RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8271
         (65 letters)



>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 65

 Score = 23.8 bits (52), Expect = 0.92
 Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 16 RLIKDRICTRDSL-SVKDANK 35
          RL+ + +CT D++ SV   N+
Sbjct: 34 RLLSEGVCTNDNIPSVSSINR 54


>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 23.4 bits (51), Expect = 1.1
 Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 16 RLIKDRICTRDSL-SVKDANK 35
          RL+ +R+C  D++ SV   N+
Sbjct: 36 RLLAERVCDNDTVPSVSSINR 56


>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein
          {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 154

 Score = 22.0 bits (47), Expect = 6.6
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 13 ELVRLIKDRICTRDSLSVKDANKKHVYRVIQCHED 47
           L R++  R   R  +S++D   +    V    E 
Sbjct: 19 RLSRIMGWRYINRGKMSLRDVLIEARGPVAVVSER 53


>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale
          cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 189

 Score = 21.8 bits (46), Expect = 7.8
 Identities = 4/18 (22%), Positives = 9/18 (50%)

Query: 24 TRDSLSVKDANKKHVYRV 41
          T  +  + D N   +++V
Sbjct: 27 TDGNFVITDVNGNLLFKV 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 231,452
Number of extensions: 7354
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 8
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (21.9 bits)