BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8274
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 307 bits (787), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 156/228 (68%), Positives = 166/228 (72%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 306 bits (783), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 158/218 (72%), Positives = 167/218 (76%), Gaps = 31/218 (14%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 74
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
PQT G + K+I T +G K DVF ICFS
Sbjct: 75 PQTVGETYGKDI-----------TSRG-------------------KDKPIADVFLICFS 104
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGL 179
LV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL
Sbjct: 105 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 164
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P
Sbjct: 165 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 202
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 304 bits (778), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/228 (67%), Positives = 165/228 (72%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAG EDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 303 bits (777), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 155/228 (67%), Positives = 165/228 (72%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DV ICFSL
Sbjct: 73 PQT------------------------------------------------DVSLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 303 bits (777), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 155/228 (67%), Positives = 165/228 (72%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAG EDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 301 bits (770), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/228 (67%), Positives = 164/228 (71%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PAS+ENVRAKW+PEVRHHCPSTPIILVGTKLDLRDDK+TI APITYPQGL+
Sbjct: 85 VSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+AKEI +VKYLECSALTQ+GLKTVFDEAIRAVLCP PT +K+ C LL
Sbjct: 145 LAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRACSLL 192
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 298 bits (762), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/217 (70%), Positives = 158/217 (72%), Gaps = 48/217 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 295 bits (755), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/217 (69%), Positives = 157/217 (72%), Gaps = 48/217 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 17 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DV ICFSL
Sbjct: 77 PQT------------------------------------------------DVSLICFSL 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 89 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 148
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P
Sbjct: 149 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 185
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 295 bits (754), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 151/217 (69%), Positives = 157/217 (72%), Gaps = 48/217 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DV ICFSL
Sbjct: 73 PQT------------------------------------------------DVSLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 181
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 294 bits (753), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 151/217 (69%), Positives = 157/217 (72%), Gaps = 48/217 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DV ICFSL
Sbjct: 75 PQT------------------------------------------------DVSLICFSL 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 87 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P
Sbjct: 147 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 293 bits (751), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 148/215 (68%), Positives = 155/215 (72%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAG EDYDRLRPLSY
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 224
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 225 PQT------------------------------------------------DVFLICFSL 236
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASF +VRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 237 VSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 296
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP
Sbjct: 297 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 293 bits (750), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 149/213 (69%), Positives = 155/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 32 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 91
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 92 PQT------------------------------------------------DVFLICFSL 103
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 104 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 163
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 164 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 293 bits (750), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 148/215 (68%), Positives = 155/215 (72%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAG EDYDRLRPLSY
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 224
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 225 PQT------------------------------------------------DVFLICFSL 236
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASF +VRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 237 VSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 296
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP
Sbjct: 297 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 293 bits (749), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 148/215 (68%), Positives = 155/215 (72%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAG EDYDRLRPLSY
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 224
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 225 PQT------------------------------------------------DVFLICFSL 236
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASF +VRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 237 VSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 296
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP
Sbjct: 297 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 292 bits (748), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 149/213 (69%), Positives = 155/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/213 (69%), Positives = 155/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 292 bits (747), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/213 (69%), Positives = 155/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 99
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 100 PQT------------------------------------------------DVFLICFSL 111
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 112 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 292 bits (747), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/213 (69%), Positives = 155/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 291 bits (744), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 148/213 (69%), Positives = 154/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGK CLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 20 AVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 79
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 80 PQT------------------------------------------------DVFLICFSL 91
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 92 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 151
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 152 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 290 bits (742), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 147/213 (69%), Positives = 155/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 14 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 73
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 74 PQT------------------------------------------------DVFLICFSL 85
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP TPI+LVGTKLDLRDDK+TI APITYPQGL+
Sbjct: 86 VSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLA 145
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA+EIG+VKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 146 MAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 290 bits (741), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 147/213 (69%), Positives = 155/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 14 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 73
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 74 PQT------------------------------------------------DVFLICFSL 85
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP TPI+LVGTKLDLRDDK+TI APITYPQGL+
Sbjct: 86 VSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLA 145
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA+EIG+VKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 146 MAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 290 bits (741), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 148/213 (69%), Positives = 154/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAF GEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 23 AVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 82
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 83 PQT------------------------------------------------DVFLICFSL 94
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 95 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 154
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 155 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 290 bits (741), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 148/213 (69%), Positives = 154/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNA PGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 40 AVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 99
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 100 PQT------------------------------------------------DVFLICFSL 111
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 112 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 290 bits (741), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 148/212 (69%), Positives = 154/212 (72%), Gaps = 48/212 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAV
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 290 bits (741), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 147/215 (68%), Positives = 156/215 (72%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 19 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSY 78
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 79 PQT------------------------------------------------DVFLICFSL 90
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PAS+ENVRAKW+PEVRHHCPSTPIILVGTKLDLRDDK+TI APITYPQGL+
Sbjct: 91 VSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLA 150
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+AKEI +VKYLECSALTQ+GLKTVFDEAIRAVLCP
Sbjct: 151 LAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 185
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 289 bits (740), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 147/213 (69%), Positives = 155/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP TPI+LVGTKLDLRDDK+TI APITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA+EIG+VKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 145 MAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Query: 54 RLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDV 113
+L P++YPQ GL+MA+EIG+VKYLECSALTQ+GLKTVFDEAIRAVL P P K+C V
Sbjct: 133 KLAPITYPQ-GLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLGPPPVKKPGKKCTV 191
Query: 114 F 114
F
Sbjct: 192 F 192
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 148/213 (69%), Positives = 154/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAG EDYDRLRPLSY
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 99
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 100 PQT------------------------------------------------DVFLICFSL 111
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 112 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 288 bits (738), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 148/213 (69%), Positives = 154/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAG EDYDRLRPLSY
Sbjct: 16 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 76 PQT------------------------------------------------DVFLICFSL 87
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI PITYPQGL+
Sbjct: 88 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 147
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 148 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 285 bits (728), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/213 (68%), Positives = 154/213 (72%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 20 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSY 79
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 80 PQT------------------------------------------------DVFLICFSL 91
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+PAS+ENVRAKW+PEVRHHCPSTPIILVGTKLDLRDDK+TI APITYPQGL+
Sbjct: 92 VSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLA 151
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+AKEI +VKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 152 LAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 229 bits (585), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 140/228 (61%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P P K +RCVLL
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEPKKSRRCVLL 191
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 229 bits (585), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 140/228 (61%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 16 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 76 PQT------------------------------------------------DVFLVCFSV 87
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 88 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 147
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P P K +RCVLL
Sbjct: 148 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEPKKSRRCVLL 194
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 229 bits (585), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 140/228 (61%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 14 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 73
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 74 PQT------------------------------------------------DVFLVCFSV 85
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 86 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 145
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P P K +RCVLL
Sbjct: 146 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEPKKSRRCVLL 192
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 229 bits (584), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 140/228 (61%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P P K +RCVLL
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEPKKSRRCVLL 191
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 226 bits (576), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/228 (52%), Positives = 139/228 (60%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG EDYDRLRPLSY
Sbjct: 17 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 77 PQT------------------------------------------------DVFLVCFSV 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 89 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 148
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P P K +RCVLL
Sbjct: 149 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEPKKSRRCVLL 195
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 226 bits (576), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 118/226 (52%), Positives = 138/226 (61%), Gaps = 49/226 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCV 226
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P P K +RCV
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEPKKSRRCV 189
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 138/227 (60%), Gaps = 49/227 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ V + G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVL 227
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P P K +RCVL
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEPKKSRRCVL 190
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 117/225 (52%), Positives = 137/225 (60%), Gaps = 49/225 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 15 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 75 PQT------------------------------------------------DVFLVCFSV 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 87 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRC 225
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P P K +RC
Sbjct: 147 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEPKKSRRC 190
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 223 bits (569), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 117/224 (52%), Positives = 136/224 (60%), Gaps = 50/224 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 20 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 79
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 80 PQT------------------------------------------------DVFLVCFSV 91
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 92 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 151
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P PKK R
Sbjct: 152 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL--EPPEPKKSR 193
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 223 bits (568), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 117/224 (52%), Positives = 136/224 (60%), Gaps = 50/224 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P PKK R
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL--EPPEPKKSR 186
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 223 bits (568), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 117/224 (52%), Positives = 136/224 (60%), Gaps = 50/224 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 16 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 76 PQT------------------------------------------------DVFLVCFSV 87
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 88 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 147
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P PKK R
Sbjct: 148 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL--EPPEPKKSR 189
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/224 (51%), Positives = 135/224 (60%), Gaps = 50/224 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGK CLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 20 AVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 79
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 80 PQT------------------------------------------------DVFLVCFSV 91
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 92 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 151
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P PKK R
Sbjct: 152 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL--EPPEPKKSR 193
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 132/215 (61%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 23 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 82
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 83 PQT------------------------------------------------DVFLVCFSV 94
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 95 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 154
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P
Sbjct: 155 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 189
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 132/215 (61%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 220 bits (561), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 131/213 (61%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+++ AVKY+ECSALTQKGLK VFDEAI A L
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 131/213 (61%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 15 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 75 PQT------------------------------------------------DVFLVCFSV 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 87 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+++ AVKY+ECSALTQKGLK VFDEAI A L
Sbjct: 147 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 219 bits (559), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 131/213 (61%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 17 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 77 PQT------------------------------------------------DVFLVCFSV 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 89 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 148
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+++ AVKY+ECSALTQKGLK VFDEAI A L
Sbjct: 149 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 131/213 (61%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+++ AVKY+ECSALTQ+GLK VFDEAI A L
Sbjct: 145 LARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 219 bits (557), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 130/213 (61%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+++ AVKY+ECSALTQKGLK VFDEAI A L
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 219 bits (557), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 131/213 (61%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+++ AVKY+ECSALTQ+GLK VFDEAI A L
Sbjct: 145 LARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 218 bits (556), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 130/213 (61%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+P VFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+++ AVKY+ECSALTQKGLK VFDEAI A L
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 130/213 (61%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN P EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+++ AVKY+ECSALTQKGLK VFDEAI A L
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 218 bits (555), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 131/215 (60%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG EDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 73 PQT------------------------------------------------DVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TI PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 131/215 (60%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL+SY +AFP EY+PTVFD+Y+ +V V GK LGL+DTAGQEDYDRLRPLSY
Sbjct: 28 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DVF ICFS+
Sbjct: 88 PMT------------------------------------------------DVFLICFSV 99
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
VNPASF+NV+ +W PE++ + P+ P +L+GT++DLRDD +T+ PI QG
Sbjct: 100 VNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+AKEIGA Y+ECSALTQKGLKTVFDEAI A+L P
Sbjct: 160 LAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 128/215 (59%), Gaps = 50/215 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTC+LISYT N FP +Y+PTVFDN+SANV+VDG +NLGLWDTAGQEDY+RLRPLSY
Sbjct: 16 AVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ DVF + FSL
Sbjct: 76 ------------------------------------------------RGADVFLLAFSL 87
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
++ AS+EN+ KW PE++H+ P PI+LVGTKLDLRDDK+ + A IT QG
Sbjct: 88 ISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFL--KDHPGAASITTAQGEE 145
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+ K IGAV+YLECS+ TQ+ +K VFD AIR L P
Sbjct: 146 LRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 197 bits (500), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 127/215 (59%), Gaps = 50/215 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG +NLGLWDTAGQEDY+RLRPLSY
Sbjct: 16 AVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSY 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ DVF + FSL
Sbjct: 76 ------------------------------------------------RGADVFILAFSL 87
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
++ AS+ENV KW PE+RH+ P PIILVGTKLDLRDDK+ PIT QG
Sbjct: 88 ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTNQGEE 145
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+ K IG+ Y+ECS+ TQ+ +K VFD AI+ VL P
Sbjct: 146 LKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 127/215 (59%), Gaps = 50/215 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G +NLGLWDTAGQEDY+RLRPLSY
Sbjct: 18 AVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSY 77
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ DVF + FSL
Sbjct: 78 ------------------------------------------------RGADVFILAFSL 89
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
++ AS+ENV KW PE++H+ P PI+LVGTKLDLRDDK+ PIT QG
Sbjct: 90 ISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFF--IDHPGAVPITTVQGEE 147
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+ K IGA Y+ECS+ +Q+ +K VFD AIR VL P
Sbjct: 148 LKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 130/226 (57%), Gaps = 54/226 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG+ +NLGLWDTAGQEDY RLRPLSY
Sbjct: 19 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSY 78
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ D+F + FSL
Sbjct: 79 ------------------------------------------------RGADIFVLAFSL 90
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
++ AS+ENV KW PE+R P+ PI+LVGTKLDLRDDK + IT QG
Sbjct: 91 ISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNV----ITSTQGEE 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP--VPTVPKKKR 224
+ K+IGA Y+ECS+ TQ+ +K VFD AI+ VL P VP++++
Sbjct: 147 LRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRK 192
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 121/228 (53%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 15 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 75 PDT------------------------------------------------DVILMCFSI 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MA IGA Y+ECSA T+ G++ VF+ A RA L KK C++L
Sbjct: 147 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL-QARRGKKKSGCLIL 193
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 121/228 (53%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 77 PDT------------------------------------------------DVILMCFSI 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 89 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 148
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MA IGA Y+ECSA T+ G++ VF+ A RA L KK C++L
Sbjct: 149 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL-QARRGKKKSGCLVL 195
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 115/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 77 PDT------------------------------------------------DVILMCFSI 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 89 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 148
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 149 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 121/228 (53%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 18 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 77
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 78 PDT------------------------------------------------DVILMCFSI 89
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 90 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 149
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MA IGA Y+ECSA T+ G++ VF+ A RA L KK C++L
Sbjct: 150 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL-QARRGKKKSGCLVL 196
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 115/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 16 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 76 PDT------------------------------------------------DVILMCFSI 87
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 88 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 147
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 148 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 180
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 115/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 17 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 77 PDT------------------------------------------------DVILMCFSI 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 89 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 148
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 149 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 176 bits (447), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 115/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 16 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 76 PDT------------------------------------------------DVILMCFSI 87
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 88 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 147
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 148 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 180
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 176 bits (447), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 115/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 19 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 78
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 79 PDT------------------------------------------------DVILMCFSI 90
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 91 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 150
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 151 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 183
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 114/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDR RPLSY
Sbjct: 15 ACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 75 PDT------------------------------------------------DVILMCFSI 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRD 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 147 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 118/211 (55%), Gaps = 48/211 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKT L++SYTTN +P EYIPT FDN+SA V VDG+P+ L L DTAGQ+++D+LRPL Y
Sbjct: 30 AVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCY 89
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
T D+F +CFS+
Sbjct: 90 TNT------------------------------------------------DIFLLCFSV 101
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
V+P+SF+NV KW PE+R HCP PIILVGT+ DLR+D + + P+
Sbjct: 102 VSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL 161
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211
+A+EI A Y+ECSALTQK LK VFD AI A
Sbjct: 162 LAEEIKAASYIECSALTQKNLKEVFDAAIVA 192
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 120/228 (52%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI + + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 75 PDT------------------------------------------------DVILMCFSI 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MA IGA Y+ECSA T+ G++ VF+ A RA L KK C++L
Sbjct: 147 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL-QARRGKKKSGCLVL 193
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 114/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI + + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 75 PDT------------------------------------------------DVILMCFSI 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 147 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 114/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI + + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 75 PDT------------------------------------------------DVILMCFSI 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 147 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 114/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI + + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 13 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 73 PDT------------------------------------------------DVILMCFSI 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 85 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 145 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 114/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI + + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 13 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 73 PDT------------------------------------------------DVILMCFSI 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 85 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 145 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 114/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 95 PDT------------------------------------------------DVILMCFSI 106
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR D+ T P+ +G
Sbjct: 107 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA I A YLECSA T++G++ VF+ A RA L
Sbjct: 167 MANRISAFGYLECSAKTKEGVREVFEMATRAGL 199
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 117/224 (52%), Gaps = 52/224 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI + + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 15 ACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 75 PDT------------------------------------------------DVILMCFSI 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR D+ T P+ +G
Sbjct: 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
MA I A YLECSA T++G++ VF+ A RA L V K KR
Sbjct: 147 MANRISAFGYLECSAKTKEGVREVFEMATRAGL----QVRKNKR 186
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 113/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI + + FP Y+PTVF+NY A++ VDGK + L LWDTAG EDYDRLRPLSY
Sbjct: 18 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY 77
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 78 PDT------------------------------------------------DVILMCFSI 89
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T P+ +G
Sbjct: 90 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 149
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 150 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 113/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 95 PDT------------------------------------------------DVILMCFSI 106
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H P+ PIILVG K DLR D+ T P+ +G
Sbjct: 107 DSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA I A YLECSA T++G++ VF+ A RA L
Sbjct: 167 MANRISAFGYLECSAKTKEGVREVFEMATRAGL 199
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 169 bits (429), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 112/213 (52%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 35 ACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 95 PDT------------------------------------------------DVILMCFSV 106
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILV K DLR D+ P+ G +
Sbjct: 107 DSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA I A YLECSA T++G++ VF+ A RA L
Sbjct: 167 MAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 112/213 (52%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI + FP Y+PTVF+NY A+V VDG+ + L LWDTAGQEDYDRLRPLSY
Sbjct: 20 ACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSY 79
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P + +V ICFS+
Sbjct: 80 PDS------------------------------------------------NVVLICFSI 91
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
P S ENV+ KW EV H C PIILVG K+DLR+D +TI P+T +G S
Sbjct: 92 DLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQS 151
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A +IGA Y ECSA T G++ VF+ A RA L
Sbjct: 152 VADQIGATGYYECSAKTGYGVREVFEAATRASL 184
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 102/211 (48%), Gaps = 48/211 (22%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT LL+ + AFP Y PTVF+ Y N+ V GKP++L +WDTAGQ+DYDRLRPL YP
Sbjct: 46 GKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPD 105
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
V +CF + +
Sbjct: 106 A------------------------------------------------SVLLLCFDVTS 117
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
P SF+N+ +WYPEV H C PII+VG K DLR DK + P+TY +G MA
Sbjct: 118 PNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMA 177
Query: 183 KEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ +GAV YLECSA + VF EA L
Sbjct: 178 RSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 102/210 (48%), Gaps = 49/210 (23%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RPLSYP
Sbjct: 35 GKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 94
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
+ D ICF +
Sbjct: 95 S------------------------------------------------DAVLICFDISR 106
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
P + ++V KW E++ CP+T ++LVG K DLR D T+ P++Y QG +MA
Sbjct: 107 PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 166
Query: 183 KEIGAVKYLECSAL-TQKGLKTVFDEAIRA 211
K+IGA Y+ECSAL ++ ++ +F A A
Sbjct: 167 KQIGAATYIECSALQSENSVRDIFHVATLA 196
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 130 bits (326), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 102/210 (48%), Gaps = 49/210 (23%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RPLSYP
Sbjct: 19 GKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 78
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
+ D ICF +
Sbjct: 79 S------------------------------------------------DAVLICFDISR 90
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
P + ++V KW E++ CP+T ++LVG K DLR D T+ P++Y QG +MA
Sbjct: 91 PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 150
Query: 183 KEIGAVKYLECSAL-TQKGLKTVFDEAIRA 211
K+IGA Y+ECSAL ++ ++ +F A A
Sbjct: 151 KQIGAATYIECSALQSENSVRDIFHVATLA 180
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 102/210 (48%), Gaps = 49/210 (23%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RPLSYP
Sbjct: 40 GKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
+ D ICF +
Sbjct: 100 S------------------------------------------------DAVLICFDISR 111
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
P + ++V KW E++ CP+T ++LVG K DLR D T+ P++Y QG +MA
Sbjct: 112 PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 171
Query: 183 KEIGAVKYLECSAL-TQKGLKTVFDEAIRA 211
K+IGA Y+ECSAL ++ ++ +F A A
Sbjct: 172 KQIGAATYIECSALQSENSVRDIFHVATLA 201
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 107/221 (48%), Gaps = 59/221 (26%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL++++ P Y+PTVF+N+S + + L LWDTAGQE+YDRLRPLSY
Sbjct: 33 AVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 92
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ DV +CF++
Sbjct: 93 ADS------------------------------------------------DVVLLCFAV 104
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
N SF+N+ KW PE++H+ + +LVG K+DLR D +T +G
Sbjct: 105 NNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD----------DVTKQEGDD 154
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPK 221
+ +++G V Y+E S++ + GL VF++++ + P VPK
Sbjct: 155 LCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP-VPK 194
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 58/213 (27%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL++++ P Y+PTVF+N+S + + L LWDTAGQE+YDRLRPLSY
Sbjct: 32 AVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 91
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ DV +CF++
Sbjct: 92 ADS------------------------------------------------DVVLLCFAV 103
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
N SF+N+ KW PE++H+ + +LVG K+DLR D +T +G
Sbjct: 104 NNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD----------DVTKQEGDD 153
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ +++G V Y+E S++ + GL VF++++ +
Sbjct: 154 LCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 51/213 (23%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT +L + +P Y+PTVF+NY+A + + + + L LWDT+G YD +RPL Y
Sbjct: 23 GKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 82
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
+ D +CF +
Sbjct: 83 S------------------------------------------------DAVLLCFDISR 94
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
P + ++ KW E+ +CPST ++L+G K DLR D T+ API+Y QG ++A
Sbjct: 95 PETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 154
Query: 183 KEIGAVKYLECSALT-QKGLKTVFDEAIRAVLC 214
K++GA YLE SA T +K + ++F A ++LC
Sbjct: 155 KQLGAEIYLEGSAFTSEKSIHSIFRTA--SMLC 185
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 51/213 (23%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT +L + +P Y+PTVF+NY+A + + + + L LWDT+G YD +RPL Y
Sbjct: 22 GKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 81
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
+ D +CF +
Sbjct: 82 S------------------------------------------------DAVLLCFDISR 93
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
P + ++ KW E+ +CPST ++L+G K DLR D T+ API+Y QG ++A
Sbjct: 94 PETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 153
Query: 183 KEIGAVKYLECSALT-QKGLKTVFDEAIRAVLC 214
K++GA YLE SA T +K + ++F A ++LC
Sbjct: 154 KQLGAEIYLEGSAFTSEKSIHSIFRTA--SMLC 184
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 51/213 (23%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT +L + +P Y+PTVF+NY+A + + + + L LWDT+G YD +RPL Y
Sbjct: 39 GKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 98
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
+ D +CF +
Sbjct: 99 S------------------------------------------------DAVLLCFDISR 110
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
P + ++ KW E+ +CPST ++L+G K DLR D T+ API+Y QG ++A
Sbjct: 111 PETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 170
Query: 183 KEIGAVKYLECSALT-QKGLKTVFDEAIRAVLC 214
K++GA YLE SA T +K + ++F A ++LC
Sbjct: 171 KQLGAEIYLEGSAFTSEKSIHSIFRTA--SMLC 201
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QY 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+TG LC F++
Sbjct: 72 MRTG-------------------------------EGFLC----------------VFAI 84
Query: 121 VNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N SFE++ ++ +++ P++LVG K DL + Q
Sbjct: 85 NNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQA 130
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+ G + Y+E SA T++G++ F +R +
Sbjct: 131 QDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QY 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+TG LC F++
Sbjct: 72 MRTG-------------------------------EGFLC----------------VFAI 84
Query: 121 VNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N SFE++ ++ +++ P++LVG K DL + Q
Sbjct: 85 NNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQA 130
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+ G + Y+E SA T++G++ F +R +
Sbjct: 131 QDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QY 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+TG LC F++
Sbjct: 72 MRTG-------------------------------EGFLC----------------VFAI 84
Query: 121 VNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N SFE++ ++ +++ P++LVG K DL + Q
Sbjct: 85 NNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQA 130
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+ G + Y+E SA T++G++ F +R +
Sbjct: 131 QDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QY 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+TG LC F++
Sbjct: 72 MRTG-------------------------------EGFLC----------------VFAI 84
Query: 121 VNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N SFE++ ++ +++ P++LVG K DL + Q
Sbjct: 85 NNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AGRTVESRQA 130
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+ G + Y+E SA T++G++ F +R +
Sbjct: 131 QDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+TG LC F++
Sbjct: 73 MRTG-------------------------------EGFLC----------------VFAI 85
Query: 121 VNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N SFE++ + +++ P++LVG K DL + Q
Sbjct: 86 NNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKSDL-------------PSRTVDTKQA 131
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+ G + ++E SA T++G+ F +R +
Sbjct: 132 QDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+TG LC F++
Sbjct: 73 MRTG-------------------------------EGFLC----------------VFAI 85
Query: 121 VNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N SFE++ + +++ P++LVG K DL + Q
Sbjct: 86 NNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDL-------------PSRTVDTKQA 131
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+ G + ++E SA T++G+ F +R +
Sbjct: 132 QDLARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-EYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 86/215 (40%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAGQE + L P S
Sbjct: 12 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-S 70
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y IR V + +
Sbjct: 71 Y----------------------------------IRDSTVAV-------------VVYD 83
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF+ +KW +VR S II LVG K DL D ++ IT +G
Sbjct: 84 ITNLNSFQQT-SKWIDDVRTERGSDVIIMLVGNKTDLADKRQ------------ITIEEG 130
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
AKE+ +V ++E SA T +K +F A+L
Sbjct: 131 EQRAKEL-SVMFIETSAKTGYNVKQLFRRVASALL 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 79
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 80 G-------------------------------EGFLC----------------VFAINNT 92
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 93 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 138
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 139 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 79
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 80 G-------------------------------EGFLC----------------VFAINNT 92
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 93 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 138
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 139 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 81
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 82 G-------------------------------EGFLC----------------VFAINNT 94
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 95 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 140
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 141 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG + DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNRCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 65/209 (31%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIR 210
A+ G + Y+E SA T++G++ F +R
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F E+ PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY P++ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTA QE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKXDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY P++ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 80
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 81 G-------------------------------EGFLC----------------VFAINNT 93
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 94 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 139
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 140 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTA QE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKXDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DT GQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DT GQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F +Y PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ ++Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG+E+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 65/200 (32%)
Query: 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPL 58
VGKTCLL+ + AF G +I TV ++ V+ VDG + L +WDTAGQE R R +
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE---RFRSV 76
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
++ Y + AL + +
Sbjct: 77 THAY-------------YRDAHALL--------------------------------LLY 91
Query: 119 SLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQ 177
+ N ASF+N++A W E+ + ++L+G K+D ++ +
Sbjct: 92 DVTNKASFDNIQA-WLTEIHEYAQHDVALMLLGNKVDSAHER------------VVKRED 138
Query: 178 GLSMAKEIGAVKYLECSALT 197
G +AKE G + ++E SA T
Sbjct: 139 GEKLAKEYG-LPFMETSAKT 157
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F +Y PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 84/220 (38%), Gaps = 68/220 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ L+ Y TN F + T+ + + ++ VDG+ + L +WDTAGQE + LR
Sbjct: 17 GVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPF 76
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA +C LT FS
Sbjct: 77 YR----------GA----DCCLLT----------------------------------FS 88
Query: 120 LVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIXXXXXXXXAPIT 174
+ + SFEN+ W E ++ P +++G K+D D + +T
Sbjct: 89 VDDRQSFENL-GNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQ-------------VT 134
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214
+ + E G YLE SA + F+EA+R VL
Sbjct: 135 TEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLA 174
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 64/207 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKTC+L ++ +AF +I T+ D + +DGK I L +WDTAGQE R R ++
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE---RFRTIT 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
+M G+ V+D
Sbjct: 75 TAYYRGAM------------------GIMLVYD--------------------------- 89
Query: 120 LVNPASFENVRAKWYPEVRHHCPS-TPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF+N+R W + H + +++G K D+ D ++ ++ +G
Sbjct: 90 ITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDKRQ------------VSKERG 136
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
+A + G +K++E SA ++ F
Sbjct: 137 EKLALDYG-IKFMETSAKANINVENAF 162
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 64/207 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKTC+L ++ +AF +I T+ D + +DGK I L +WDTAGQE R R ++
Sbjct: 16 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE---RFRTIT 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
+M G+ V+D
Sbjct: 73 TAYYRGAM------------------GIMLVYD--------------------------- 87
Query: 120 LVNPASFENVRAKWYPEVRHHCPS-TPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF+N+R W + H + +++G K D+ D ++ ++ +G
Sbjct: 88 ITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDKRQ------------VSKERG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
+A + G +K++E SA ++ F
Sbjct: 135 EKLALDYG-IKFMETSAKANINVENAF 160
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 75
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 76 G-------------------------------EGFLC----------------VFAINNT 88
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ + +++ P++LVG K DL + Q +
Sbjct: 89 KSFEDIH-HYREQIKRVKDSEDVPMVLVGNKSDL-------------PSRTVDTKQAQDL 134
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + ++E SA T++G+ F +R +
Sbjct: 135 ARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 75
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 76 G-------------------------------EGFLC----------------VFAINNT 88
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ + +++ P++LVG K DL + Q +
Sbjct: 89 KSFEDIH-HYREQIKRVKDSEDVPMVLVGNKSDL-------------PSRTVDTKQAQDL 134
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + ++E SA T++G+ F +R +
Sbjct: 135 ARSYG-IPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+ +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 85/227 (37%), Gaps = 68/227 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +T N F E T+ ++ ++ VDGK I +WDTAGQE Y R+
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L + +
Sbjct: 75 YR----------GAVGAL--------------------------------------LVYD 86
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ ++ENV +W E+R H S +I LVG K DLR P +
Sbjct: 87 IAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLR----------HLRAVPTDEARA 135
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRC 225
+ E + ++E SAL T +EA + +L + + +K+
Sbjct: 136 FA---EKNNLSFIETSALDS----TNVEEAFKNILTEIYRIVSQKQI 175
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R Y +T
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRD-QYMRT 79
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 80 G-------------------------------EGFLC----------------VFAINNT 92
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 93 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDL-------------AARTVESRQAQDL 138
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 139 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F E PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 75 G-------------------------------EGFLC----------------VFAINNT 87
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ ++ +++ P++LVG K DL + Q +
Sbjct: 88 KSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDL-------------AARTVESRQAQDL 133
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + Y+E SA T++G++ F +R +
Sbjct: 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 64/206 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L++ Y N F ++I T+ ++ + + + GK +NL +WDTAGQE + L P+ Y
Sbjct: 17 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ GA+ + + +
Sbjct: 77 RDSN-------GAI-----------------------------------------LVYDI 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIXXXXXXXXAPITYPQGL 179
+ SF+ V+ W E+R + + +VG K+DL ++ ++ +
Sbjct: 89 TDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKERH------------VSIQEAE 135
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVF 205
S A+ +GA K+ SA KG++ +F
Sbjct: 136 SYAESVGA-KHYHTSAKQNKGIEELF 160
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 65/207 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + F +I T+ D V ++GK + L +WDTAGQE + +
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA+ G+ V+D
Sbjct: 73 YR----------GAM-----------GIILVYD--------------------------- 84
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ + +F N++ +W+ V H ++LVG K D+ +T QG
Sbjct: 85 ITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDME-------------TRVVTADQG 130
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
++AKE+G + ++E SA + +F
Sbjct: 131 EALAKELG-IPFIESSAKNDDNVNEIF 156
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 64/206 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L++ Y N F ++I T+ ++ + + + GK +NL +WDTAGQE + L P+ Y
Sbjct: 17 VGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ GA+ + + +
Sbjct: 77 RDSN-------GAI-----------------------------------------LVYDI 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIXXXXXXXXAPITYPQGL 179
+ SF+ V+ W E+R + + +VG K+DL ++ ++ +
Sbjct: 89 TDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKERH------------VSIQEAE 135
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVF 205
S A+ +GA K+ SA KG++ +F
Sbjct: 136 SYAESVGA-KHYHTSAKQNKGIEELF 160
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 65/207 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + F +I T+ D V ++GK + L LWDTAGQE + +
Sbjct: 17 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 76
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA+ G+ V+D
Sbjct: 77 YR----------GAM-----------GIILVYD--------------------------- 88
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ + +F N++ +W+ V H ++LVG K D+ +T QG
Sbjct: 89 VTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDME-------------TRVVTADQG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
++AKE+G + ++E SA + +F
Sbjct: 135 EALAKELG-IPFIESSAKNDDNVNEIF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 85/206 (41%), Gaps = 64/206 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L++ Y N F ++I T+ ++ + + + GK +NL +WDTAGQE + L P+ Y
Sbjct: 31 VGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYY 90
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ GA+ + + +
Sbjct: 91 RDSN-------GAI-----------------------------------------LVYDI 102
Query: 121 VNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIXXXXXXXXAPITYPQGL 179
+ SF+ V+ W E+R + + +VG K+DL ++ ++ +
Sbjct: 103 TDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKERH------------VSIQEAE 149
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVF 205
S A+ +GA K+ SA KG++ +F
Sbjct: 150 SYAESVGA-KHYHTSAKQNKGIEELF 174
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 82/210 (39%), Gaps = 62/210 (29%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I + + F +Y PT+ D+Y+ ++D + L + DTAGQE++ +R Y +T
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMRE-QYMRT 76
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G + F + FS+ +
Sbjct: 77 G-----------------------------------------------EGFLLVFSVTDR 89
Query: 124 ASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
SFE + +R P+IL+G K DL ++ +T +G +A
Sbjct: 90 GSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ------------VTQEEGQQLA 137
Query: 183 KEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+++ V Y+E SA + + F E +R +
Sbjct: 138 RQL-KVTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 65/207 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + F +I T+ D V ++GK + L LWDTAGQE + +
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA+ G+ V+D
Sbjct: 90 YR----------GAM-----------GIILVYD--------------------------- 101
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ + +F N++ +W+ V H ++LVG K D+ +T QG
Sbjct: 102 VTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDME-------------TRVVTADQG 147
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
++AKE+G + ++E SA + +F
Sbjct: 148 EALAKELG-IPFIESSAKNDDNVNEIF 173
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R Y +T
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRD-QYMRT 92
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 93 G-------------------------------EGFLC----------------VFAINNT 105
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SFE++ + +++ P++LVG K DL + Q +
Sbjct: 106 KSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDL-------------PSRTVDTKQAQDL 151
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ G + ++E SA T++G+ F +R +
Sbjct: 152 ARSYG-IPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 82/207 (39%), Gaps = 65/207 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + F +I T+ D V ++GK + L LWDTAGQE + +
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA G+ V+D
Sbjct: 73 YR----------GAX-----------GIILVYD--------------------------- 84
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ + +F N++ +W+ V H ++LVG K D ET +T QG
Sbjct: 85 VTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNK----SDXET---------RVVTADQG 130
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
++AKE+G + ++E SA + +F
Sbjct: 131 EALAKELG-IPFIESSAKNDDNVNEIF 156
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 68/220 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ L+ Y TN F + T+ + + ++ VDG + + +WDTAGQE + LR
Sbjct: 21 GVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 80
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + +C LT FS
Sbjct: 81 YRGS--------------DCCLLT----------------------------------FS 92
Query: 120 LVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIXXXXXXXXAPIT 174
+ + SF+N+ + W E ++ S P +++G K D+++ + ++
Sbjct: 93 VDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKTDIKERQ-------------VS 138
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214
+ + K+ G Y E SA + F+EA+R +L
Sbjct: 139 TEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILA 178
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 65/211 (30%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 92
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G LC F++ N
Sbjct: 93 G-------------------------------EGFLC----------------VFAINNS 105
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SF ++ + +++ P++LVG K DL + Q +
Sbjct: 106 KSFADINL-YREQIKRVKDSDDVPMVLVGNKCDL-------------PTRTVDTKQAHEL 151
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
AK G + ++E SA T++G++ F +R +
Sbjct: 152 AKSYG-IPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 65/215 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAG EDY +R +Y
Sbjct: 13 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRD-NY 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
++G + F + FS+
Sbjct: 72 FRSG-----------------------------------------------EGFLLVFSI 84
Query: 121 VNPASFENVRAKWYPE---VRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQ 177
SF A++ + V+ P+++VG K DL + ++ P+ +
Sbjct: 85 TEHESF-TATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQV----------PV--EE 131
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
S A+E G V+Y+E SA T+ + VF + +R +
Sbjct: 132 ARSKAEEWG-VQYVETSAKTRANVDKVFFDLMREI 165
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 65/215 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAG EDY +R +Y
Sbjct: 17 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRD-NY 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
++G + F + FS+
Sbjct: 76 FRSG-----------------------------------------------EGFLLVFSI 88
Query: 121 VNPASFENVRAKWYPE---VRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQ 177
SF A++ + V+ P+++VG K DL + ++ P+ +
Sbjct: 89 TEHESF-TATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQV----------PV--EE 135
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
S A+E G V+Y+E SA T+ + VF + +R +
Sbjct: 136 ARSKAEEWG-VQYVETSAKTRANVDKVFFDLMREI 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 65/207 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + F +I T+ D V ++GK + L +WDTAGQE + +
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA G+ V+D
Sbjct: 73 YR----------GAX-----------GIILVYD--------------------------- 84
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ + +F N++ +W+ V H ++LVG K D ET +T QG
Sbjct: 85 ITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNK----SDXET---------RVVTADQG 130
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
++AKE+G + ++E SA + +F
Sbjct: 131 EALAKELG-IPFIESSAKNDDNVNEIF 156
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 78/207 (37%), Gaps = 64/207 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGKT ++ + + F Y T+ D S + +D P+ L LWDTAGQE + L P
Sbjct: 11 AVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIP-- 68
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y+ SA AI + +
Sbjct: 69 ---------------SYIRDSA-----------AAI--------------------VVYD 82
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SFEN KW ++ + II LVG K DL D ++ +TY +G
Sbjct: 83 ITNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDLGDLRK------------VTYEEG 129
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
A+E + E SA +K +F
Sbjct: 130 XQKAQEYNTX-FHETSAKAGHNIKVLF 155
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +Y
Sbjct: 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRD-NY 86
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
++G LC FS+
Sbjct: 87 FRSG-------------------------------EGFLC----------------VFSI 99
Query: 121 VNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
SF A + ++ + P +LVG K DL D ++ ++ +
Sbjct: 100 TEMESFA-ATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ------------VSVEEA 146
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A++ V Y+E SA T+ + VF + +R +
Sbjct: 147 KNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 84/219 (38%), Gaps = 68/219 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L+ + ++F Y T+ D S + ++ + I L LWDTAGQE + L P S
Sbjct: 16 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIP-S 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y IR V + +
Sbjct: 75 Y----------------------------------IRDSAAAV-------------VVYD 87
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF+ KW +VR S II LVG K DL D ++ ++ +G
Sbjct: 88 ITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ------------VSIEEG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
AKE+ V ++E SA +K +F R V +P
Sbjct: 135 ERKAKELN-VMFIETSAKAGYNVKQLF----RRVAAALP 168
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +Y
Sbjct: 16 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRD-NY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
++G LC FS+
Sbjct: 75 FRSG-------------------------------EGFLC----------------VFSI 87
Query: 121 VNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
SF A + ++ + P +LVG K DL D ++ ++ +
Sbjct: 88 TEMESFA-ATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ------------VSVEEA 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A++ V Y+E SA T+ + VF + +R +
Sbjct: 135 KNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +Y
Sbjct: 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRD-NY 82
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
++G LC FS+
Sbjct: 83 FRSG-------------------------------EGFLC----------------VFSI 95
Query: 121 VNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
SF A + ++ + P +LVG K DL D ++ ++ +
Sbjct: 96 TEMESFA-ATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ------------VSVEEA 142
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A++ V Y+E SA T+ + VF + +R +
Sbjct: 143 KNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 175
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 68/220 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ L+ Y TN F + T+ + + ++ VDG + + +WDTAGQE + LR
Sbjct: 19 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 78
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + +C LT FS
Sbjct: 79 YRGS--------------DCCLLT----------------------------------FS 90
Query: 120 LVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIXXXXXXXXAPIT 174
+ + SF+N+ + W E ++ S P +++G K+D+ + + ++
Sbjct: 91 VDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-------------VS 136
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214
+ + ++ G Y E SA + F+EA+R VL
Sbjct: 137 TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 176
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 68/220 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ L+ Y TN F + T+ + + ++ VDG + + +WDTAGQE + LR
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 76
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + +C LT FS
Sbjct: 77 YRGS--------------DCCLLT----------------------------------FS 88
Query: 120 LVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIXXXXXXXXAPIT 174
+ + SF+N+ + W E ++ S P +++G K+D+ + + ++
Sbjct: 89 VDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-------------VS 134
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214
+ + ++ G Y E SA + F+EA+R VL
Sbjct: 135 TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +Y
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRD-NY 72
Query: 61 PQTG 64
++G
Sbjct: 73 FRSG 76
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 84/219 (38%), Gaps = 68/219 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAGQE + L P S
Sbjct: 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-S 82
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y IR V + +
Sbjct: 83 Y----------------------------------IRDSTVAV-------------VVYD 95
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF +KW +VR S II LVG K DL D ++ ++ +G
Sbjct: 96 ITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ------------VSTEEG 142
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
AKE+ V ++E SA +K +F R V +P
Sbjct: 143 ERKAKELN-VMFIETSAKAGYNVKQLF----RRVAAALP 176
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 51/161 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ ++ + + +YI T+ ++ V +DGK + L +WDTAGQE R R ++
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE---RFRTIT 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y S G+ V+D
Sbjct: 75 SS--------------YYRGS----HGIIIVYD--------------------------- 89
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPI-ILVGTKLDLRDDK 159
+ + SF V+ W E+ + ST + +LVG K DL+D +
Sbjct: 90 VTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKR 129
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 51/161 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ ++ + + +YI T+ ++ V +DGK + L +WDTAGQE R R ++
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE---RFRTIT 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y S G+ V+D
Sbjct: 75 SS--------------YYRGS----HGIIIVYD--------------------------- 89
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPI-ILVGTKLDLRDDK 159
+ + SF V+ W E+ + ST + +LVG K DL+D +
Sbjct: 90 VTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKR 129
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 80/207 (38%), Gaps = 64/207 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAGQE + L P S
Sbjct: 11 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-S 69
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y IR V + +
Sbjct: 70 Y----------------------------------IRDSTVAV-------------VVYD 82
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF+ KW +VR S II LVG K DL D ++ ++ +G
Sbjct: 83 ITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ------------VSIEEG 129
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
AKE+ V ++E SA +K +F
Sbjct: 130 ERKAKELN-VMFIETSAKAGYNVKQLF 155
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 50/155 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL+ + N F G YI T+ ++ V ++G+ + L +WDTAGQE + +
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y T G+ V+D
Sbjct: 79 YRGT---------------------HGVIVVYD--------------------------- 90
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLD 154
+ + SF NV+ +W E+ +C ILVG K D
Sbjct: 91 VTSAESFVNVK-RWLHEINQNCDDVCRILVGNKND 124
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 51/161 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ ++ + + +YI T+ ++ V +DGK + L +WDTAGQE R R ++
Sbjct: 31 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE---RFRTIT 87
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y S G+ V+D
Sbjct: 88 SS--------------YYRGS----HGIIIVYD--------------------------- 102
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPI-ILVGTKLDLRDDK 159
+ + SF V+ W E+ + ST + +LVG K DL+D +
Sbjct: 103 VTDQESFNGVKM-WLQEIDRYATSTVLKLLVGNKCDLKDKR 142
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 61/158 (38%), Gaps = 51/158 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +T N F E T+ ++ ++ VDGK I +WDTAGQE Y +
Sbjct: 30 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 89
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L + +
Sbjct: 90 YR----------GAVGAL--------------------------------------LVYD 101
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLR 156
+ ++ENV +W E+R H S +I LVG K DLR
Sbjct: 102 IAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLR 138
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 61/158 (38%), Gaps = 51/158 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +T N F E T+ ++ ++ VDGK I +WDTAGQE Y +
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 98
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L + +
Sbjct: 99 YR----------GAVGAL--------------------------------------LVYD 110
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLR 156
+ ++ENV +W E+R H S +I LVG K DLR
Sbjct: 111 IAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLR 147
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 81/207 (39%), Gaps = 64/207 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ +T F + T+ + A ++ +DGK I L +WDTAGQE + R ++
Sbjct: 20 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF---RSIT 76
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
++ + A A+L T R D F
Sbjct: 77 ----------------------------RSYYRGAAGALLVYDIT-----RRDTF----- 98
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N W + R H S +I L+G K DL +E + +G
Sbjct: 99 --------NHLTTWLEDARQHSNSNMVIMLIGNKSDLESRRE------------VKKEEG 138
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
+ A+E G + ++E SA T ++ F
Sbjct: 139 EAFAREHGLI-FMETSAKTASNVEEAF 164
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 61/213 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + F +Y PT+ D+Y V VD + L + DTAG E + +R L Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDL-Y 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ G F + +S+
Sbjct: 72 MKNGQG-----------------------------------------------FALVYSI 84
Query: 121 VNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGL 179
++F +++ +R P+ILVG K DL D++ + QG
Sbjct: 85 TAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER------------VVGKEQGQ 132
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A++ +LE SA ++ + +F + +R +
Sbjct: 133 NLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 61/213 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + F +Y PT+ D+Y V VD + L + DTAG E + +R L Y
Sbjct: 15 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDL-Y 73
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ G F + +S+
Sbjct: 74 MKNGQG-----------------------------------------------FALVYSI 86
Query: 121 VNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGL 179
++F +++ +R P+ILVG K DL D++ + QG
Sbjct: 87 TAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER------------VVGKEQGQ 134
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A++ +LE SA ++ + +F + +R +
Sbjct: 135 NLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 81/213 (38%), Gaps = 61/213 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + F EY PT+ D+Y V VD + L + DTAG E + +R L Y
Sbjct: 13 GVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL-Y 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ G F + +S+
Sbjct: 72 MKNGQG-----------------------------------------------FALVYSI 84
Query: 121 VNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGL 179
++F +++ +R P+ILVG K DL D++ + QG
Sbjct: 85 TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER------------VVGKEQGQ 132
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A++ +LE SA ++ + +F + +R +
Sbjct: 133 NLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 67/220 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPI-NLGLWDTAGQEDYDRLRPL 58
VGKT L+ Y + + +Y T+ ++ + V VDG + + +WDTAGQE + L
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y R C V + +
Sbjct: 78 FY-----------------------------------RGADCCV-------------LVY 89
Query: 119 SLVNPASFENVRAKWYPEVRHHC----PST-PIILVGTKLDLRDDKETIXXXXXXXXAPI 173
+ N +SFEN+++ W E H P T P +++G K+D + K+ +
Sbjct: 90 DVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-----------V 137
Query: 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ +AK +G + SA + T F+E R+ L
Sbjct: 138 SEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 86/223 (38%), Gaps = 79/223 (35%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV---------DGKP--INLGLWDTAGQ 49
VGKT L YT N F ++I TV ++ +V GK ++L LWDTAGQ
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
Query: 50 EDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 109
E R R L+ F +A+
Sbjct: 95 E---RFRSLT----------------------------TAFFRDAMG------------- 110
Query: 110 RCDVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXX 167
F + F L + SF NVR W +++ +C + I+L+G K DL D +E
Sbjct: 111 ----FLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQRE------- 158
Query: 168 XXXAPITYPQGLSMAKEIGAVKYLECSALT----QKGLKTVFD 206
+ Q +A + G + Y E SA T +K ++T+ D
Sbjct: 159 -----VNERQARELADKYG-IPYFETSAATGQNVEKAVETLLD 195
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAG EDY +R +Y
Sbjct: 16 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRD-NY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
++G LC FS+
Sbjct: 75 FRSG-------------------------------EGFLC----------------VFSI 87
Query: 121 VNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
SF A + ++ + P +LVG K DL D ++ ++ +
Sbjct: 88 TEMESFA-ATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ------------VSVEEA 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A++ V Y+E SA T+ + VF + +R +
Sbjct: 135 KNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 83/219 (37%), Gaps = 68/219 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAG E + L P S
Sbjct: 16 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIP-S 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y IR V + +
Sbjct: 75 Y----------------------------------IRDSTVAV-------------VVYD 87
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF+ KW +VR S II LVG K DL D ++ ++ +G
Sbjct: 88 ITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ------------VSIEEG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
AKE+ V ++E SA +K +F R V +P
Sbjct: 135 ERKAKELN-VMFIETSAKAGYNVKQLF----RRVAAALP 168
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 61/213 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + F +Y PT+ D+Y V VD + L + DTAG E + +R L Y
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDL-Y 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ G F + +S+
Sbjct: 72 MKNGQG-----------------------------------------------FALVYSI 84
Query: 121 VNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGL 179
++F +++ +R P+ILVG K DL D++ + QG
Sbjct: 85 TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER------------VVGKEQGQ 132
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A++ +LE SA ++ + +F + +R +
Sbjct: 133 NLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 60/158 (37%), Gaps = 51/158 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +T N F E T+ ++ ++ VDGK I +WDTAG E Y +
Sbjct: 18 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 77
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L + +
Sbjct: 78 YR----------GAVGAL--------------------------------------LVYD 89
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLR 156
+ ++ENV +W E+R H S +I LVG K DLR
Sbjct: 90 IAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLR 126
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 83/219 (37%), Gaps = 68/219 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L+ + ++F Y T+ D S + ++ + I L LWDTAG E + L P S
Sbjct: 23 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP-S 81
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y IR V + +
Sbjct: 82 Y----------------------------------IRDSAAAV-------------VVYD 94
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF+ KW +VR S II LVG K DL D ++ ++ +G
Sbjct: 95 ITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ------------VSIEEG 141
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
AKE+ V ++E SA +K +F R V +P
Sbjct: 142 ERKAKELN-VMFIETSAKAGYNVKQLF----RRVAAALP 175
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 60/158 (37%), Gaps = 51/158 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +T N F E T+ ++ ++ VDGK I +WDTAG E Y +
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L + +
Sbjct: 75 YR----------GAVGAL--------------------------------------LVYD 86
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLR 156
+ ++ENV +W E+R H S +I LVG K DLR
Sbjct: 87 IAKHLTYENVE-RWLKELRDHADSNIVIXLVGNKSDLR 123
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 60/158 (37%), Gaps = 51/158 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +T N F E T+ ++ ++ VDGK I +WDTAG E Y +
Sbjct: 21 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 80
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L + +
Sbjct: 81 YR----------GAVGAL--------------------------------------LVYD 92
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLR 156
+ ++ENV +W E+R H S +I LVG K DLR
Sbjct: 93 IAKHLTYENVE-RWLKELRDHADSNIVIXLVGNKSDLR 129
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 66/216 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL+ +T + F E T+ ++ + VDG L +WDTAGQE + L P
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA +G+ V+D R +
Sbjct: 85 YR----------GA-----------QGVILVYDVTRRDTFVKLDN--------------- 108
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII--LVGTKLDLRDDKETIXXXXXXXXAPITYPQ 177
W E+ +C I+ LVG K+D ++++E + +
Sbjct: 109 -------------WLNELETYCTRNDIVNXLVGNKID-KENRE------------VDRNE 142
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
GL A++ + ++E SA T G++ F+E + ++
Sbjct: 143 GLKFARKHSXL-FIEASAKTCDGVQCAFEELVEKII 177
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL +T F + T+ + ++ V G+ I L +WDTAGQE R R ++
Sbjct: 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE---RFRAVT 81
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y +A G V+D R+
Sbjct: 82 RS--------------YYRGAA----GALMVYDITRRSTY-------------------- 103
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N + W + R+ P+T IIL+G K DL ++ +TY +
Sbjct: 104 --------NHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD------------VTYEEA 143
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+E G + +LE SA T + ++ F EA + +
Sbjct: 144 KQFAEENGLL-FLEASAKTGENVEDAFLEAAKKI 176
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 60/158 (37%), Gaps = 51/158 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +T N F E T+ ++ ++ VDGK I +WDTAG E Y +
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L + +
Sbjct: 99 YR----------GAVGAL--------------------------------------LVYD 110
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLR 156
+ ++ENV +W E+R H S +I LVG K DLR
Sbjct: 111 IAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLR 147
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 9 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 65
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 64/199 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ +T F + T+ + A V +DGK I L +WDTAGQE + +
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA L + +
Sbjct: 91 YR----------GAAGAL--------------------------------------LVYD 102
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ +F ++ W + R H S +I L+G K DL ++ + +G
Sbjct: 103 ITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD------------VKREEG 149
Query: 179 LSMAKEIGAVKYLECSALT 197
+ A+E G + ++E SA T
Sbjct: 150 EAFAREHGLI-FMETSAKT 167
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 86/223 (38%), Gaps = 79/223 (35%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV------DGKP-----INLGLWDTAGQ 49
VGKT L YT N F ++I TV ++ +V DG ++L LWDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 50 EDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 109
E R R L+ F +A+
Sbjct: 81 E---RFRSLT----------------------------TAFFRDAMG------------- 96
Query: 110 RCDVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXX 167
F + F L + SF NVR W +++ +C + I+L+G K DL D +E
Sbjct: 97 ----FLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQRE------- 144
Query: 168 XXXAPITYPQGLSMAKEIGAVKYLECSALT----QKGLKTVFD 206
+ Q +A++ G + Y E SA T +K ++T+ D
Sbjct: 145 -----VNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLD 181
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 72
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 83/219 (37%), Gaps = 68/219 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAG E + L P S
Sbjct: 26 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIP-S 84
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y IR V + +
Sbjct: 85 Y----------------------------------IRDSTVAV-------------VVYD 97
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF+ KW +VR S II LVG K DL D ++ ++ +G
Sbjct: 98 ITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ------------VSIEEG 144
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
AKE+ V ++E SA +K +F R V +P
Sbjct: 145 ERKAKELN-VMFIETSAKAGYNVKQLF----RRVAAALP 178
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap
Domain Of Lepb In Complex With Rab1b Bound To Gdp And
Bef3
Length = 181
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 75
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 62/210 (29%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L + + T F +Y PT+ D Y + VD P L + DTAG E + +R L Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL-YIKN 74
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G F + +SLVN
Sbjct: 75 GQG-----------------------------------------------FILVYSLVNQ 87
Query: 124 ASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
SF++++ +R P+ILVG K+DL ++ +G ++A
Sbjct: 88 QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL------------ESEREVSSSEGRALA 135
Query: 183 KEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+E G ++E SA ++ + +F E +R +
Sbjct: 136 EEWGC-PFMETSAKSKTMVDELFAEIVRQM 164
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 16 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 72
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp
At Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3
In Complex With The Gap Domain Of Tbc1d20 From Homo
Sapiens
Length = 175
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 19 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 75
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 86/223 (38%), Gaps = 79/223 (35%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV------DGKP-----INLGLWDTAGQ 49
VGKT L YT N F ++I TV ++ +V DG ++L LWDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 50 EDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 109
E R R L+ F +A+
Sbjct: 81 E---RFRSLT----------------------------TAFFRDAMG------------- 96
Query: 110 RCDVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXX 167
F + F L + SF NVR W +++ +C + I+L+G K DL D +E
Sbjct: 97 ----FLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQRE------- 144
Query: 168 XXXAPITYPQGLSMAKEIGAVKYLECSALT----QKGLKTVFD 206
+ Q +A++ G + Y E SA T +K ++T+ D
Sbjct: 145 -----VNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLD 181
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 18 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 74
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 8 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 64
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 77/212 (36%), Gaps = 68/212 (32%)
Query: 3 GKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GK+ L++ + + F I F +S + V+ + +WDTAGQE Y L P+
Sbjct: 24 GKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLAPMY 81
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y R + I F
Sbjct: 82 Y-----------------------------------RGAAAAI-------------IVFD 93
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N ASFE + KW E++ P+ + L G K DL D ++ +T
Sbjct: 94 VTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDARK------------VTAEDA 140
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210
+ A+E G + ++E SA T +K +F E R
Sbjct: 141 QTYAQENG-LFFMETSAKTATNVKEIFYEIAR 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 35 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 91
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 89/228 (39%), Gaps = 62/228 (27%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGKT L + F Y PTV + YS V + +L L DTAGQ++Y L P S+
Sbjct: 35 VGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL-PYSFI 93
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
IG Y+ + +S+
Sbjct: 94 ---------IGVHGYV--------------------------------------LVYSVT 106
Query: 122 NPASFENVRAKWYPEVRHHCPS-TPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLS 180
+ SF+ + + + H + P++LVG K DL ++E + +G
Sbjct: 107 SLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE------------VQAVEGKK 154
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+A+ GA ++E SA + + +F + I+ + + +++RC L+
Sbjct: 155 LAESWGAT-FMESSARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 99
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 82
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK CLL+ + + + YI T+ ++ + +DGK I L +WDTAGQE R R ++
Sbjct: 26 GVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 82
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 72/193 (37%), Gaps = 62/193 (32%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I + F EY PT+ D+Y + +D + L + DTAGQE++ +R Y +T
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMRE-QYMRT 89
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G D F I +S+ +
Sbjct: 90 G-----------------------------------------------DGFLIVYSVTDK 102
Query: 124 ASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
ASFE+V +R S P+ILV K+DL +T QG MA
Sbjct: 103 ASFEHVDRFHQLILRVKDRESFPMILVANKVDL------------MHLRKVTRDQGKEMA 150
Query: 183 KEIGAVKYLECSA 195
+ + Y+E SA
Sbjct: 151 TKYN-IPYIETSA 162
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 81/217 (37%), Gaps = 65/217 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L Y ++F ++ TV D V K I L +WDTAGQE Y +
Sbjct: 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA+ +L + +
Sbjct: 92 YR----------GAMGFL--------------------------------------LMYD 103
Query: 120 LVNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF V+ W +++ + + +ILVG K DL D++ + G
Sbjct: 104 IANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDER------------VVPAEDG 150
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+A ++G ++ E SA +K VF E + V+C
Sbjct: 151 RRLADDLG-FEFFEASAKENINVKQVF-ERLVDVICE 185
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 63/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKT L+ +T + F TV ++ V + GK I L +WDTAGQE ++ +
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + KG+ V+D + +P
Sbjct: 96 YR---------------------SAKGIILVYDITKKETFDDLP---------------- 118
Query: 120 LVNPASFENVRAKWYPEV-RHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
KW + ++ ++LVG KLD D+E IT QG
Sbjct: 119 ------------KWMKMIDKYASEDAELLLVGNKLDCETDRE------------ITRQQG 154
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A++I +++ E SA + +F + + +L
Sbjct: 155 EKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 83/223 (37%), Gaps = 79/223 (35%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV------DGKP-----INLGLWDTAGQ 49
VGKT L YT N F ++I TV ++ +V DG ++L LWDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 50 EDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 109
E R R L T +
Sbjct: 81 E---RFRSL---------------------------------------------TTAFFR 92
Query: 110 RCDVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXX 167
F + F L + SF NVR W +++ +C + I+L+G K DL D +E
Sbjct: 93 DAXGFLLXFDLTSQQSFLNVR-NWXSQLQANAYCENPDIVLIGNKADLPDQRE------- 144
Query: 168 XXXAPITYPQGLSMAKEIGAVKYLECSALT----QKGLKTVFD 206
+ Q +A++ G + Y E SA T +K ++T+ D
Sbjct: 145 -----VNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLD 181
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL +T F + T+ + ++ V G+ I L +WDTAGQ R R ++
Sbjct: 40 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ---GRFRAVT 96
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y +A G V+D
Sbjct: 97 RS--------------YYRGAA----GALMVYD--------------------------- 111
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ S N + W + R+ P+T IIL+G K DL ++ +TY +
Sbjct: 112 -ITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD------------VTYEEA 158
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+E G + +LE SA T + ++ F EA + +
Sbjct: 159 KQFAEENGLL-FLEASAKTGENVEDAFLEAAKKI 191
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRL 55
VGKT L+ Y F +Y T+ ++ + VMVD + + + +WDTAGQE + L
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 64/172 (37%), Gaps = 62/172 (36%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-------YSAN----VMVDGKPINLGLWDTAGQ 49
VGKT +L YT F ++I TV + Y AN + G+ I+L LWDTAG
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80
Query: 50 EDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 109
E R R L+ F +A+
Sbjct: 81 E---RFRSLT----------------------------TAFFRDAMG------------- 96
Query: 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPST--PIILVGTKLDLRDDK 159
F + F L N SF NVR W +++ H S I+L G K DL D +
Sbjct: 97 ----FLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQR 143
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 85/223 (38%), Gaps = 79/223 (35%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV------DGKP-----INLGLWDTAGQ 49
VGKT L YT N F ++I TV ++ +V DG ++L LWDTAG
Sbjct: 21 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGL 80
Query: 50 EDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 109
E R R L+ F +A
Sbjct: 81 E---RFRSLT----------------------------TAFFRDAXG------------- 96
Query: 110 RCDVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXX 167
F + F L + SF NVR W +++ +C + I+L+G K DL D +E
Sbjct: 97 ----FLLXFDLTSQQSFLNVR-NWXSQLQANAYCENPDIVLIGNKADLPDQRE------- 144
Query: 168 XXXAPITYPQGLSMAKEIGAVKYLECSALT----QKGLKTVFD 206
+ Q +A++ G + Y E SA T +K ++T+ D
Sbjct: 145 -----VNERQARELAEKYG-IPYFETSAATGQNVEKSVETLLD 181
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRL 55
VGKT L+ Y F +Y T+ ++ + VMVD + + + +WDTAGQE + L
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRL 55
VGKT L+ Y F +Y T+ ++ + VMVD + + + +WDTAGQE + L
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 65/217 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L Y ++F ++ TV D + + K I L +WDTAGQE Y +
Sbjct: 15 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAY 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA+ ++ + +
Sbjct: 75 YR----------GAMGFI--------------------------------------LMYD 86
Query: 120 LVNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF V+ W +++ + + ++LVG K D+ D++ ++ +G
Sbjct: 87 ITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDER------------VVSSERG 133
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+A +G ++ E SA +K F E + V+C
Sbjct: 134 RQLADHLG-FEFFEASAKDNINVKQTF-ERLVDVICE 168
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 79/214 (36%), Gaps = 70/214 (32%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I + + F +Y PT+ D+Y+ VDG P L + DTAGQE++ +R Y +
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMRE-QYMRA 80
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G F + F++ +
Sbjct: 81 GHG-----------------------------------------------FLLVFAINDR 93
Query: 124 ASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSM 181
SF V K + ++ P++LVG K DL ++ P+ S
Sbjct: 94 QSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQV--------------PR--SE 136
Query: 182 AKEIGA---VKYLECSALTQKGLKTVFDEAIRAV 212
A GA V Y E SA + + F++ +RAV
Sbjct: 137 ASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 68/209 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ + + + YI T+ ++ + ++ K + L +WDTAGQE R R +
Sbjct: 19 GVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE---RFRTIT 75
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + GA G+ V+D
Sbjct: 76 SSYYR---------GA-----------HGIIIVYD------------------------- 90
Query: 118 FSLVNPASFENVRAKWYPEV-RHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYP 176
+ + SF+NV+ +W E+ R+ + +LVG K DL +T
Sbjct: 91 --VTDRDSFDNVK-QWIQEIDRYAMENVNKLLVGNKCDL------------VSKRVVTSD 135
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVF 205
+G +A G +K++E SA ++ F
Sbjct: 136 EGRELADSHG-IKFIETSAKNAYNVEQAF 163
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 58/158 (36%), Gaps = 51/158 (32%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKTCL + FP T+ D V +DG+ I + LWDTAGQE +
Sbjct: 31 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF-------- 82
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+K + + + AV+ + +
Sbjct: 83 -----------------------RKSMVQHYYRNVHAVV----------------FVYDM 103
Query: 121 VNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLR 156
N ASF ++ A W E + H P ILVG K DLR
Sbjct: 104 TNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLR 140
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 59/160 (36%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+PT+ + + + PI +WDTAGQE + LR
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ + +FD R VP
Sbjct: 80 YIQA--------------QCAII-------MFDVTSRVTYKNVPN--------------- 103
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
W+ ++ C + PI+L G K+D++D K
Sbjct: 104 -------------WHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 64/220 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
GK+CLL + N F + T+ + + V+ V GK + L +WDTAGQE R R ++
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE---RFRSVT 91
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y +A G V+D R
Sbjct: 92 RS--------------YYRGAA----GALLVYDITSRETY-------------------- 113
Query: 120 LVNPASFENVRAKWYPEVRH-HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N A W + R P+ +IL G K DL ++E +T+ +
Sbjct: 114 --------NSLAAWLTDARTLASPNIVVILCGNKKDLDPERE------------VTFLEA 153
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218
A+E + +LE SALT + ++ F + R +L + +
Sbjct: 154 SRFAQE-NELMFLETSALTGENVEEAFLKCARTILNKIDS 192
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+PT+ + + + PI +WDTAGQE + LR
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 80 YIQA--------------QCAI----------------------------------IMFD 91
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 92 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 57/158 (36%), Gaps = 51/158 (32%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKTCL + FP T+ D V +DG+ I + LWDTAGQE +
Sbjct: 40 VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF-------- 91
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+K + + + AV+ +
Sbjct: 92 -----------------------RKSMVQHYYRNVHAVV----------------FVYDX 112
Query: 121 VNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLR 156
N ASF ++ A W E + H P ILVG K DLR
Sbjct: 113 TNXASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLR 149
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 72/193 (37%), Gaps = 62/193 (32%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I + F EY PT+ D+Y + +D + L + DTAGQE++ +R Y +T
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMRE-QYMRT 89
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G D F I +S+ +
Sbjct: 90 G-----------------------------------------------DGFLIVYSVTDK 102
Query: 124 ASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
ASFE+V +R S P+ILV K+DL +T QG MA
Sbjct: 103 ASFEHVDRFHQLILRVKDRESFPMILVANKVDL------------MHLRKVTRDQGKEMA 150
Query: 183 KEIGAVKYLECSA 195
+ + Y+E SA
Sbjct: 151 TKYN-IPYIETSA 162
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
+VGK+ L I + F Y PT+ + ++ + V+G+ +L L DTAGQ++Y +
Sbjct: 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-----IF 70
Query: 61 PQT 63
PQT
Sbjct: 71 PQT 73
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 72/193 (37%), Gaps = 62/193 (32%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I + F +Y PT+ D+Y + +D + L + DTAGQE++ +R Y +T
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMRE-QYMRT 89
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G D F I +S+ +
Sbjct: 90 G-----------------------------------------------DGFLIVYSVTDK 102
Query: 124 ASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
ASFE+V +R S P+ILV K+DL +T QG MA
Sbjct: 103 ASFEHVDRFHQLILRVKDRESFPMILVANKVDL------------MHLRKVTRDQGKEMA 150
Query: 183 KEIGAVKYLECSA 195
+ + Y+E SA
Sbjct: 151 TKYN-IPYIETSA 162
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
+VGK+ L I + F Y PT+ + ++ + V+G+ +L L DTAGQ++Y +
Sbjct: 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-----IF 70
Query: 61 PQT 63
PQT
Sbjct: 71 PQT 73
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To
Gdp
Length = 169
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
+VGK+ L I + F Y PT+ + ++ + V+G+ +L L DTAGQ++Y +
Sbjct: 11 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-----IF 65
Query: 61 PQT 63
PQT
Sbjct: 66 PQT 68
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound
State
Length = 196
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED 51
VGK+ L++ + T F EY PT+ Y +D + +++ + DTAGQED
Sbjct: 38 GVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ ++ Y F +Y T+ D + V+ + + L LWDTAGQE++D +
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 74
Query: 60 Y 60
Y
Sbjct: 75 Y 75
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 63/208 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ +++ + +N F PT+ + + V ++ + +WDTAGQE + L P
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXY 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y ++ + +
Sbjct: 73 YRNAQAAL------------------------------------------------VVYD 84
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLD-LRDDKETIXXXXXXXXAPITYPQ 177
+ P SF R W E+ II LVG K+D L++ E + +
Sbjct: 85 VTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDXLQEGGER----------KVAREE 133
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVF 205
G +A+E G + + E SA T + + VF
Sbjct: 134 GEKLAEEKGLL-FFETSAKTGENVNDVF 160
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 72/193 (37%), Gaps = 62/193 (32%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63
K+ L I + F +Y PT+ D+Y + +D + L + DTAGQE++ +R Y +T
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMRE-QYMRT 84
Query: 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP 123
G D F I +S+ +
Sbjct: 85 G-----------------------------------------------DGFLIVYSVTDK 97
Query: 124 ASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQGLSMA 182
ASFE+V +R S P+ILV K+DL +T QG MA
Sbjct: 98 ASFEHVDRFHQLILRVKDRESFPMILVANKVDL------------MHLRKVTRDQGKEMA 145
Query: 183 KEIGAVKYLECSA 195
+ + Y+E SA
Sbjct: 146 TKYN-IPYIETSA 157
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE Y LR
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 80 YIQA--------------QCAI----------------------------------IMFD 91
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 92 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRL 55
VGKT L+ Y F +Y T+ ++ + VMVD + + + +WDTAG E + L
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSL 73
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp
Analogue
Length = 201
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKTCL+ +T FP G+ D V ++G+ + L +WDTAGQE +
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 88
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ + +FD R VP
Sbjct: 80 YIQA--------------QCAII-------MFDVTSRVTYKNVPN--------------- 103
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
W+ ++ C + PI+L G K+D++D K
Sbjct: 104 -------------WHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 80/220 (36%), Gaps = 64/220 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
GK+CLL + F + T+ + + ++ V GK + L +WDTAGQE R R ++
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE---RFRSVT 76
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y +A G V+D R
Sbjct: 77 RS--------------YYRGAA----GALLVYDITSRETY-------------------- 98
Query: 120 LVNPASFENVRAKWYPEVRH-HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N W + R + IIL G K DL D+E +T+ +
Sbjct: 99 --------NALTNWLTDARMLASQNIVIILCGNKKDLDADRE------------VTFLEA 138
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218
A+E + +LE SALT + ++ F + R +L + +
Sbjct: 139 SRFAQE-NELMFLETSALTGENVEEAFVQCARKILNKIES 177
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDY 52
+VGKTC++ + T AF T+ +++ + + GK + L +WDTAGQE +
Sbjct: 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF 91
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 13 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 73 YIQA--------------QCAI----------------------------------IMFD 84
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 85 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 123
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 80 YIQA--------------QCAI----------------------------------IMFD 91
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 92 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 51/163 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L+ N F T+ D ++VDG+ L LWDTAGQE R R ++
Sbjct: 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE---RFRSIA 94
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
K+ F ++ D + +
Sbjct: 95 ----------------------------KSYF-----------------RKADGVLLLYD 109
Query: 120 LVNPASFENVRAKWYPEVRHHCPST-PIILVGTKLDLRDDKET 161
+ SF N+R +W + T PI+LVG K D+RD T
Sbjct: 110 VTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAAT 151
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 80 YIQA--------------QCAI----------------------------------IMFD 91
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 92 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 85 YIQA--------------QCAI----------------------------------IMFD 96
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 97 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 75/219 (34%), Gaps = 64/219 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKT LL +T N F + T+ +S VM+ + +WDTAG E Y +
Sbjct: 20 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L + F
Sbjct: 80 YR----------GAVGAL--------------------------------------LVFD 91
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
L ++ V +W E+ H +T ++ LVG K DL +E P +
Sbjct: 92 LTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQARE----------VP---TEE 137
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
M E + +LE SAL ++ F+ ++ + V
Sbjct: 138 ARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 176
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 80 YIQA--------------QCAI----------------------------------IXFD 91
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 92 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 75/219 (34%), Gaps = 64/219 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKT LL +T N F + T+ +S VM+ + +WDTAG E Y +
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L + F
Sbjct: 95 YR----------GAVGAL--------------------------------------LVFD 106
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
L ++ V +W E+ H +T ++ LVG K DL +E P +
Sbjct: 107 LTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEAR- 154
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
M E + +LE SAL ++ F+ ++ + V
Sbjct: 155 --MFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
Length = 187
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTA 47
GK+ L + + T F EY P + D YS+ VD +P++L + DTA
Sbjct: 31 GAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA 77
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L Y + F ++ TV D V K + L +WDTAGQE Y +
Sbjct: 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAY 92
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA+ ++ + +
Sbjct: 93 YR----------GAMGFI--------------------------------------LMYD 104
Query: 120 LVNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF V+ W +++ + + +ILVG K D+ +++ + +G
Sbjct: 105 ITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEER------------VVPTEKG 151
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+++G + E SA ++ F+ + A+
Sbjct: 152 QLLAEQLG-FDFFEASAKENISVRQAFERLVDAI 184
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
+VGK+ L I + F PT+ + ++ + V+G+ +L L DTAGQ++Y +
Sbjct: 14 SVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-----IF 68
Query: 61 PQT 63
PQT
Sbjct: 69 PQT 71
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 78/215 (36%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
GK+CLL + F + T+ + + ++ V GK + L +WDTAGQE R R ++
Sbjct: 21 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE---RFRSVT 77
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y +A G V+D R
Sbjct: 78 RS--------------YYRGAA----GALLVYDITSRETY-------------------- 99
Query: 120 LVNPASFENVRAKWYPEVRH-HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N W + R + IIL G K DL D+E +T+ +
Sbjct: 100 --------NALTNWLTDARMLASQNIVIILCGNKKDLDADRE------------VTFLEA 139
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A+E + +LE SALT + ++ F + R +L
Sbjct: 140 SRFAQE-NELMFLETSALTGEDVEEAFVQCARKIL 173
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 59/159 (37%), Gaps = 52/159 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANV--MVDGKPINLGLWDTAGQEDYDRLRPL 58
VGK+ LL +T + F E T+ ++ + + K I +WDTAGQE Y +
Sbjct: 17 GVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSA 76
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y GAV L +T+K
Sbjct: 77 YYR----------GAVGALLVYDITKKN-------------------------------- 94
Query: 119 SLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLR 156
SFEN+ KW E+R + S +I LVG K DL+
Sbjct: 95 ------SFENIE-KWLKELRDNADSNIVILLVGNKSDLK 126
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 77/219 (35%), Gaps = 64/219 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +T N F + T+ ++ + ++GK I +WDTAGQE Y +
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L I +
Sbjct: 83 YR----------GAVGAL--------------------------------------IVYD 94
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ +S+EN W E+R + + + L+G K DL + +
Sbjct: 95 ISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDL------------AHLRAVPTEES 141
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
+ A+E + + E SAL + + F+E I + V
Sbjct: 142 KTFAQE-NQLLFTETSALNSENVDKAFEELINTIYQKVS 179
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 65/216 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L Y ++F ++ TV ++ + + K I L +WDTAG E Y +
Sbjct: 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAY 77
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA ++ + +
Sbjct: 78 YR----------GAXGFI--------------------------------------LXYD 89
Query: 120 LVNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ N SF V+ W +++ + + ++LVG K D D++ ++ +G
Sbjct: 90 ITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDXEDER------------VVSSERG 136
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214
+A +G ++ E SA +K F E + V+C
Sbjct: 137 RQLADHLG-FEFFEASAKDNINVKQTF-ERLVDVIC 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXX 169
D + I +S+ + ASFE ++ ++R PIILVG K DL +E
Sbjct: 82 DAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE--------- 131
Query: 170 XAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
++ +G + A + K++E SA Q +K +F+ +R V + K +R
Sbjct: 132 ---VSVSEGRAXAV-VFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNER 182
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + L
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 80 YIQA--------------QCAI----------------------------------IMFD 91
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 92 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAG E + LR
Sbjct: 22 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 81
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ + +FD R VP
Sbjct: 82 YIQA--------------QCAII-------MFDVTSRVTYKNVPN--------------- 105
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
W+ ++ C + PI+L G K+D++D K
Sbjct: 106 -------------WHRDLVRVCENIPIVLCGNKVDIKDRK 132
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAG E + LR
Sbjct: 16 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 75
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 76 YIQA--------------QCAI----------------------------------IMFD 87
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 88 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 126
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L++ + F T+ + + +V +D + +WDTAGQE Y L P+
Sbjct: 18 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMY 77
Query: 60 Y 60
Y
Sbjct: 78 Y 78
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L++ + F T+ + + V +D + +WDTAGQE Y L P+
Sbjct: 13 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 72
Query: 60 Y 60
Y
Sbjct: 73 Y 73
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L++ + F T+ + + V +D + +WDTAGQE Y L P+
Sbjct: 15 AVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 74
Query: 60 Y 60
Y
Sbjct: 75 Y 75
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXX 169
D + I +S+ + ASFE ++ ++R PIILVG K DL +E
Sbjct: 82 DAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE--------- 131
Query: 170 XAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
++ +G + A + K++E SA Q +K +F+ +R V + K +R
Sbjct: 132 ---VSVSEGRAXAV-VFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNER 182
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAG E + LR
Sbjct: 20 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 80 YIQA--------------QCAI----------------------------------IMFD 91
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 92 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 66/208 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L++ + F T+ + + V +D + +WDTAGQE Y L P+
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y R + + +
Sbjct: 76 Y-----------------------------------RGAQAAI-------------VVYD 87
Query: 120 LVNPASFENVRAK-WYPEV-RHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQ 177
+ N SF RAK W E+ R P+ I L G K DL + + + + +
Sbjct: 88 ITNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKR------------AVDFQE 133
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVF 205
S A + ++ ++E SA T + +F
Sbjct: 134 AQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 66/208 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L++ + F T+ + + V +D + +WDTAGQE Y L P+
Sbjct: 17 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 76
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y R + + +
Sbjct: 77 Y-----------------------------------RGAQAAI-------------VVYD 88
Query: 120 LVNPASFENVRAK-WYPEV-RHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQ 177
+ N SF RAK W E+ R P+ I L G K DL + + + + +
Sbjct: 89 ITNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKR------------AVDFQE 134
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVF 205
S A + ++ ++E SA T + +F
Sbjct: 135 AQSYADD-NSLLFMETSAKTSMNVNEIF 161
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ L++ + F YIPTV D Y + D L + DT G + ++ LS
Sbjct: 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLS 71
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 25 GTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q +C+ I F
Sbjct: 85 YIQA--------------QCAI----------------------------------IMFD 96
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 97 VTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 77/215 (35%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
GK+CLL + F + T+ + + ++ V GK + L +WDTAG E R R ++
Sbjct: 18 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE---RFRSVT 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y +A G V+D R
Sbjct: 75 RS--------------YYRGAA----GALLVYDITSRETY-------------------- 96
Query: 120 LVNPASFENVRAKWYPEVRH-HCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N W + R + IIL G K DL D+E +T+ +
Sbjct: 97 --------NALTNWLTDARMLASQNIVIILCGNKKDLDADRE------------VTFLEA 136
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A+E + +LE SALT + ++ F + R +L
Sbjct: 137 SRFAQE-NELMFLETSALTGEDVEEAFVQCARKIL 170
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 66/207 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F T+ + + V +D + +WDTAGQE Y L P+ Y
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
R + + + +
Sbjct: 77 -----------------------------------RGAQAAI-------------VVYDI 88
Query: 121 VNPASFENVRAK-WYPEV-RHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N SF RAK W E+ R P+ I L G K DL + + + + +
Sbjct: 89 TNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKR------------AVDFQEA 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
S A + ++ ++E SA T + +F
Sbjct: 135 QSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 66/207 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F T+ + + V +D + +WDTAGQE Y L P+ Y
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
R + + + +
Sbjct: 77 -----------------------------------RGAQAAI-------------VVYDI 88
Query: 121 VNPASFENVRAK-WYPEV-RHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N SF RAK W E+ R P+ I L G K DL + + + + +
Sbjct: 89 TNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKR------------AVDFQEA 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
S A + ++ ++E SA T + +F
Sbjct: 135 QSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 66/207 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F T+ + + V +D + +WDTAGQE Y L P+ Y
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
R + + + +
Sbjct: 77 -----------------------------------RGAQAAI-------------VVYDI 88
Query: 121 VNPASFENVRAK-WYPEV-RHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N SF RAK W E+ R P+ I L G K DL + + + + +
Sbjct: 89 TNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKR------------AVDFQEA 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
S A + ++ ++E SA T + +F
Sbjct: 135 QSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 74/219 (33%), Gaps = 64/219 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +TT+ F E T+ ++ + V+ K I +WDTAG E Y +
Sbjct: 20 GVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAY 79
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GAV L I +
Sbjct: 80 YR----------GAVGAL--------------------------------------IVYD 91
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
+ +S+EN W E+R + + + L+G K DL P +
Sbjct: 92 ISKSSSYENCN-HWLTELRENADDNVAVGLIGNKSDL----------AHLRAVPTDEAKN 140
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
+M ++ + E SAL + F E I A+ V
Sbjct: 141 FAMENQM---LFTETSALNSDNVDKAFRELIVAIFQMVS 176
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 66/207 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F T+ + + V +D + +WDTAGQE Y L P+ Y
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
R + + + +
Sbjct: 77 -----------------------------------RGAQAAI-------------VVYDI 88
Query: 121 VNPASFENVRAK-WYPEV-RHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXAPITYPQG 178
N SF RAK W E+ R P+ I L G K DL + + + + +
Sbjct: 89 TNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKR------------AVDFQEA 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
S A + ++ ++E SA T + +F
Sbjct: 135 QSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L++ + F T+ + + V +D + +WDTAGQE Y L P
Sbjct: 17 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXY 76
Query: 60 Y 60
Y
Sbjct: 77 Y 77
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F T+ + + V +D + +WDTAGQE Y L P+ Y
Sbjct: 17 VGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYY 76
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 28/109 (25%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVR--------HHCPSTPIILVGTKLDLRDDKETIX 163
D F I FS+ + SF V PE HH P+ILVG K DL +E
Sbjct: 98 DAFLIVFSVTDRRSFSKV-----PETLLRLRAGRPHH--DLPVILVGNKSDLARSRE--- 147
Query: 164 XXXXXXXAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++ +G +A + + K++E SA + +F+ A+R +
Sbjct: 148 ---------VSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 28/109 (25%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVR--------HHCPSTPIILVGTKLDLRDDKETIX 163
D F I FS+ + SF V PE HH P+ILVG K DL +E
Sbjct: 87 DAFLIVFSVTDRRSFSKV-----PETLLRLRAGRPHH--DLPVILVGNKSDLARSRE--- 136
Query: 164 XXXXXXXAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++ +G +A + + K++E SA + +F+ A+R +
Sbjct: 137 ---------VSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 28/109 (25%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVR--------HHCPSTPIILVGTKLDLRDDKETIX 163
D F I FS+ + SF V PE HH P+ILVG K DL +E
Sbjct: 77 DAFLIVFSVTDRRSFSKV-----PETLLRLRAGRPHH--DLPVILVGNKSDLARSRE--- 126
Query: 164 XXXXXXXAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++ +G +A + + K++E SA + +F+ A+R +
Sbjct: 127 ---------VSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L++ + F T+ + + V +D + +WDTAG E Y L P+
Sbjct: 15 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMY 74
Query: 60 Y 60
Y
Sbjct: 75 Y 75
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
Length = 168
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L++ + F T+ + + V +D + +WDTAG E Y L P+
Sbjct: 15 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMY 74
Query: 60 Y 60
Y
Sbjct: 75 Y 75
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPIN-LGLWDTAGQEDYDRLRPLS 59
VGK+ ++ + + F PT+ ++ + G ++ +WDTAGQE + L P+
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY 92
Query: 60 Y 60
Y
Sbjct: 93 Y 93
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +YI T+ + + + + I +WDTAG E + LR
Sbjct: 15 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGY 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y +C+ + +FD R VP
Sbjct: 75 YINA--------------QCAII-------MFDVTSRITYKNVPN--------------- 98
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
W+ ++ C + PI+L G K+D+++ K
Sbjct: 99 -------------WHRDLVRVCENIPIVLCGNKVDVKERK 125
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +YI T+ + + + + I +WDTAG E + LR
Sbjct: 14 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGY 73
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y +C+ + +FD R VP
Sbjct: 74 YINA--------------QCAII-------MFDVTSRITYKNVPN--------------- 97
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
W+ ++ C + PI+L G K+D+++ K
Sbjct: 98 -------------WHRDLVRVCENIPIVLCGNKVDVKERK 124
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXX 169
D + I +S+ + ASFE ++ ++R PIILVG K DL +E
Sbjct: 82 DAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE--------- 131
Query: 170 XAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++ +G + A + K++E SA Q +K +F+ +R V
Sbjct: 132 ---VSVSEGRACAV-VFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXX 169
D + I +S+ + ASFE ++ ++R PIILVG K DL +E
Sbjct: 113 DAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE--------- 162
Query: 170 XAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++ +G + A + K++E SA Q +K +F+ +R V
Sbjct: 163 ---VSVSEGRACAV-VFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 51/164 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ ++ + ++F PT+ ++ + V + +WDTAGQE + L P+
Sbjct: 15 GVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMY 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + ++ I +
Sbjct: 75 YRGSAAAI------------------------------------------------IVYD 86
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETI 162
+ +F ++ W E+R H PS + + G K DL D +E +
Sbjct: 87 ITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVREVM 129
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
K+ L++ + F YIPT+ D Y + D L + DT G + ++ LS
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLS 76
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +YI T+ + + + + I +WDTAG E + LR
Sbjct: 22 GTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGY 81
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y I A +C + I F
Sbjct: 82 Y----------------------------------INA------------QCAI--IMFD 93
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+L G K+D+++ K
Sbjct: 94 VTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKERK 132
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 133 WYPEVRHHCPSTPIILVGTKLDLRDDKE 160
W ++ S+P+ILVGT LD+ D+K+
Sbjct: 102 WLFNIKARASSSPVILVGTHLDVSDEKQ 129
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 133 WYPEVRHHCPSTPIILVGTKLDLRDDKE 160
W ++ S+P+ILVGT LD+ D+K+
Sbjct: 100 WLFNIKARASSSPVILVGTHLDVSDEKQ 127
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 21 IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
I +NY+ N+ I +WDTAGQE Y + PL Y
Sbjct: 79 ITNQHNNYNENLC----NIKFDIWDTAGQERYASIVPLYY 114
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 51/164 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ ++ + ++F PT+ ++ + V + +WDTAG E + L P+
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 75
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + ++ I +
Sbjct: 76 YRGSAAAI------------------------------------------------IVYD 87
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETI 162
+ +F ++ W E+R H PS + + G K DL D +E +
Sbjct: 88 ITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVREVM 130
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXX 169
D + I +S+ + SFE ++ ++R PIILVG K DL +E
Sbjct: 74 DAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE--------- 123
Query: 170 XAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++ +G + A + K++E SA ++ +F+ +R +
Sbjct: 124 ---VSVDEGRACAV-VFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXX 169
D + I +S+ + SFE ++ ++R PIILVG K DL +E
Sbjct: 79 DAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE--------- 128
Query: 170 XAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++ +G + A + K++E SA ++ +F+ +R +
Sbjct: 129 ---VSVDEGRACAV-VFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIXXXXXXX 169
D + I +S+ + SFE ++ ++R PIILVG K DL +E
Sbjct: 79 DAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE--------- 128
Query: 170 XAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++ +G + A + K++E SA ++ +F+ +R +
Sbjct: 129 ---VSVDEGRACAV-VFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 114 FQICFSLVNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIXXXXXXXXA 171
+ I +S+ + SFE+ ++ ++R H PIILVG K DL +E
Sbjct: 81 YVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------- 128
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFD 206
++ +G + A + K++E SA Q + +F+
Sbjct: 129 -VSVEEGRACAV-VFDCKFIETSATLQHNVAELFE 161
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVD-GKPINLGLWDTAGQEDYDRLRPL 58
VGKT + F Y TV N+ + D G I +WDTAGQE L+ +
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80
Query: 59 SY 60
Y
Sbjct: 81 YY 82
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDE 93
VDGKP+ + DTAGQ+ + ++ G+ + IG + C L + +E
Sbjct: 251 VDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTL-IGEAVFARC-------LSALKNE 302
Query: 94 AIRAV-LCPVPTVPKKKRCDVFQICFSL 120
IRA + P P VPK D Q L
Sbjct: 303 RIRASKVLPGPEVPKDAVKDREQFVDDL 330
>pdb|2IZV|A Chain A, Crystal Structure Of Socs-4 In Complex With Elongin-B
And Elongin-C At 2.55a Resolution
Length = 187
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 24 VFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEI 71
V D Y+A +++GKP L + QEDY L +S+ + S+ I
Sbjct: 40 VMDKYAAEALLEGKPEGTFLLRDSAQEDY--LFSVSFRRYSRSLHARI 85
>pdb|3TC3|A Chain A, Crystal Structure Of Sacuvde
pdb|3TC3|B Chain B, Crystal Structure Of Sacuvde
pdb|4GLE|A Chain A, Sacuvde In Complex With 6-4pp-containing Dna
Length = 310
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 4 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGL------WDTAGQEDYDRLRP 57
K CL IS T IP +FDN +++ +G+ +N L W DY P
Sbjct: 204 KDCLWISERTG------IPVIFDNLHHSILNNGESLNDALSLVRRTWKDRPMIDYSEQEP 257
Query: 58 LSYP 61
P
Sbjct: 258 GEKP 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,642,534
Number of Sequences: 62578
Number of extensions: 257635
Number of successful extensions: 967
Number of sequences better than 100.0: 293
Number of HSP's better than 100.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 544
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)