
Sbjct: 60 GEVSFEEFLVMMKKI 74
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 54.4 bits (131), Expect = 3e-09
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 612 GQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEEL 671
G + + +S P +T+E+ Y+ +F+ + + ++S + + +S EL
Sbjct: 1 GSLQDNSSYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPEL 58
Query: 672 HEILREIDSNMNGQVELDEYLQMM 695
I D++ +G + L E+
Sbjct: 59 SYIWELSDADCDGALTLPEFCAAF 82
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 56.7 bits (137), Expect = 3e-09
Identities = 14/100 (14%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
++ + + RF+ +D+ +KGY+S D L+ G I+ + + +
Sbjct: 22 GFSQASLLRLHHRFRALDRNKKGYLSRMD----LQQIGALAVNPLGDRIIESFFPDGSQR 77
Query: 686 VELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILK 725
V+ ++++++ + + + E + L
Sbjct: 78 VDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLH 117
Score = 45.9 bits (109), Expect = 1e-05
Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 586 PTEDEIMFILQEKQ---------LKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYI 636
P D I+ ++ + F E + + P+N + ++
Sbjct: 61 PLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKL---H 117
Query: 637 KRFQIMDKERKGYVSINDIRRGLKN-FGETISGEELHEI----LREIDSNMNGQVELDEY 691
FQ+ D +R G +S +++ + L+ G ++ E+L I ++E D + +G V E+
Sbjct: 118 YAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEF 177
Query: 692 LQMMS 696
+ +
Sbjct: 178 TKSLE 182
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 56.0 bits (135), Expect = 3e-09
Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Query: 610 EMGQMVNRASRDKIPINLTKEEINQYIKR-FQIMDKERKGYVSINDIRRGLKNFGETISG 668
E +M + E + +Y+ F + D + ++ ++G I
Sbjct: 85 EWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYG--IPK 142
Query: 669 EELHEILREIDSNMNGQVELDEYLQMM 695
+ + V + + ++
Sbjct: 143 SDCDAAFDTLSDGGKTMVTREIFARLW 169
Score = 43.3 bits (102), Expect = 8e-05
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 16/107 (14%)
Query: 627 LTKEEINQYIKRF-QIMDKERKGYVSINDIRRGLKNFGETISGEE--------------- 670
L+ + N+ ++ F D G + +D +K S
Sbjct: 6 LSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLI 65
Query: 671 LHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEE 717
+ + D N + QV +E+L+M + +
Sbjct: 66 WDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMN 112
Score = 29.0 bits (65), Expect = 4.0
Identities = 13/138 (9%), Positives = 39/138 (28%), Gaps = 28/138 (20%)
Query: 602 EASDF--LANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGL 659
E DF ++ + + + K + + D+ V+ + +
Sbjct: 31 EWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEWLKMW 90
Query: 660 KNFGETISGEE---------LHEILREIDSNMNGQVELDEYLQMMSAI------------ 698
+++ E ++ + D++ + ++ EY + +
Sbjct: 91 AECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFD 150
Query: 699 -----KSGHVAYSRFAKM 711
V FA++
Sbjct: 151 TLSDGGKTMVTREIFARL 168
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 58.5 bits (142), Expect = 4e-09
Identities = 16/57 (28%), Positives = 36/57 (63%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
F++ DK+ G +S ++ + +I EEL I+ ++D+N +G+V+ +E+++M+
Sbjct: 423 FKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEML 479
Score = 45.1 bits (107), Expect = 7e-05
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNF--------------GETISGEELHE 673
T +E Q + F+ +D G + +++ RG F + +++
Sbjct: 326 TLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDS 385
Query: 674 ILREIDSNMNGQVELDEYL 692
++ +D + +G +E E++
Sbjct: 386 LMPLLDMDGSGSIEYSEFI 404
Score = 31.2 bits (71), Expect = 1.2
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 636 IKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
I++FQ K + + + L ET ++L EI R++D+N +G ++ DE ++
Sbjct: 303 IRQFQAEKKLAQAALLY--MASKLTTLDET---KQLTEIFRKLDTNNDGMLDRDELVRGY 357
Query: 696 SAIKSGHVAYSRFAKMAEMEEEKHEKEILKKQISVERSG 734
S E + + + L + ++ SG
Sbjct: 358 HEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSG 396
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 52.6 bits (127), Expect = 5e-09
Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISG------EELHEILREIDS 680
+ + + F+ +D GYV+ +++ + + E ++++ D
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADK 60
Query: 681 NMNGQVELDEYLQMMS 696
N +G++ +E+L +
Sbjct: 61 NSDGKISKEEFLNANA 76
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 58.0 bits (141), Expect = 5e-09
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 15/105 (14%)
Query: 419 LSKKNALELFPMIRGDKLCGAIVYY---DGQQDDARMCLAIALTATRHGATVANHVRVTN 475
L + A + P++R DK+ GA Y D + R+ V +
Sbjct: 122 LDAEQACSIVPVLRRDKVFGAT--YDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALE 179
Query: 476 LIKDDKG-KVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRM 519
+ + D +VR +A ++NA G + D+I +
Sbjct: 180 IRRVDGAWEVR--------CDAG-SYRAAVLVNAAGAWCDAIAGL 215
Score = 36.1 bits (84), Expect = 0.040
Identities = 11/49 (22%), Positives = 15/49 (30%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIH 89
E D L+IG G G+ G L ++ RS
Sbjct: 8 IEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAHYT 56
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 57.0 bits (137), Expect = 6e-09
Identities = 12/111 (10%), Positives = 42/111 (37%), Gaps = 12/111 (10%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISG----------EELHEIL 675
+ +++ +Q D + GY+ ++ ++ + + + +
Sbjct: 4 AFANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFM 63
Query: 676 REIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKK 726
D+ +G+++++E M+ + + R + A ++ +I +K
Sbjct: 64 SAYDATFDGRLQIEELANMILPQEENFLLIFR--REAPLDNSVEFMKIWRK 112
Score = 56.6 bits (136), Expect = 8e-09
Identities = 18/128 (14%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 604 SDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFG 663
+ + Q N + L +++K ++ D + GY+S +++ LK+
Sbjct: 77 EELANMILPQEENFLLIFRREAPLDNSV--EFMKIWRKYDADSSGYISAAELKNFLKDLF 134
Query: 664 --------ETISGEELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEME 715
E +++ D N +G+++L++ +++ A++ + + +++E
Sbjct: 135 LQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARIL-ALQENFLLQFKMDASSQVE 193
Query: 716 EEKHEKEI 723
++ ++I
Sbjct: 194 RKRDFEKI 201
Score = 48.1 bits (114), Expect = 4e-06
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 611 MGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGE----TI 666
+ N + K+ + E + K F D R G + ++ +K+ E +I
Sbjct: 174 LALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSI 233
Query: 667 SGEELHE----ILREIDSNMNGQVELDEYLQMMSA 697
SG +L + +L D N +G+++ E +
Sbjct: 234 SGGDLDKFRECLLTHCDMNKDGKIQKSELALCLGL 268
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 57.4 bits (139), Expect = 7e-09
Identities = 32/241 (13%), Positives = 61/241 (25%), Gaps = 22/241 (9%)
Query: 381 MAEELKWSKEEQEIPYYWVGIKAYDFVAGSKTVKSSY-----YLSKKNALELFPMIRGDK 435
++ + +G F+A + L + + +P IR
Sbjct: 74 LSRHNEDDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPD 133
Query: 436 LCGAIVY-YDGQQDDARMCLAIALTATRHGATVANHVRVTNLIKDDKG-KVRGAHLRDEL 493
+ G A G + VT + DD G +
Sbjct: 134 NYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIE-------- 185
Query: 494 TGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVLPGYYSPDQMGLLDPS 553
T + +AK I G + + Q + + Y ++
Sbjct: 186 TADG-EYQAKKAIVCAGTWVKDLLPELPVQPVRKVF---AWYQADGRYSVKNKFPAFTGE 241
Query: 554 TSDGRVIFFLPWLKHTIAGTTDLPCDVTHHPKPTEDEIMFILQEKQLKEASDFLANEMGQ 613
+G + P + V H ++ + F EA FL N +
Sbjct: 242 LPNGDQYYGFPAENDALKIGKHNGGQVIH---SADERVPFAEVVSDGSEAFPFLRNVLPG 298
Query: 614 M 614
+
Sbjct: 299 I 299
Score = 46.6 bits (111), Expect = 2e-05
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDF--ASGTSSRSTKLIHGGVRYLQKAI 99
++D++IIG G+ G+ A GL + + G+ T +R+
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDT----RLIRHAYGE- 56
Query: 100 MNLDIEQYRMVKEAL 114
+ +V A
Sbjct: 57 ---GEKYVPLVLRAQ 68
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 54.7 bits (132), Expect = 8e-09
Identities = 12/81 (14%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELD 689
I ++ ++ D +R G + +++ + G ++ E L+ ++ S+ G ++ D
Sbjct: 74 NNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLN-EHLYSMIIRRYSDEGGNMDFD 132
Query: 690 EYLQMMSAIKSGHVAYSRFAK 710
++ + + + A+ K
Sbjct: 133 NFISCLVRLDAMFRAFKSLDK 153
Score = 44.3 bits (105), Expect = 3e-05
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 630 EEINQYIKRFQIMDKERKGYVSINDIRRGLKNFG--------ETISGEELHEILREIDSN 681
EE+ Q+ + F + + VS ++ L + + ++ +DS+
Sbjct: 1 EEVRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD 59
Query: 682 MNGQVELDEYLQMMSAIKSGHVAYSRF 708
G++ +E+ + + IK Y +F
Sbjct: 60 TTGKLGFEEFKYLWNNIKKWQAIYKQF 86
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 52.4 bits (126), Expect = 9e-09
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
+T E+ Y+ +F+ + + G++ + + + EL I D + +G +
Sbjct: 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGAL 60
Query: 687 ELDEYLQMM 695
LDE+
Sbjct: 61 TLDEFCAAF 69
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 54.0 bits (130), Expect = 1e-08
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 605 DFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGE 664
+F+ + ++ ++ R + D + G V++ D R L FG
Sbjct: 76 EFVTGAVKRLRDKPDRFAEMARPFLHAA------LGVADTDGDGAVTVADTARALTAFG- 128
Query: 665 TISGEELHEILREIDSNMNGQVELDEYLQMM 695
+ + + +D++ +G+V E +
Sbjct: 129 -VPEDLARQAAAALDTDGDGKVGETEIVPAF 158
Score = 44.0 bits (104), Expect = 4e-05
Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 15/95 (15%)
Query: 637 KRFQIMDKERKGYVSINDIRRGLKNFGETISGEE---------------LHEILREIDSN 681
RF D++ G++ +D K + D +
Sbjct: 8 ARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRD 67
Query: 682 MNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEE 716
+ ++ +E++ +
Sbjct: 68 GDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHA 102
Score = 29.7 bits (67), Expect = 2.2
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 664 ETISGEELHEILREIDSNMNGQVELDEYLQMMSAI-----------------KSGHVAYS 706
++ LH L D++ +G V + + + ++A G V +
Sbjct: 93 AEMARPFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVGET 152
Query: 707 RFAKM 711
Sbjct: 153 EIVPA 157
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 53.6 bits (129), Expect = 2e-08
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 629 KEEINQYIKR-FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVE 687
K + + F+ +D +S ++ G + ID+N +G +
Sbjct: 89 KSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG--LDKTMAPASFDAIDTNNDGLLS 146
Query: 688 LDEYLQMM 695
L+E++
Sbjct: 147 LEEFVIAG 154
Score = 40.9 bits (96), Expect = 4e-04
Identities = 8/82 (9%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETIS-----GEELHEILREI---- 678
+ + + F +D ++ G ++ D + F + + L + L +
Sbjct: 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNF 60
Query: 679 --DSNMNGQVELDEYLQMMSAI 698
++ ++ M +
Sbjct: 61 LTAVAGGKGIDETTFINSMKEM 82
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 52.1 bits (125), Expect = 2e-08
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
+ + +Y + F DK G+++ R L + +L I D + +G++
Sbjct: 8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKL 65
Query: 687 ELDEYLQMM 695
+E++ M
Sbjct: 66 TAEEFILAM 74
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 54.0 bits (130), Expect = 2e-08
Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 612 GQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETI-SGEE 670
G M N S + +E + + + F M + G ++++ + L G + +
Sbjct: 1 GHMGNGKSIAGDQKAVPTQETHVWYRTF--MMEYPSGLQTLHEFKTLLGLQGLNQKANKH 58
Query: 671 LHEILREIDSNMNGQVELDEYLQMMSAIKSG 701
+ ++ D+N +G V+ E++ ++ I
Sbjct: 59 IDQVYNTFDTNKDGFVDFLEFIAAVNLIMQE 89
Score = 41.7 bits (98), Expect = 3e-04
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELH------EILREIDSNMNGQVELDEYL 692
F++ D + G + N++ + L + +ID N +G++ L+E++
Sbjct: 99 FKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFI 158
Query: 693 QMMS 696
M+
Sbjct: 159 NGMA 162
Score = 35.5 bits (82), Expect = 0.034
Identities = 15/95 (15%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 633 NQYIKR-FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEY 691
N++I + + D + G+V + + + ++L + D++ NG ++ +E
Sbjct: 56 NKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNEL 115
Query: 692 LQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKK 726
L M A+++ + + E+ + K
Sbjct: 116 LDMFMAVQALN-------GQQTLSPEEFINLVFHK 143
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 51.2 bits (123), Expect = 2e-08
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
++ E +Y + F DK+ G+VS ++R G + L I D+ G++
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKL 61
Query: 687 ELDEYLQMM 695
D++
Sbjct: 62 SKDQFALAF 70
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 52.6 bits (127), Expect = 2e-08
Identities = 17/89 (19%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 629 KEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVEL 688
+EI + KRF+ +D + G +S+ + + E + ++ D++ NG+V+
Sbjct: 2 ADEIKRLGKRFKKLDLDNSGSLSVEE----FMSLPELQQNPLVQRVIDIFDTDGNGEVDF 57
Query: 689 DEYLQMMSAIKSGHVAYSRFAKMAEMEEE 717
E+++ + S+F+ + E++
Sbjct: 58 KEFIEGV----------SQFSVKGDKEQK 76
Score = 49.2 bits (118), Expect = 4e-07
Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNF-GETISGEELH----EILREIDSNMNGQVELDEYLQ 693
F+I D ++ GY+S ++ + LK G + +L + + D + +G++ +E+
Sbjct: 81 FRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCA 140
Query: 694 MMS 696
++
Sbjct: 141 VVG 143
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 55.5 bits (134), Expect = 4e-08
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
FQ D++ G +S++++ + + E++ IDSN +G V+ +E+ +M+
Sbjct: 432 FQKFDQDGNGKISVDELASVFGLDH--LESKTWKEMISGIDSNNDGDVDFEEFCKMI 486
Score = 48.9 bits (117), Expect = 4e-06
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFG--------ETISGEELHEILREI 678
++EE + F+ +DK G + ++ G E+ IL
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA 399
Query: 679 DSNMNGQVELDEYL 692
D + NG ++ E++
Sbjct: 400 DFDRNGYIDYSEFV 413
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 54.8 bits (133), Expect = 5e-08
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE-LDDFASGTSSRSTKLIHGGVRYLQ--- 96
+ D ++IG G G A G + + E + +GTSSR++++IH G+ Y
Sbjct: 3 TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSL 62
Query: 97 KAIMNLDIEQYRMVKEALHERSI 119
KA + + ++ E R +
Sbjct: 63 KARLC--VRGKHLLYEYCAARGV 83
Score = 41.0 bits (97), Expect = 0.001
Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 14/117 (11%)
Query: 418 YLSKKNALELFPMIRGDK--LC--GAIVYYDGQQDDARMCLAIALTATRHGATVANHVRV 473
++ A L P + + IV D + LA A GA + H +
Sbjct: 120 HIDGAAARRLEPALHCTAALVSPSTGIV------DSHALMLAYQGDAESDGAQLVFHTPL 173
Query: 474 TNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVP 530
+G D + L + +INA G + R +G + P
Sbjct: 174 IAGRVRPEGGFE----LDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPP 226
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 52.9 bits (127), Expect = 5e-08
Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEEL-HEILREIDSNMNG 684
L+ E +Q+ K+F M + G +++ + ++ + S + ++ D N +G
Sbjct: 10 ELSATECHQWYKKF--MTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDG 67
Query: 685 QVELDEYLQMMSAIKSG 701
++ EY+ +S + G
Sbjct: 68 YIDFMEYVAALSLVLKG 84
Score = 40.5 bits (95), Expect = 7e-04
Identities = 13/79 (16%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 626 NLTKEEINQYIKR-FQIMDKERKGYVSINDIRRGLKN-FGETISGEELH------EILRE 677
+ K +++Q ++ F++ D + G + ++ +K E + + +
Sbjct: 80 LVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDK 139
Query: 678 IDSNMNGQVELDEYLQMMS 696
ID N +G++ L+E+++ +
Sbjct: 140 IDINGDGELSLEEFMEGVQ 158
Score = 32.8 bits (75), Expect = 0.26
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 633 NQYIKR-FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEY 691
N+Y+++ F+ D + GY+ + L + ++L + D + NG ++ E
Sbjct: 51 NKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGEL 110
Query: 692 LQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKK 726
L ++ AI + M E+ + K
Sbjct: 111 LNIIKAI------RAINRCNEAMTAEEFTNMVFDK 139
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 52.5 bits (126), Expect = 8e-08
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQ 685
+ +I + RF +DK G +S D +R G+ I+ S Q
Sbjct: 22 GFSHSQITRLYSRFTSLDKGENGTLSREDFQRIP-ELAINPLGD---RIINAFFSEGEDQ 77
Query: 686 VELDEYLQMMS 696
V +++ ++
Sbjct: 78 VNFRGFMRTLA 88
Score = 44.0 bits (104), Expect = 6e-05
Identities = 13/63 (20%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 639 FQIMDKERKGYVSINDIRRGLK-NFGETISGEELHEI----LREIDSNMNGQVELDEYLQ 693
F++ D ++ +S +++ + L+ G IS E+L I ++E D + + + E+++
Sbjct: 119 FRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVK 178
Query: 694 MMS 696
++
Sbjct: 179 VLE 181
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 54.4 bits (131), Expect = 8e-08
Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 17/199 (8%)
Query: 419 LSKKNALELFPMIRGDKLCGAIVYY---DGQQDDARMCLAIALTATRHGATVANHVRVTN 475
L + F + + G D A+ A GAT+ VT
Sbjct: 121 LKATDIERRFGFRGLPRDYEG--FLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTE 178
Query: 476 LIKDDKG-KVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGV 534
L+ D G V T + +A V+ A GP+T+ + ++ +
Sbjct: 179 LVPDADGVSVT--------TDRG-TYRAGKVVLACGPYTNDLLEPLGARLAYSVYEMAIA 229
Query: 535 H--IVLPGYYSPDQMGLLDPSTSDGRVIFFLPWLKHTIAGTTDLPCDVTHHPKPTEDEIM 592
P +P P+ D + + D P
Sbjct: 230 AYRQATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAAT 289
Query: 593 FILQEKQLKEASDFLANEM 611
+ +Q+ S +L + +
Sbjct: 290 GVADRRQMDRLSGWLRDHL 308
Score = 47.8 bits (114), Expect = 9e-06
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFA--SGTSSRSTKLIHGGVRYLQKA 98
E +DV+++GGG G A RG + ++E F +G +S + R
Sbjct: 3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAE----RHWRL---- 54
Query: 99 IMNLDIEQYRMVKEAL 114
+ +R+ E L
Sbjct: 55 -QYTQEDLFRLTLETL 69
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 54.3 bits (131), Expect = 8e-08
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
F + D ++ G ++ ++ IS + +++L E D N + ++ DE++ MM
Sbjct: 441 FNLFDTDKSGKITKEELANLFGLTS--ISEKTWNDVLGEADQNKDNMIDFDEFVSMM 495
Score = 48.2 bits (115), Expect = 7e-06
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISG--------EELHEILREI 678
T EE + F+ +DK G + ++ G + EE+ IL+E+
Sbjct: 349 TTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEV 408
Query: 679 DSNMNGQVELDEYL 692
D + NG +E E++
Sbjct: 409 DFDKNGYIEYSEFI 422
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 54.3 bits (131), Expect = 8e-08
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMM 695
F++ D + G +S ++ + E +L E+D N +G+V+ DE+ QM+
Sbjct: 424 FRMFDSDNSGKISSTELATIFGVSD--VDSETWKSVLSEVDKNNDGEVDFDEFQQML 478
Score = 48.5 bits (116), Expect = 6e-06
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNF-----------GETISGEELHEIL 675
+++E + F MDK G + ++ G K + E+ ++L
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 388
Query: 676 REIDSNMNGQVELDEYL 692
+D + NG +E E++
Sbjct: 389 DAVDFDKNGYIEYSEFV 405
Score = 29.3 bits (66), Expect = 5.4
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 669 EELHEILREIDSNMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKKQI 728
+EL I ++D N +GQ++ E ++ K + A M + +HE + + +
Sbjct: 335 KELTAIFHKMDKNGDGQLDRAE---LIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAV 391
Query: 729 SVERSG 734
+++G
Sbjct: 392 DFDKNG 397
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 51.0 bits (122), Expect = 2e-07
Identities = 14/93 (15%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 611 MGQMVNRASRDKIPI--NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISG 668
MGQ + ++ ++ ++ K+F +++ G + +++ +R K +
Sbjct: 1 MGQQFSWEEAEENGAVGAADAAQLQEWYKKF--LEECPSGTLFMHEFKRFFKVPDNEEAT 58
Query: 669 EELHEILREIDSNMNGQVELDEYLQMMSAIKSG 701
+ + + R D+N + ++ EY+ ++ + G
Sbjct: 59 QYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRG 91
Score = 37.5 bits (87), Expect = 0.007
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 17/75 (22%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELH-----------------EILREIDSN 681
F+I DK+R G + ++ +++ + + I +D N
Sbjct: 101 FKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDEN 160
Query: 682 MNGQVELDEYLQMMS 696
+GQ+ L+E+++
Sbjct: 161 GDGQLSLNEFVEGAR 175
Score = 36.7 bits (85), Expect = 0.012
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 622 KIPINLTKEEINQYIKR-FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDS 680
+ EE QY++ F+ D + + L +L + D
Sbjct: 47 RFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDK 106
Query: 681 NMNGQVELDEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKK 726
+ NG ++ E L ++ +I A S + + + +E++ +
Sbjct: 107 DRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDR 152
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 47.9 bits (114), Expect = 3e-07
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 623 IPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNM 682
+ + Y K ++ ++ G V D LK G + L +I D++
Sbjct: 1 LSLTQLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDG 58
Query: 683 NGQVELDEYLQMM 695
G + E+ +
Sbjct: 59 KGVLSKQEFFVAL 71
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 52.4 bits (126), Expect = 5e-07
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 416 SYYLSKKNALELFPMIRGDKLCGAI-VYYDGQQDDARMCLAIALTATRHGATVANHVRVT 474
LS EL+P++ G+ + G + V DG AR + G T VT
Sbjct: 116 GRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVT 175
Query: 475 NLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRM 519
+ + G+V G T + A V++ G + I M
Sbjct: 176 GIEQSG-GRVTGVQ-----TADG-VIPADIVVSCAGFWGAKIGAM 213
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 49.8 bits (119), Expect = 5e-07
Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 611 MGQMVNRASRDKIPI-----NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGET 665
MG+ ++ + + + T+ EI ++ K F + G++S+ + ++ NF
Sbjct: 1 MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGF--LRDCPSGHLSMEEFKKIYGNFFPY 58
Query: 666 ISGEELHE-ILREIDSNMNGQVELDEYLQMMSAIKSG 701
+ E + R D+N +G ++ E++ +S G
Sbjct: 59 GDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRG 95
Score = 35.2 bits (81), Expect = 0.034
Identities = 19/131 (14%), Positives = 50/131 (38%), Gaps = 21/131 (16%)
Query: 587 TEDEIMFILQEKQLKEASDFLANEMGQMVNRASRDKI--------PINLTKEEINQYIKR 638
+ +E I + A + + + I ++ ++ Q +K
Sbjct: 44 SMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKW 103
Query: 639 -FQIMDKERKGYVSINDIRRGLKNFG------------ETISGEELHEILREIDSNMNGQ 685
F + D + GY+S ++ ++ E+ + +I R++D+N +G+
Sbjct: 104 AFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGK 163
Query: 686 VELDEYLQMMS 696
+ L+E+++
Sbjct: 164 LSLEEFIRGAK 174
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 51.4 bits (122), Expect = 9e-07
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 596 QEKQLKEASDFLANEM-GQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSIND 654
+QL NE+ Q++ R ++ +++E++N++ F D+++ G + D
Sbjct: 692 GWEQLLTTIARTINEVENQILTRDAK-----GISQEQMNEFRASFNHFDRKKTGMMDCED 746
Query: 655 IRRGLKNFGETISGEELHEILREIDSNMNGQVELDEYLQMMS 696
R L + G + E I+ +D N G V ++ MS
Sbjct: 747 FRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDFMS 788
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 50.6 bits (122), Expect = 1e-06
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 419 LSKKNALELFPMIRGDKLCGAIVYY---DGQQDDARMCLAIALTATRHGATVANHVRVTN 475
++ + A E+ P++ ++ A + DG+ D A A+ A +GA + + V
Sbjct: 117 ITPEEAKEIVPLLDISEVIAAS--WNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKG 174
Query: 476 LIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRM 519
+ ++ +++G T K +K V+NAT + + I M
Sbjct: 175 FLIEN-NEIKGVK-----TNKG-IIKTGIVVNATNAWANLINAM 211
Score = 43.7 bits (104), Expect = 1e-04
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIM 100
E+ ++++IGGG G A + RG + ++E SG++ R G+R
Sbjct: 4 EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIGSGSTFRCG----TGIRQQ----- 54
Query: 101 NLDIEQYRMVKEALHERSIRRGDVLSAWSGI 131
D R + +RS+ S G
Sbjct: 55 FNDEANVR-----VMKRSVELWKKYSEEYGF 80
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 50.8 bits (122), Expect = 1e-06
Identities = 33/220 (15%), Positives = 64/220 (29%), Gaps = 29/220 (13%)
Query: 1 MSEDGPLGVKPVFAAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALD 60
M + S + P+ PR + + E DV++ G G G +++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVDATPIRPRSATTVT-EWDYEADVVVAGYGIAGVAASIE 59
Query: 61 AVTRGLKTALVELDDFASGTSSRSTKLIH--GGVRYLQKAIMNLDIEQYR---------- 108
A G ++E G ++ + I+ GG + + E +
Sbjct: 60 AARAGADVLVLERTSGWGGATALAGGFIYLGGGTPLQKACGFDDSPENMKTFMMAALGPG 119
Query: 109 --------MVKEA------LHERSIRRGDVLSAWSGIRPLVSDPNKAGDTQSIARNHIVH 154
+ + L + + + G P D ++ A + +
Sbjct: 120 ADEEKITDYCEGSVEHYNWLVDCGVPFKESFWGEPGWEPPFDDGLMYSGGENAAPFNEIA 179
Query: 155 VS-PSNLVTIAGGKWTTYRAMASESIDALIEGKFNKAGAE 193
P V GK T + + L+E K G
Sbjct: 180 APAPRGHVPQMDGKRTGEKGGGYMLMKPLVE-TAEKLGVR 218
Score = 40.8 bits (96), Expect = 0.001
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 460 ATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKA-KSVINATG 510
A + G +RV L+ DD G+V G + GKE ++A + V+ ATG
Sbjct: 212 AEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQY--GKEVAVRARRGVVLATG 261
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 50.5 bits (121), Expect = 2e-06
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 9 VKPVFAAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKT 68
K + + ++ + E VL++G G+ G +L A G
Sbjct: 96 KKKKSWDDGWDQDKIQKAIAAGPS--------ETTQVLVVGAGSAGFNASLAAKKAGANV 147
Query: 69 ALVELDDFASGTSSRSTKLIHGGVRYLQKA 98
LV+ F+ G S S ++ Q A
Sbjct: 148 ILVDKAPFSGGNSMISAGGMNAVGTKQQTA 177
Score = 47.0 bits (112), Expect = 2e-05
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 459 TATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
A G + RV L+ +D V GA + + + + AKSV+ ATG
Sbjct: 259 AAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGK-HTGYYMIGAKSVVLATG 309
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 48.7 bits (116), Expect = 2e-06
Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 590 EIMFILQEKQLKEAS----DFLANEMGQMVNRASRDKIPI-----NLTKEEINQYIKRFQ 640
++F+ +Q D + +E+ R + + + TK+E+ + F+
Sbjct: 15 IVLFVKLLEQFGLIEAGLEDSVEDELEMATVRHRPEALELLEAQSKFTKKELQILYRGFK 74
Query: 641 IMDKERKGYVSINDIRRGLKNFGETISGEEL-HEILREIDSNMNGQVELDEYLQMMSAIK 699
G V+ + F H + D++ NG V +++++ +S +
Sbjct: 75 NECP--SGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILL 132
Query: 700 SG 701
G
Sbjct: 133 RG 134
Score = 35.6 bits (82), Expect = 0.032
Identities = 11/70 (15%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISG------------EELHEILREIDSNMNGQV 686
F + D + GY++ ++ +K + + + + +++D N +G V
Sbjct: 144 FNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVV 203
Query: 687 ELDEYLQMMS 696
+DE+++
Sbjct: 204 TIDEFIESCQ 213
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 49.2 bits (118), Expect = 3e-06
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 13/104 (12%)
Query: 419 LSKKNALELFPMIRGDKLCGAIVY--YDGQQDDARMCLAIALTATRHGATVANHVRVTNL 476
L + +P I + A ++ G A A GA V H RV +
Sbjct: 118 LEGDEINKRWPGITVPENYNA-IFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDF 176
Query: 477 IKDDKG-KVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRM 519
K+ T A +I + G + +
Sbjct: 177 DISPDSVKIE--------TANG-SYTADKLIVSMGAWNSKLLSK 211
Score = 44.2 bits (105), Expect = 1e-04
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIM 100
FDV+++G G+ G +G+KT L +D F ++ S HG R ++ A
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLL--VDAFDPPHTNGSH---HGDTRIIRHAY- 55
Query: 101 NLDIEQYRMVKEAL 114
E + +
Sbjct: 56 GEGREYVPLALRSQ 69
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 49.1 bits (118), Expect = 3e-06
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVR 93
++ ++IGGG GS A TAL E T+S + G +
Sbjct: 16 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAA----GMLG 64
Score = 48.0 bits (115), Expect = 6e-06
Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 31/156 (19%)
Query: 419 LSKKNALELFPMIRGDKLCGAIVY-YDGQQDDARMCLAIALTATRHGATVANHVRVTNLI 477
SK+ LE P GD + GA D + +C A A GA + H V ++
Sbjct: 133 YSKEEVLEKEPYASGD-IFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVE 191
Query: 478 KDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDD---------GQVQKIC 528
+D G+ D+ A V+ A+G ++ + G+ +
Sbjct: 192 RD--GEALFIKTPSG------DVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVW 243
Query: 529 VPSSGVHIVLPG---YYSPDQMGLLDPSTSDGRVIF 561
+ L Y P GR++
Sbjct: 244 NDDIPLTKTLYHDHCYIVP---------RKSGRLVV 270
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 49.3 bits (118), Expect = 4e-06
Identities = 19/91 (20%), Positives = 31/91 (34%)
Query: 8 GVKPVFAAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLK 67
G F + +D+ + E DV+IIG G G A+ A G K
Sbjct: 92 GFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAK 151
Query: 68 TALVELDDFASGTSSRSTKLIHGGVRYLQKA 98
L+E + G + + ++ Q
Sbjct: 152 VILLEKEPIPGGNTKLAAGGMNAAETKPQAK 182
Score = 48.2 bits (115), Expect = 7e-06
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 460 ATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
A + G + + RV +++D GKV G ++ E + +KA +V+ A G
Sbjct: 265 AVKRGTDIRLNSRVVRILEDASGKVTGVLVKGE-YTGYYVIKADAVVIAAG 314
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 48.5 bits (116), Expect = 6e-06
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 10 KPVFAAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTA 69
+P A + L + DV+++G G G A+ A G K
Sbjct: 102 EPTIAELAKDKSERQAALASAPH--------DTVDVVVVGSGGAGFSAAISATDSGAKVI 153
Query: 70 LVELDDFASGTSSRSTKLIHGGVRYLQKA 98
L+E + G + + ++ QKA
Sbjct: 154 LIEKEPVIGGNAKLAAGGMNAAWTDQQKA 182
Score = 46.2 bits (110), Expect = 3e-05
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 460 ATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPF 512
A + + + R ++KDDKG V+G ++ G W +KA +VI ATG F
Sbjct: 265 AVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYW-VKADAVILATGGF 316
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 46.7 bits (111), Expect = 6e-06
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 626 NLTKEEINQYIKRFQIMDKER--KGYVSINDIRRGLKNFGETISGEELHEILREIDSNMN 683
T EE+ + F+ + G + + + L I D N
Sbjct: 30 PFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALF-RNRNRRNLFADRIFDVFDVKRN 88
Query: 684 GQVELDEYLQMMS 696
G +E E+++ +
Sbjct: 89 GVIEFGEFVRSLG 101
Score = 38.2 bits (89), Expect = 0.004
Identities = 9/66 (13%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 639 FQIMDKERKGYVSINDIRRGLK----NFGETISGEELHE----ILREIDSNMNGQVELDE 690
F++ D + G++ +++ + +S + + + D +G++++DE
Sbjct: 117 FKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDE 176
Query: 691 YLQMMS 696
+ +S
Sbjct: 177 WKDFVS 182
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 47.2 bits (113), Expect = 1e-05
Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 13/110 (11%)
Query: 416 SYYLSKKNALELFPMIRGDKLCGAIVY------YDGQQDDARMCLAIALTATRHGATVAN 469
+ +L E P+I V G + A A A G +
Sbjct: 134 AEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQ 193
Query: 470 HVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRM 519
+ VT IKD KV G T + + A V A + + M
Sbjct: 194 NCEVTGFIKDG-EKVTGVK-----TTRG-TIHAGKVALAGAGHSSVLAEM 236
Score = 41.1 bits (97), Expect = 0.001
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 41 EEFDVLIIGGGATGSGCA--LDAVTRGLK-TALVELDDFASGTSSRSTKLIHGGVRYLQK 97
+ +D +I+GGG G A L A G+ A++E A G +R+T +R
Sbjct: 20 KSYDAIIVGGGGHGLATAYFL-AKNHGITNVAVLEKGWLAGGNMARNT----TIIRSN-- 72
Query: 98 AIMNLDIEQYRMVKEAL 114
L E + +++L
Sbjct: 73 ---YLWDESAGIYEKSL 86
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 45.6 bits (108), Expect = 2e-05
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 626 NLTKEEINQYIKRFQIMDKER--KGYVSINDIRRGLKNFGETISGEELHEILREIDSNMN 683
+ EI + F+ + G ++ + + L + S + D+ N
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKES-LFADRVFDLFDTKHN 99
Query: 684 GQVELDEYLQMMS 696
G + +E+ + +S
Sbjct: 100 GILGFEEFARALS 112
Score = 37.1 bits (86), Expect = 0.011
Identities = 10/66 (15%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 639 FQIMDKERKGYVSINDIRRGLK--------NFGETISGEELHEILREIDSNMNGQVELDE 690
FQ+ D +++G++ ++++ + N +T+ + + + E D+ +G+++ +E
Sbjct: 128 FQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEE 187
Query: 691 YLQMMS 696
+ ++
Sbjct: 188 WRSLVL 193
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 44.0 bits (104), Expect = 3e-05
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEEL-HEILREIDSNMNG 684
N TK E+ + F ++ G V+ ++ F H + D+ G
Sbjct: 14 NFTKRELQVLYRGF--KNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTG 71
Query: 685 QVELDEYLQMMSAIKSG 701
V+ ++++ +S + G
Sbjct: 72 SVKFEDFVTALSILLRG 88
Score = 31.7 bits (72), Expect = 0.55
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEE------------LHEILREIDSNMNGQV 686
F + D + GY++ ++ +K + + + +++D N +G V
Sbjct: 98 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 157
Query: 687 ELDEYLQMMS 696
LDE+L+
Sbjct: 158 TLDEFLESXQ 167
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 45.2 bits (107), Expect = 6e-05
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKT-ALVELDDFASGTSSRSTKLIHGGVRYLQKAI 99
+ +LI+G G G+ AL RG +++ S S+ + ++ + Q +
Sbjct: 5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGND--VNKVISSGQYSN 62
Query: 100 MNLDIEQY-RMVKEALHE 116
+IE + +EA +
Sbjct: 63 NKDEIEVNEILAEEAFNG 80
Score = 44.5 bits (105), Expect = 1e-04
Identities = 47/269 (17%), Positives = 74/269 (27%), Gaps = 46/269 (17%)
Query: 381 MAEEL--KWSKEEQEIPYY------WVGIKAYDFVAGSKTVKS------SYYLSKKNALE 426
+AEE W + PYY V+ + +
Sbjct: 73 LAEEAFNGWKNDPLFKPYYHDTGLLMSACSQEGLDRLGVRVRPGEDPNLVELTRPEQFRK 132
Query: 427 LFPMIR-GDKLCGAIVYY----DGQQDDARMCLAIALTATRHGATVANHV---RVTNLIK 478
L P G Y+ G +A A A R G RV LI
Sbjct: 133 LAPEGVLQGDFPGWKGYFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF 192
Query: 479 DDKGKVRGAHLRDELTGKEWDLKAKSVINATGPFTDSIRRMDDGQVQKICVPSSGVHIVL 538
++ V+GA D GK W +A+ G + P++ + +
Sbjct: 193 EN-NDVKGAVTAD---GKIW--RAERTFLCAGASAGQFLDFKN-----QLRPTAWTLVHI 241
Query: 539 PGYYSPDQMGLLD--PSTSDGRVIFFLP------WLK--HTIAGTTDLPCDVTHHPKPTE 588
P++ L P + FF +K G T++
Sbjct: 242 A--LKPEERALYKNIPVIFNIERGFFFEPDEERGEIKICDEHPGYTNMVQSADGTMMSIP 299
Query: 589 DEIMFILQEKQLKEASDFLANEMGQMVNR 617
E I +E + L M Q+ +R
Sbjct: 300 FEKTQIPKEAE-TRVRALLKETMPQLADR 327
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 43.8 bits (103), Expect = 7e-05
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEEL-HEILREIDSNMNG 684
++EE+ + + F + G ++ + F + + R DSN++G
Sbjct: 29 KFSEEELCSWYQSF--LKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDG 86
Query: 685 QVELDEYLQMMSAIKSG 701
++ EY+ + +G
Sbjct: 87 TLDFKEYVIALHMTTAG 103
Score = 34.2 bits (78), Expect = 0.080
Identities = 16/133 (12%), Positives = 44/133 (33%), Gaps = 23/133 (17%)
Query: 587 TEDEIMFILQEKQLKEASDFLANEMGQMVNRASRDKI--------PINLTKEEINQYIKR 638
T+ + I + A + + + + T + NQ ++
Sbjct: 52 TQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEW 111
Query: 639 -FQIMDKERKGYVSINDIRRGLKNFGETISGEELH--------------EILREIDSNMN 683
F + D + G +S N++ + + I+ E++ +I + N +
Sbjct: 112 AFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDD 171
Query: 684 GQVELDEYLQMMS 696
++ E+++
Sbjct: 172 DKLTEKEFIEGTL 184
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 43.3 bits (102), Expect = 8e-05
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 611 MGQMVNRASRDKIPI-----NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKN-FGE 664
MG+ ++ + + T++E+ Q+ K F G + ++ K F
Sbjct: 1 MGKSNSKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPS--GQLDAAGFQKIYKQFFPF 58
Query: 665 TISGEELHEILREIDSNMNGQVELDEYLQMMSAIKSG 701
+ + D N +G++E E++Q +S G
Sbjct: 59 GDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRG 95
Score = 36.0 bits (83), Expect = 0.023
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELH------------EILREIDSNMNGQV 686
F++ D + GY++ N++ + + + I +D N +G++
Sbjct: 105 FKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKL 164
Query: 687 ELDEYLQMMS 696
L E+ +
Sbjct: 165 TLQEFQEGSK 174
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 43.9 bits (103), Expect = 1e-04
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKN-FGETISGEELHEILREIDSNMNG 684
TK+E+ + F+ G V + + F + + H + D++ NG
Sbjct: 87 KFTKKELQSLYRGFKNECP--TGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNG 144
Query: 685 QVELDEYLQMMSAIKSGHV 703
+ ++++ +S + G V
Sbjct: 145 AIHFEDFVVGLSILLRGTV 163
Score = 36.6 bits (84), Expect = 0.021
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEE------------LHEILREIDSNMNGQV 686
F + D + G ++ ++ +K+ + + + +++D N +G V
Sbjct: 171 FNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVV 230
Query: 687 ELDEYLQMMS 696
+DE+L+
Sbjct: 231 TIDEFLETCQ 240
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 41.9 bits (98), Expect = 1e-04
Identities = 13/126 (10%), Positives = 46/126 (36%), Gaps = 19/126 (15%)
Query: 582 HHPKPTEDEIMFILQEKQLKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQI 641
P + + + +K + + + ++ +K ++ +E+ + F++
Sbjct: 24 EEPAASFSQPGSMGLDKNTVHDQEHIMEHLEGVI-----NKPEAEMSPQELQLHY--FKM 76
Query: 642 MDKERKGYVSINDIRRGLKNFGETISGEELH------------EILREIDSNMNGQVELD 689
D + + ++ + + + E+ +LR+ D N +G ++
Sbjct: 77 HDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYA 136
Query: 690 EYLQMM 695
E+ + +
Sbjct: 137 EFAKSL 142
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 42.5 bits (100), Expect = 1e-04
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 611 MGQMVNRASRDKIPI-----NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGET 665
MG ++ S+D + + EI Q+ K F G ++ D + K F
Sbjct: 1 MGAKTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPS--GQLAREDFVKIYKQFFPF 58
Query: 666 ISGEEL-HEILREIDSNMNGQVELDEYLQMMSAIKSG 701
S E+ + + D + NG + +E++ ++S G
Sbjct: 59 GSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRG 95
Score = 37.9 bits (88), Expect = 0.004
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 631 EINQYIKR-FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELD 689
+ F + DK+ G++ + L E+L D N +G + D
Sbjct: 60 SPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFD 119
Query: 690 EYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKK 726
E L +++++ + E E K+I K
Sbjct: 120 EMLTIVASVYKMMGSMVT-LNEDEATPEMRVKKIFKL 155
Score = 37.1 bits (86), Expect = 0.009
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 639 FQIMDKERKGYVSINDIRRGLK------------NFGETISGEELHEILREIDSNMNGQV 686
F++ D GY++ +++ + N E + +I + +D N +G +
Sbjct: 105 FELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYI 164
Query: 687 ELDEYLQMMS 696
LDE+ +
Sbjct: 165 TLDEFREGSK 174
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 44.0 bits (104), Expect = 2e-04
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 460 ATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGP 511
A G + + I +D G V+GA L + T +E + +K V+ ATG
Sbjct: 110 AQDRGVEIWDLTTAMKPIFED-GYVKGAVLFNRRTNEELTVYSKVVVEATGY 160
Score = 42.1 bits (99), Expect = 6e-04
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
++DVLIIGGG GS A RGLK LV+
Sbjct: 5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVD 36
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 42.1 bits (99), Expect = 2e-04
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHE-ILREIDSNMNG 684
K+E+ Q+ K F G+++ ++ ++ K F E + D++ NG
Sbjct: 21 RFDKKELQQWYKGFFKDCPS--GHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNG 78
Query: 685 QVELDEYLQMMSAIKSG 701
++ E++ +S G
Sbjct: 79 YIDFKEFICALSVTSRG 95
Score = 36.3 bits (84), Expect = 0.015
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 639 FQIMDKERKGYVSINDIRRGLK------------NFGETISGEELHEILREIDSNMNGQV 686
FQ+ D + G +S +++ R + E + +++I +D N +GQ+
Sbjct: 105 FQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQL 164
Query: 687 ELDEYLQMMS 696
L+E+ +
Sbjct: 165 TLEEFCEGSK 174
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 43.1 bits (102), Expect = 2e-04
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
E +DVL++GGG GS A A GLKT ++E
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIE 34
Score = 40.4 bits (95), Expect = 0.002
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 460 ATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATGP 511
A + GA V +IK++ GKV GA +R + D++AK VI A G
Sbjct: 112 AAKAGADVWVKSPALGVIKEN-GKVAGAKIRH--NNEIVDVRAKMVIAADGF 160
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 41.9 bits (98), Expect = 3e-04
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEEL-HEILREIDSNMNG 684
N TK E+ + F+ G V+ ++ F H + D+ G
Sbjct: 47 NFTKRELQVLYRGFKNECP--SGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTG 104
Query: 685 QVELDEYLQMMSAIKSG 701
V+ ++++ +S + G
Sbjct: 105 SVKFEDFVTALSILLRG 121
Score = 35.3 bits (81), Expect = 0.041
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEE------------LHEILREIDSNMNGQV 686
F + D + GY++ ++ +K + + + +++D N +G V
Sbjct: 131 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 190
Query: 687 ELDEYLQMMS 696
LDE+L+
Sbjct: 191 TLDEFLESCQ 200
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 42.1 bits (99), Expect = 5e-04
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFAS---GTSSRSTKLIHGGVRYL 95
E+ DVL+IG G G+ A G K +VE F G S L+ + +L
Sbjct: 2 QREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGES-----LLPRCMEHL 56
Query: 96 QKA 98
+A
Sbjct: 57 DEA 59
Score = 35.9 bits (83), Expect = 0.044
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 460 ATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
A R G V V VT++ V + G + +++A+ +I+A+G
Sbjct: 116 AARQGVDVEYEVGVTDIKFFGTDSVTTIEDIN---GNKREIEARFIIDASG 163
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 42.1 bits (99), Expect = 5e-04
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 41 EEFDVLIIGGGATGSGCALD-AVTRGLKTALVELDD-FASGTSSRSTKLIHGGVRYL 95
FD +++G G G A V G +V+ SG S RS R
Sbjct: 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGDSGRSM----AAFRTF 74
Score = 40.5 bits (95), Expect = 0.002
Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 13/112 (11%)
Query: 420 SKKNALELFPMIRGDKLCGAIVYY--DGQQDDARMCLAIALTATRHGATVANHVRVTNL- 476
++ + E ++ + GA V G D ++ A+ G RV +
Sbjct: 150 TRVSDGEEAEVLGVGDVEGA-VLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVE 208
Query: 477 IKDDKGKVRGAHLRDELTGKEWDLK---------AKSVINATGPFTDSIRRM 519
+K + + ++ A G +++ +
Sbjct: 209 LKPRVELGIEGEPLPWQEARASAAVLSDGTRVEVGEKLVVAAGVWSNRLLNP 260
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 40.6 bits (95), Expect = 7e-04
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHE---------ILREIDSNMNGQVELD 689
F+I D + G ++ D+ R + L IL E D + +G + L
Sbjct: 135 FRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 194
Query: 690 EYLQMMS 696
E+ ++S
Sbjct: 195 EFQHVIS 201
Score = 39.5 bits (92), Expect = 0.002
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 24/136 (17%)
Query: 596 QEKQLKEASDFLANEMGQMVNRASRDKI-----PINLTKEEINQYIKRFQIMDKERKGYV 650
D MG +R S++ + LTK+EI +RF + +
Sbjct: 9 HHHHSSGHIDDDDKHMGGSGSRLSKELLAEYQDLTFLTKQEILLAHRRFCELLPQ--EQR 66
Query: 651 SINDIRRGLKNFGETISGEEL------HEILREIDSNM-NGQVELDEYLQMMSAIKSGHV 703
S+ R F + +S EL I R ++ + +++L ++
Sbjct: 67 SVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLL-------- 118
Query: 704 AYSRFAKMAEMEEEKH 719
S F+ A + + H
Sbjct: 119 --SVFSDTATPDIKSH 132
Score = 32.9 bits (75), Expect = 0.26
Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 609 NEMGQMVNRASRDKIPINLTKEEINQYIKR-FQIMDKERKGYVSINDIRRGLKN 661
++ ++VN + + L+ E+ Q I + D +R G +++++ + +
Sbjct: 149 EDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 202
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 41.7 bits (99), Expect = 7e-04
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
V +IG G AL AV +G + L+E
Sbjct: 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIE 34
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 41.4 bits (96), Expect = 0.001
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 14 AAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
AA Q + + PLP + ++ + ++DV+I+G G G A + V G K A+ +
Sbjct: 20 AAAQKASASSLPPLPGPDKKVPGMD--IKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
Score = 40.2 bits (93), Expect = 0.002
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 456 IALTATRHGATVANHVRVTNLIKD-DKGKVRGAHLRDELTGKEWDLKAKSVINATGPF 512
A + V ++++ ++ H+ D ++G +++KA + G
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAV 323
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 40.6 bits (96), Expect = 0.002
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
E+ DV+IIG GA G CA++A RG + +++
Sbjct: 24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVID 57
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/75 (16%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 628 TKEEINQYIKRFQIMDKER--KGYVSINDIRRGL-KNFGETISGEE-LHEILREIDSNMN 683
++ + F+ + +S ++++ + F + G L ++ +E+D N +
Sbjct: 2 AQKSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGD 61
Query: 684 GQVELDEYLQMMSAI 698
G+V +E+ ++ I
Sbjct: 62 GEVSFEEFQVLVKKI 76
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 40.5 bits (95), Expect = 0.002
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 20 PLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTR----GLKTALVE 72
K+ + D++ + E D+LIIGGG +G G A +A GLK LVE
Sbjct: 2 VYYPKKYELYKADEVPTEV--VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
Score = 34.8 bits (80), Expect = 0.11
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 450 ARMCLAIALTATRHGATVANHVRVTNLIKDD--KGKVRGAHLRDELTGKEWDLKAKSVIN 507
+ A A + V + L+KD+ V GA K + KAK+VI
Sbjct: 154 KPIIAEAAKMAVGE-ENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVIL 212
Query: 508 ATG 510
ATG
Sbjct: 213 ATG 215
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 40.3 bits (94), Expect = 0.002
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFAS---GTSSRSTKLIHGGVRYL 95
E FD+++IGGG GS A RG + L+E + F G S L+ V +
Sbjct: 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGES-----LLPATVHGI 58
Score = 37.2 bits (86), Expect = 0.020
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 460 ATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+ R G V V +++ + + G R+ G E A+ +++A+G
Sbjct: 121 SERKGVDVRERHEVIDVLFEG-ERAVGVRYRNT-EGVELMAHARFIVDASG 169
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 37.1 bits (86), Expect = 0.002
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 630 EEINQYIKRFQ--IMDKERKGYVSINDIRRGL-KNFGETISGEELHEILREIDSNMNGQV 686
+ +N I + + K V +D+++ L + I + +E+D N +G V
Sbjct: 7 KALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAV 66
Query: 687 ELDEYLQMMSAI 698
E+L ++ +
Sbjct: 67 NFQEFLILVIKM 78
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 38.6 bits (90), Expect = 0.003
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHE---------ILREIDSNMNGQVELD 689
F+I D + G ++ D+ R + L IL E D + +G + L
Sbjct: 104 FRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 163
Query: 690 EYLQMMS 696
E+ ++S
Sbjct: 164 EFQHVIS 170
Score = 38.6 bits (90), Expect = 0.003
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 626 NLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEEL------HEILREID 679
LTK+EI +RF + + S+ R F + +S EL I R
Sbjct: 13 FLTKQEILLAHRRFCELLPQ--EQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFS 70
Query: 680 SNM-NGQVELDEYLQMMSA 697
++ + +++L ++S
Sbjct: 71 TSPAKDSLSFEDFLDLLSV 89
Score = 32.0 bits (73), Expect = 0.34
Identities = 15/98 (15%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 632 INQYIKR-FQIMD-KERKGYVSINDIRRGLKNFGETISGEE-LHEILREIDSNMNGQVEL 688
N + +R ++ K +S D L F +T + + H R D + +G +
Sbjct: 58 ANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNR 117
Query: 689 DEYLQMMSAIKSGHVAYSRFAKMAEMEEEKHEKEILKK 726
++ ++++ + +++ E ++ IL++
Sbjct: 118 EDLSRLVNCL----TGEGEDTRLSASEMKQLIDNILEE 151
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 39.8 bits (94), Expect = 0.003
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ + +IIG GA G CA G + +
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFD 34
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 39.9 bits (94), Expect = 0.003
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 7 LGVKPVFAAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGL 66
+G + + P + + L ++D++IIGGG+ G A +A G
Sbjct: 1 MGSSHHHHHHSSGLV----PRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGK 56
Query: 67 KTALVELDDFASGTSS 82
K +++ +
Sbjct: 57 KVMVLDFVTPTPLGTR 72
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 39.5 bits (93), Expect = 0.003
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
DVLI G G G+ A +G + +VE
Sbjct: 5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVE 36
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 39.6 bits (93), Expect = 0.003
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80
E+D + IGGGA G + G + +V+ F G+
Sbjct: 42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS 81
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 39.4 bits (93), Expect = 0.004
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+DV++IGGG +G A+ A G L++
Sbjct: 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLD 56
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 39.4 bits (93), Expect = 0.004
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 36 SLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSR 83
+Q ++D+++IGGG+ G CA +AV G + A ++ ++
Sbjct: 3 PVQGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTK 50
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 39.2 bits (92), Expect = 0.004
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 459 TATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
++ T+ + +L+K+ G V G TG+ KA++ + ATG
Sbjct: 152 QNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATG 203
Score = 36.5 bits (85), Expect = 0.037
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALV 71
EFD ++IG G G AL G AL+
Sbjct: 7 EFDAVVIGAGGAGMRAALQISQSGQTCALL 36
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 39.1 bits (92), Expect = 0.005
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSS 82
+ FD+L+IGGG+ G CA +A G K A+ + + + +
Sbjct: 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTK 46
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 38.9 bits (91), Expect = 0.006
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGG 91
++D+++IGGG+ G +A G KTA+++ + + T GG
Sbjct: 107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVE----PTPIGTTWGLGG 152
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 38.4 bits (89), Expect = 0.008
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDF 76
V IIGGG GS L G + E F
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF 57
Score = 35.7 bits (82), Expect = 0.060
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 455 AIALTATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+ A G TV VT++ D +V R G+ +++ VI+A G
Sbjct: 133 LLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRG---GESVTVESDFVIDAGG 185
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 38.3 bits (90), Expect = 0.009
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
DV IIG G G G A K L+E
Sbjct: 7 INVDVAIIGTGTAGMGAYRAAKKHTDKVVLIE 38
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 37.8 bits (87), Expect = 0.010
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 31 EDQIKSLQSGEEFDVLIIGGGATGSGCA--LDAVTRGLKTALVELDDFASGTSSRSTKLI 88
L + E D++I+G G+ G A L + L+ +VE G + +L
Sbjct: 68 RRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLF 127
Query: 89 HGGVR 93
V
Sbjct: 128 SAMVM 132
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 38.0 bits (89), Expect = 0.010
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+D+++IGGG+ G A A K ALVE
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHNAKVALVE 32
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 37.9 bits (89), Expect = 0.011
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSS 82
++FDV++IG G G A+ + GLKTAL+E G ++
Sbjct: 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA 43
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 38.1 bits (89), Expect = 0.011
Identities = 7/77 (9%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 626 NLTKEEINQYIKR-FQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNG 684
+ + ++ I + + ++ I + L G + +G
Sbjct: 374 SRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGI---PRTAQSEETRVWHRRDG 430
Query: 685 QVELDEYLQMMSAIKSG 701
+ ++ +SG
Sbjct: 431 KWQIVH---FH---RSG 441
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 38.1 bits (89), Expect = 0.011
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 20 PLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASG 79
K P + + DV+++GGG G A + G+ ++E G
Sbjct: 27 DDDDKDPGRRMMHNSNADDAALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVG 86
Query: 80 TS 81
Sbjct: 87 HD 88
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 37.9 bits (89), Expect = 0.013
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80
+E DV+IIGGG G A+ A G KT +E GT
Sbjct: 3 GSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT 44
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 37.7 bits (86), Expect = 0.013
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 8 GVKPVFAAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCA--LDAVTRG 65
G +PV A P +R + + E FD+++IG G G+ CA L + G
Sbjct: 3 GPEPVPAGPPPDPTPPRR-AGSVWAHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQLAPG 61
Query: 66 LKTALVELDDFASGTSS 82
LVE + +
Sbjct: 62 RSLLLVEEGGLPNEEGA 78
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 37.5 bits (88), Expect = 0.014
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ DV+IIGGG G A+ A G TA VE
Sbjct: 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVE 35
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 37.7 bits (87), Expect = 0.016
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 24 KRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTA 69
+ P + + D+L++GGG G A +AV K A
Sbjct: 4 SKETPRGVAIAEPIIVEHSVDLLMVGGGMGNCGAAFEAVRWADKYA 49
Score = 36.1 bits (83), Expect = 0.045
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 454 LAIALTATRHGATVANHVRVTNLIKD--DKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+A A + + + L+ D ++ GA + + KA +++ A G
Sbjct: 172 VAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACG 230
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 37.1 bits (87), Expect = 0.017
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+D + IGGG+ G A G K AL+E
Sbjct: 4 HYDYIAIGGGSGGIASINRAAMYGQKCALIE 34
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 37.2 bits (87), Expect = 0.018
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ DVLI+G G TG RGL V+
Sbjct: 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVD 35
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 37.1 bits (87), Expect = 0.018
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 37 LQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80
QS +D+++IG G G CA+ A G+K A+VE GT
Sbjct: 20 FQSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGT 63
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 37.1 bits (87), Expect = 0.019
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+D L+IGGG+ G A A G + A+VE
Sbjct: 20 SYDYLVIGGGSGGLASARRAAELGARAAVVE 50
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 37.2 bits (86), Expect = 0.019
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRST 85
DVL++G G G A +A G + L++ + +G + T
Sbjct: 130 DVLVVGAGPAGLAAAREASRSGARVMLLD-ERAEAGGTLLDT 170
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 36.9 bits (86), Expect = 0.022
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 459 TATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+ G ++ + LI D GK GA +RD +TG AK + ATG
Sbjct: 167 ECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATG 217
Score = 36.9 bits (86), Expect = 0.024
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALV 71
D L+IGGG G A+ +GL T ++
Sbjct: 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVL 34
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus
thermophilus} PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 36.7 bits (86), Expect = 0.025
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ +D+++IG G G A+ A GLK VE
Sbjct: 5 KTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVE 36
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 36.8 bits (86), Expect = 0.027
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80
++DV++IG G G A + + G
Sbjct: 3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGN 42
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 36.7 bits (84), Expect = 0.028
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 34 IKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVR 93
Q + FD LI+G G GS A + G + +V+ G + G +
Sbjct: 21 TNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGN-AYDCYDDAGVLI 79
Query: 94 Y 94
+
Sbjct: 80 H 80
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 36.5 bits (85), Expect = 0.029
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALV 71
EFD +++G G G A G TA V
Sbjct: 18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACV 47
Score = 35.0 bits (81), Expect = 0.11
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 459 TATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+ R+ + +L+ ++ G+ RG G +AK+ + ATG
Sbjct: 164 RSLRYDTSYFVEYFALDLLMEN-GECRGVIALCIEDGTIHRFRAKNTVIATG 214
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 36.3 bits (85), Expect = 0.030
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
FD++ IGGG+ G A A G + AL+E
Sbjct: 4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIE 34
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 36.7 bits (84), Expect = 0.030
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 35 KSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
++L G+ L+IG G G+ AL G+ T +VE
Sbjct: 4 RTLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVE 41
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 36.4 bits (85), Expect = 0.030
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ +D+ IIGGG G A R ++E
Sbjct: 6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIE 37
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD;
2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 458
Score = 36.3 bits (85), Expect = 0.032
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 38 QSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
Q + +LIIGGG G A+ A G+ T LVE
Sbjct: 1 QQTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE 35
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 36.3 bits (85), Expect = 0.033
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+DV+++G G G A+ A GL TA+VE
Sbjct: 2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVE 33
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 36.2 bits (83), Expect = 0.037
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+G ++IG G + AL G++T ++E
Sbjct: 2 NGGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLE 35
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 33.8 bits (77), Expect = 0.040
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 639 FQIMDKERKGYVSINDIRRGLKNFGETISGEELHE----------------ILREIDSNM 682
F + D G + ++ E + + E +++ +D+N
Sbjct: 26 FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQ 85
Query: 683 NGQVELDEYLQMMSA 697
+ V L+E+L
Sbjct: 86 DRLVTLEEFLASTQR 100
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 36.0 bits (84), Expect = 0.041
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+D L+IGGG+ G A A + G KT LVE
Sbjct: 11 HYDYLVIGGGSGGVASARRAASYGAKTLLVE 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 36.1 bits (83), Expect = 0.042
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASG 79
DV IIGGG G G AL+ + L AL+E + G
Sbjct: 110 DVAIIGGGPAGIGAALELQ-QYLTVALIE-ERGWLG 143
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 33.2 bits (76), Expect = 0.048
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 638 RFQIMDKERKGYVSINDIRRGL-KNFGETISG----EELHEILREIDSNMNGQVELDEYL 692
++ K +S + R L K +S + ++++ +D+N +G++ DEY
Sbjct: 19 KYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYW 78
Query: 693 QMMSAI 698
++ I
Sbjct: 79 TLIGGI 84
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 36.0 bits (84), Expect = 0.050
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80
+ E+DV+++GGG G A A GLK A+VE G
Sbjct: 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV 44
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 35.9 bits (84), Expect = 0.050
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
E + L++G G G A+ A G K +VE
Sbjct: 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVE 33
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 35.5 bits (83), Expect = 0.051
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
++D+ +IGGG+ G A G K A+ E
Sbjct: 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAE 35
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 35.7 bits (83), Expect = 0.051
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 21 LRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ AK + ++L + +DVLI+G G G+ A+ + +G++T L+
Sbjct: 191 IVAKVDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMG 242
Score = 29.6 bits (67), Expect = 4.0
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 460 ATRHGATVANHVRVTNLIK-DDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+ + V + + L+ +G + G LKA+S+I ATG
Sbjct: 277 VSDYDVDVIDSQSASKLVPAATEGGLHQIETAS---GAV--LKARSIIIATG 323
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 35.3 bits (82), Expect = 0.059
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ D+ IIGGG TG A + ++E
Sbjct: 13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIE 44
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 35.6 bits (83), Expect = 0.060
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ DV +IG G G A+ A G KT +E
Sbjct: 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIE 36
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 35.1 bits (80), Expect = 0.060
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 31 EDQIKSLQSGEEFDVLIIGGGATGSGCALD-AVTRGLKTALVELDDFASGTSSRSTKLIH 89
+ + + E DV+++G G+ G A + + ++ A++E G + +L
Sbjct: 28 RRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFS 87
Query: 90 GGVR 93
+
Sbjct: 88 AMIV 91
Score = 29.3 bits (65), Expect = 4.8
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 451 RMCLAIALTATRHGATVANHVRVTNLIKDDKGKVRG---------AHLRDELTGKEWDLK 501
++ R + N V +LI +V G + + ++
Sbjct: 121 FTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCMDPNVME 179
Query: 502 AKSVINATG 510
AK V+++ G
Sbjct: 180 AKIVVSSCG 188
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 35.4 bits (82), Expect = 0.061
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81
E DVL++G G G A+ +G++ +VE S
Sbjct: 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYP 44
Score = 30.0 bits (68), Expect = 2.9
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 460 ATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
A +HG + R+ + + D G R E+DL+A ++ A G
Sbjct: 130 ARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADG 180
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 35.2 bits (80), Expect = 0.065
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSS 82
EE+DV+++G G T + G K ++ + + G SS
Sbjct: 5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESS 46
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 35.7 bits (82), Expect = 0.066
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 22 RAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALD-AVTRGLKTALVELDDFASGT 80
P +++ S + DVLI+G G G A A ++T +VE +
Sbjct: 14 LIAPASPLAPAHTEAVPS--QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMEL 71
Query: 81 S 81
Sbjct: 72 G 72
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 34.1 bits (78), Expect = 0.067
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 632 INQYIKRFQIMDKERKGYVSINDIRRGLKN----FGETISGEELHEILREIDSNMNGQVE 687
+ Y FQ + G + +D+ + ++N G IS EL ++ S+ G+V
Sbjct: 75 LVHYQHVFQKVQT-SPGVLLSSDLWKAIENTDFLRGIFIS-RELLHLVTLRYSDSVGRVS 132
Query: 688 LDEYLQMMSAIKSGHVAYSRFAKM 711
+ + +++ + +K
Sbjct: 133 FPSLVCFLMRLEAMAKTFRNLSKD 156
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 35.2 bits (80), Expect = 0.070
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 31 EDQIKSLQSGEEFDVLIIGGGATGSGCA--LDAVTRGLKTALVELDDFASGTSSRSTKLI 88
K L DV+I+G G++G A + LK ++E G S +L
Sbjct: 54 SRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLF 113
Query: 89 HGGV 92
V
Sbjct: 114 SAMV 117
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 35.2 bits (82), Expect = 0.071
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+DV++IGGG G ++ A G+KTA VE
Sbjct: 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVE 32
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide
dehydrogenase, 2-oxoglutarate dehydrogenase comple
pyruvate dehydrogenase complex; HET: FAD; 1.70A
{Thermus thermophilus} PDB: 2eq7_A*
Length = 455
Score = 35.2 bits (82), Expect = 0.071
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGT 80
+D+L+IG G G A+ A G+K +VE + GT
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGT 39
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 35.2 bits (82), Expect = 0.072
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+FD+ +IG G+ G A A G + A+ E
Sbjct: 26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAE 56
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 35.2 bits (82), Expect = 0.072
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 34 IKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ S + +FDV+I+G GA G A+ A G A+++
Sbjct: 8 VSSEEKERDFDVVIVGAGAAGFSAAVYAARSGFSVAILD 46
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 32.4 bits (74), Expect = 0.086
Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 632 INQYIKRFQIMDKERKGYVSINDIRRGL-KNFGETISG----EELHEILREIDSNMNGQV 686
+ + F + KGY++ D+R + K F + + +I++++D +G+V
Sbjct: 8 METMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKV 66
Query: 687 ELDEYLQMMSAI 698
+ +++ +
Sbjct: 67 GFQSFFSLIAGL 78
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 35.0 bits (81), Expect = 0.097
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 464 GATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+ V +++ DD G VRG + + G ++A +V+ ATG
Sbjct: 149 QIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATG 194
Score = 30.7 bits (70), Expect = 1.8
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRG--LKTALV 71
+ D+ I+G G G A+ A K AL+
Sbjct: 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALI 36
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A
{Streptomyces} PDB: 3gjb_A*
Length = 319
Score = 34.7 bits (79), Expect = 0.100
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 19/60 (31%)
Query: 621 DKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDS 680
++ + EE+ ++ ER GY+ I EE+ I
Sbjct: 6 EQANFTFSPEEVARF---------ERDGYIGPVKI----------FEPEEMTRRWNIIRR 46
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 34.6 bits (79), Expect = 0.10
Identities = 9/54 (16%), Positives = 22/54 (40%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRY 94
+ +LI+G G +G+ +G + +++ D G S + + +
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVH 55
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 34.1 bits (79), Expect = 0.10
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALV 71
+ VLI+G G +G+ A +G++ L+
Sbjct: 2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLL 32
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM;
2.6A {Gasterophilus intestinalis}
Length = 151
Score = 33.4 bits (76), Expect = 0.10
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 352 IIEIMAEELKWSKEEQEAAQKALPMIIEIMAEELKW 387
IIE++ +K ++++ A K +I E+
Sbjct: 114 IIEVVCSCVKLNEKQVHAYHKFFDRAYDIAFAEMAK 149
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 34.7 bits (80), Expect = 0.11
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
E DVLI+GGG G ALD R + +VE
Sbjct: 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVE 56
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 34.3 bits (79), Expect = 0.14
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVEL 73
V ++G G GS A + G+ L E+
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRLGVPVRLFEM 32
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 32.2 bits (73), Expect = 0.17
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 632 INQYIKRFQ--IMDKERKGYVSINDIRRGLKN-----FGETISGEELHEILREIDSNMNG 684
++ + F + K ++ ++++ L G+ +++ +DSN +
Sbjct: 21 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDN 80
Query: 685 QVELDEYLQMMSAI 698
+V+ EY +S I
Sbjct: 81 EVDFQEYCVFLSCI 94
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 31.7 bits (72), Expect = 0.18
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 632 INQYIKRFQ--IMDKERKGYVSINDIRRGLKN-----FGETISGEELHEILREIDSNMNG 684
++ + F + K ++ ++++ L G+ +++ +DSN +
Sbjct: 9 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDN 68
Query: 685 QVELDEYLQMMSAI 698
+V+ EY +S I
Sbjct: 69 EVDFQEYCVFLSCI 82
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 33.6 bits (75), Expect = 0.20
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRS 84
VLI+G G TGS CA + + + D A + R
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRM 43
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 33.7 bits (78), Expect = 0.20
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 41 EEFDVLIIGGGATGSGCA-LDAVTRGLKTALVELD 74
+ FD+++IG G+ G A G + A+V++
Sbjct: 6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQ 40
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin,
halogenase, biosynthetic protein; HET: DSU AKG; 1.60A
{Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A*
2fcv_A*
Length = 313
Score = 33.5 bits (76), Expect = 0.20
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 19/56 (33%)
Query: 624 PINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREID 679
LT E+ + E+ G++ D S EE+ E +
Sbjct: 7 KFALTAEQRASF---------EKNGFIGPFDA----------YSPEEMKETWKRTR 43
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 33.7 bits (78), Expect = 0.20
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 41 EEFDVLIIGGGATGSGCA-LDAVTRGLKTALVELDDFASGTSS 82
+D+++IG G+ G A + A+++L
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHY 44
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 31.4 bits (71), Expect = 0.21
Identities = 8/45 (17%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 655 IRRGLKNFGETISGE-ELHEILREIDSNMNGQVELDEYLQMMSAI 698
+++ L + T E + ++ + +D+N + +V+ EY++ ++ +
Sbjct: 38 LQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACL 82
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 31.4 bits (71), Expect = 0.25
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 632 INQYIKRFQ--IMDKERKGYVSINDIRRGLKN-----FGETISGEELHEILREIDSNMNG 684
++ + F + K ++ ++++ L G+ +++ +DSN +
Sbjct: 12 LDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDN 71
Query: 685 QVELDEYLQMMSAI 698
+V+ EY +S+I
Sbjct: 72 EVDFQEYCVFLSSI 85
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 33.7 bits (76), Expect = 0.26
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 43 FDVLIIGGGATGSGCALDAVTR-GLKTALVELDDFASGTSSRSTKLIHGGVRY 94
DVL+IG G TG G A G +V+ ++ G + ST + G Y
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLA--STDVTPEGFLY 61
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 33.0 bits (76), Expect = 0.32
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81
+ V+++G G G A + G+ ++E +G S
Sbjct: 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGES 51
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 33.3 bits (76), Expect = 0.33
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+D +++GGG +G A D G K L+E
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLE 31
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 30.9 bits (70), Expect = 0.34
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 669 EELHEILREIDSNMNGQVELDEYLQMMSAI 698
+ EI + +D+N + QV+ E++ +++
Sbjct: 55 AVIDEIFQGLDANQDEQVDFQEFISLVAIA 84
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 33.0 bits (76), Expect = 0.34
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 466 TVANHVRVTNLIKDDKG------KVRGAHLRDELTGKEWDLKAKSVINATG 510
V +LI DK +V GA + + AK+V+ ATG
Sbjct: 155 RVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATG 205
Score = 32.6 bits (75), Expect = 0.53
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGV 92
DVLIIG GA G AL + + ++ G ST GG+
Sbjct: 7 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEG----STFYAQGGI 53
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin,
heme hexacoordination, insect hemoglobin, protein
cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster}
PDB: 2g3h_A*
Length = 153
Score = 31.9 bits (72), Expect = 0.37
Identities = 3/35 (8%), Positives = 14/35 (40%)
Query: 352 IIEIMAEELKWSKEEQEAAQKALPMIIEIMAEELK 386
I++++ + + K + + I+ + +
Sbjct: 113 ILDVLTAASSLDESQAATWAKLVDHVYAIIFKAID 147
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 33.0 bits (74), Expect = 0.37
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSS 82
E +DV+I+G G + G K +++ + + G ++
Sbjct: 19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETA 60
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 33.0 bits (76), Expect = 0.39
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTS 81
+ V+++G G G A + G++ ++E +G S
Sbjct: 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGES 50
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 32.7 bits (73), Expect = 0.40
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGV 92
+ IIG G G A G + L + + G S+K G
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRM--SSKRSDAGA 50
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 32.5 bits (74), Expect = 0.49
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ V IIG GA G G A+ G+ ++
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIIL 34
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 30.6 bits (69), Expect = 0.51
Identities = 6/40 (15%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 660 KNFGETISGEE-LHEILREIDSNMNGQVELDEYLQMMSAI 698
+ + L E ++ +D N + +++ +EY +++ +
Sbjct: 52 QQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYWRLIGEL 91
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD;
1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 32.1 bits (74), Expect = 0.53
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+DVLI+G G G+ A+ + +G++T L+
Sbjct: 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMG 31
Score = 30.1 bits (69), Expect = 2.4
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 460 ATRHGATVANHVRVTNLIK-DDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+ V + + LI +G + G LKA+S+I ATG
Sbjct: 66 VDEYDVDVIDSQSASKLIPAAVEGGLHQIETAS---GAV--LKARSIIVATG 112
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 30.6 bits (69), Expect = 0.54
Identities = 11/75 (14%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 632 INQYIKRFQ--IMDKERKGYVSINDIRRGL-KNFGETISGE-----ELHEILREIDSNMN 683
I I F + ++ + + + K+ + E + I+ ++D+N +
Sbjct: 11 IETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNAD 70
Query: 684 GQVELDEYLQMMSAI 698
Q+ +E++ +M+ +
Sbjct: 71 KQLSFEEFIMLMARL 85
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A
{Lucina pectinata} PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A*
3pt7_A* 3pi2_A*
Length = 152
Score = 31.0 bits (70), Expect = 0.58
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 352 IIEIMAEELKWSKEEQEAAQKALPMIIEIMAEELK 386
+I M + ++A + + I + + + +K
Sbjct: 115 LIHYMEDHNHMVGGAKDAWEVFVGFICKTLGDYMK 149
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A
{Virgibacillus salexigens}
Length = 310
Score = 32.1 bits (73), Expect = 0.64
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 19/53 (35%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREID 679
+TKE+++ Y E+ G++ I + S +E+ ++ + I
Sbjct: 35 ITKEQLDSY---------EKNGFLQIKNF----------FSEDEVIDMQKAIF 68
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 30.1 bits (68), Expect = 0.66
Identities = 8/30 (26%), Positives = 23/30 (76%)
Query: 669 EELHEILREIDSNMNGQVELDEYLQMMSAI 698
+ + +I++E+D N +G+V+ E++ +++A+
Sbjct: 52 DAVDKIMKELDENGDGEVDFQEFVVLVAAL 81
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 30.1 bits (68), Expect = 0.67
Identities = 4/30 (13%), Positives = 17/30 (56%)
Query: 669 EELHEILREIDSNMNGQVELDEYLQMMSAI 698
+ ++++ +D N + +++ EY ++ +
Sbjct: 50 SSIDDLMKSLDKNSDQEIDFKEYSVFLTML 79
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 29.8 bits (67), Expect = 0.76
Identities = 8/30 (26%), Positives = 22/30 (73%)
Query: 669 EELHEILREIDSNMNGQVELDEYLQMMSAI 698
+ + ++L+++D+N + QV+ E++ ++AI
Sbjct: 52 DAVDKLLKDLDANGDAQVDFSEFIVFVAAI 81
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 32.0 bits (72), Expect = 0.78
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSS 82
V+++G G G AL +G ++ D SS
Sbjct: 8 RVVVLGSGVIGLSSALILARKGYSVHILA-RDLPEDVSS 45
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 29.8 bits (67), Expect = 0.82
Identities = 10/74 (13%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 632 INQYIKRFQ--IMDKERKGYVSINDIRRGL-KNFGETISG----EELHEILREIDSNMNG 684
+ I F + K + ++++ + + E + +++ +DSN +G
Sbjct: 8 VVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDG 67
Query: 685 QVELDEYLQMMSAI 698
+ + E++ ++ I
Sbjct: 68 ECDFQEFMAFVAMI 81
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 31.7 bits (73), Expect = 0.82
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 33 QIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ S++ GE+FDV+I+G G G AL + LKT ++
Sbjct: 6 RTTSVKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIG 45
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 31.6 bits (71), Expect = 0.87
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 43 FDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASG 79
+D +I+G G G+ CA + K ++E + G
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA,
GIDA; tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 32.0 bits (74), Expect = 0.88
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALV 71
+ FDV+IIGGG G+ A+ A G +T L+
Sbjct: 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLL 57
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded
beta-helix, structural GENO structural genomics
consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo
sapiens} SCOP: b.82.2.9
Length = 308
Score = 31.4 bits (71), Expect = 0.89
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 19/61 (31%)
Query: 627 LTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQV 686
LT E+ Y E G++ I ++ + ++ E + +V
Sbjct: 23 LTLEQRKFY---------EENGFLVIKNL----------VPDADIQRFRNEFEKICRKEV 63
Query: 687 E 687
+
Sbjct: 64 K 64
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 31.8 bits (72), Expect = 0.93
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 33 QIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
I+ +DV++IGGG G D G KT L+E
Sbjct: 30 NIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLE 69
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 31.7 bits (73), Expect = 0.98
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALV 71
+EFDV++IGGG G AL A G KTA+
Sbjct: 26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMF 56
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 29.4 bits (66), Expect = 1.1
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 655 IRRGLKNFGETISGEE-LHEILREIDSNMNGQVELDEYLQMMSAI 698
+ + L +F EE L +++ +D N + QV+ EY ++ I
Sbjct: 39 LHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLALI 83
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 31.4 bits (71), Expect = 1.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ DV+++GGG +G A GL ++E
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLE 34
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus}
PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A*
3qma_A* 1myt_A* 2nrm_A*
Length = 147
Score = 30.1 bits (67), Expect = 1.2
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 350 PMIIEIMAEELKWSKEEQEAAQKALPMIIEIMAEELK 386
+++++M E+ Q A + + +II + K
Sbjct: 105 EVLVKVMQEKAGLDAGGQTALRNVMGIIIADLEANYK 141
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 31.4 bits (70), Expect = 1.3
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRST 85
++DV+++G G T + G K ++ D G ++ T
Sbjct: 10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVT 54
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 31.2 bits (70), Expect = 1.4
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 36 SLQSGEEFDVLIIGGGATGSGCALD-----AVTRGLKTALVE 72
+ S DVLI+G G G A LK +++
Sbjct: 2 TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIID 43
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A
{Lucina pectinata} PDB: 3pt7_B*
Length = 152
Score = 30.3 bits (68), Expect = 1.4
Identities = 3/35 (8%), Positives = 13/35 (37%)
Query: 352 IIEIMAEELKWSKEEQEAAQKALPMIIEIMAEELK 386
++ + + + A + + I + + +K
Sbjct: 115 LLRYLEDHCHVEGSTKNAWEDFIAYICRVQGDFMK 149
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 31.0 bits (69), Expect = 1.4
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALV-ELDDFASGTSSRSTKLIHGGVRY 94
++IIG G TG G A+ G K + E +D G S + L G +
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLS--RSFLDENGFTW 60
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 29.0 bits (65), Expect = 1.4
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 632 INQYIKRFQ--IMDKERKGYVSINDIRRGL-KNFGETISG----EELHEILREIDSNMNG 684
I I FQ +S + + L +++++D + +G
Sbjct: 12 IESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDG 71
Query: 685 QVELDEYLQMMSAI 698
Q++ E+L ++ +
Sbjct: 72 QLDFQEFLNLIGGL 85
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 30.7 bits (70), Expect = 1.7
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD-----------DFASGTSSRSTKLIHGGVR 93
+ ++G A G A+ + + L + +D D G+ T I G
Sbjct: 24 ITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKD 83
Query: 94 Y 94
Y
Sbjct: 84 Y 84
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 31.0 bits (71), Expect = 1.8
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 39 SGEEFDVLIIGGGATGSGCAL------DAVTRGLKTALVELDDFASGTSSRSTKLIH--G 90
SG D +I GGG +G + + ++E + S +I
Sbjct: 16 SGRTVDYIIAGGGL--TGLTTAARLTENP---NISVLVIE----SGSYESDRGPIIEDLN 66
Query: 91 GVRYLQKAIMNLDIEQYRMVKEALHERSIR--RGDVL 125
+ + ++ Y V+ A + ++ G+ L
Sbjct: 67 AYGDIFGSSVDH---AYETVELATNNQTALIRSGNGL 100
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 28.6 bits (64), Expect = 2.0
Identities = 7/30 (23%), Positives = 22/30 (73%)
Query: 669 EELHEILREIDSNMNGQVELDEYLQMMSAI 698
+ +I+ ++DSN + +V+ +E++ +++A+
Sbjct: 53 MLVEKIMNDLDSNKDNEVDFNEFVVLVAAL 82
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 28.6 bits (64), Expect = 2.0
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 646 RKGYVSINDIRRGL-KNFGETISGEE------LHEILREIDSNMNGQVELDEYLQMMSAI 698
R + + + +NF +S + L ++ + D N + +++ E+L ++ I
Sbjct: 22 RDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLLGDI 81
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 30.5 bits (70), Expect = 2.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALV 71
+DV+++G G G AL GL L+
Sbjct: 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLI 50
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 28.2 bits (63), Expect = 2.2
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 669 EELHEILREIDSNMNGQVELDEYLQMMSAI 698
E+ ++ ++D N + +V EY+ + A+
Sbjct: 51 AEIARLMEDLDRNKDQEVNFQEYVTFLGAL 80
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 30.2 bits (69), Expect = 2.4
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ D +IG G G +L + AL +
Sbjct: 5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFD 36
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 30.2 bits (69), Expect = 2.5
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD-----------DFASGTSSRSTKLIHGG 91
V ++G G GS A V RG + LV +D D A + G
Sbjct: 3 VGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 30.4 bits (69), Expect = 2.5
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 30 REDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDD-------FASGTSS 82
E ++ L + ++ ++ ++G G G A++A RG + L + A
Sbjct: 361 HETKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPG 420
Query: 83 RSTKLIHGGVRYLQKAIMNLDIE 105
+ + + +RY ++ I +
Sbjct: 421 K--EEFYETLRYYRRMIEVTGVT 441
>2r6a_C DNAG primase, helicase binding domain, replicative helicase;
replication, DNAB; 2.90A {Geobacillus
stearothermophilus} PDB: 2r6c_G 1z8s_A*
Length = 143
Score = 29.0 bits (65), Expect = 2.6
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 605 DFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIMDKERKGYVSINDIRRGLKNFGE 664
+ E+ + + S I +++++E+ YI+ R ++ + +
Sbjct: 64 SRIPGELQPLASELSLLLIADDVSEQELEDYIRHV----LNRPKWLMLKVKEQEKTEAER 119
Query: 665 TISGEELHEILREI 678
I +E+
Sbjct: 120 RKDFLTAARIAKEM 133
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 29.9 bits (68), Expect = 2.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
+ ++GGG G C L +G+ LV LD
Sbjct: 17 ITVVGGGELGIACTLAISAKGIADRLVLLD 46
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET:
FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 30.2 bits (69), Expect = 2.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVEL 73
++I+GGG G AL A T +T V +
Sbjct: 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTV 33
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 30.3 bits (69), Expect = 2.8
Identities = 7/69 (10%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 45 VLIIGGGA--TGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIMNL 102
V++ G A +G + ++V S ++ + ++ +Q+ ++
Sbjct: 526 VVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVN-----RIQRRLIEN 580
Query: 103 DIEQYRMVK 111
+ +
Sbjct: 581 GVARVTDHA 589
Score = 29.9 bits (68), Expect = 3.5
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 462 RHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
+G V + G +RD E +L+ +V+ T
Sbjct: 579 ENGVARVTDHAVVA-VGAG-----GVTVRDTYASIERELECDAVVMVTA 621
>3t49_A SCIN-B, fibrinogen-binding protein; secreted, virulence, immune
system; HET: GOL; 1.45A {Staphylococcus aureus subsp}
PDB: 3t4a_G
Length = 73
Score = 27.5 bits (60), Expect = 3.3
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 663 GETISGEELHEILREIDSNMNGQVELDEYLQ---MMSAIKSGHVAYSR-FAKMAEMEEE 717
G T S EEL +L + + L+ Y + MM+ ++ F MA+ +
Sbjct: 1 GSTGSAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVA 59
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 29.8 bits (68), Expect = 3.3
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELDD 75
VL++G G G A D + G + +V +
Sbjct: 148 VLLLGAGLIGCEFANDLSSGGYQLDVVAPCE 178
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 13/41 (31%)
Query: 421 KKNALELFPMIRGDKLCGAIVYYDGQQDDARMCLAIALTAT 461
+K AL+ KL ++ Y D A A+A+ AT
Sbjct: 18 EKQALK--------KLQASLKLY--ADDSAP---ALAIKAT 45
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET:
NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 29.8 bits (68), Expect = 3.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
+ IIG G G+ A + +G+ V +D
Sbjct: 4 IGIIGLGNVGAAVAHGLIAQGVADDYVFID 33
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 29.8 bits (68), Expect = 3.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
V I+G G GS A G+ +V +D
Sbjct: 3 VGIVGSGMVGSATAYALALLGVAREVVLVD 32
>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A
{Enterobacteria phage RB49} PDB: 3c6h_A
Length = 232
Score = 29.6 bits (65), Expect = 3.6
Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 11/128 (8%)
Query: 342 VQAAQEALPMIIEIMAEELKWSKEEQEAAQKALPMIIEIMAEELKWSKEEQEIPYYWVGI 401
Q A + ++ + + K + E
Sbjct: 89 KQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNIICDS 148
Query: 402 KAYDFVAGSKTVKSSYYLSKKNALELFPMIRGDK-LCGAIVYY----------DGQQDDA 450
+ SK K+ + K+ +E +I K + + +G DD
Sbjct: 149 FIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRTFSEKGVSWAAEEGFHDDL 208
Query: 451 RMCLAIAL 458
M L I
Sbjct: 209 VMSLVIFG 216
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 29.8 bits (66), Expect = 3.6
Identities = 23/203 (11%), Positives = 55/203 (27%), Gaps = 27/203 (13%)
Query: 523 QVQKICVPSSGVHIVLPGYYSPDQMGLLDPSTSDGRVIFFLPWLKHTIAGTTDLPCDVTH 582
+V G ++++P + P + D +
Sbjct: 470 EVLNRFKLPPGEYVLVPSTFEPHK--NGDFCIRVFSEKKADYQTVDDEIEANIEEIEANE 527
Query: 583 HPKPTEDEIMFILQEKQLKEASDFLANEMGQMVNRASRDKIPINLTKEEINQYIKRFQIM 642
+F + E S A E+ ++ R + I I ++
Sbjct: 528 EDIGDGFRRLFAQLAGEDAEIS---AFELQTILRRVLAKREDIKSDGFSIETCKIMVDML 584
Query: 643 DKERKGYVSINDIRRGLKNFGE--------------TISGEELHEILREIDSNMNGQVEL 688
D++ G + + + + T++ E+ + L E + Q+
Sbjct: 585 DEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQL-- 642
Query: 689 DEYLQMMS---AIKSGHVAYSRF 708
Q++ A + + F
Sbjct: 643 ---HQVIVARFADDELIIDFDNF 662
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 29.9 bits (66), Expect = 3.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 32 DQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASG 79
+IK L + + V+IIG G +G A + G+ L+E D G
Sbjct: 268 KRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 29.4 bits (67), Expect = 4.0
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 42 EFDVLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHG 90
+FDV+IIGG G AL R K L+ +D +R HG
Sbjct: 2 KFDVIIIGGSYAGLSAALQLG-RARKNILL-VDAGERR--NRFASHSHG 46
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 29.4 bits (67), Expect = 4.1
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD-----------DFASGTSSRSTKLIHGGVR 93
+ +IG GA GS A A RG+ +V D D G+S T I G
Sbjct: 10 LAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD 69
Query: 94 Y 94
Sbjct: 70 P 70
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor
complex, fragment-based LEAD genera inhibitors; HET:
52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A*
4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A*
4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A*
1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Length = 331
Score = 29.4 bits (67), Expect = 4.5
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD-----------DFASGTS-SRSTKLIHGG 91
+ ++G GA G CA+ + + L L +D D G+ ++ K++
Sbjct: 22 ITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSK 80
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 29.4 bits (67), Expect = 4.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
V+++G GA GS A +G+ V +D
Sbjct: 8 VVLVGDGAVGSSYAFAMAQQGIAEEFVIVD 37
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 29.4 bits (67), Expect = 4.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
V +IG G GS A + +G+ LV +D
Sbjct: 8 VALIGAGFVGSSYAFALINQGITDELVVID 37
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability;
HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 29.0 bits (66), Expect = 4.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
+ I+G G GS A + +G +V +D
Sbjct: 3 IGIVGLGRVGSSTAFALLMKGFAREMVLID 32
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 29.0 bits (66), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
V+++G GA GS A V +G+ + +D
Sbjct: 12 VILVGDGAVGSSYAYAMVLQGIAQEIGIVD 41
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 29.3 bits (66), Expect = 4.9
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 1 MSEDG----PLGVKPVFAAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSG 56
+ + G PL + E+ ++ + P+ +D + VL++G G G
Sbjct: 142 IEDIGILAQPLAD-IEKSIEEILEVQKRVPVWTCDDGTLN---CR--KVLVVGTGPIGVL 195
Query: 57 CALDAVTRGL-KTALVELDDF 76
L T GL +
Sbjct: 196 FTLLFRTYGLEVWMANRREPT 216
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 29.0 bits (66), Expect = 4.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
V++IG GA GS A V + + LV +D
Sbjct: 9 VVLIGNGAVGSSYAFSLVNQSIVDELVIID 38
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 29.0 bits (66), Expect = 5.1
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
V++IG G G+ + +G+ +V +D
Sbjct: 9 VVVIGAGFVGASYVFALMNQGIADEIVLID 38
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 29.3 bits (65), Expect = 5.2
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 32 DQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+ Q+ L++G G G A++ G + LVE
Sbjct: 82 PVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLVE 122
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 29.4 bits (65), Expect = 5.2
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 24/80 (30%)
Query: 632 INQYIKRFQIMDKERKGYVSINDIRRGLKNFGETISGEELHEILREIDSNMNGQVELDEY 691
I ++ ++ + +R G TI EL ++N +
Sbjct: 803 IKKWQGIYKRFETDRSG----------------TIGSNELPGAFEAAGFHLNQHI----- 841
Query: 692 LQMMS---AIKSGHVAYSRF 708
M+ + ++G++ + F
Sbjct: 842 YSMIIRRYSDETGNMDFDNF 861
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 29.2 bits (66), Expect = 5.4
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVE-LDDFASGTSSRSTKLIHGGVRYLQKA 98
V IIG G +G G+ ++E R+ L G V L++A
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA 59
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 29.2 bits (65), Expect = 5.7
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 298 WPIIGKKIHPEFPYIDAEIRYGVREYARTAIDMVARRLRLAFLNVQAAQEALPMIIEIMA 357
+ G K+ E+R +R++A + ++ L L AQ M E +
Sbjct: 164 YFDRGDKVDVAADVFANEVRILLRDHAPGLRRLAVDKVMLHGLRALQAQGFEIMDGEEVT 223
Query: 358 EELKWSKEEQE---------AAQKALPMIIEIMAEELKWSK-EEQEI 394
E+ + K E A + A+ + + ++ E +I
Sbjct: 224 EKARSVKGPDEIRAMRCASHACEVAVRKMEDFARSKVGDGVTCENDI 270
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 29.3 bits (66), Expect = 5.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKTALVE 72
DV I+G G +G A GL A++E
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIE 35
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A
{Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A*
3pga_1
Length = 337
Score = 29.1 bits (66), Expect = 5.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 207 TIAG-----GKWTTYRAMASESIDALIEAVPELK 235
TIAG TY+A A +D LI VPEL
Sbjct: 20 TIAGAGASAANSATYQA-AKVGVDKLIAGVPELA 52
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase;
HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 29.0 bits (66), Expect = 5.8
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD---DFASG 79
+ +G G GS A + + +D D A G
Sbjct: 3 LGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG 40
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 29.0 bits (66), Expect = 5.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELD 74
V IIG G G+ A R LV +D
Sbjct: 10 VAIIGAGFVGASAAFTMALRQTANELVLID 39
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap
binding site, hydrolase-DNA complex, DNA repair,
replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A*
3q8m_A*
Length = 341
Score = 29.0 bits (65), Expect = 6.2
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 308 EFPYIDAEIRYGVREYARTAIDMVARRLRLAFLNVQAAQEALPMIIEIMAEELKWSKEEQ 367
+ I+ +R + + + FL P +++ + ELKWS+ +
Sbjct: 251 KHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLE--------PEVLDPESVELKWSEPNE 302
Query: 368 EAAQKALPMIIEIMAEELKWSKE 390
E +I+ M E ++S+E
Sbjct: 303 EE-------LIKFMCGEKQFSEE 318
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni
subsp}
Length = 334
Score = 28.7 bits (65), Expect = 6.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 207 TIAG-----GKWTTYRAMASESIDALIEAVPELK 235
TIAG T Y A + ID LI+AVP+++
Sbjct: 19 TIAGFIDSTIATTGYAA-GAIDIDVLIKAVPQIR 51
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 29.0 bits (64), Expect = 6.8
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 39 SGEEFDVLIIGGGATGSGCALDAVTRGLKTALV 71
S + V+IIG G G A G++ LV
Sbjct: 5 SPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLV 37
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 28.8 bits (64), Expect = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+V ++GGG +G A +RG L+E
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLE 46
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 28.8 bits (64), Expect = 7.2
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 320 VREYARTAIDMVARRLRLAFLNVQAAQEALPMIIEIMAEELKWSKEEQEAAQKALPMIIE 379
++ A + + + +N A + LP + + E KW +E+ A A +++
Sbjct: 111 IQSVASETLISI-----VNAVNPVAIKALLPHLTNAIVETNKW--QEKIAILAAFSAMVD 163
Query: 380 IMAEEL 385
+++
Sbjct: 164 AAKDQV 169
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA
binding domain, RNA recognition motif, SP factor, snRNP,
spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP:
d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Length = 292
Score = 28.4 bits (64), Expect = 7.3
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 628 TKEEINQYIKRFQIMDKERKGYVSINDIRRG-LKNFGETISGEELHEILREIDSNMNGQV 686
+ I + + + + VS + NF + + + ++L++I V
Sbjct: 90 RYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDI-----NVV 144
Query: 687 ELDEYLQMMSAIKSGHVAYSRFAKMAEME---EEKHEKEILKKQISVERS 733
L L + S AY + E+ + +I + + S
Sbjct: 145 ALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 28.8 bits (65), Expect = 7.5
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 13 FAAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
F+ + + +IK V IIGGG GSG A + L E
Sbjct: 291 FSQRGTAKVPGVTDRGLVPRKIKK--------VAIIGGGLMGSGIATALILSNYPVILKE 342
Query: 73 LD-DFASGTSSRSTKLIHGGVR 93
++ F R + VR
Sbjct: 343 VNEKFLEAGIGRVKANLQSRVR 364
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 28.7 bits (65), Expect = 7.7
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
+DV+++G G G ++GL E
Sbjct: 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFE 51
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 28.5 bits (63), Expect = 7.7
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTAL-----VELDDFASGTSS 82
V++IG G G AL R V D F T++
Sbjct: 3 VVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTT 45
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 28.7 bits (65), Expect = 8.0
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 36 SLQSGEEFDVLIIGGGATGSGCAL 59
S +G+ +D +I GGG +G +
Sbjct: 18 SKVAGKTYDYIIAGGGL--TGLTV 39
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 27.9 bits (63), Expect = 8.1
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 460 ATRHGATVANHVRVTNLIKDDKGKVRGAHLRDELTGKEWDLKAKSVINATG 510
A R+GA V V + + +E KA+ ++ T
Sbjct: 66 ARRYGAEVR-PGVVKGVRDMGGVFE--------VETEEGVEKAERLLLCTH 107
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 28.5 bits (63), Expect = 8.3
Identities = 4/41 (9%), Positives = 14/41 (34%)
Query: 14 AAEQASPLRAKRPLPPREDQIKSLQSGEEFDVLIIGGGATG 54
+ + +P ++ + D++ +G G +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMTQATATAVVHDLIGVGFGPSN 42
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen
storage/transport complex; HET: HEM; 1.64A
{Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A*
3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Length = 152
Score = 27.6 bits (61), Expect = 8.5
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 352 IIEIMAEELKWSKEEQEAAQKALPMIIEIMAEEL 385
+ ++ + + A K + + E L
Sbjct: 111 LRGVIYDSMHLDSTHGAAWNKMMDNFFYVFYECL 144
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 28.7 bits (65), Expect = 8.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTRGLKTALVE 72
D ++IG G TG A G+K +E
Sbjct: 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIE 39
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 28.6 bits (65), Expect = 8.7
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 36 SLQSGEEFDVLIIGGGATGSGCAL 59
++ D++I+GGG+ +G L
Sbjct: 11 KVEHAPNCDIVIVGGGS--AGSLL 32
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 28.3 bits (64), Expect = 8.9
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 22/76 (28%)
Query: 45 VLIIGGGATGSGCALDAVTRGLKTALVELDDFASGTSSRSTKLIHGGVRYLQKAIMNLDI 104
+IIGGG G A + G L+ + LD
Sbjct: 146 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM----------------------FLGLDE 183
Query: 105 EQYRMVKEALHERSIR 120
E M+K+ L E ++
Sbjct: 184 ELSNMIKDMLEETGVK 199
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 28.6 bits (63), Expect = 9.2
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 41 EEFDVLIIGGGATGSGCALDAVTR-GLKTALVELDDFASG 79
FD+ ++G G G A T+ + ++E G
Sbjct: 6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG 45
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta
motif, structural genomics, PSI, protein structure
initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Length = 207
Score = 27.9 bits (63), Expect = 9.5
Identities = 2/19 (10%), Positives = 8/19 (42%)
Query: 626 NLTKEEINQYIKRFQIMDK 644
+ + + ++R M+
Sbjct: 149 KFGDDIVERTLERGACMNS 167
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 28.3 bits (63), Expect = 10.0
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 44 DVLIIGGGATGSGCALDAVTRGLKT-ALVELDDFASG 79
+ IIG G G + G ++E D G
Sbjct: 8 RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,883,913
Number of extensions: 780028
Number of successful extensions: 3685
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3339
Number of HSP's successfully gapped: 518
Length of query: 737
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 636
Effective length of database: 3,881,772
Effective search space: 2468806992
Effective search space used: 2468806992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)