Query psy8271
Match_columns 65
No_of_seqs 37 out of 39
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 23:09:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2715|consensus 100.0 1.7E-36 3.8E-41 218.5 1.0 63 2-65 98-160 (210)
2 KOG2716|consensus 95.9 0.0038 8.2E-08 45.8 1.3 25 2-26 81-105 (230)
3 KOG1665|consensus 78.9 0.77 1.7E-05 35.4 0.5 19 2-20 87-105 (302)
4 PF14695 LINES_C: Lines C-term 76.9 1.8 3.9E-05 24.6 1.5 11 9-19 24-34 (39)
5 KOG2723|consensus 59.9 2.4 5.3E-05 31.1 -0.4 19 2-20 86-104 (221)
6 PF00651 BTB: BTB/POZ domain; 57.7 6.2 0.00013 22.9 1.1 22 3-24 88-109 (111)
7 PF09103 BRCA-2_OB1: BRCA2, ol 53.7 6.3 0.00014 26.0 0.8 38 20-61 4-44 (118)
8 KOG2714|consensus 49.0 7.7 0.00017 31.7 0.7 14 3-16 89-102 (465)
9 PF01466 Skp1: Skp1 family, di 46.8 11 0.00024 22.5 1.0 23 3-25 20-42 (78)
10 PF11791 Aconitase_B_N: Aconit 35.9 17 0.00037 25.7 0.8 12 9-20 94-105 (154)
11 PF07539 DRIM: Down-regulated 35.9 18 0.00038 24.3 0.8 47 11-57 90-138 (141)
12 PF03965 Penicillinase_R: Peni 32.3 96 0.0021 19.2 3.7 39 14-52 37-75 (115)
13 PF14703 DUF4463: Domain of un 29.3 47 0.001 19.2 1.8 14 9-22 3-16 (85)
14 KOG0887|consensus 25.3 24 0.00052 24.1 0.0 7 4-10 43-49 (111)
15 PF10678 DUF2492: Protein of u 25.0 41 0.00088 21.3 1.0 22 1-22 12-33 (78)
16 PHA03098 kelch-like protein; P 22.9 46 0.00099 25.2 1.1 23 3-25 82-104 (534)
17 KOG0972|consensus 21.4 30 0.00065 27.7 -0.1 39 14-52 316-354 (384)
18 PF01329 Pterin_4a: Pterin 4 a 21.3 67 0.0015 19.8 1.5 18 45-63 6-23 (95)
19 PF10498 IFT57: Intra-flagella 21.2 38 0.00083 26.2 0.4 43 10-52 305-347 (359)
20 PF00558 Vpu: Vpu protein; In 21.1 61 0.0013 20.7 1.3 13 46-58 62-74 (81)
21 KOG0212|consensus 21.0 24 0.00051 30.2 -0.8 29 1-29 155-183 (675)
22 PF13783 DUF4177: Domain of un 20.8 30 0.00065 19.6 -0.2 9 56-64 30-38 (61)
23 cd04751 Commd3 COMM_Domain con 20.8 46 0.001 20.8 0.7 20 40-59 67-86 (95)
24 PF07097 DUF1359: Protein of u 20.7 52 0.0011 22.1 0.9 17 9-25 70-86 (102)
25 PF14135 DUF4302: Domain of un 20.6 46 0.001 23.5 0.7 18 46-63 18-35 (235)
26 COG0799 Uncharacterized homolo 20.6 39 0.00086 22.6 0.4 13 4-16 93-105 (115)
27 PF09974 DUF2209: Uncharacteri 20.2 35 0.00077 23.6 0.1 12 2-13 73-84 (128)
28 PHA00692 hypothetical protein 20.1 39 0.00084 21.4 0.2 18 48-65 57-74 (74)
No 1
>KOG2715|consensus
Probab=100.00 E-value=1.7e-36 Score=218.48 Aligned_cols=63 Identities=62% Similarity=0.994 Sum_probs=61.8
Q ss_pred ccccccccChHHHHHHHHHhhhhhccccccccCCCceeeeeccchhHHHhhhhhcCCCcccccC
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFEQV 65 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~erd~~~~q~~~~k~VyRVLqc~e~eLt~mvStmSdgWkfeQL 65 (65)
|||||||||+++||+||||||++||++++|. +.|||||||||||+|||||+|||||||||+||
T Consensus 98 vL~EAefyn~~~li~likd~i~dRd~~~tq~-~~k~vyrvLqcqeeeltqmvStmsDgw~~~ql 160 (210)
T KOG2715|consen 98 VLEEAEFYNDPSLIQLIKDRIQDRDAMVTQE-ADKFVYRVLQCQEEELTQMVSTMSDGWKIEQL 160 (210)
T ss_pred cchhhhccCChHHHHHHHHHHHHHhhhcccc-chhHHHHHHHHHHHHHHHHHhhccccHhHHHH
Confidence 7999999999999999999999999999999 99999999999999999999999999999996
No 2
>KOG2716|consensus
Probab=95.88 E-value=0.0038 Score=45.83 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.5
Q ss_pred ccccccccChHHHHHHHHHhhhhhc
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTRD 26 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~erd 26 (65)
++.||+||.+..||.+|+.+|....
T Consensus 81 l~~EA~fYlL~~Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 81 LLREAEFYLLDGLVELCQSAIARLI 105 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhcc
Confidence 5789999999999999999987664
No 3
>KOG1665|consensus
Probab=78.94 E-value=0.77 Score=35.43 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=17.7
Q ss_pred ccccccccChHHHHHHHHH
Q psy8271 2 YTQEAEFYNIAELVRLIKD 20 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likd 20 (65)
|||||.||-|-+|+.-++|
T Consensus 87 vLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 87 VLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHhhHHhhHhHHhHHhh
Confidence 7999999999999988888
No 4
>PF14695 LINES_C: Lines C-terminus
Probab=76.91 E-value=1.8 Score=24.55 Aligned_cols=11 Identities=45% Similarity=0.851 Sum_probs=10.1
Q ss_pred cChHHHHHHHH
Q psy8271 9 YNIAELVRLIK 19 (65)
Q Consensus 9 YNI~~LI~lik 19 (65)
||+++|+++++
T Consensus 24 YN~~pLLrlL~ 34 (39)
T PF14695_consen 24 YNPSPLLRLLE 34 (39)
T ss_pred CChHHHHHHHH
Confidence 99999999876
No 5
>KOG2723|consensus
Probab=59.88 E-value=2.4 Score=31.12 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=14.2
Q ss_pred ccccccccChHHHHHHHHH
Q psy8271 2 YTQEAEFYNIAELVRLIKD 20 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likd 20 (65)
+.+||+||+|+.+......
T Consensus 86 L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 86 LVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHHHHHccccHHHHHhc
Confidence 4689999999966665443
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=57.74 E-value=6.2 Score=22.92 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.0
Q ss_pred cccccccChHHHHHHHHHhhhh
Q psy8271 3 TQEAEFYNIAELVRLIKDRICT 24 (65)
Q Consensus 3 LEEAEFYNI~~LI~likdri~e 24 (65)
|+=|++|+|+.|++.|.+.|.+
T Consensus 88 l~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 88 LELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHh
Confidence 5568999999999999998854
No 7
>PF09103 BRCA-2_OB1: BRCA2, oligonucleotide/oligosaccharide-binding, domain 1; InterPro: IPR015187 This domain assumes an OB fold, which consists of a highly curved five-stranded beta-sheet that closes on itself to form a beta-barrel. OB1 has a shallow groove formed by one face of the curved sheet and is demarcated by two loops, one between beta 1 and beta 2 and another between beta 4 and beta 5, which allows for weak single strand DNA binding. The domain also binds the 70-amino acid DSS1 (deleted in split-hand/split foot syndrome) protein, which was originally identified as one of three genes that map to a 1.5-Mb locus deleted in an inherited developmental malformation syndrome []. ; GO: 0000724 double-strand break repair via homologous recombination; PDB: 1IYJ_D 1MIU_A.
Probab=53.65 E-value=6.3 Score=26.00 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=17.5
Q ss_pred HhhhhhccccccccCCCceeeeecc---chhHHHhhhhhcCCCcc
Q psy8271 20 DRICTRDSLSVKDANKKHVYRVIQC---HEDELTQMVSTMSDGWK 61 (65)
Q Consensus 20 dri~erd~~~~q~~~~k~VyRVLqc---~e~eLt~mvStmSdgWk 61 (65)
.||.|+|...+.. -|.-|..= ....-....=.+||||=
T Consensus 4 rrI~E~D~~~~~~----mVL~Vs~i~~~~~~~~~~~~lelTDGWY 44 (118)
T PF09103_consen 4 RRILEGDDSASKP----MVLCVSSISSSDNDSPESAILELTDGWY 44 (118)
T ss_dssp HHHHTTSSTTB-S----EEEEEEE-------------EEEE-SS-
T ss_pred HHHhhCCCCcCCc----EEEEEEEEccCCCCCCccCEEEEecCCE
Confidence 5899999775443 35555553 22222334446889995
No 8
>KOG2714|consensus
Probab=49.00 E-value=7.7 Score=31.72 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=12.6
Q ss_pred cccccccChHHHHH
Q psy8271 3 TQEAEFYNIAELVR 16 (65)
Q Consensus 3 LEEAEFYNI~~LI~ 16 (65)
..||+||-|+||++
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 35999999999998
No 9
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=46.80 E-value=11 Score=22.48 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=18.1
Q ss_pred cccccccChHHHHHHHHHhhhhh
Q psy8271 3 TQEAEFYNIAELVRLIKDRICTR 25 (65)
Q Consensus 3 LEEAEFYNI~~LI~likdri~er 25 (65)
+.-|.|.||.+|+.++-..|..+
T Consensus 20 ~~AA~yL~I~~L~~~~~~~iA~~ 42 (78)
T PF01466_consen 20 LNAANYLDIKGLLDLCCKYIANM 42 (78)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHHHHHHH
Confidence 56689999999999998777554
No 10
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=35.93 E-value=17 Score=25.75 Aligned_cols=12 Identities=42% Similarity=0.869 Sum_probs=9.8
Q ss_pred cChHHHHHHHHH
Q psy8271 9 YNIAELVRLIKD 20 (65)
Q Consensus 9 YNI~~LI~likd 20 (65)
|||.+||.+++.
T Consensus 94 YNV~~LI~~L~~ 105 (154)
T PF11791_consen 94 YNVQPLIDLLKS 105 (154)
T ss_dssp TTHHHHHHGG--
T ss_pred CcHHHHHHHHcC
Confidence 999999999943
No 11
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=35.92 E-value=18 Score=24.34 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhhhhhccccccc-cCCCceeeee-ccchhHHHhhhhhcC
Q psy8271 11 IAELVRLIKDRICTRDSLSVKD-ANKKHVYRVI-QCHEDELTQMVSTMS 57 (65)
Q Consensus 11 I~~LI~likdri~erd~~~~q~-~~~k~VyRVL-qc~e~eLt~mvStmS 57 (65)
|+=+++++--||..|-.+.++. +-++-|.|.| +|+++|+...++-|.
T Consensus 90 ~pvvlRILygk~~~~~~~~~~~~~rR~aIL~~L~~l~~~El~~Fl~l~~ 138 (141)
T PF07539_consen 90 MPVVLRILYGKMQSRKGSGSKKASRRAAILRFLAGLSEEELGLFLDLML 138 (141)
T ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 5668999999998887654443 2456688887 789999998877553
No 12
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=32.25 E-value=96 Score=19.20 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhhccccccccCCCceeeeeccchhHHHhh
Q psy8271 14 LVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQM 52 (65)
Q Consensus 14 LI~likdri~erd~~~~q~~~~k~VyRVLqc~e~eLt~m 52 (65)
=|+-+-.|+.++..-..+...+.++|+++.-+++=+.+.
T Consensus 37 Tv~t~L~rL~~Kg~l~~~~~gr~~~Y~p~is~~e~~~~~ 75 (115)
T PF03965_consen 37 TVQTLLNRLVEKGFLTREKIGRAYVYSPLISREEYLAQE 75 (115)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTCEEEEESSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCceeEeecCCceEEEeCCcHHHHHHHH
Confidence 355566677777653222214779999998877744433
No 13
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=29.33 E-value=47 Score=19.23 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=11.6
Q ss_pred cChHHHHHHHHHhh
Q psy8271 9 YNIAELVRLIKDRI 22 (65)
Q Consensus 9 YNI~~LI~likdri 22 (65)
||...|.+|+++|-
T Consensus 3 rd~~~L~~Lv~~R~ 16 (85)
T PF14703_consen 3 RDWSKLEKLVEERE 16 (85)
T ss_pred CCHHHHHHHHHHHH
Confidence 78889999988874
No 14
>KOG0887|consensus
Probab=25.29 E-value=24 Score=24.06 Aligned_cols=7 Identities=57% Similarity=0.937 Sum_probs=5.4
Q ss_pred ccccccC
Q psy8271 4 QEAEFYN 10 (65)
Q Consensus 4 EEAEFYN 10 (65)
|||+||-
T Consensus 43 eEa~fYl 49 (111)
T KOG0887|consen 43 EEASFYL 49 (111)
T ss_pred hhhheee
Confidence 6888883
No 15
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=25.02 E-value=41 Score=21.30 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.5
Q ss_pred CccccccccChHHHHHHHHHhh
Q psy8271 1 MYTQEAEFYNIAELVRLIKDRI 22 (65)
Q Consensus 1 ~VLEEAEFYNI~~LI~likdri 22 (65)
|.++..+-|+..+|++.|.++-
T Consensus 12 mmi~~~~~~t~~~L~~ai~~~F 33 (78)
T PF10678_consen 12 MMIESGNPYTKEELKAAIIEKF 33 (78)
T ss_pred HHHHcCCCcCHHHHHHHHHHHh
Confidence 3456778999999999999887
No 16
>PHA03098 kelch-like protein; Provisional
Probab=22.93 E-value=46 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=15.7
Q ss_pred cccccccChHHHHHHHHHhhhhh
Q psy8271 3 TQEAEFYNIAELVRLIKDRICTR 25 (65)
Q Consensus 3 LEEAEFYNI~~LI~likdri~er 25 (65)
|+=|.||.|+.|+++|.+.+...
T Consensus 82 l~~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 82 LSIANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh
Confidence 55677777777777777776543
No 17
>KOG0972|consensus
Probab=21.42 E-value=30 Score=27.71 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhhccccccccCCCceeeeeccchhHHHhh
Q psy8271 14 LVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQM 52 (65)
Q Consensus 14 LI~likdri~erd~~~~q~~~~k~VyRVLqc~e~eLt~m 52 (65)
=|..+|.-|++|.++.|.+||...+-..+..-++|+.+|
T Consensus 316 e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~m 354 (384)
T KOG0972|consen 316 EIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTM 354 (384)
T ss_pred HHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhh
Confidence 366788888888888888866544444455555555544
No 18
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=21.33 E-value=67 Score=19.78 Aligned_cols=18 Identities=28% Similarity=0.883 Sum_probs=14.5
Q ss_pred chhHHHhhhhhcCCCcccc
Q psy8271 45 HEDELTQMVSTMSDGWKFE 63 (65)
Q Consensus 45 ~e~eLt~mvStmSdgWkfe 63 (65)
.++|+...+..+ +||+..
T Consensus 6 s~~ei~~~L~~l-~~W~~~ 23 (95)
T PF01329_consen 6 SEEEIAEALAEL-PGWKLD 23 (95)
T ss_dssp THHHHHHHHHTS-TTSEEE
T ss_pred CHHHHHHhhhcC-cCCEEC
Confidence 478888888888 899864
No 19
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.21 E-value=38 Score=26.17 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCceeeeeccchhHHHhh
Q psy8271 10 NIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQM 52 (65)
Q Consensus 10 NI~~LI~likdri~erd~~~~q~~~~k~VyRVLqc~e~eLt~m 52 (65)
.|+.-+..+|..|.||.++.|-++|...+=..|+-=..|+.+|
T Consensus 305 ~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 305 EISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4777788899999999999888866555555555555666555
No 20
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=21.13 E-value=61 Score=20.69 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=7.9
Q ss_pred hhHHHhhhhhcCC
Q psy8271 46 EDELTQMVSTMSD 58 (65)
Q Consensus 46 e~eLt~mvStmSd 58 (65)
|++|.+++..|..
T Consensus 62 EeeL~~Lv~~~G~ 74 (81)
T PF00558_consen 62 EEELSALVESMGF 74 (81)
T ss_dssp HH-CHCCHH-GCC
T ss_pred HHHHHHHHHHcCC
Confidence 5558888886653
No 21
>KOG0212|consensus
Probab=20.96 E-value=24 Score=30.19 Aligned_cols=29 Identities=21% Similarity=0.552 Sum_probs=23.4
Q ss_pred CccccccccChHHHHHHHHHhhhhhcccc
Q psy8271 1 MYTQEAEFYNIAELVRLIKDRICTRDSLS 29 (65)
Q Consensus 1 ~VLEEAEFYNI~~LI~likdri~erd~~~ 29 (65)
.|.|+|.=++|+.+|.+++|||-.-+..+
T Consensus 155 IVte~~~tFsL~~~ipLL~eriy~~n~~t 183 (675)
T KOG0212|consen 155 IVTESASTFSLPEFIPLLRERIYVINPMT 183 (675)
T ss_pred hccccccccCHHHHHHHHHHHHhcCCchH
Confidence 37888867799999999999997665443
No 22
>PF13783 DUF4177: Domain of unknown function (DUF4177)
Probab=20.81 E-value=30 Score=19.59 Aligned_cols=9 Identities=22% Similarity=0.800 Sum_probs=6.8
Q ss_pred cCCCccccc
Q psy8271 56 MSDGWKFEQ 64 (65)
Q Consensus 56 mSdgWkfeQ 64 (65)
-+|||.+.+
T Consensus 30 g~eGWeLV~ 38 (61)
T PF13783_consen 30 GKEGWELVS 38 (61)
T ss_pred HhCCcEEEE
Confidence 369999865
No 23
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=20.80 E-value=46 Score=20.79 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=16.9
Q ss_pred eeeccchhHHHhhhhhcCCC
Q psy8271 40 RVIQCHEDELTQMVSTMSDG 59 (65)
Q Consensus 40 RVLqc~e~eLt~mvStmSdg 59 (65)
-+++|..++|..|+..+-|.
T Consensus 67 i~f~c~~e~L~~Li~~Lk~A 86 (95)
T cd04751 67 INFTCTLEQLQDLVNKLKDA 86 (95)
T ss_pred EEEEeCHHHHHHHHHHHHHH
Confidence 67899999999999877653
No 24
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=20.67 E-value=52 Score=22.08 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.5
Q ss_pred cChHHHHHHHHHhhhhh
Q psy8271 9 YNIAELVRLIKDRICTR 25 (65)
Q Consensus 9 YNI~~LI~likdri~er 25 (65)
-|++.||.|+++.|++.
T Consensus 70 I~VGTLI~LL~~NIE~N 86 (102)
T PF07097_consen 70 INVGTLIPLLEQNIEDN 86 (102)
T ss_pred cchhhhhHHHHhccccc
Confidence 47899999999999654
No 25
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=20.64 E-value=46 Score=23.49 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=14.5
Q ss_pred hhHHHhhhhhcCCCcccc
Q psy8271 46 EDELTQMVSTMSDGWKFE 63 (65)
Q Consensus 46 e~eLt~mvStmSdgWkfe 63 (65)
-+++.+++....+||+++
T Consensus 18 ~~~~k~~L~~a~~GW~~~ 35 (235)
T PF14135_consen 18 LAEYKKILTSAPNGWKLE 35 (235)
T ss_pred HHHHHHHHhcCCCceEEE
Confidence 457778888999999964
No 26
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=20.57 E-value=39 Score=22.61 Aligned_cols=13 Identities=46% Similarity=0.802 Sum_probs=10.0
Q ss_pred ccccccChHHHHH
Q psy8271 4 QEAEFYNIAELVR 16 (65)
Q Consensus 4 EEAEFYNI~~LI~ 16 (65)
|+-||||+..|-+
T Consensus 93 e~R~~Y~LEklW~ 105 (115)
T COG0799 93 EEREFYNLEKLWG 105 (115)
T ss_pred HHHHHccHHHHhc
Confidence 5679999987743
No 27
>PF09974 DUF2209: Uncharacterized protein conserved in archaea (DUF2209); InterPro: IPR014514 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.18 E-value=35 Score=23.64 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=9.7
Q ss_pred ccccccccChHH
Q psy8271 2 YTQEAEFYNIAE 13 (65)
Q Consensus 2 VLEEAEFYNI~~ 13 (65)
|-|..||||.+.
T Consensus 73 vaE~Gefyn~p~ 84 (128)
T PF09974_consen 73 VAEKGEFYNEPE 84 (128)
T ss_pred EeeccccccChH
Confidence 467789999885
No 28
>PHA00692 hypothetical protein
Probab=20.07 E-value=39 Score=21.37 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=13.8
Q ss_pred HHHhhhhhcCCCcccccC
Q psy8271 48 ELTQMVSTMSDGWKFEQV 65 (65)
Q Consensus 48 eLt~mvStmSdgWkfeQL 65 (65)
-|.-++.-|...||=|||
T Consensus 57 aldvlltrmeqhwkdeql 74 (74)
T PHA00692 57 ALDVLLTRMEQHWKDEQL 74 (74)
T ss_pred HHHHHHHHHHHhhccccC
Confidence 355567778889999987
Done!