Query psy8271
Match_columns 65
No_of_seqs 37 out of 39
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 23:09:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drx_A BTB/POZ domain-containi 100.0 6.3E-33 2.1E-37 195.8 2.6 63 2-65 90-152 (202)
2 3drz_A BTB/POZ domain-containi 98.3 9.6E-08 3.3E-12 59.4 0.9 24 2-25 84-107 (107)
3 1s1g_A Potassium voltage-gated 88.1 0.079 2.7E-06 33.8 -0.4 24 2-25 87-112 (124)
4 1t1d_A Protein (potassium chan 87.7 0.076 2.6E-06 32.8 -0.6 14 2-15 77-90 (100)
5 3m5b_A Zinc finger and BTB dom 85.0 0.25 8.6E-06 30.0 0.7 25 2-26 95-119 (119)
6 3kvt_A Potassium channel prote 84.6 0.088 3E-06 33.2 -1.5 14 2-15 80-93 (115)
7 2nz0_B Potassium voltage-gated 80.8 0.14 4.7E-06 33.5 -1.8 14 2-15 109-122 (140)
8 1nn7_A Potassium channel KV4.2 79.7 0.16 5.6E-06 31.2 -1.6 14 2-15 74-87 (105)
9 1r29_A B-cell lymphoma 6 prote 77.5 0.8 2.7E-05 27.1 1.1 24 2-25 103-126 (127)
10 2vkp_A BTB/POZ domain-containi 74.5 1.1 3.9E-05 25.5 1.1 23 2-24 85-107 (109)
11 2vpk_A Myoneurin; transcriptio 71.6 1.3 4.5E-05 25.8 0.9 22 2-23 94-115 (116)
12 3b84_A Zinc finger and BTB dom 66.8 1.4 4.9E-05 26.0 0.4 24 2-25 94-117 (119)
13 2if5_A Zinc finger and BTB dom 65.2 2.1 7.3E-05 24.9 0.9 21 2-22 99-119 (120)
14 2yy9_A Zinc finger and BTB dom 63.6 1.7 5.9E-05 26.3 0.3 25 2-26 95-119 (135)
15 1buo_A POZ domain, protein (pr 60.7 2.8 9.7E-05 24.7 0.9 23 2-24 97-119 (121)
16 2z8h_A Transcription regulator 55.2 2.4 8.3E-05 25.6 -0.1 24 2-25 109-132 (138)
17 2r9r_B Paddle chimera voltage 51.8 2.4 8.1E-05 32.0 -0.6 14 2-15 128-141 (514)
18 3htm_A Speckle-type POZ protei 51.3 5.7 0.00019 24.1 1.2 24 2-25 108-131 (172)
19 2ppi_A Gigaxonin; BTB domain, 49.3 4 0.00014 25.1 0.2 21 2-22 123-143 (144)
20 4eoz_A Speckle-type POZ protei 48.4 3.8 0.00013 24.2 0.0 24 2-25 99-122 (145)
21 2q81_A MIZ-1 protein; BTB/POZ 48.2 6.5 0.00022 23.1 1.0 22 2-23 96-117 (119)
22 3hqi_A Speckle-type POZ protei 41.1 9.7 0.00033 25.6 1.2 24 2-25 248-271 (312)
23 3hve_A Gigaxonin; ubiquitin, c 31.4 16 0.00054 23.8 1.0 22 3-24 108-129 (256)
24 3i3n_A Kelch-like protein 11; 27.9 21 0.00072 23.6 1.1 22 3-24 116-137 (279)
25 2kjs_A Putative acyl carrier p 23.2 54 0.0018 18.9 2.2 20 7-26 61-80 (87)
26 2l3y_A Interleukin-6; cytokine 22.4 47 0.0016 22.9 2.1 25 8-32 122-146 (190)
27 2id1_A Hypothetical protein; a 22.3 20 0.00067 23.3 0.1 12 4-15 93-104 (130)
28 1i1r_B Viral IL-6; cytokine/re 21.5 51 0.0017 22.6 2.1 25 8-32 103-127 (181)
No 1
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=99.97 E-value=6.3e-33 Score=195.75 Aligned_cols=63 Identities=65% Similarity=1.036 Sum_probs=61.2
Q ss_pred ccccccccChHHHHHHHHHhhhhhccccccccCCCceeeeeccchhHHHhhhhhcCCCcccccC
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHEDELTQMVSTMSDGWKFEQV 65 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~erd~~~~q~~~~k~VyRVLqc~e~eLt~mvStmSdgWkfeQL 65 (65)
+++||+||+|++|+++|++||++|+.+.+|+ ++|||||||||||+||||||||||||||||||
T Consensus 90 l~eEA~FygL~~Lv~~l~~~i~ere~~~~~~-~~k~v~~v~qc~~~el~~~~s~~~d~~~~~~~ 152 (202)
T 3drx_A 90 VLEEAEFYNITSLIKLVKDKIRERDSKTSQV-PVKHVYRVLQCQEEELTQMVSTMSDGWKFEQL 152 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHCCC-SCCCEEEEEEECSTHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHHhcccccC-CCcceeeeeeCCHHHHHHHHHhhccccChhhe
Confidence 4799999999999999999999999999998 99999999999999999999999999999996
No 2
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.33 E-value=9.6e-08 Score=59.36 Aligned_cols=24 Identities=54% Similarity=0.919 Sum_probs=22.7
Q ss_pred ccccccccChHHHHHHHHHhhhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTR 25 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~er 25 (65)
+++||+||+|++|+++|++||+||
T Consensus 84 l~~Ea~fy~l~~L~~~l~~~i~~~ 107 (107)
T 3drz_A 84 VLEEAEFYNITSLIKLVKDKIRER 107 (107)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcC
Confidence 579999999999999999999987
No 3
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=88.07 E-value=0.079 Score=33.85 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=16.6
Q ss_pred ccccccccChHHHH--HHHHHhhhhh
Q psy8271 2 YTQEAEFYNIAELV--RLIKDRICTR 25 (65)
Q Consensus 2 VLEEAEFYNI~~LI--~likdri~er 25 (65)
+++||+||.|++|+ .-|.++.+++
T Consensus 87 l~~Ea~fy~i~~l~l~~cC~~~~~~~ 112 (124)
T 1s1g_A 87 YDDELAFYGILPEIIGDCCYEEYKDR 112 (124)
T ss_dssp HHHHHHHTTCCGGGBCHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 47999999999984 3344444433
No 4
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=87.73 E-value=0.076 Score=32.81 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=12.2
Q ss_pred ccccccccChHHHH
Q psy8271 2 YTQEAEFYNIAELV 15 (65)
Q Consensus 2 VLEEAEFYNI~~LI 15 (65)
+++||+||.|++++
T Consensus 77 ~~~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 77 FSEEIKFYELGENA 90 (100)
T ss_dssp HHHHHHHTTCCHHH
T ss_pred HHHHHHHcCCCHHH
Confidence 47999999999865
No 5
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=84.98 E-value=0.25 Score=30.00 Aligned_cols=25 Identities=12% Similarity=0.023 Sum_probs=19.1
Q ss_pred ccccccccChHHHHHHHHHhhhhhc
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTRD 26 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~erd 26 (65)
+|+-|++|.|..|.+.|.+.+++|+
T Consensus 95 ll~aA~~l~i~~l~~~C~~~~~~~~ 119 (119)
T 3m5b_A 95 LQEAARALGVQSLEEACWRARGDRA 119 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcC
Confidence 4677999999999999999998774
No 6
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=84.60 E-value=0.088 Score=33.18 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=12.2
Q ss_pred ccccccccChHHHH
Q psy8271 2 YTQEAEFYNIAELV 15 (65)
Q Consensus 2 VLEEAEFYNI~~LI 15 (65)
+++||+||+|+++.
T Consensus 80 ~~~Ea~fy~i~~~~ 93 (115)
T 3kvt_A 80 FEEELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHHHHTCCGGG
T ss_pred HHHHHHHhCCChHH
Confidence 57999999999974
No 7
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=80.76 E-value=0.14 Score=33.46 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=12.4
Q ss_pred ccccccccChHHHH
Q psy8271 2 YTQEAEFYNIAELV 15 (65)
Q Consensus 2 VLEEAEFYNI~~LI 15 (65)
+++||+||.|++|+
T Consensus 109 l~eEa~fy~i~~l~ 122 (140)
T 2nz0_B 109 YDDELAFYGILPEI 122 (140)
T ss_dssp HHHHHHHHTCCGGG
T ss_pred HHHHHHHcCCChHH
Confidence 47999999999985
No 8
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=79.68 E-value=0.16 Score=31.21 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=12.2
Q ss_pred ccccccccChHHHH
Q psy8271 2 YTQEAEFYNIAELV 15 (65)
Q Consensus 2 VLEEAEFYNI~~LI 15 (65)
+++||+||.|++++
T Consensus 74 l~~Ea~fy~i~~l~ 87 (105)
T 1nn7_A 74 YDEELAFFGLIPEI 87 (105)
T ss_dssp HHHHHHHHTCCSCC
T ss_pred HHHHHHHcCCCHHH
Confidence 47899999999984
No 9
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=77.54 E-value=0.8 Score=27.15 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=20.8
Q ss_pred ccccccccChHHHHHHHHHhhhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTR 25 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~er 25 (65)
+|+-|++|.|+.|.+.|.+-|.++
T Consensus 103 ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 103 VMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 467799999999999999988654
No 10
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=74.53 E-value=1.1 Score=25.55 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=19.7
Q ss_pred ccccccccChHHHHHHHHHhhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICT 24 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~e 24 (65)
+|.-|++|+++.|.+.|.+.|.+
T Consensus 85 ll~~A~~~~~~~L~~~c~~~l~~ 107 (109)
T 2vkp_A 85 TLYAAKKYIVPALAKACVNFLET 107 (109)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHh
Confidence 36679999999999999998854
No 11
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=71.64 E-value=1.3 Score=25.81 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.1
Q ss_pred ccccccccChHHHHHHHHHhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRIC 23 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~ 23 (65)
+|+-|++|.|+.|.+.|.+.|.
T Consensus 94 ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 94 IHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 4677999999999999998774
No 12
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=66.83 E-value=1.4 Score=26.00 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=18.8
Q ss_pred ccccccccChHHHHHHHHHhhhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTR 25 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~er 25 (65)
+|+-|++|.|+.|.+.|.+-+.++
T Consensus 94 ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 94 VLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHCC---
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHc
Confidence 467799999999999999988543
No 13
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=65.20 E-value=2.1 Score=24.93 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=18.2
Q ss_pred ccccccccChHHHHHHHHHhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRI 22 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri 22 (65)
+|+-|++|.|+.|.+.|.+.+
T Consensus 99 ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 99 ILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHh
Confidence 466799999999999998876
No 14
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=63.62 E-value=1.7 Score=26.34 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=19.7
Q ss_pred ccccccccChHHHHHHHHHhhhhhc
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTRD 26 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~erd 26 (65)
+|.-|++|.|..|.+.|.+-+.++-
T Consensus 95 ll~~A~~l~i~~L~~~C~~~l~~~l 119 (135)
T 2yy9_A 95 VLLAAKELRVPEAVELCQSFQPQTS 119 (135)
T ss_dssp HHHHHHHTTCHHHHHHHHHCCC---
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 4667999999999999999986653
No 15
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=60.70 E-value=2.8 Score=24.65 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=19.5
Q ss_pred ccccccccChHHHHHHHHHhhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICT 24 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~e 24 (65)
+|+-|++|.|+.|.+.|.+.+.+
T Consensus 97 ll~~A~~~~i~~L~~~c~~~l~~ 119 (121)
T 1buo_A 97 LLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHH
Confidence 46679999999999999988753
No 16
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=55.16 E-value=2.4 Score=25.59 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=20.6
Q ss_pred ccccccccChHHHHHHHHHhhhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTR 25 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~er 25 (65)
+|+-|++|.|..|++.|.+-|..+
T Consensus 109 ll~~A~~~~i~~L~~~C~~~l~~~ 132 (138)
T 2z8h_A 109 VCRCVEFLSVHNIEESCFQFLKFK 132 (138)
T ss_dssp HHHHHHHHTCGGGHHHHHHHTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 467799999999999999998654
No 17
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=51.84 E-value=2.4 Score=31.96 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=12.1
Q ss_pred ccccccccChHHHH
Q psy8271 2 YTQEAEFYNIAELV 15 (65)
Q Consensus 2 VLEEAEFYNI~~LI 15 (65)
+++||+||.|+++.
T Consensus 128 ~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 128 FSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHTTCCHHH
T ss_pred HHHHHHhcCCCHHH
Confidence 47999999999875
No 18
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=51.27 E-value=5.7 Score=24.06 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=20.4
Q ss_pred ccccccccChHHHHHHHHHhhhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTR 25 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~er 25 (65)
+|+-|++|.|+.|.+.|.+.|.+.
T Consensus 108 ll~~A~~~~~~~l~~~c~~~l~~~ 131 (172)
T 3htm_A 108 LLAAADKYALERLKVMCEDALCSN 131 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh
Confidence 467799999999999999998754
No 19
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=49.25 E-value=4 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.7
Q ss_pred ccccccccChHHHHHHHHHhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRI 22 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri 22 (65)
+|.-|++|.|+.|.+.|.+-|
T Consensus 123 ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 123 VVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp HHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHhCcHHHHHHHHHHh
Confidence 467799999999999998755
No 20
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=48.44 E-value=3.8 Score=24.17 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=18.0
Q ss_pred ccccccccChHHHHHHHHHhhhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTR 25 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~er 25 (65)
+|+-|++|.|+.|.+.|.+.|.+.
T Consensus 99 ll~~A~~~~~~~l~~~c~~~l~~~ 122 (145)
T 4eoz_A 99 LLAAADKYALERLKVMCEDALCSN 122 (145)
T ss_dssp HHHHHHHTTCHHHHHHHHCC----
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHh
Confidence 467799999999999999988643
No 21
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=48.24 E-value=6.5 Score=23.06 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=18.4
Q ss_pred ccccccccChHHHHHHHHHhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRIC 23 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~ 23 (65)
+|.-|++|.|++|.+.|.+-|.
T Consensus 96 ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 96 VLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 4667999999999999987663
No 22
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=41.10 E-value=9.7 Score=25.56 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=20.9
Q ss_pred ccccccccChHHHHHHHHHhhhhh
Q psy8271 2 YTQEAEFYNIAELVRLIKDRICTR 25 (65)
Q Consensus 2 VLEEAEFYNI~~LI~likdri~er 25 (65)
+|+-|++|.+..|+++|.+.+.+.
T Consensus 248 ll~~A~~~~~~~l~~~c~~~l~~~ 271 (312)
T 3hqi_A 248 LLAAADKYALERLKVMCEDALCSN 271 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCHHHHHHHHHHHHHcc
Confidence 467799999999999999999754
No 23
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=31.38 E-value=16 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=14.4
Q ss_pred cccccccChHHHHHHHHHhhhh
Q psy8271 3 TQEAEFYNIAELVRLIKDRICT 24 (65)
Q Consensus 3 LEEAEFYNI~~LI~likdri~e 24 (65)
|+-|.+|.|+.|++.|.+-+.+
T Consensus 108 l~~A~~l~i~~l~~~c~~~L~~ 129 (256)
T 3hve_A 108 VQAADLLLLTDLKTLCCEFLEG 129 (256)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHChHHHHHHHHHHHHh
Confidence 4556677777777777666654
No 24
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=27.91 E-value=21 Score=23.62 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=13.7
Q ss_pred cccccccChHHHHHHHHHhhhh
Q psy8271 3 TQEAEFYNIAELVRLIKDRICT 24 (65)
Q Consensus 3 LEEAEFYNI~~LI~likdri~e 24 (65)
|+-|.+|.|+.|++.|.+-+.+
T Consensus 116 l~~A~~l~i~~L~~~c~~~L~~ 137 (279)
T 3i3n_A 116 LELADRFLLIRLKEFCGEFLKK 137 (279)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcHHHHHHHHHHHHH
Confidence 4456666666666666666644
No 25
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=23.25 E-value=54 Score=18.91 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=16.1
Q ss_pred cccChHHHHHHHHHhhhhhc
Q psy8271 7 EFYNIAELVRLIKDRICTRD 26 (65)
Q Consensus 7 EFYNI~~LI~likdri~erd 26 (65)
++-+++.|+.+|..|+.+|-
T Consensus 61 ~~~TV~dl~~~I~~kl~~k~ 80 (87)
T 2kjs_A 61 KLKNVGDLADLVDKKLARKL 80 (87)
T ss_dssp TCCSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 45678899999999997763
No 26
>2l3y_A Interleukin-6; cytokine, signaling, GP-130, transcription; NMR {Mus musculus}
Probab=22.44 E-value=47 Score=22.95 Aligned_cols=25 Identities=4% Similarity=0.166 Sum_probs=20.1
Q ss_pred ccChHHHHHHHHHhhhhhccccccc
Q psy8271 8 FYNIAELVRLIKDRICTRDSLSVKD 32 (65)
Q Consensus 8 FYNI~~LI~likdri~erd~~~~q~ 32 (65)
-|++.-||+.||++|++.+..++..
T Consensus 122 q~~t~~L~~~i~q~~k~~~~v~~~~ 146 (190)
T 2l3y_A 122 QRDTETLIHIFNQEVKDLHKIVLPT 146 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCC
Confidence 3688999999999999988664443
No 27
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=22.29 E-value=20 Score=23.27 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=10.0
Q ss_pred ccccccChHHHH
Q psy8271 4 QEAEFYNIAELV 15 (65)
Q Consensus 4 EEAEFYNI~~LI 15 (65)
|+-+|||+..|-
T Consensus 93 e~RefY~LE~LW 104 (130)
T 2id1_A 93 AVRDYYDIEALW 104 (130)
T ss_dssp HHHHHHCHHHHT
T ss_pred HHHhHcCHHHHh
Confidence 567999999887
No 28
>1i1r_B Viral IL-6; cytokine/receptor complex, GP130; 2.40A {Human herpesvirus 8} SCOP: a.26.1.1
Probab=21.48 E-value=51 Score=22.58 Aligned_cols=25 Identities=8% Similarity=-0.110 Sum_probs=20.2
Q ss_pred ccChHHHHHHHHHhhhhhccccccc
Q psy8271 8 FYNIAELVRLIKDRICTRDSLSVKD 32 (65)
Q Consensus 8 FYNI~~LI~likdri~erd~~~~q~ 32 (65)
-|++..||+.|++.|++.+..++..
T Consensus 103 q~~t~~L~~~i~q~~k~~~~~~~~~ 127 (181)
T 1i1r_B 103 ELLTKTLGWDIQEELNKLTKTHYSP 127 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred HHHHHHHHHHHHHHHhCcCceeCCC
Confidence 4688999999999999988754443
Done!