BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8271
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N5Z5|KCD17_HUMAN BTB/POZ domain-containing protein KCTD17 OS=Homo sapiens GN=KCTD17
PE=1 SV=3
Length = 321
Score = 88.6 bits (218), Expect = 9e-18, Method: Composition-based stats.
Identities = 40/62 (64%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
+EAEFYNI L+R+IKDR+ +D +V KHVYRV+QC E+ELTQMVSTMSDGW+FE
Sbjct: 110 EEAEFYNIGPLIRIIKDRMEEKD-YTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFE 168
Query: 64 QV 65
Q+
Sbjct: 169 QL 170
>sp|Q8VC57|KCTD5_MOUSE BTB/POZ domain-containing protein KCTD5 OS=Mus musculus GN=Kctd5
PE=2 SV=1
Length = 234
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/62 (66%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
+EAEFYNI L++L+KD+I RDS + KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct: 124 EEAEFYNITSLIKLVKDKIRERDS-RISQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182
Query: 64 QV 65
Q+
Sbjct: 183 QL 184
>sp|Q14681|KCTD2_HUMAN BTB/POZ domain-containing protein KCTD2 OS=Homo sapiens GN=KCTD2
PE=1 SV=3
Length = 263
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/63 (68%), Positives = 51/63 (80%), Gaps = 3/63 (4%)
Query: 4 QEAEFYNIAELVRLIKDRICTRDSLS-VKDANKKHVYRVIQCHEDELTQMVSTMSDGWKF 62
+EAEFYNIA LVRL+K+RI RD+ + KHVYRV+QC E+ELTQMVSTMSDGWKF
Sbjct: 153 EEAEFYNIASLVRLVKERI--RDNENRTSQGPVKHVYRVLQCQEEELTQMVSTMSDGWKF 210
Query: 63 EQV 65
EQ+
Sbjct: 211 EQL 213
>sp|Q9NXV2|KCTD5_HUMAN BTB/POZ domain-containing protein KCTD5 OS=Homo sapiens GN=KCTD5
PE=1 SV=1
Length = 234
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
+EAEFYNI L++L+KD+I RDS KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct: 124 EEAEFYNITSLIKLVKDKIRERDS-KTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182
Query: 64 QV 65
Q+
Sbjct: 183 QL 184
>sp|A5PKG7|KCTD5_BOVIN BTB/POZ domain-containing protein KCTD5 OS=Bos taurus GN=KCTD5 PE=2
SV=1
Length = 234
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
+EAEFYNI L++L+KD+I RDS KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct: 124 EEAEFYNITSLIKLVKDKIRERDS-KTSQVPLKHVYRVLQCQEEELTQMVSTMSDGWKFE 182
Query: 64 QV 65
Q+
Sbjct: 183 QL 184
>sp|B5DEL1|KCTD5_RAT BTB/POZ domain-containing protein KCTD5 OS=Rattus norvegicus
GN=Kctd5 PE=2 SV=1
Length = 234
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/62 (66%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 4 QEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFE 63
+EAEFYNI L++L+KD+I RDS KHVYRV+QC E+ELTQMVSTMSDGWKFE
Sbjct: 124 EEAEFYNITSLIKLVKDKIRERDS-KTSQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 182
Query: 64 QV 65
Q+
Sbjct: 183 QL 184
>sp|Q8CEZ0|KCTD2_MOUSE BTB/POZ domain-containing protein KCTD2 OS=Mus musculus GN=Kctd2
PE=2 SV=1
Length = 266
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 49/61 (80%), Gaps = 3/61 (4%)
Query: 6 AEFYNIAELVRLIKDRICTRDSLS-VKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFEQ 64
AEFYNIA LVRL+K+RI RD+ + KHVYRV+QC E+ELTQMVSTMSDGWKFEQ
Sbjct: 154 AEFYNIASLVRLVKERI--RDNENRTSQGPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQ 211
Query: 65 V 65
+
Sbjct: 212 L 212
>sp|Q15652|JHD2C_HUMAN Probable JmjC domain-containing histone demethylation protein 2C
OS=Homo sapiens GN=JMJD1C PE=1 SV=2
Length = 2540
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 7 EFYNIAELVRLIKDRICTRDSLSVKDA---NKKHVYRVIQCHEDELTQM 52
E +++ + +RL+K+ I D L VK+ K + R ++ HEDE+ M
Sbjct: 2489 ESFHLTQELRLLKEEINYDDKLQVKNILYHAVKEMVRALKIHEDEVEDM 2537
>sp|Q69ZK6|JHD2C_MOUSE Probable JmjC domain-containing histone demethylation protein 2C
OS=Mus musculus GN=Jmjd1c PE=1 SV=3
Length = 2350
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 9 YNIAELVRLIKDRICTRDSLSVKDA---NKKHVYRVIQCHEDELTQMVST 55
+++ + +RL+K+ I D L VK+ K + R ++ HEDE+ M T
Sbjct: 2301 FHLTQELRLLKEEINYDDKLQVKNILYHAVKEMVRALKMHEDEVEDMEDT 2350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,436,517
Number of Sequences: 539616
Number of extensions: 570974
Number of successful extensions: 1609
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1595
Number of HSP's gapped (non-prelim): 9
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)