Query psy8274
Match_columns 228
No_of_seqs 114 out of 1134
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 23:17:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01875 RhoG RhoG subfamily. 100.0 1.6E-36 3.5E-41 244.1 19.3 179 1-228 13-191 (191)
2 KOG0084|consensus 100.0 4.7E-37 1E-41 240.4 14.1 156 1-217 19-176 (205)
3 cd04134 Rho3 Rho3 subfamily. 100.0 3.5E-34 7.7E-39 230.0 20.0 180 1-228 10-189 (189)
4 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.8E-34 4E-39 230.6 18.0 166 1-214 15-181 (182)
5 KOG0092|consensus 100.0 1.1E-34 2.5E-39 226.2 15.0 156 1-218 15-172 (200)
6 cd04131 Rnd Rnd subfamily. Th 100.0 6.6E-34 1.4E-38 226.6 18.6 165 1-213 11-176 (178)
7 KOG0078|consensus 100.0 1E-34 2.2E-39 230.0 13.5 155 1-217 22-178 (207)
8 KOG0098|consensus 100.0 5.6E-35 1.2E-39 226.5 10.5 155 1-217 16-172 (216)
9 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 9.6E-34 2.1E-38 232.8 18.1 169 1-217 11-180 (222)
10 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 9.9E-34 2.2E-38 233.9 17.0 167 1-215 23-190 (232)
11 cd04133 Rop_like Rop subfamily 100.0 1.9E-33 4E-38 223.6 17.8 164 1-214 11-174 (176)
12 KOG0393|consensus 100.0 9.4E-34 2E-38 225.2 15.3 169 1-217 14-183 (198)
13 KOG0094|consensus 100.0 7.6E-34 1.6E-38 221.8 13.7 153 1-215 32-187 (221)
14 KOG0079|consensus 100.0 2.1E-34 4.5E-39 215.6 9.9 154 1-216 18-172 (198)
15 KOG0080|consensus 100.0 6E-34 1.3E-38 215.8 11.9 152 1-214 21-175 (209)
16 cd01874 Cdc42 Cdc42 subfamily. 100.0 8E-33 1.7E-37 219.6 18.5 165 1-213 11-175 (175)
17 cd04121 Rab40 Rab40 subfamily. 100.0 6.7E-33 1.5E-37 222.8 16.5 155 1-217 16-171 (189)
18 cd01871 Rac1_like Rac1-like su 100.0 2.2E-32 4.7E-37 217.0 18.1 163 1-211 11-173 (174)
19 smart00174 RHO Rho (Ras homolo 100.0 6.2E-32 1.3E-36 213.1 19.0 166 1-214 8-173 (174)
20 cd04120 Rab12 Rab12 subfamily. 100.0 2.2E-32 4.7E-37 222.0 16.4 153 1-215 10-165 (202)
21 KOG0394|consensus 100.0 6.9E-33 1.5E-37 214.5 12.2 157 1-216 19-181 (210)
22 cd04144 Ras2 Ras2 subfamily. 100.0 3.9E-32 8.5E-37 218.2 14.8 166 1-228 9-190 (190)
23 KOG0093|consensus 100.0 1.1E-32 2.5E-37 206.1 10.5 157 1-219 31-189 (193)
24 cd04132 Rho4_like Rho4-like su 100.0 1.4E-31 3E-36 213.8 16.8 172 1-228 10-187 (187)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.8E-31 1E-35 208.8 15.5 153 1-215 12-166 (172)
26 cd04130 Wrch_1 Wrch-1 subfamil 100.0 5E-30 1.1E-34 202.6 18.9 163 1-211 10-172 (173)
27 KOG0087|consensus 100.0 4.4E-31 9.4E-36 208.8 12.6 152 1-214 24-177 (222)
28 cd04135 Tc10 TC10 subfamily. 100.0 6.7E-30 1.5E-34 201.5 19.3 165 1-213 10-174 (174)
29 PTZ00369 Ras-like protein; Pro 100.0 3.1E-30 6.6E-35 207.0 15.5 166 1-228 15-189 (189)
30 smart00176 RAN Ran (Ras-relate 100.0 7.2E-30 1.6E-34 206.9 16.5 151 1-215 5-156 (200)
31 cd04110 Rab35 Rab35 subfamily. 100.0 1.1E-29 2.5E-34 205.4 16.4 153 1-215 16-169 (199)
32 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 8.8E-30 1.9E-34 206.3 15.6 155 1-216 10-171 (201)
33 cd04136 Rap_like Rap-like subf 100.0 1E-29 2.2E-34 197.9 15.4 150 1-212 11-162 (163)
34 KOG0086|consensus 100.0 1.2E-30 2.5E-35 196.6 9.5 155 1-217 19-175 (214)
35 KOG0091|consensus 100.0 7.2E-31 1.6E-35 199.6 8.3 151 2-214 19-174 (213)
36 cd01873 RhoBTB RhoBTB subfamil 100.0 1.9E-29 4.1E-34 203.7 16.8 160 1-211 12-194 (195)
37 cd04122 Rab14 Rab14 subfamily. 100.0 1.5E-29 3.2E-34 198.4 15.5 152 1-214 12-165 (166)
38 KOG0083|consensus 100.0 6E-31 1.3E-35 194.1 6.8 156 1-218 7-165 (192)
39 cd01870 RhoA_like RhoA-like su 100.0 5.9E-29 1.3E-33 196.3 18.6 164 1-212 11-174 (175)
40 cd04175 Rap1 Rap1 subgroup. T 100.0 1.8E-29 3.9E-34 197.3 15.3 151 1-213 11-163 (164)
41 PF00071 Ras: Ras family; Int 100.0 1.4E-29 3.1E-34 197.2 14.2 151 1-213 9-161 (162)
42 cd04117 Rab15 Rab15 subfamily. 100.0 3.8E-29 8.2E-34 195.6 16.0 149 1-211 10-160 (161)
43 cd04109 Rab28 Rab28 subfamily. 100.0 5.9E-29 1.3E-33 203.6 16.8 152 1-214 10-167 (215)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.9E-29 1.3E-33 198.7 16.3 159 1-217 10-170 (182)
45 KOG0095|consensus 100.0 4.8E-30 1E-34 192.6 9.0 151 1-213 17-169 (213)
46 cd04126 Rab20 Rab20 subfamily. 100.0 6.4E-29 1.4E-33 204.0 16.5 160 1-213 10-190 (220)
47 cd04129 Rho2 Rho2 subfamily. 100.0 1.8E-28 3.9E-33 196.4 18.2 176 1-227 11-186 (187)
48 PLN03071 GTP-binding nuclear p 100.0 9.3E-29 2E-33 203.1 16.4 151 1-215 23-174 (219)
49 cd04103 Centaurin_gamma Centau 100.0 8.9E-29 1.9E-33 193.4 15.1 146 1-211 10-157 (158)
50 KOG0088|consensus 100.0 5.5E-30 1.2E-34 193.9 7.9 152 2-215 24-177 (218)
51 KOG0395|consensus 100.0 6.9E-29 1.5E-33 200.2 14.2 154 1-216 13-168 (196)
52 cd04176 Rap2 Rap2 subgroup. T 100.0 1.4E-28 3E-33 192.0 15.5 150 1-212 11-162 (163)
53 cd04125 RabA_like RabA-like su 100.0 1.7E-28 3.6E-33 196.5 16.3 153 1-215 10-164 (188)
54 cd04140 ARHI_like ARHI subfami 100.0 1.6E-28 3.4E-33 192.5 15.3 148 1-210 11-162 (165)
55 KOG0081|consensus 100.0 8.1E-30 1.8E-34 193.1 7.4 153 1-215 19-183 (219)
56 cd01865 Rab3 Rab3 subfamily. 100.0 2.3E-28 5E-33 191.6 16.0 151 1-213 11-163 (165)
57 cd01867 Rab8_Rab10_Rab13_like 100.0 1.7E-28 3.8E-33 192.6 15.2 152 1-214 13-166 (167)
58 cd04127 Rab27A Rab27a subfamil 100.0 1.5E-28 3.3E-33 194.8 14.5 152 1-214 14-178 (180)
59 cd04112 Rab26 Rab26 subfamily. 100.0 3.2E-28 6.8E-33 195.6 16.1 154 1-216 10-166 (191)
60 cd00877 Ran Ran (Ras-related n 100.0 4.9E-28 1.1E-32 190.4 16.8 150 1-214 10-160 (166)
61 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3E-28 6.4E-33 190.8 15.4 151 1-213 12-164 (166)
62 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.2E-28 6.9E-33 192.3 15.3 153 1-213 10-165 (170)
63 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.7E-28 8E-33 188.4 15.3 149 1-212 11-161 (162)
64 cd04119 RJL RJL (RabJ-Like) su 100.0 3.3E-28 7.2E-33 189.7 15.1 151 1-213 10-167 (168)
65 smart00173 RAS Ras subfamily o 100.0 3.7E-28 8.1E-33 189.6 15.0 151 1-213 10-162 (164)
66 KOG0097|consensus 100.0 5E-29 1.1E-33 185.7 9.4 155 1-217 21-177 (215)
67 cd04143 Rhes_like Rhes_like su 100.0 6.5E-28 1.4E-32 201.4 16.6 156 1-217 10-175 (247)
68 cd04116 Rab9 Rab9 subfamily. 100.0 7.3E-28 1.6E-32 189.3 15.7 149 1-211 15-169 (170)
69 cd04124 RabL2 RabL2 subfamily. 100.0 1.1E-27 2.3E-32 187.3 16.4 151 1-216 10-161 (161)
70 cd04106 Rab23_lke Rab23-like s 100.0 6.2E-28 1.4E-32 187.8 14.9 149 1-211 10-161 (162)
71 cd04142 RRP22 RRP22 subfamily. 100.0 1.9E-27 4.1E-32 192.5 17.9 165 1-219 10-180 (198)
72 cd01864 Rab19 Rab19 subfamily. 100.0 1.2E-27 2.7E-32 187.2 15.2 150 1-211 13-164 (165)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.3E-27 2.9E-32 186.1 15.3 150 1-212 12-163 (164)
74 cd04177 RSR1 RSR1 subgroup. R 100.0 2.4E-27 5.3E-32 186.3 16.1 152 1-213 11-164 (168)
75 cd04146 RERG_RasL11_like RERG/ 100.0 1.6E-27 3.4E-32 186.6 14.4 151 1-213 9-164 (165)
76 cd01868 Rab11_like Rab11-like. 100.0 2.5E-27 5.3E-32 185.3 15.3 150 1-212 13-164 (165)
77 cd01892 Miro2 Miro2 subfamily. 100.0 2.3E-27 4.9E-32 187.2 15.1 153 1-215 14-168 (169)
78 cd04111 Rab39 Rab39 subfamily. 100.0 2.5E-27 5.4E-32 193.6 15.1 153 1-215 12-168 (211)
79 cd01866 Rab2 Rab2 subfamily. 100.0 4.5E-27 9.7E-32 184.9 15.5 152 1-214 14-167 (168)
80 cd04118 Rab24 Rab24 subfamily. 99.9 8.9E-27 1.9E-31 187.0 17.3 156 1-214 10-167 (193)
81 cd04113 Rab4 Rab4 subfamily. 99.9 4.8E-27 1E-31 182.9 15.0 150 1-212 10-161 (161)
82 cd00157 Rho Rho (Ras homology) 99.9 1.3E-26 2.8E-31 181.8 17.4 161 1-210 10-170 (171)
83 PLN03110 Rab GTPase; Provision 99.9 3.9E-27 8.5E-32 193.0 14.7 152 1-214 22-175 (216)
84 cd04115 Rab33B_Rab33A Rab33B/R 99.9 9.7E-27 2.1E-31 183.3 15.6 150 1-212 12-168 (170)
85 PLN03108 Rab family protein; P 99.9 9.9E-27 2.1E-31 189.9 15.1 154 1-216 16-171 (210)
86 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.8E-26 3.9E-31 180.1 15.0 151 1-213 10-164 (164)
87 cd04148 RGK RGK subfamily. Th 99.9 2.3E-26 4.9E-31 189.2 16.2 150 1-214 10-164 (221)
88 cd04137 RheB Rheb (Ras Homolog 99.9 4.9E-26 1.1E-30 180.6 14.9 166 1-228 11-180 (180)
89 smart00175 RAB Rab subfamily o 99.9 7.6E-26 1.6E-30 176.0 15.4 152 1-214 10-163 (164)
90 cd01860 Rab5_related Rab5-rela 99.9 8.4E-26 1.8E-30 175.9 15.3 150 1-212 11-162 (163)
91 cd01861 Rab6 Rab6 subfamily. 99.9 8.3E-26 1.8E-30 175.6 15.1 149 1-211 10-160 (161)
92 cd01862 Rab7 Rab7 subfamily. 99.9 1.3E-25 2.8E-30 176.2 15.8 154 1-215 10-169 (172)
93 cd04139 RalA_RalB RalA/RalB su 99.9 2E-25 4.3E-30 173.5 15.5 151 1-213 10-162 (164)
94 cd01863 Rab18 Rab18 subfamily. 99.9 3.3E-25 7.2E-30 172.4 16.2 148 1-211 10-160 (161)
95 cd04123 Rab21 Rab21 subfamily. 99.9 3.5E-25 7.7E-30 171.6 15.9 151 1-213 10-162 (162)
96 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4E-26 8.7E-31 179.2 9.0 149 1-210 9-163 (164)
97 PLN03118 Rab family protein; P 99.9 6.1E-25 1.3E-29 179.2 16.0 153 1-215 24-179 (211)
98 cd01893 Miro1 Miro1 subfamily. 99.9 5.1E-25 1.1E-29 172.8 14.9 155 1-214 10-165 (166)
99 cd00876 Ras Ras family. The R 99.9 4.6E-25 1E-29 170.6 13.6 150 1-212 9-160 (160)
100 PTZ00099 rab6; Provisional 99.9 1.6E-24 3.5E-29 172.2 15.7 140 13-214 2-143 (176)
101 cd04147 Ras_dva Ras-dva subfam 99.9 1.8E-24 3.9E-29 174.8 15.9 153 1-214 9-164 (198)
102 cd04158 ARD1 ARD1 subfamily. 99.9 6.4E-25 1.4E-29 172.9 12.5 148 1-215 9-163 (169)
103 cd04149 Arf6 Arf6 subfamily. 99.9 3.7E-25 8.1E-30 174.4 10.9 143 1-210 19-167 (168)
104 PLN00223 ADP-ribosylation fact 99.9 4.8E-25 1E-29 175.9 11.5 144 1-214 27-179 (181)
105 cd04114 Rab30 Rab30 subfamily. 99.9 3.2E-24 7E-29 168.1 15.8 151 1-213 17-169 (169)
106 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.2E-24 2.6E-29 169.8 11.4 142 1-210 10-158 (159)
107 smart00177 ARF ARF-like small 99.9 2.8E-24 6E-29 170.5 12.5 145 1-213 23-174 (175)
108 PTZ00132 GTP-binding nuclear p 99.9 1.3E-23 2.8E-28 171.8 16.5 151 1-215 19-170 (215)
109 PTZ00133 ADP-ribosylation fact 99.9 2.3E-24 4.9E-29 172.1 11.7 146 1-214 27-179 (182)
110 cd00154 Rab Rab family. Rab G 99.9 1.7E-23 3.7E-28 160.8 13.9 147 1-209 10-158 (159)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 8E-24 1.7E-28 169.0 11.4 153 1-217 13-174 (183)
112 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.9E-23 4.2E-28 169.4 12.4 137 1-199 10-176 (202)
113 cd04157 Arl6 Arl6 subfamily. 99.9 1.5E-23 3.3E-28 162.8 10.6 146 1-210 9-161 (162)
114 cd04161 Arl2l1_Arl13_like Arl2 99.9 6.1E-24 1.3E-28 167.2 8.3 149 1-210 9-166 (167)
115 cd04154 Arl2 Arl2 subfamily. 99.9 5.1E-23 1.1E-27 162.5 12.0 142 1-210 24-172 (173)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.6E-22 3.6E-27 160.0 11.5 142 1-210 25-173 (174)
117 PLN00023 GTP-binding protein; 99.9 2.9E-22 6.3E-27 171.2 12.9 132 1-190 31-192 (334)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.9 3.6E-22 7.8E-27 155.1 11.7 143 1-210 9-159 (160)
119 cd04151 Arl1 Arl1 subfamily. 99.9 3.4E-22 7.4E-27 155.3 11.3 143 1-210 9-157 (158)
120 cd04160 Arfrp1 Arfrp1 subfamil 99.9 6E-22 1.3E-26 154.9 11.2 144 1-210 9-166 (167)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.9 8.8E-22 1.9E-26 152.7 11.9 142 1-210 9-157 (158)
122 cd00879 Sar1 Sar1 subfamily. 99.9 1E-21 2.2E-26 157.2 12.6 144 1-211 29-189 (190)
123 KOG4252|consensus 99.9 9.3E-24 2E-28 163.2 0.5 153 1-215 30-183 (246)
124 COG1100 GTPase SAR1 and relate 99.9 7E-21 1.5E-25 155.5 13.4 169 1-217 15-189 (219)
125 smart00178 SAR Sar1p-like memb 99.9 2.9E-21 6.3E-26 154.4 10.8 144 1-211 27-183 (184)
126 cd04159 Arl10_like Arl10-like 99.9 5.1E-21 1.1E-25 147.1 11.4 148 1-210 9-158 (159)
127 cd01890 LepA LepA subfamily. 99.9 9.8E-21 2.1E-25 149.7 12.5 147 1-213 10-177 (179)
128 PF00025 Arf: ADP-ribosylation 99.8 7.7E-21 1.7E-25 150.9 11.0 144 1-212 24-175 (175)
129 cd01897 NOG NOG1 is a nucleola 99.8 3.9E-20 8.4E-25 144.7 13.6 155 1-213 10-168 (168)
130 TIGR02528 EutP ethanolamine ut 99.8 6E-21 1.3E-25 145.6 8.1 78 112-209 64-141 (142)
131 KOG0070|consensus 99.8 4.8E-20 1E-24 143.7 9.8 147 1-214 27-179 (181)
132 cd01898 Obg Obg subfamily. Th 99.8 3.2E-19 7E-24 139.6 13.0 85 112-211 80-169 (170)
133 KOG0073|consensus 99.8 3.8E-19 8.3E-24 135.7 12.0 152 1-214 26-179 (185)
134 TIGR00231 small_GTP small GTP- 99.8 6.5E-19 1.4E-23 134.5 13.2 146 1-208 11-159 (161)
135 cd04155 Arl3 Arl3 subfamily. 99.8 2.3E-19 5E-24 141.1 10.9 140 1-210 24-172 (173)
136 cd01879 FeoB Ferrous iron tran 99.8 1.1E-18 2.4E-23 134.8 13.7 150 1-212 6-156 (158)
137 cd04171 SelB SelB subfamily. 99.8 4.3E-19 9.3E-24 137.7 11.1 143 1-210 10-163 (164)
138 PRK12299 obgE GTPase CgtA; Rev 99.8 3.9E-18 8.5E-23 148.1 16.7 159 1-215 168-330 (335)
139 cd00882 Ras_like_GTPase Ras-li 99.8 2.2E-18 4.8E-23 130.0 13.3 147 1-209 6-156 (157)
140 KOG3883|consensus 99.8 2.4E-18 5.1E-23 130.1 13.2 156 1-218 19-180 (198)
141 cd01894 EngA1 EngA1 subfamily. 99.8 4.4E-18 9.6E-23 131.0 12.6 149 1-212 7-157 (157)
142 cd01881 Obg_like The Obg-like 99.8 4.5E-18 9.8E-23 133.6 12.7 154 1-211 6-175 (176)
143 KOG0075|consensus 99.8 7.3E-19 1.6E-23 132.0 7.1 152 1-213 30-182 (186)
144 KOG0096|consensus 99.8 6.2E-19 1.3E-23 137.6 6.9 150 1-214 20-170 (216)
145 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 7.9E-18 1.7E-22 131.3 12.8 150 1-213 10-166 (168)
146 PRK04213 GTP-binding protein; 99.8 1.8E-18 3.9E-23 139.7 8.5 146 1-214 19-193 (201)
147 cd01878 HflX HflX subfamily. 99.8 4.4E-18 9.6E-23 137.7 10.8 151 1-212 51-204 (204)
148 KOG1673|consensus 99.8 1.2E-17 2.6E-22 126.6 11.6 156 2-216 31-189 (205)
149 PRK03003 GTP-binding protein D 99.8 5.6E-18 1.2E-22 153.8 11.6 160 1-213 221-382 (472)
150 KOG4423|consensus 99.7 2E-19 4.3E-24 140.0 0.9 158 1-218 35-199 (229)
151 TIGR02729 Obg_CgtA Obg family 99.7 7.7E-17 1.7E-21 139.8 16.6 155 1-212 167-328 (329)
152 cd01891 TypA_BipA TypA (tyrosi 99.7 8E-18 1.7E-22 135.4 9.4 151 1-215 12-190 (194)
153 PF08477 Miro: Miro-like prote 99.7 1E-17 2.2E-22 123.9 8.2 106 1-154 9-119 (119)
154 cd00881 GTP_translation_factor 99.7 2.4E-17 5.2E-22 130.8 10.7 151 1-213 9-187 (189)
155 KOG0071|consensus 99.7 1.9E-17 4.2E-22 123.4 8.8 151 1-213 27-178 (180)
156 TIGR03594 GTPase_EngA ribosome 99.7 5.5E-17 1.2E-21 145.5 13.5 161 1-213 182-344 (429)
157 PRK15494 era GTPase Era; Provi 99.7 5.6E-17 1.2E-21 141.4 12.8 152 1-214 62-217 (339)
158 TIGR00436 era GTP-binding prot 99.7 6.6E-17 1.4E-21 136.8 12.7 153 1-214 10-165 (270)
159 PRK03003 GTP-binding protein D 99.7 3.6E-17 7.8E-22 148.5 11.5 151 1-214 48-200 (472)
160 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1E-16 2.2E-21 144.0 13.6 147 1-214 213-361 (442)
161 TIGR01393 lepA GTP-binding pro 99.7 7.9E-17 1.7E-21 149.5 12.8 150 1-216 13-183 (595)
162 PRK15467 ethanolamine utilizat 99.7 4.9E-17 1.1E-21 127.0 9.0 82 112-214 66-148 (158)
163 TIGR00487 IF-2 translation ini 99.7 3.3E-16 7.2E-21 144.9 15.2 140 1-211 97-248 (587)
164 TIGR03156 GTP_HflX GTP-binding 99.7 1.2E-16 2.6E-21 139.8 11.5 150 1-211 199-350 (351)
165 PRK12297 obgE GTPase CgtA; Rev 99.7 1.2E-15 2.6E-20 136.0 17.5 155 1-215 168-329 (424)
166 KOG0072|consensus 99.7 7E-17 1.5E-21 121.0 8.0 152 1-214 28-180 (182)
167 PRK05291 trmE tRNA modificatio 99.7 2E-16 4.4E-21 142.6 11.8 145 1-214 225-371 (449)
168 PRK00093 GTP-binding protein D 99.7 3.7E-16 8E-21 140.5 12.9 148 1-212 11-161 (435)
169 TIGR00437 feoB ferrous iron tr 99.7 7E-16 1.5E-20 143.2 14.7 150 1-212 4-154 (591)
170 cd01895 EngA2 EngA2 subfamily. 99.7 1.8E-15 3.9E-20 117.8 14.6 156 1-211 12-173 (174)
171 cd01889 SelB_euk SelB subfamil 99.7 3.5E-16 7.5E-21 125.7 10.5 89 112-215 93-188 (192)
172 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1E-15 2.2E-20 117.6 12.1 144 1-212 11-156 (157)
173 PRK00454 engB GTP-binding prot 99.7 5.4E-16 1.2E-20 124.3 11.0 161 1-213 34-194 (196)
174 PRK09518 bifunctional cytidyla 99.7 1.4E-15 3.1E-20 144.2 14.7 161 1-214 460-622 (712)
175 TIGR00475 selB selenocysteine- 99.7 6.6E-16 1.4E-20 143.1 12.0 147 1-214 10-167 (581)
176 cd04163 Era Era subfamily. Er 99.7 1.1E-15 2.3E-20 118.1 11.3 153 1-211 13-167 (168)
177 PRK05306 infB translation init 99.7 1.4E-15 3E-20 144.1 14.0 144 1-211 300-450 (787)
178 PRK12296 obgE GTPase CgtA; Rev 99.7 4E-15 8.6E-20 134.5 15.8 157 1-215 169-342 (500)
179 TIGR03594 GTPase_EngA ribosome 99.7 1.3E-15 2.7E-20 136.8 12.6 151 1-214 9-161 (429)
180 CHL00189 infB translation init 99.6 1E-15 2.3E-20 143.9 11.6 147 1-212 254-409 (742)
181 cd00880 Era_like Era (E. coli 99.6 5.9E-15 1.3E-19 112.5 13.6 155 1-211 6-162 (163)
182 TIGR03598 GTPase_YsxC ribosome 99.6 6.4E-16 1.4E-20 122.8 8.1 150 1-202 28-179 (179)
183 PRK00089 era GTPase Era; Revie 99.6 3.1E-15 6.8E-20 127.8 12.8 156 1-214 15-172 (292)
184 PRK11058 GTPase HflX; Provisio 99.6 2.9E-15 6.3E-20 134.0 13.0 153 1-214 207-363 (426)
185 PF02421 FeoB_N: Ferrous iron 99.6 1.6E-15 3.5E-20 117.7 9.9 146 1-208 10-156 (156)
186 PRK00093 GTP-binding protein D 99.6 6.2E-15 1.3E-19 132.6 15.0 160 1-213 183-344 (435)
187 cd04105 SR_beta Signal recogni 99.6 2.3E-15 5.1E-20 122.2 11.0 111 1-158 10-124 (203)
188 KOG0076|consensus 99.6 8.3E-16 1.8E-20 118.6 5.5 151 1-215 27-189 (197)
189 cd01888 eIF2_gamma eIF2-gamma 99.6 6E-15 1.3E-19 119.7 10.6 87 112-214 108-200 (203)
190 TIGR00491 aIF-2 translation in 99.6 6.5E-15 1.4E-19 136.2 12.2 155 1-210 14-213 (590)
191 PRK12298 obgE GTPase CgtA; Rev 99.6 3.7E-14 8.1E-19 125.5 16.0 158 1-214 169-334 (390)
192 PRK09518 bifunctional cytidyla 99.6 9.5E-15 2.1E-19 138.6 12.9 151 1-214 285-437 (712)
193 PRK05433 GTP-binding protein L 99.6 1.5E-14 3.1E-19 134.6 13.1 150 1-216 17-187 (600)
194 cd01876 YihA_EngB The YihA (En 99.6 1E-14 2.2E-19 112.9 9.8 159 1-211 9-169 (170)
195 cd01896 DRG The developmentall 99.6 8.2E-14 1.8E-18 115.5 14.2 50 143-212 176-225 (233)
196 COG1160 Predicted GTPases [Gen 99.5 8.7E-14 1.9E-18 122.5 12.9 149 1-213 13-165 (444)
197 PRK10512 selenocysteinyl-tRNA- 99.5 6.6E-14 1.4E-18 130.4 11.9 146 1-213 10-166 (614)
198 TIGR00483 EF-1_alpha translati 99.5 7.5E-14 1.6E-18 125.4 10.6 83 112-205 110-199 (426)
199 PRK09554 feoB ferrous iron tra 99.5 5.7E-13 1.2E-17 126.8 15.4 154 1-212 13-167 (772)
200 COG2229 Predicted GTPase [Gene 99.5 4.5E-13 9.7E-18 104.7 11.9 143 1-211 20-176 (187)
201 COG1160 Predicted GTPases [Gen 99.5 9.6E-13 2.1E-17 116.0 15.1 161 1-213 188-351 (444)
202 KOG0074|consensus 99.5 9.2E-14 2E-18 104.0 7.3 151 1-212 27-178 (185)
203 PF00009 GTP_EFTU: Elongation 99.5 1.2E-13 2.7E-18 110.5 8.7 87 112-212 95-186 (188)
204 KOG1707|consensus 99.5 3.3E-14 7.1E-19 127.6 5.7 156 1-217 19-179 (625)
205 PRK12317 elongation factor 1-a 99.5 3.6E-13 7.9E-18 120.9 11.7 85 112-205 109-197 (425)
206 cd04167 Snu114p Snu114p subfam 99.5 1.4E-13 3E-18 112.4 8.1 104 1-156 10-136 (213)
207 PRK04004 translation initiatio 99.5 6.1E-13 1.3E-17 123.4 12.9 154 1-210 16-215 (586)
208 cd04168 TetM_like Tet(M)-like 99.5 1.1E-12 2.3E-17 109.1 12.6 161 1-213 9-235 (237)
209 COG1159 Era GTPase [General fu 99.4 1.8E-12 3.9E-17 108.7 12.3 156 1-214 16-173 (298)
210 PRK10218 GTP-binding protein; 99.4 1.2E-12 2.5E-17 121.7 12.4 152 1-216 15-198 (607)
211 TIGR01394 TypA_BipA GTP-bindin 99.4 9.3E-13 2E-17 122.3 10.3 152 1-216 11-194 (594)
212 TIGR03680 eif2g_arch translati 99.4 8.8E-13 1.9E-17 117.7 9.6 86 112-214 105-197 (406)
213 PRK04000 translation initiatio 99.4 1.4E-12 3.1E-17 116.5 10.0 88 112-215 110-203 (411)
214 cd04166 CysN_ATPS CysN_ATPS su 99.4 1.9E-12 4.2E-17 105.4 10.0 82 112-204 102-185 (208)
215 KOG1423|consensus 99.4 4.7E-12 1E-16 106.3 11.9 175 1-214 82-272 (379)
216 COG0536 Obg Predicted GTPase [ 99.4 2.4E-11 5.2E-16 103.5 14.9 160 1-215 169-335 (369)
217 cd04165 GTPBP1_like GTPBP1-lik 99.4 4.4E-12 9.5E-17 104.5 10.2 94 112-209 111-219 (224)
218 COG0486 ThdF Predicted GTPase 99.3 1.4E-11 3E-16 109.0 13.0 150 1-215 227-378 (454)
219 KOG1489|consensus 99.3 3.3E-11 7.1E-16 101.7 14.4 152 1-210 206-364 (366)
220 COG1084 Predicted GTPase [Gene 99.3 3.3E-11 7.1E-16 102.2 14.1 158 1-215 178-338 (346)
221 PF10662 PduV-EutP: Ethanolami 99.3 5.2E-12 1.1E-16 96.2 8.0 78 112-209 65-142 (143)
222 cd01884 EF_Tu EF-Tu subfamily. 99.3 1.6E-11 3.6E-16 99.0 11.5 77 112-201 90-171 (195)
223 cd04104 p47_IIGP_like p47 (47- 99.3 8.9E-12 1.9E-16 100.7 8.9 97 112-214 82-185 (197)
224 cd01883 EF1_alpha Eukaryotic e 99.3 5.7E-12 1.2E-16 103.4 7.5 79 112-202 102-194 (219)
225 TIGR00157 ribosome small subun 99.3 1.6E-11 3.5E-16 102.5 9.6 82 112-210 38-120 (245)
226 TIGR00485 EF-Tu translation el 99.3 4.2E-11 9.1E-16 106.6 11.7 75 112-199 100-179 (394)
227 PRK12736 elongation factor Tu; 99.3 5.2E-11 1.1E-15 106.0 12.2 89 112-213 100-201 (394)
228 KOG0462|consensus 99.3 8.3E-11 1.8E-15 105.3 13.0 122 35-220 121-242 (650)
229 COG0532 InfB Translation initi 99.3 1.1E-10 2.3E-15 104.7 13.7 145 3-212 17-169 (509)
230 cd01850 CDC_Septin CDC/Septin. 99.2 7E-11 1.5E-15 100.3 11.4 161 1-196 14-185 (276)
231 COG2262 HflX GTPases [General 99.2 2.7E-10 5.8E-15 99.4 14.8 155 1-215 202-358 (411)
232 PRK14845 translation initiatio 99.2 1.2E-10 2.6E-15 113.3 14.0 154 2-210 472-670 (1049)
233 COG0481 LepA Membrane GTPase L 99.2 1.7E-10 3.7E-15 101.9 13.2 150 3-219 21-192 (603)
234 COG0370 FeoB Fe2+ transport sy 99.2 1.6E-10 3.4E-15 106.4 13.4 154 1-216 13-167 (653)
235 PRK12735 elongation factor Tu; 99.2 1.2E-10 2.6E-15 103.7 12.3 89 112-213 100-203 (396)
236 PRK13351 elongation factor G; 99.2 7.6E-11 1.7E-15 111.9 10.9 103 1-158 18-140 (687)
237 PF09439 SRPRB: Signal recogni 99.2 1.5E-11 3.3E-16 97.5 4.8 109 1-159 13-128 (181)
238 KOG0077|consensus 99.2 7.6E-12 1.7E-16 96.2 1.9 150 1-211 30-191 (193)
239 KOG1490|consensus 99.2 1.4E-10 2.9E-15 103.1 9.2 164 1-217 178-345 (620)
240 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 6.7E-10 1.4E-14 91.7 12.8 160 1-216 9-179 (232)
241 cd01885 EF2 EF2 (for archaea a 99.2 1.1E-10 2.4E-15 96.0 8.1 69 36-156 70-138 (222)
242 PRK00741 prfC peptide chain re 99.2 2.8E-10 6.1E-15 104.5 11.4 31 187-217 248-278 (526)
243 cd01899 Ygr210 Ygr210 subfamil 99.2 5.1E-10 1.1E-14 96.7 12.3 56 143-214 214-270 (318)
244 COG0218 Predicted GTPase [Gene 99.1 1.9E-09 4.1E-14 86.0 14.3 159 1-214 34-198 (200)
245 CHL00071 tufA elongation facto 99.1 5.5E-10 1.2E-14 99.9 12.2 76 112-200 100-180 (409)
246 TIGR00503 prfC peptide chain r 99.1 7.1E-10 1.5E-14 101.9 13.1 31 187-217 249-279 (527)
247 cd04169 RF3 RF3 subfamily. Pe 99.1 3.7E-10 7.9E-15 95.5 10.4 43 112-158 96-138 (267)
248 smart00010 small_GTPase Small 99.1 4.5E-10 9.8E-15 82.9 8.2 67 112-202 48-115 (124)
249 TIGR00484 EF-G translation elo 99.1 2E-09 4.4E-14 102.2 14.6 43 112-158 100-142 (689)
250 KOG0090|consensus 99.1 3.3E-10 7.2E-15 90.7 7.7 161 1-211 48-237 (238)
251 KOG1707|consensus 99.1 1.3E-09 2.8E-14 98.4 12.3 152 1-217 435-587 (625)
252 PRK00049 elongation factor Tu; 99.1 1.9E-09 4.1E-14 96.1 13.3 88 112-212 100-202 (396)
253 KOG1145|consensus 99.1 1.9E-09 4.2E-14 96.8 12.4 137 3-212 165-315 (683)
254 PLN00043 elongation factor 1-a 99.1 2.3E-09 5.1E-14 96.8 12.7 110 36-203 82-203 (447)
255 COG1163 DRG Predicted GTPase [ 99.1 6.7E-09 1.4E-13 88.2 14.5 150 1-213 73-289 (365)
256 TIGR02034 CysN sulfate adenyly 99.0 1.6E-09 3.4E-14 96.9 11.2 80 112-203 105-187 (406)
257 cd01886 EF-G Elongation factor 99.0 7.2E-10 1.6E-14 93.8 8.5 42 112-157 89-130 (270)
258 PRK12740 elongation factor G; 99.0 9.3E-10 2E-14 104.2 9.9 43 112-158 85-127 (668)
259 PLN03127 Elongation factor Tu; 99.0 3.8E-09 8.3E-14 95.4 13.3 89 112-213 149-252 (447)
260 PRK05124 cysN sulfate adenylyl 99.0 1.5E-09 3.3E-14 98.7 10.8 81 112-204 132-216 (474)
261 cd04170 EF-G_bact Elongation f 99.0 1.9E-09 4.2E-14 91.1 9.8 43 112-158 89-131 (268)
262 PLN03126 Elongation factor Tu; 99.0 2.5E-09 5.5E-14 97.2 9.4 76 112-200 169-249 (478)
263 PRK05506 bifunctional sulfate 99.0 2.8E-09 6E-14 100.4 9.9 80 112-203 129-211 (632)
264 KOG1191|consensus 98.9 4.5E-09 9.7E-14 93.4 9.8 163 1-217 278-454 (531)
265 PTZ00141 elongation factor 1- 98.9 8.7E-09 1.9E-13 93.1 11.7 80 112-203 110-203 (446)
266 PTZ00327 eukaryotic translatio 98.9 6.1E-09 1.3E-13 94.1 9.3 91 112-215 142-235 (460)
267 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 6.4E-08 1.4E-12 77.9 12.8 165 1-214 10-185 (196)
268 PRK09602 translation-associate 98.8 1.2E-07 2.6E-12 84.4 15.4 54 143-213 217-271 (396)
269 PF01926 MMR_HSR1: 50S ribosom 98.8 2.1E-08 4.5E-13 73.8 8.6 49 1-51 9-59 (116)
270 KOG0705|consensus 98.8 7.4E-09 1.6E-13 93.0 7.2 150 1-215 40-191 (749)
271 PRK12739 elongation factor G; 98.8 3.6E-08 7.9E-13 93.7 11.8 31 186-216 251-281 (691)
272 PRK00098 GTPase RsgA; Reviewed 98.8 2.8E-08 6E-13 85.4 8.5 84 110-209 80-163 (298)
273 PRK00007 elongation factor G; 98.8 1.2E-07 2.7E-12 90.1 13.4 31 186-216 253-283 (693)
274 cd00066 G-alpha G protein alph 98.8 2.7E-08 5.8E-13 86.2 7.8 151 16-215 130-313 (317)
275 TIGR00490 aEF-2 translation el 98.7 1.4E-08 3E-13 96.9 6.4 105 1-157 29-152 (720)
276 cd01855 YqeH YqeH. YqeH is an 98.7 4.9E-08 1.1E-12 78.2 8.0 83 112-213 36-125 (190)
277 cd01854 YjeQ_engC YjeQ/EngC. 98.7 7.4E-08 1.6E-12 82.3 9.0 83 110-210 78-161 (287)
278 COG3596 Predicted GTPase [Gene 98.7 4.9E-08 1.1E-12 81.4 7.6 94 112-214 119-223 (296)
279 PRK12289 GTPase RsgA; Reviewed 98.7 9E-08 1.9E-12 83.9 9.5 86 108-211 87-173 (352)
280 COG4917 EutP Ethanolamine util 98.7 2.5E-08 5.5E-13 73.5 5.0 78 112-210 66-143 (148)
281 TIGR00101 ureG urease accessor 98.7 1.6E-07 3.4E-12 76.1 9.6 80 112-213 114-196 (199)
282 PRK12288 GTPase RsgA; Reviewed 98.7 1.2E-07 2.7E-12 82.9 9.6 88 109-211 119-206 (347)
283 KOG1532|consensus 98.6 5.8E-07 1.3E-11 75.0 11.7 100 112-213 149-264 (366)
284 TIGR02836 spore_IV_A stage IV 98.6 6.1E-07 1.3E-11 79.3 12.5 84 112-212 146-236 (492)
285 TIGR03597 GTPase_YqeH ribosome 98.6 9.2E-08 2E-12 84.3 7.2 81 112-211 65-151 (360)
286 cd01859 MJ1464 MJ1464. This f 98.6 2E-07 4.3E-12 72.2 8.0 84 111-213 13-96 (156)
287 TIGR00073 hypB hydrogenase acc 98.6 4.7E-07 1E-11 73.6 10.3 81 112-212 125-206 (207)
288 PRK09866 hypothetical protein; 98.6 4.9E-07 1.1E-11 83.7 10.6 85 112-210 260-350 (741)
289 PF03029 ATP_bind_1: Conserved 98.5 3.7E-08 8E-13 81.9 2.6 99 112-212 124-236 (238)
290 KOG3905|consensus 98.5 1.7E-06 3.7E-11 73.8 12.2 65 143-214 222-291 (473)
291 COG2895 CysN GTPases - Sulfate 98.5 6.6E-07 1.4E-11 77.0 9.2 80 112-202 111-192 (431)
292 PRK13768 GTPase; Provisional 98.5 8E-07 1.7E-11 74.6 9.6 100 112-212 130-246 (253)
293 smart00275 G_alpha G protein a 98.5 4.8E-07 1E-11 79.1 7.9 127 39-215 184-336 (342)
294 PF05783 DLIC: Dynein light in 98.4 3.3E-06 7.1E-11 76.6 12.6 67 144-214 197-265 (472)
295 COG1217 TypA Predicted membran 98.4 4E-06 8.7E-11 74.6 12.3 148 3-217 17-199 (603)
296 cd01882 BMS1 Bms1. Bms1 is an 98.4 3E-06 6.4E-11 69.9 10.0 75 112-199 105-182 (225)
297 KOG3886|consensus 98.4 7E-07 1.5E-11 72.7 5.4 52 109-160 80-133 (295)
298 COG5257 GCD11 Translation init 98.3 5.8E-06 1.3E-10 70.5 10.1 91 112-218 111-207 (415)
299 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.9E-06 4.2E-11 65.7 6.6 73 111-200 12-84 (141)
300 PTZ00258 GTP-binding protein; 98.3 8.6E-06 1.9E-10 72.2 11.6 50 1-50 31-96 (390)
301 cd01849 YlqF_related_GTPase Yl 98.3 3.9E-06 8.4E-11 65.0 8.3 84 112-212 1-84 (155)
302 TIGR00991 3a0901s02IAP34 GTP-b 98.3 2.5E-06 5.5E-11 73.1 7.8 116 1-158 48-168 (313)
303 PF04548 AIG1: AIG1 family; I 98.3 3.1E-06 6.8E-11 69.1 8.1 166 1-214 10-187 (212)
304 cd01853 Toc34_like Toc34-like 98.3 1.5E-06 3.3E-11 72.7 6.1 50 1-52 41-92 (249)
305 cd01858 NGP_1 NGP-1. Autoanti 98.3 5.7E-06 1.2E-10 64.1 8.5 85 111-211 9-93 (157)
306 COG3276 SelB Selenocysteine-sp 98.2 4.1E-06 8.9E-11 74.0 8.2 84 112-212 75-161 (447)
307 PRK09435 membrane ATPase/prote 98.2 7.1E-06 1.5E-10 71.4 9.5 85 112-215 171-262 (332)
308 PF00735 Septin: Septin; Inte 98.2 1.2E-05 2.7E-10 68.4 10.6 135 1-160 14-159 (281)
309 KOG1144|consensus 98.2 7.8E-06 1.7E-10 76.2 9.6 118 40-213 541-687 (1064)
310 KOG0461|consensus 98.2 2.1E-05 4.5E-10 67.8 11.4 94 112-218 95-198 (522)
311 PRK09601 GTP-binding protein Y 98.2 4.8E-05 1E-09 66.8 13.2 50 1-50 12-77 (364)
312 PTZ00416 elongation factor 2; 98.2 2.5E-06 5.5E-11 82.7 5.8 41 112-156 117-157 (836)
313 KOG1486|consensus 98.2 5E-05 1.1E-09 62.9 12.1 50 144-213 239-288 (364)
314 TIGR00750 lao LAO/AO transport 98.1 1.5E-05 3.2E-10 68.6 8.7 87 112-213 149-238 (300)
315 PLN00116 translation elongatio 98.1 3.5E-06 7.5E-11 81.9 5.3 41 112-156 123-163 (843)
316 COG5019 CDC3 Septin family pro 98.1 9.2E-05 2E-09 64.3 12.9 131 1-160 33-179 (373)
317 PRK13796 GTPase YqeH; Provisio 98.1 2E-05 4.3E-10 69.6 9.1 81 112-211 71-157 (365)
318 COG5256 TEF1 Translation elong 98.0 1.7E-05 3.8E-10 69.7 7.9 83 112-204 110-202 (428)
319 cd01856 YlqF YlqF. Proteins o 98.0 3.5E-05 7.5E-10 60.6 8.5 80 112-212 21-100 (171)
320 COG4108 PrfC Peptide chain rel 98.0 0.00011 2.3E-09 65.2 12.1 30 188-217 251-280 (528)
321 PRK07560 elongation factor EF- 98.0 9E-06 1.9E-10 78.0 5.9 42 112-157 112-153 (731)
322 PF05049 IIGP: Interferon-indu 98.0 4.2E-05 9.1E-10 67.3 9.0 91 112-213 116-218 (376)
323 PRK10463 hydrogenase nickel in 97.9 4.3E-05 9.2E-10 65.1 8.2 56 144-211 231-287 (290)
324 KOG0458|consensus 97.9 7.9E-05 1.7E-09 68.0 10.0 113 33-204 249-373 (603)
325 TIGR03596 GTPase_YlqF ribosome 97.9 4.9E-05 1.1E-09 64.6 8.1 82 112-214 23-104 (276)
326 PF06858 NOG1: Nucleolar GTP-b 97.9 6.1E-05 1.3E-09 48.1 6.0 42 112-154 15-58 (58)
327 KOG2655|consensus 97.8 0.00046 9.9E-09 60.3 13.1 131 1-160 31-175 (366)
328 KOG0410|consensus 97.8 5.2E-05 1.1E-09 64.9 6.9 79 112-214 259-342 (410)
329 PRK01889 GTPase RsgA; Reviewed 97.8 9.9E-05 2.1E-09 65.0 8.5 83 109-209 111-193 (356)
330 PF00350 Dynamin_N: Dynamin fa 97.8 4.6E-05 1E-09 59.3 5.5 39 112-153 130-168 (168)
331 PRK09563 rbgA GTPase YlqF; Rev 97.8 0.00013 2.8E-09 62.3 8.6 81 112-213 26-106 (287)
332 KOG0468|consensus 97.8 3.1E-05 6.7E-10 71.6 5.0 103 1-156 138-262 (971)
333 KOG0082|consensus 97.7 0.00013 2.8E-09 63.6 7.5 150 17-216 165-347 (354)
334 cd01900 YchF YchF subfamily. 97.6 0.00013 2.9E-09 61.9 6.6 50 1-50 8-73 (274)
335 COG0050 TufB GTPases - transla 97.6 0.00082 1.8E-08 57.0 10.8 91 112-218 100-206 (394)
336 COG0480 FusA Translation elong 97.5 0.00023 4.9E-09 67.6 7.1 43 112-158 101-143 (697)
337 cd01857 HSR1_MMR1 HSR1/MMR1. 97.4 0.00019 4.1E-09 54.6 3.9 46 1-50 93-139 (141)
338 smart00053 DYNc Dynamin, GTPas 97.3 0.0035 7.6E-08 52.2 11.2 45 112-159 164-208 (240)
339 KOG1547|consensus 97.3 0.0013 2.9E-08 54.3 8.1 52 1-52 56-117 (336)
340 TIGR00993 3a0901s04IAP86 chlor 97.3 0.0026 5.6E-08 59.8 10.9 118 1-158 128-251 (763)
341 PF09547 Spore_IV_A: Stage IV 97.2 0.0087 1.9E-07 53.4 12.8 83 112-211 147-235 (492)
342 PF00503 G-alpha: G-protein al 97.2 0.00088 1.9E-08 59.7 6.6 147 17-212 205-389 (389)
343 KOG1954|consensus 97.2 0.0014 3.1E-08 57.2 7.4 46 111-159 182-227 (532)
344 COG0012 Predicted GTPase, prob 97.2 0.0015 3.2E-08 57.2 7.2 80 1-121 12-108 (372)
345 COG1162 Predicted GTPases [Gen 97.2 0.0041 8.8E-08 53.2 9.7 87 110-211 79-165 (301)
346 KOG1143|consensus 97.1 0.0048 1E-07 54.1 10.1 90 112-205 276-380 (591)
347 KOG0467|consensus 97.1 0.0009 1.9E-08 63.0 5.7 64 37-155 70-136 (887)
348 COG1703 ArgK Putative periplas 97.1 0.0017 3.8E-08 55.2 6.9 87 112-217 166-258 (323)
349 KOG2486|consensus 97.1 0.00078 1.7E-08 56.7 4.7 87 113-210 222-313 (320)
350 KOG1491|consensus 96.9 0.0032 6.9E-08 54.4 7.0 80 1-121 30-125 (391)
351 TIGR00092 GTP-binding protein 96.9 0.0034 7.3E-08 55.4 7.1 80 1-121 12-108 (368)
352 KOG3887|consensus 96.9 0.0065 1.4E-07 50.3 8.3 97 112-217 103-206 (347)
353 KOG1487|consensus 96.8 0.0079 1.7E-07 50.4 8.1 47 1-49 69-116 (358)
354 COG5258 GTPBP1 GTPase [General 96.7 0.01 2.3E-07 52.2 8.8 93 112-208 228-334 (527)
355 KOG0460|consensus 96.6 0.042 9E-07 47.8 11.5 89 112-215 142-247 (449)
356 COG0523 Putative GTPases (G3E 96.5 0.067 1.5E-06 46.5 12.5 48 107-159 113-161 (323)
357 cd04178 Nucleostemin_like Nucl 96.4 0.011 2.4E-07 46.7 6.4 45 112-158 1-45 (172)
358 TIGR03596 GTPase_YlqF ribosome 96.2 0.0063 1.4E-07 51.7 4.5 45 1-50 128-174 (276)
359 KOG4273|consensus 96.2 0.042 9.1E-07 45.8 8.9 97 112-211 80-220 (418)
360 PRK11537 putative GTP-binding 96.2 0.044 9.6E-07 47.6 9.6 14 1-14 14-27 (318)
361 KOG0465|consensus 96.1 0.053 1.1E-06 50.4 10.0 45 173-217 264-312 (721)
362 TIGR03348 VI_IcmF type VI secr 96.1 0.025 5.4E-07 57.3 8.6 47 111-158 202-258 (1169)
363 KOG0466|consensus 96.0 0.019 4.2E-07 49.2 6.2 89 112-216 150-244 (466)
364 PRK09563 rbgA GTPase YlqF; Rev 95.9 0.01 2.3E-07 50.6 4.5 46 1-50 131-177 (287)
365 KOG0448|consensus 95.8 0.027 5.9E-07 52.8 7.0 45 112-160 234-278 (749)
366 cd03112 CobW_like The function 95.8 0.019 4.2E-07 44.5 5.2 15 1-15 10-24 (158)
367 PRK14974 cell division protein 95.8 0.059 1.3E-06 47.2 8.6 69 112-205 254-322 (336)
368 COG1161 Predicted GTPases [Gen 95.8 0.0097 2.1E-07 51.7 3.7 47 1-51 142-189 (322)
369 COG0378 HypB Ni2+-binding GTPa 95.6 0.031 6.7E-07 44.9 5.5 81 113-213 120-201 (202)
370 TIGR00064 ftsY signal recognit 95.6 0.096 2.1E-06 44.5 8.8 69 112-205 192-260 (272)
371 cd02038 FleN-like FleN is a me 95.4 0.044 9.5E-07 41.5 5.8 43 112-156 68-110 (139)
372 TIGR03597 GTPase_YqeH ribosome 95.3 0.02 4.4E-07 50.5 4.0 14 1-14 164-177 (360)
373 TIGR01425 SRP54_euk signal rec 95.3 0.14 3.1E-06 46.2 9.3 41 112-158 214-254 (429)
374 PRK10416 signal recognition pa 95.2 0.25 5.3E-06 43.0 10.4 69 112-205 234-302 (318)
375 PF03193 DUF258: Protein of un 95.1 0.016 3.4E-07 45.3 2.4 15 1-15 45-59 (161)
376 PRK12288 GTPase RsgA; Reviewed 95.0 0.024 5.2E-07 49.8 3.5 15 1-15 215-229 (347)
377 COG1618 Predicted nucleotide k 94.7 0.98 2.1E-05 35.4 11.3 47 1-49 15-62 (179)
378 cd01854 YjeQ_engC YjeQ/EngC. 94.7 0.028 6E-07 48.1 3.1 16 1-16 171-186 (287)
379 PRK12289 GTPase RsgA; Reviewed 94.5 0.039 8.4E-07 48.6 3.6 15 1-15 182-196 (352)
380 cd01851 GBP Guanylate-binding 94.5 0.13 2.8E-06 42.3 6.5 53 1-53 17-74 (224)
381 TIGR00157 ribosome small subun 94.4 0.046 1E-06 45.6 3.7 15 1-15 130-144 (245)
382 KOG2743|consensus 94.4 0.064 1.4E-06 45.9 4.5 16 1-16 67-82 (391)
383 PRK13796 GTPase YqeH; Provisio 94.4 0.037 8.1E-07 48.9 3.3 14 1-14 170-183 (365)
384 KOG0099|consensus 94.2 0.075 1.6E-06 44.7 4.4 71 39-158 202-284 (379)
385 COG1162 Predicted GTPases [Gen 94.1 0.05 1.1E-06 46.6 3.3 50 1-53 174-230 (301)
386 KOG0469|consensus 93.9 0.13 2.8E-06 47.1 5.5 29 35-63 94-122 (842)
387 cd03110 Fer4_NifH_child This p 93.8 0.34 7.3E-06 37.9 7.4 60 112-191 116-175 (179)
388 PRK00098 GTPase RsgA; Reviewed 93.2 0.081 1.7E-06 45.5 3.2 15 1-15 174-188 (298)
389 cd03111 CpaE_like This protein 93.1 0.19 4.1E-06 36.2 4.6 39 112-152 66-106 (106)
390 PF11111 CENP-M: Centromere pr 93.1 1.7 3.6E-05 34.4 10.0 89 110-212 64-152 (176)
391 KOG0085|consensus 93.0 0.053 1.2E-06 44.8 1.6 74 142-215 265-351 (359)
392 COG1161 Predicted GTPases [Gen 93.0 0.2 4.2E-06 43.6 5.3 75 112-206 36-110 (322)
393 KOG1424|consensus 93.0 0.07 1.5E-06 48.7 2.5 46 1-50 324-370 (562)
394 KOG1424|consensus 92.9 0.26 5.6E-06 45.1 5.9 69 112-197 176-244 (562)
395 COG5192 BMS1 GTP-binding prote 92.8 0.29 6.2E-06 45.5 6.1 47 112-162 135-182 (1077)
396 PF03308 ArgK: ArgK protein; 92.7 0.096 2.1E-06 44.0 2.8 81 112-211 144-228 (266)
397 KOG0464|consensus 92.5 0.024 5.1E-07 50.5 -1.1 42 112-157 127-168 (753)
398 PRK14723 flhF flagellar biosyn 92.2 1.4 3E-05 42.8 10.2 70 112-204 295-366 (767)
399 KOG0393|consensus 92.2 0.094 2E-06 42.3 2.0 40 64-103 144-183 (198)
400 PRK13505 formate--tetrahydrofo 92.2 0.73 1.6E-05 42.7 7.9 108 81-214 300-430 (557)
401 cd02036 MinD Bacterial cell di 92.1 1.2 2.6E-05 34.4 8.2 43 112-157 86-128 (179)
402 PRK13695 putative NTPase; Prov 92.0 1.6 3.4E-05 34.0 8.8 48 143-213 126-173 (174)
403 cd02042 ParA ParA and ParB of 91.9 0.38 8.1E-06 34.0 4.8 22 112-135 63-84 (104)
404 KOG3929|consensus 91.7 0.29 6.3E-06 41.2 4.4 49 2-51 54-104 (363)
405 PRK14722 flhF flagellar biosyn 91.7 2.2 4.7E-05 38.0 10.2 14 1-14 147-160 (374)
406 KOG0780|consensus 91.6 0.34 7.3E-06 43.0 4.9 18 112-129 215-232 (483)
407 PRK14721 flhF flagellar biosyn 91.5 1.7 3.7E-05 39.3 9.4 64 112-201 301-365 (420)
408 KOG2423|consensus 91.0 1.1 2.3E-05 40.1 7.4 87 111-214 214-300 (572)
409 PRK12727 flagellar biosynthesi 90.8 2 4.3E-05 40.0 9.4 65 112-201 459-523 (559)
410 KOG2484|consensus 90.5 0.94 2E-05 40.3 6.6 46 111-158 147-192 (435)
411 KOG1534|consensus 89.9 0.95 2.1E-05 37.1 5.7 76 142-218 163-256 (273)
412 KOG0092|consensus 88.6 0.28 6E-06 39.3 1.8 42 64-106 133-174 (200)
413 PRK06995 flhF flagellar biosyn 88.4 3.8 8.2E-05 37.8 9.2 65 114-204 368-434 (484)
414 KOG0098|consensus 88.3 0.26 5.6E-06 39.4 1.4 36 64-100 134-169 (216)
415 KOG0463|consensus 88.1 2.1 4.6E-05 38.0 7.0 18 188-205 333-350 (641)
416 cd01983 Fer4_NifH The Fer4_Nif 88.0 1.7 3.6E-05 29.4 5.4 38 1-51 9-46 (99)
417 COG3523 IcmF Type VI protein s 87.6 1.3 2.9E-05 44.8 6.2 47 112-158 216-271 (1188)
418 PF14331 ImcF-related_N: ImcF- 87.3 1.5 3.2E-05 37.1 5.6 47 112-158 27-84 (266)
419 COG1149 MinD superfamily P-loo 87.1 3.2 7E-05 35.2 7.3 47 107-157 182-228 (284)
420 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 87.1 0.36 7.8E-06 38.2 1.7 36 64-99 144-180 (182)
421 KOG3859|consensus 86.9 0.92 2E-05 38.7 4.0 51 1-51 52-107 (406)
422 cd04129 Rho2 Rho2 subfamily. 86.7 0.62 1.3E-05 36.7 2.8 48 64-111 138-185 (187)
423 PRK12723 flagellar biosynthesi 86.5 7.2 0.00016 34.9 9.7 68 112-204 287-355 (388)
424 COG0541 Ffh Signal recognition 86.2 0.91 2E-05 40.9 3.8 12 1-12 110-121 (451)
425 PF02492 cobW: CobW/HypB/UreG, 85.7 0.4 8.6E-06 37.8 1.2 42 112-158 115-156 (178)
426 KOG2484|consensus 85.0 0.66 1.4E-05 41.3 2.3 48 1-52 262-310 (435)
427 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 84.7 0.68 1.5E-05 38.0 2.2 42 64-105 140-182 (222)
428 KOG0078|consensus 84.3 0.63 1.4E-05 37.7 1.8 36 64-100 140-175 (207)
429 cd01875 RhoG RhoG subfamily. 84.1 0.9 2E-05 36.0 2.6 40 64-103 142-181 (191)
430 KOG0744|consensus 83.9 7.8 0.00017 34.0 8.3 14 1-14 187-200 (423)
431 cd04134 Rho3 Rho3 subfamily. 83.9 0.97 2.1E-05 35.7 2.7 47 65-111 140-186 (189)
432 COG1419 FlhF Flagellar GTP-bin 83.9 10 0.00022 34.0 9.3 16 38-53 281-296 (407)
433 PF13207 AAA_17: AAA domain; P 83.3 0.62 1.3E-05 33.7 1.3 14 1-14 9-22 (121)
434 PF03266 NTPase_1: NTPase; In 83.2 1.4 3.1E-05 34.5 3.4 47 1-49 9-56 (168)
435 PF13555 AAA_29: P-loop contai 83.0 0.66 1.4E-05 30.2 1.2 13 1-13 33-45 (62)
436 KOG2485|consensus 82.5 0.89 1.9E-05 39.2 2.0 50 1-51 153-208 (335)
437 cd04121 Rab40 Rab40 subfamily. 82.2 1.1 2.3E-05 35.8 2.3 42 64-106 133-174 (189)
438 PF13238 AAA_18: AAA domain; P 82.2 0.72 1.6E-05 33.4 1.3 14 1-14 8-21 (129)
439 cd04133 Rop_like Rop subfamily 82.1 0.88 1.9E-05 35.8 1.8 38 64-101 138-175 (176)
440 cd04131 Rnd Rnd subfamily. Th 81.6 0.89 1.9E-05 35.7 1.7 36 64-99 140-176 (178)
441 KOG0097|consensus 80.9 1.1 2.3E-05 34.2 1.8 44 55-100 131-174 (215)
442 PF02367 UPF0079: Uncharacteri 80.7 0.88 1.9E-05 33.9 1.3 15 1-15 25-39 (123)
443 COG2759 MIS1 Formyltetrahydrof 80.7 13 0.00029 33.8 8.8 100 89-214 306-427 (554)
444 PF03205 MobB: Molybdopterin g 78.9 1.1 2.3E-05 34.1 1.3 14 1-14 10-23 (140)
445 PF13671 AAA_33: AAA domain; P 78.7 1.1 2.3E-05 33.4 1.2 13 1-13 9-21 (143)
446 KOG0083|consensus 78.7 1.6 3.4E-05 33.1 2.0 35 64-99 126-160 (192)
447 cd02019 NK Nucleoside/nucleoti 78.4 1.2 2.5E-05 29.3 1.2 14 1-14 9-22 (69)
448 cd01873 RhoBTB RhoBTB subfamil 77.9 1.2 2.7E-05 35.5 1.4 33 64-97 162-194 (195)
449 PF13401 AAA_22: AAA domain; P 77.8 1.2 2.6E-05 32.5 1.3 14 1-14 14-27 (131)
450 PF13173 AAA_14: AAA domain 77.2 1.2 2.5E-05 33.0 1.0 16 1-16 12-27 (128)
451 PF01268 FTHFS: Formate--tetra 76.9 5.3 0.00011 37.2 5.3 121 64-212 284-427 (557)
452 PF00005 ABC_tran: ABC transpo 76.6 1.3 2.9E-05 32.7 1.2 14 1-14 21-34 (137)
453 PRK00771 signal recognition pa 76.6 12 0.00026 34.0 7.5 39 112-157 207-246 (437)
454 PF13191 AAA_16: AAA ATPase do 75.9 1.4 3.1E-05 34.1 1.3 13 1-13 34-46 (185)
455 PRK08233 hypothetical protein; 75.8 1.4 3E-05 34.2 1.2 14 1-14 13-26 (182)
456 PRK13900 type IV secretion sys 75.4 2.3 4.9E-05 37.2 2.5 29 1-29 170-198 (332)
457 TIGR00150 HI0065_YjeE ATPase, 75.4 1.4 3.1E-05 33.2 1.1 14 1-14 32-45 (133)
458 COG0194 Gmk Guanylate kinase [ 75.2 1.7 3.7E-05 34.7 1.5 39 1-42 14-54 (191)
459 KOG0084|consensus 74.7 2 4.2E-05 34.6 1.7 37 64-100 137-173 (205)
460 TIGR02475 CobW cobalamin biosy 74.1 1.6 3.5E-05 38.2 1.3 14 1-14 14-27 (341)
461 PRK10646 ADP-binding protein; 74.0 1.6 3.4E-05 33.9 1.0 14 1-14 38-51 (153)
462 COG1763 MobB Molybdopterin-gua 73.8 1.7 3.7E-05 33.9 1.2 13 1-13 12-24 (161)
463 cd02023 UMPK Uridine monophosp 73.5 1.7 3.8E-05 34.5 1.2 14 1-14 9-22 (198)
464 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 73.3 2.5 5.4E-05 34.9 2.1 37 64-100 152-189 (232)
465 COG3640 CooC CO dehydrogenase 73.0 13 0.00027 31.1 6.1 44 110-156 155-198 (255)
466 cd02025 PanK Pantothenate kina 72.9 1.8 3.9E-05 35.4 1.2 13 1-13 9-21 (220)
467 smart00382 AAA ATPases associa 72.9 1.9 4.1E-05 30.9 1.2 16 1-16 12-27 (148)
468 cd04103 Centaurin_gamma Centau 72.4 2 4.4E-05 32.9 1.3 33 64-96 124-156 (158)
469 PRK14737 gmk guanylate kinase; 72.0 3 6.6E-05 33.2 2.3 14 1-14 14-27 (186)
470 PF03709 OKR_DC_1_N: Orn/Lys/A 72.0 7.8 0.00017 28.2 4.3 38 112-153 40-77 (115)
471 PRK10751 molybdopterin-guanine 71.8 1.9 4.1E-05 34.1 1.0 14 1-14 16-29 (173)
472 TIGR00959 ffh signal recogniti 71.8 34 0.00073 31.1 9.1 66 112-203 214-280 (428)
473 PF13521 AAA_28: AAA domain; P 71.6 1.7 3.6E-05 33.5 0.6 14 1-14 9-22 (163)
474 PF05729 NACHT: NACHT domain 71.4 2.1 4.6E-05 32.3 1.2 14 1-14 10-23 (166)
475 COG2804 PulE Type II secretory 71.2 9.1 0.0002 35.3 5.3 29 1-29 268-297 (500)
476 KOG2485|consensus 71.2 11 0.00024 32.7 5.5 41 112-158 48-88 (335)
477 COG1428 Deoxynucleoside kinase 71.2 2.1 4.5E-05 34.9 1.1 14 1-14 14-27 (216)
478 PF01637 Arch_ATPase: Archaeal 71.0 2.2 4.7E-05 34.1 1.3 15 1-15 30-44 (234)
479 PRK13851 type IV secretion sys 70.9 2.7 5.8E-05 37.0 1.9 14 1-14 172-185 (344)
480 PRK07261 topology modulation p 70.7 2.2 4.8E-05 33.3 1.2 13 1-13 10-22 (171)
481 PF00004 AAA: ATPase family as 70.7 2.4 5.1E-05 30.7 1.3 14 1-14 8-21 (132)
482 PF05879 RHD3: Root hair defec 70.6 12 0.00027 36.3 6.5 51 1-51 5-60 (742)
483 COG0396 sufC Cysteine desulfur 70.5 3.6 7.9E-05 34.1 2.4 21 1-24 40-60 (251)
484 PRK14738 gmk guanylate kinase; 70.4 3.2 7E-05 33.4 2.1 25 189-215 171-195 (206)
485 TIGR00235 udk uridine kinase. 70.1 2.3 4.9E-05 34.2 1.2 13 1-13 16-28 (207)
486 PF00485 PRK: Phosphoribulokin 69.6 2.5 5.4E-05 33.6 1.3 13 1-13 9-21 (194)
487 TIGR00176 mobB molybdopterin-g 69.5 2.5 5.4E-05 32.6 1.2 13 1-13 9-21 (155)
488 PRK10078 ribose 1,5-bisphospho 69.3 2.4 5.2E-05 33.5 1.1 14 1-14 12-25 (186)
489 TIGR02322 phosphon_PhnN phosph 69.3 2.5 5.4E-05 32.9 1.2 14 1-14 11-24 (179)
490 COG4962 CpaF Flp pilus assembl 69.1 3.3 7.2E-05 36.3 2.0 15 1-15 183-197 (355)
491 cd02030 NDUO42 NADH:Ubiquinone 69.1 2.5 5.4E-05 34.4 1.2 13 1-13 9-21 (219)
492 COG0802 Predicted ATPase or ki 68.8 2.4 5.2E-05 32.6 1.0 15 1-15 35-49 (149)
493 cd03116 MobB Molybdenum is an 68.7 2.6 5.7E-05 32.7 1.2 13 1-13 11-23 (159)
494 cd01673 dNK Deoxyribonucleosid 68.5 2.6 5.6E-05 33.3 1.2 13 1-13 9-21 (193)
495 PRK08118 topology modulation p 68.1 2.7 5.9E-05 32.7 1.2 14 1-14 11-24 (167)
496 PRK01889 GTPase RsgA; Reviewed 68.1 3.9 8.5E-05 36.1 2.3 14 1-14 205-218 (356)
497 PRK05480 uridine/cytidine kina 68.0 2.7 5.9E-05 33.7 1.2 14 1-14 16-29 (209)
498 cd00009 AAA The AAA+ (ATPases 67.9 2.8 6.1E-05 30.3 1.2 15 1-15 29-43 (151)
499 PF00910 RNA_helicase: RNA hel 67.8 2.9 6.2E-05 29.9 1.2 14 1-14 8-21 (107)
500 TIGR01360 aden_kin_iso1 adenyl 67.8 2.7 5.9E-05 32.7 1.2 13 1-13 13-25 (188)
No 1
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.6e-36 Score=244.05 Aligned_cols=179 Identities=70% Similarity=1.152 Sum_probs=156.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+.+|+.+.|.+.|.||+++.+...+.+++..+.+.+|||+|++.|+.+++.+++++
T Consensus 13 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a----------------- 75 (191)
T cd01875 13 AVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQT----------------- 75 (191)
T ss_pred CCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCC-----------------
Confidence 799999999999999999999999988877778899999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||++++.||+.+.+.|...+.+..+++|++|||||+||.+...
T Consensus 76 -------------------------------~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~ 124 (191)
T cd01875 76 -------------------------------NVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD 124 (191)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChh
Confidence 9999999999999999997569888887777899999999999976544
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCCCCCcccC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 228 (228)
..+.......+.++.+++..+++.+++.+|+|+||++|.||+++|.++++.++.+.+.. ++++|.||
T Consensus 125 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~~~~-~~~~c~~~ 191 (191)
T cd01875 125 TLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIK-DTKSCVLL 191 (191)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcccccc-CCCCceeC
Confidence 34443344456788899999999999668999999999999999999999999876533 44569876
No 2
>KOG0084|consensus
Probab=100.00 E-value=4.7e-37 Score=240.38 Aligned_cols=156 Identities=29% Similarity=0.551 Sum_probs=146.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+.||..+.|.+.|..|++.++. +++.++|+.++++||||+||++|+.+..+||+++
T Consensus 19 ~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a---------------- 82 (205)
T KOG0084|consen 19 GVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA---------------- 82 (205)
T ss_pred CcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC----------------
Confidence 79999999999999999999999988885 7899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+|||+|||+|+.+||..+. .|+.++.++. +++|.+|||||+|+.+.
T Consensus 83 --------------------------------hGii~vyDiT~~~SF~~v~-~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 83 --------------------------------HGIIFVYDITKQESFNNVK-RWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred --------------------------------CeEEEEEEcccHHHhhhHH-HHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 9999999999999999999 9999999997 56899999999999986
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.++.++++.|+.++++..|+|+||+++.||+++|..+...++..+.
T Consensus 130 ------------~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 130 ------------RVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred ------------eecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcc
Confidence 88999999999999996449999999999999999999998876543
No 3
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.5e-34 Score=229.97 Aligned_cols=180 Identities=47% Similarity=0.845 Sum_probs=158.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|...+.||+++.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a----------------- 72 (189)
T cd04134 10 ACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADT----------------- 72 (189)
T ss_pred CCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCC-----------------
Confidence 799999999999999999999999888877777888889999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
+++++|||+++++||+.+...|+..+....++.|++|||||+|+.+..+
T Consensus 73 -------------------------------~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 73 -------------------------------DVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence 9999999999999999987579999988777899999999999987654
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCCCCCcccC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 228 (228)
..+.......+.++.+++..+++..+..+|+|+||++|.||+++|.++++.++.+++..+.++.|.||
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~ 189 (189)
T cd04134 122 ERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVRPPHPHSSACTIA 189 (189)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcccccCcCCCcceeC
Confidence 33333333334678889999999888668999999999999999999999999999888889999886
No 4
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.8e-34 Score=230.59 Aligned_cols=166 Identities=43% Similarity=0.856 Sum_probs=147.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.+.|.||+++.+.+.+.+++..+.+.+|||+|++.|..+++.+++++
T Consensus 15 ~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a----------------- 77 (182)
T cd04172 15 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS----------------- 77 (182)
T ss_pred CCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCC-----------------
Confidence 799999999999999999999999988888888999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.||+.+...|+..+....++.|++|||||+||.+...
T Consensus 78 -------------------------------d~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~ 126 (182)
T cd04172 78 -------------------------------DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLT 126 (182)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChh
Confidence 9999999999999999984499999998888899999999999975433
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC-HHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~-v~~lf~~l~~~i~~ 214 (228)
........+.+.++.+++..+++.+++.+|+||||++|.| |+++|..+++.++.
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 2222223334679999999999999976899999999998 99999999997654
No 5
>KOG0092|consensus
Probab=100.00 E-value=1.1e-34 Score=226.19 Aligned_cols=156 Identities=28% Similarity=0.575 Sum_probs=144.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+.||+.+.|.+...||++..| .+++.+++..++++||||+||++|.++.+.||+++
T Consensus 15 ~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA---------------- 78 (200)
T KOG0092|consen 15 GVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGA---------------- 78 (200)
T ss_pred CCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCC----------------
Confidence 7999999999999999988899997666 68899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
+++|+|||+|+.+||..+. .|..+|++.-+ ++-+.|||||+||.+.
T Consensus 79 --------------------------------~AAivvYDit~~~SF~~aK-~WvkeL~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 79 --------------------------------NAAIVVYDITDEESFEKAK-NWVKELQRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred --------------------------------cEEEEEEecccHHHHHHHH-HHHHHHHhhCCCCeEEEEecchhhhhhc
Confidence 9999999999999999999 99999998864 5667789999999985
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
|.+..+++..+++..| ..|+|+||++|.||+++|..+.+.+....+.
T Consensus 126 ------------R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 126 ------------REVEFEEAQAYAESQG-LLFFETSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ------------ccccHHHHHHHHHhcC-CEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence 7799999999999999 5899999999999999999999999876543
No 6
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.6e-34 Score=226.59 Aligned_cols=165 Identities=43% Similarity=0.856 Sum_probs=145.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|.+.|.||+++.+.+.+.+++..+.+.+|||+|++.+..+++.+++++
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a----------------- 73 (178)
T cd04131 11 QCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDS----------------- 73 (178)
T ss_pred CCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCC-----------------
Confidence 799999999999999999999999888888888999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||+++++||+.+.+.|+..+.+++++.|++|||||+||.+...
T Consensus 74 -------------------------------~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~ 122 (178)
T cd04131 74 -------------------------------DAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLS 122 (178)
T ss_pred -------------------------------CEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChh
Confidence 9999999999999999974499999998888899999999999975333
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC-HHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~-v~~lf~~l~~~i~ 213 (228)
........+.+.++.+++..+++.+++.+|+|+||++|.| |+++|..+++..+
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 2222222334679999999999999976899999999995 9999999999765
No 7
>KOG0078|consensus
Probab=100.00 E-value=1e-34 Score=230.03 Aligned_cols=155 Identities=32% Similarity=0.616 Sum_probs=146.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+.+|..+.|...+..|++.++. +++.+++..+.+++|||+||+++..+..+||+++
T Consensus 22 ~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA---------------- 85 (207)
T KOG0078|consen 22 GVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA---------------- 85 (207)
T ss_pred CCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc----------------
Confidence 79999999999999999999999987775 7889999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
+++++|||+|+..||+++. .|+..+.++.+ .+|++|||||+|+...
T Consensus 86 --------------------------------~gi~LvyDitne~Sfeni~-~W~~~I~e~a~~~v~~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 86 --------------------------------MGILLVYDITNEKSFENIR-NWIKNIDEHASDDVVKILVGNKCDLEEK 132 (207)
T ss_pred --------------------------------CeeEEEEEccchHHHHHHH-HHHHHHHhhCCCCCcEEEeecccccccc
Confidence 9999999999999999999 79999999875 8999999999999985
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
|.|+.+.++++|.++| ++|+|+||++|.||+++|..+.+.++.+.+
T Consensus 133 ------------R~V~~e~ge~lA~e~G-~~F~EtSAk~~~NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 133 ------------RQVSKERGEALAREYG-IKFFETSAKTNFNIEEAFLSLARDILQKLE 178 (207)
T ss_pred ------------ccccHHHHHHHHHHhC-CeEEEccccCCCCHHHHHHHHHHHHHhhcc
Confidence 7899999999999999 699999999999999999999999985443
No 8
>KOG0098|consensus
Probab=100.00 E-value=5.6e-35 Score=226.51 Aligned_cols=155 Identities=28% Similarity=0.521 Sum_probs=145.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||+|+.||+.+.|.+.+..|++..|. ..+.+|+++++++||||+|++.|+++..+||+++
T Consensus 16 gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a---------------- 79 (216)
T KOG0098|consen 16 GVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGA---------------- 79 (216)
T ss_pred CccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccC----------------
Confidence 79999999999999999999999988885 5689999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
-++|+|||+|.++||.++. .|+..++++. ++.-++|+|||+||...
T Consensus 80 --------------------------------~GalLVydit~r~sF~hL~-~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 80 --------------------------------AGALLVYDITRRESFNHLT-SWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred --------------------------------cceEEEEEccchhhHHHHH-HHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 9999999999999999998 9999999985 78899999999999986
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
|.|+.+|++.||+++| ..|+|+||++++||+++|......|+...+
T Consensus 127 ------------R~Vs~EEGeaFA~ehg-LifmETSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 127 ------------REVSKEEGEAFAREHG-LIFMETSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred ------------ccccHHHHHHHHHHcC-ceeehhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7799999999999999 579999999999999999999998876544
No 9
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=9.6e-34 Score=232.78 Aligned_cols=169 Identities=41% Similarity=0.829 Sum_probs=150.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.+.|.||+++.|...+.+++..+.+.+|||+|++.|..+++.+|+++
T Consensus 11 ~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~----------------- 73 (222)
T cd04173 11 ECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDS----------------- 73 (222)
T ss_pred CCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCC-----------------
Confidence 799999999999999999999999988888889999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||+++++||+.+.+.|...+....++.|++|||||+||.....
T Consensus 74 -------------------------------d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~ 122 (222)
T cd04173 74 -------------------------------DAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLA 122 (222)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchh
Confidence 9999999999999999997689988888778899999999999976544
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC-HHHHHHHHHHHhcCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~-v~~lf~~l~~~i~~~~~ 217 (228)
............++.+++..++++.|+.+|+||||+++.+ |+++|..++.+.+.+.+
T Consensus 123 ~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 123 TLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred hhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence 4444444444578999999999999977999999999985 99999999998876433
No 10
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.9e-34 Score=233.95 Aligned_cols=167 Identities=40% Similarity=0.789 Sum_probs=146.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.+.|.||++..|...+.+++..+.+.+|||+|++.|..+++.+|+++
T Consensus 23 ~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a----------------- 85 (232)
T cd04174 23 QCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS----------------- 85 (232)
T ss_pred CCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC-----------------
Confidence 799999999999999999999999888887888999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+.+...|+..+....++.|++|||||+||.+...
T Consensus 86 -------------------------------d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~ 134 (232)
T cd04174 86 -------------------------------DAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLS 134 (232)
T ss_pred -------------------------------cEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccc
Confidence 9999999999999999864499999998878899999999999965322
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCC-CHHHHHHHHHHHhcCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQK-GLKTVFDEAIRAVLCP 215 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~-~v~~lf~~l~~~i~~~ 215 (228)
..........+.++.++++.+++.+++..|+||||++|. ||+++|..++..+++.
T Consensus 135 ~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 135 TLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred hhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 222222223467999999999999996579999999998 8999999999987764
No 11
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.9e-33 Score=223.60 Aligned_cols=164 Identities=63% Similarity=1.058 Sum_probs=143.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+.+|+.+.|..+|.||+++.+...+.+++..+.+.+|||+|++.+..+++.+++++
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 73 (176)
T cd04133 11 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGA----------------- 73 (176)
T ss_pred CCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCC-----------------
Confidence 799999999999999999999999988887788899999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
+++|+|||+++++||+.+.+.|+..+....++.|++|||||+||.+...
T Consensus 74 -------------------------------~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (176)
T cd04133 74 -------------------------------DVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQ 122 (176)
T ss_pred -------------------------------cEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChh
Confidence 9999999999999999984489999988777899999999999975421
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. ......+.++.+++..+++.+++.+|+|+||++|.||+++|..+++.+++
T Consensus 123 ~~--~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 123 YL--ADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred hh--hhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence 00 00111245889999999999996579999999999999999999998754
No 12
>KOG0393|consensus
Probab=100.00 E-value=9.4e-34 Score=225.19 Aligned_cols=169 Identities=79% Similarity=1.309 Sum_probs=161.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
++|||+|+..|..+.|++.|.||+.++|+..+.++ |+.+.+.+|||+||+.|..+++..|.++
T Consensus 14 a~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~t---------------- 77 (198)
T KOG0393|consen 14 AVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQT---------------- 77 (198)
T ss_pred CcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCC----------------
Confidence 58999999999999999999999999999999995 9999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|+|+++|++.+++||+++.++|+.+++++++++|+||||+|.||.+..
T Consensus 78 --------------------------------dvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~ 125 (198)
T KOG0393|consen 78 --------------------------------DVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDP 125 (198)
T ss_pred --------------------------------CEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCH
Confidence 999999999999999999999999999999999999999999999777
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
...+.+.......++.+++..++++.|...|+|+||++..|++++|+.+++..+.+.+
T Consensus 126 ~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 126 STLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 7777888778899999999999999999999999999999999999999999998765
No 13
>KOG0094|consensus
Probab=100.00 E-value=7.6e-34 Score=221.81 Aligned_cols=153 Identities=32% Similarity=0.537 Sum_probs=142.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
+|||||||+||+.+.|...|.+|+|.++ ++++.+.+..+.+++|||+||++|+.+.+.|++++
T Consensus 32 sVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds---------------- 95 (221)
T KOG0094|consen 32 SVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS---------------- 95 (221)
T ss_pred ccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCC----------------
Confidence 6999999999999999999999998776 68899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~ 157 (228)
.++|+|||++|..||++.. +|++.+++.+. ++-|+|||||.||.+
T Consensus 96 --------------------------------~vaviVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 96 --------------------------------SVAVIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred --------------------------------eEEEEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccc
Confidence 9999999999999999998 99999999874 367789999999999
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. |.++.+++.+.+++++. .|.++||+.|.||.++|..+...+...
T Consensus 143 k------------rqvs~eEg~~kAkel~a-~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 143 K------------RQVSIEEGERKAKELNA-EFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred h------------hhhhHHHHHHHHHHhCc-EEEEecccCCCCHHHHHHHHHHhccCc
Confidence 7 67999999999999994 899999999999999999988877654
No 14
>KOG0079|consensus
Probab=100.00 E-value=2.1e-34 Score=215.63 Aligned_cols=154 Identities=30% Similarity=0.590 Sum_probs=146.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||+|+.+|..+.|.+.|..|++.++. +++.++|..++++|||++|++.|+.+...+|++.
T Consensus 18 gVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgt---------------- 81 (198)
T KOG0079|consen 18 GVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGT---------------- 81 (198)
T ss_pred cccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCC----------------
Confidence 79999999999999999999999987775 6789999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++++|||+|+.+||.++. .|++++++.++.+|-+|||||.|+...
T Consensus 82 --------------------------------hgv~vVYDVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~R- 127 (198)
T KOG0079|consen 82 --------------------------------HGVIVVYDVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPER- 127 (198)
T ss_pred --------------------------------ceEEEEEECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCccc-
Confidence 9999999999999999999 999999999999999999999999885
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+..+++.+|+...| +.+||+||+.++|++..|+-+.+++++.+
T Consensus 128 -----------rvV~t~dAr~~A~~mg-ie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 128 -----------RVVDTEDARAFALQMG-IELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred -----------eeeehHHHHHHHHhcC-chheehhhhhcccchHHHHHHHHHHHHHH
Confidence 8899999999999999 69999999999999999999998887643
No 15
>KOG0080|consensus
Probab=100.00 E-value=6e-34 Score=215.83 Aligned_cols=152 Identities=27% Similarity=0.527 Sum_probs=142.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+.||+.+.|.+....|++.++. +.+.++|+.+++-||||+||++|+.+.++||+++
T Consensus 21 GVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRga---------------- 84 (209)
T KOG0080|consen 21 GVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGA---------------- 84 (209)
T ss_pred CccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccC----------------
Confidence 89999999999999999888888988885 6789999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~ 157 (228)
.++|+|||+|.+++|..+. .|+.++.-|+. ++-.++||||+|...
T Consensus 85 --------------------------------qGiIlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 85 --------------------------------QGIILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred --------------------------------ceeEEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchh
Confidence 9999999999999999996 99999999874 566789999999776
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. |.++.+++.+|+++++| -|+|+||++.+||+.+|++++++|++
T Consensus 132 ~------------R~V~reEG~kfAr~h~~-LFiE~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 132 E------------RVVDREEGLKFARKHRC-LFIECSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred c------------ccccHHHHHHHHHhhCc-EEEEcchhhhccHHHHHHHHHHHHhc
Confidence 4 78999999999999996 79999999999999999999999986
No 16
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=8e-33 Score=219.62 Aligned_cols=165 Identities=71% Similarity=1.199 Sum_probs=146.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|...|.||+++.+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 11 ~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 73 (175)
T cd01874 11 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT----------------- 73 (175)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccC-----------------
Confidence 799999999999999999999999988887788889999999999999999999998889888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+.+.+.|+..+....+++|++|||||+|+.+...
T Consensus 74 -------------------------------~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (175)
T cd01874 74 -------------------------------DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 122 (175)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChh
Confidence 9999999999999999997569999988777899999999999976655
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..+.......+.++.+++..+++..++..|+|+||++|.||+++|+.++..++
T Consensus 123 ~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~~ 175 (175)
T cd01874 123 TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175 (175)
T ss_pred hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 55555444457899999999999988668999999999999999999998653
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=6.7e-33 Score=222.78 Aligned_cols=155 Identities=26% Similarity=0.448 Sum_probs=140.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|..+.|...+.++++..+ ...+.+++..+.+.+||++|++.|..+++.+++++
T Consensus 16 ~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~a---------------- 79 (189)
T cd04121 16 DVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGA---------------- 79 (189)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCC----------------
Confidence 7999999999999999888888886655 45678899999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++|+|||++++.||+.+. .|++.+..+.++.|++|||||+||.+.
T Consensus 80 --------------------------------d~illVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~- 125 (189)
T cd04121 80 --------------------------------QGIILVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFK- 125 (189)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhc-
Confidence 9999999999999999998 999999887788999999999999764
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.++.++++.+++.+++ +|+|+||++|.||+++|+++++.+..++.
T Consensus 126 -----------~~v~~~~~~~~a~~~~~-~~~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 126 -----------RQVATEQAQAYAERNGM-TFFEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred -----------cCCCHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 56889999999999995 89999999999999999999998875544
No 18
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.2e-32 Score=216.95 Aligned_cols=163 Identities=96% Similarity=1.503 Sum_probs=145.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+.+|+.+.|.+.|.||+++.+...+.+++..+.+.+|||+|++.+..+++.+++++
T Consensus 11 ~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (174)
T cd01871 11 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT----------------- 73 (174)
T ss_pred CCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCC-----------------
Confidence 799999999999999999999999888877888899999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||+++++||+.+.+.|+..+....++.|++|||||+|+.+...
T Consensus 74 -------------------------------d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~ 122 (174)
T cd01871 74 -------------------------------DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 122 (174)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChh
Confidence 9999999999999999996579988887777899999999999976544
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
..+.......+.++.+++..+++++++.+|+|+||++|.|++++|+.++..
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 123 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 444444445578999999999999996699999999999999999999864
No 19
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=6.2e-32 Score=213.09 Aligned_cols=166 Identities=75% Similarity=1.282 Sum_probs=149.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|...+.+++.+.+...+.+++..+.+.+|||+|++.+..+++.++.++
T Consensus 8 ~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 70 (174)
T smart00174 8 AVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDT----------------- 70 (174)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCC-----------------
Confidence 799999999999999999999999888888888899999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+.+.+.|+..+..+.++.|++|||||+|+.....
T Consensus 71 -------------------------------d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 119 (174)
T smart00174 71 -------------------------------DVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKS 119 (174)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChh
Confidence 9999999999999999997679999988878899999999999987555
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+.+++.+++
T Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 120 TLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred hhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 455555555677899999999999997689999999999999999999998875
No 20
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.2e-32 Score=221.95 Aligned_cols=153 Identities=27% Similarity=0.507 Sum_probs=138.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|..+.|...|.+|++..+ .+.+.+++..+.+.+||++|++.|+.++..+++++
T Consensus 10 gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~a---------------- 73 (202)
T cd04120 10 GVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA---------------- 73 (202)
T ss_pred CCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCC----------------
Confidence 7999999999999999999999997655 46788899999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||+++++||+.+. .|+..+.+.. .+.|++|||||+|+.+.
T Consensus 74 --------------------------------d~iIlVfDvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~~ 120 (202)
T cd04120 74 --------------------------------KGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD 120 (202)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 8999888775 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh-CCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI-GAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.+ + ..|+|+||++|.||+++|.+++..+...
T Consensus 121 ------------~~v~~~~~~~~a~~~~~-~~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 121 ------------REISRQQGEKFAQQITG-MRFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred ------------cccCHHHHHHHHHhcCC-CEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 568888999999886 6 5899999999999999999999988653
No 21
>KOG0394|consensus
Probab=100.00 E-value=6.9e-33 Score=214.48 Aligned_cols=157 Identities=29% Similarity=0.557 Sum_probs=145.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...|..|++..+ .+.+.+|+..++++||||+||++|.++...+|+++
T Consensus 19 GVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRga---------------- 82 (210)
T KOG0394|consen 19 GVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGA---------------- 82 (210)
T ss_pred CccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCC----------------
Confidence 8999999999999999999999997666 68899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-----CCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-----STPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-----~~piilv~nK~D 154 (228)
|.+++|||+++++||+.+. .|-.++..+.+ ..|.||+|||+|
T Consensus 83 --------------------------------DcCvlvydv~~~~Sfe~L~-~Wr~EFl~qa~~~~Pe~FPFVilGNKiD 129 (210)
T KOG0394|consen 83 --------------------------------DCCVLVYDVNNPKSFENLE-NWRKEFLIQASPQDPETFPFVILGNKID 129 (210)
T ss_pred --------------------------------ceEEEEeecCChhhhccHH-HHHHHHHHhcCCCCCCcccEEEEccccc
Confidence 9999999999999999998 99999887642 469999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+...++ |.++...++.||...|-+||||+|||.+.||+++|+.+.+.++...
T Consensus 130 ~~~~~~----------r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 130 VDGGKS----------RQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred CCCCcc----------ceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 987543 8899999999999999899999999999999999999999887644
No 22
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3.9e-32 Score=218.19 Aligned_cols=166 Identities=32% Similarity=0.555 Sum_probs=143.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|...+.+|+++.+...+.+++..+.+.+|||+|++.+..++..+++++
T Consensus 9 ~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 71 (190)
T cd04144 9 GVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREG----------------- 71 (190)
T ss_pred CCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhC-----------------
Confidence 799999999999999998999999888877778899989999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl~ 156 (228)
|++|+|||+++++||+.+. .|+..+.... .+.|++|||||+|+.
T Consensus 72 -------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 72 -------------------------------EGFILVYSITSRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 9999999999999999998 8988887653 368999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC------------CCCCCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT------------VPKKKR 224 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~------------~~~~~~ 224 (228)
.. +.++..++..+++.+++ +++++||++|.||+++|.++++.+..+++. .+++++
T Consensus 120 ~~------------~~v~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (190)
T cd04144 120 YE------------REVSTEEGAALARRLGC-EFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRK 186 (190)
T ss_pred cc------------CccCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccC
Confidence 64 45777788889998994 899999999999999999999988754332 344456
Q ss_pred cccC
Q psy8274 225 CVLL 228 (228)
Q Consensus 225 ~~~~ 228 (228)
|+||
T Consensus 187 ~~~~ 190 (190)
T cd04144 187 CVIM 190 (190)
T ss_pred ceeC
Confidence 8875
No 23
>KOG0093|consensus
Probab=100.00 E-value=1.1e-32 Score=206.06 Aligned_cols=157 Identities=28% Similarity=0.545 Sum_probs=143.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
.||||||+.||....|...+..|++..+. +++--..+.+.+++|||+|++.|+.+...+|+++
T Consensus 31 svGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga---------------- 94 (193)
T KOG0093|consen 31 SVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA---------------- 94 (193)
T ss_pred CccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc----------------
Confidence 48999999999999999999999988876 3444466789999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++|++||+||.+||..+. .|...|++++ ++.|+||||||||+.++
T Consensus 95 --------------------------------mgfiLmyDitNeeSf~svq-dw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 95 --------------------------------MGFILMYDITNEESFNSVQ-DWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred --------------------------------ceEEEEEecCCHHHHHHHH-HHHHHheeeeccCceEEEEecccCCccc
Confidence 9999999999999999998 9999999998 68999999999999987
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTV 219 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~ 219 (228)
|.++.+.+..++..+| ..|||+||+.+.||+++|+.+...|-.....+
T Consensus 142 ------------Rvis~e~g~~l~~~LG-fefFEtSaK~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 142 ------------RVISHERGRQLADQLG-FEFFETSAKENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred ------------eeeeHHHHHHHHHHhC-hHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence 8899999999999999 49999999999999999999999887655443
No 24
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=1.4e-31 Score=213.83 Aligned_cols=172 Identities=55% Similarity=0.959 Sum_probs=147.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|.+.+.+|++..+...+..+ +..+.+.+|||+|++.+..+++.++.++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a---------------- 73 (187)
T cd04132 10 GCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDV---------------- 73 (187)
T ss_pred CCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCC----------------
Confidence 79999999999999999999999988877666665 7789999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||+++++||+.+.+.|+..+.+..++.|+++||||+|+....
T Consensus 74 --------------------------------d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (187)
T cd04132 74 --------------------------------DVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK 121 (187)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc
Confidence 999999999999999999757998888777789999999999997532
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC-----CCCCCCCcccC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP-----TVPKKKRCVLL 228 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~-----~~~~~~~~~~~ 228 (228)
+ ..+.++.+++..+++.+++.+++++||++|.||+++|..+++.++.... +.+++++|++|
T Consensus 122 ~--------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 122 N--------LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred c--------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 1 0145778889999999996689999999999999999999999987643 34556779876
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=4.8e-31 Score=208.81 Aligned_cols=153 Identities=26% Similarity=0.498 Sum_probs=139.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|.+.+.||+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 12 ~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~----------------- 74 (172)
T cd04141 12 GVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCG----------------- 74 (172)
T ss_pred CCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcC-----------------
Confidence 799999999999999998999999888887888899999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.||..+. .|...+.+.. +++|++|||||+|+.+.
T Consensus 75 -------------------------------d~~ilv~d~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 75 -------------------------------EGFIICYSVTDRHSFQEAS-EFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred -------------------------------CEEEEEEECCchhHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 9999999999999999998 7888887643 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.+++ +|+|+||++|.||+++|++++..+...
T Consensus 123 ------------~~v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 123 ------------RQVTTEEGRNLAREFNC-PFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred ------------CccCHHHHHHHHHHhCC-EEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 56888899999999995 899999999999999999999988753
No 26
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=5e-30 Score=202.63 Aligned_cols=163 Identities=58% Similarity=1.015 Sum_probs=142.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.|..++.+|..+.+...+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 10 ~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a----------------- 72 (173)
T cd04130 10 AVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDT----------------- 72 (173)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCC-----------------
Confidence 799999999999999999999999888888888899899999999999999999998888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+.+.+.|+..+....++.|+++||||+|+.....
T Consensus 73 -------------------------------~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 73 -------------------------------DVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN 121 (173)
T ss_pred -------------------------------cEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh
Confidence 9999999999999999986579988887666799999999999976543
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
..........+.+..+++..+++..++.+|+|+||++|.||+++|+.++.+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 172 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAILA 172 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHhh
Confidence 333333344578899999999999997699999999999999999998764
No 27
>KOG0087|consensus
Probab=99.97 E-value=4.4e-31 Score=208.81 Aligned_cols=152 Identities=32% Similarity=0.541 Sum_probs=143.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||=|+.||..+.|.-+..+|++..+. ..+.++++.++.+||||+||++|+.+...||+++
T Consensus 24 ~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA---------------- 87 (222)
T KOG0087|consen 24 AVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA---------------- 87 (222)
T ss_pred ccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc----------------
Confidence 79999999999999999999999987774 6789999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
.++++|||+|.+.+|+++. .|+.+|+.+. ++++++|||||+||.+.
T Consensus 88 --------------------------------vGAllVYDITr~~Tfenv~-rWL~ELRdhad~nivimLvGNK~DL~~l 134 (222)
T KOG0087|consen 88 --------------------------------VGALLVYDITRRQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLNHL 134 (222)
T ss_pred --------------------------------ceeEEEEechhHHHHHHHH-HHHHHHHhcCCCCeEEEEeecchhhhhc
Confidence 9999999999999999998 9999999988 57999999999999985
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
|.+..+++..+++..+ ..|+|+||+.+.||+++|..++..|.+
T Consensus 135 ------------raV~te~~k~~Ae~~~-l~f~EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 135 ------------RAVPTEDGKAFAEKEG-LFFLETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred ------------cccchhhhHhHHHhcC-ceEEEecccccccHHHHHHHHHHHHHH
Confidence 7899999999999999 699999999999999999999988864
No 28
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=6.7e-30 Score=201.45 Aligned_cols=165 Identities=66% Similarity=1.106 Sum_probs=146.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|.+.+.+|+.+.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 10 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 72 (174)
T cd04135 10 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT----------------- 72 (174)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCC-----------------
Confidence 799999999999999998899999888877888899899999999999999999988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++++|+.+.+.|+..+....++.|+++|+||+|+.+...
T Consensus 73 -------------------------------~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~ 121 (174)
T cd04135 73 -------------------------------DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPK 121 (174)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChh
Confidence 9999999999999999997679888887767899999999999976554
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..........+.++.+++..+++..++.+|+++||++|.||+++|+.+++.++
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~~ 174 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAIL 174 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHhC
Confidence 44444455556888999999999999878999999999999999999998764
No 29
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=207.02 Aligned_cols=166 Identities=30% Similarity=0.505 Sum_probs=143.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|...+.||++..+.+.+.+++..+.+.+|||+|++.+..++..+++.+
T Consensus 15 ~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~----------------- 77 (189)
T PTZ00369 15 GVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 77 (189)
T ss_pred CCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcC-----------------
Confidence 799999999999999988999999888888888999999999999999999999998888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||+.+. .|+..+.+.. ++.|+++|+||+|+...
T Consensus 78 -------------------------------d~iilv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 78 -------------------------------QGFLCVYSITSRSSFEEIA-SFREQILRVKDKDRVPMILVGNKCDLDSE 125 (189)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8988887654 47899999999998654
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCcccC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT-------VPKKKRCVLL 228 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~-------~~~~~~~~~~ 228 (228)
+.++.+++..+++.++ .+++++||++|.||+++|.++++.+....++ +++++.|+++
T Consensus 126 ------------~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (189)
T PTZ00369 126 ------------RQVSTGEGQELAKSFG-IPFLETSAKQRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL 189 (189)
T ss_pred ------------cccCHHHHHHHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeeeC
Confidence 4577778888888888 4899999999999999999999888765332 3334458765
No 30
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=7.2e-30 Score=206.86 Aligned_cols=151 Identities=25% Similarity=0.457 Sum_probs=133.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.|...|.||++..+ ...+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 5 ~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~a---------------- 68 (200)
T smart00176 5 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQG---------------- 68 (200)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCC----------------
Confidence 7999999999999999989999997555 56678889999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++|+|||++++.||..+. .|+..+.+.++++|++|||||+|+..
T Consensus 69 --------------------------------d~~ilV~D~t~~~S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~-- 113 (200)
T smart00176 69 --------------------------------QCAIIMFDVTARVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKD-- 113 (200)
T ss_pred --------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccc--
Confidence 9999999999999999998 89999998877899999999999864
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+..++ ..+++..+ ..|+|+||++|.||+++|.+++..+...
T Consensus 114 -----------~~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 114 -----------RKVKAKS-ITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred -----------ccCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 2244433 46777778 4899999999999999999999988754
No 31
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=1.1e-29 Score=205.40 Aligned_cols=153 Identities=29% Similarity=0.550 Sum_probs=137.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|.+.+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 16 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a---------------- 79 (199)
T cd04110 16 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGT---------------- 79 (199)
T ss_pred CCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCC----------------
Confidence 7999999999999999888999997555 46677788889999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++++|||+++++||..+. .|+..+....+..|++|||||+|+...
T Consensus 80 --------------------------------~~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~~- 125 (199)
T cd04110 80 --------------------------------HGVIVVYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPER- 125 (199)
T ss_pred --------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc-
Confidence 9999999999999999998 899999887778999999999999764
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.++ .+++++||++|.||+++|+++.+.++..
T Consensus 126 -----------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 126 -----------KVVETEDAYKFAGQMG-ISLFETSAKENINVEEMFNCITELVLRA 169 (199)
T ss_pred -----------cccCHHHHHHHHHHcC-CEEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence 4567788889999888 5899999999999999999999988764
No 32
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=8.8e-30 Score=206.25 Aligned_cols=155 Identities=25% Similarity=0.410 Sum_probs=137.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|...+.||++..+ ...+.++ +..+.+.+||++|++.+..+++.+++++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a--------------- 74 (201)
T cd04107 10 GVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGA--------------- 74 (201)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCC---------------
Confidence 7999999999999999999999997655 4566777 8889999999999999999999899988
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKL 153 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~ 153 (228)
+++++|||+++++||+.+. .|+..+.... .++|++|||||+
T Consensus 75 ---------------------------------~~~ilv~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~ 120 (201)
T cd04107 75 ---------------------------------VGAIIVFDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKC 120 (201)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECC
Confidence 9999999999999999997 9988887531 468999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
|+.+. +.++.+++..+++.+++.+++++||++|.||+++|+++++.+....
T Consensus 121 Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 121 DLKKR------------LAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred Ccccc------------cccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99753 4578889999999999668999999999999999999999887643
No 33
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=1e-29 Score=197.88 Aligned_cols=150 Identities=28% Similarity=0.543 Sum_probs=134.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|...+.||+++.+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (163)
T cd04136 11 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNG----------------- 73 (163)
T ss_pred CCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcC-----------------
Confidence 799999999999999998999999877778888899999999999999999999988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|+.+. .|+..+.... .+.|+++|+||+|+...
T Consensus 74 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 74 -------------------------------QGFVLVYSITSQSSFNDLQ-DLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8888887653 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++.+++..+++.++ .+++++||++|.|++++|.++++.+
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 122 ------------RVVSREEGQALARQWG-CPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ------------ceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHhc
Confidence 4467777888888888 6999999999999999999998865
No 34
>KOG0086|consensus
Probab=99.97 E-value=1.2e-30 Score=196.58 Aligned_cols=155 Identities=29% Similarity=0.511 Sum_probs=143.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|.|||||+.+|+.++|.++...|++..+ ++.+.+.++.++++||||+||++|+++...||+++
T Consensus 19 GtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA---------------- 82 (214)
T KOG0086|consen 19 GTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA---------------- 82 (214)
T ss_pred CCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc----------------
Confidence 7899999999999999999999998887 46678899999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
-+.++|||+|+++||..+. .|+..++... +++-++|+|||.||...
T Consensus 83 --------------------------------AGAlLVYD~TsrdsfnaLt-nWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 83 --------------------------------AGALLVYDITSRDSFNALT-NWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred --------------------------------cceEEEEeccchhhHHHHH-HHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 9999999999999999999 9999998775 46778899999999986
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
|.++..++.+|+.+... -++|+||++|+||++.|-...+.|+...+
T Consensus 130 ------------R~VtflEAs~FaqEnel-~flETSa~TGeNVEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 130 ------------REVTFLEASRFAQENEL-MFLETSALTGENVEEAFLKCARTILNKIE 175 (214)
T ss_pred ------------hhhhHHHHHhhhcccce-eeeeecccccccHHHHHHHHHHHHHHHHh
Confidence 67999999999999984 89999999999999999999999886543
No 35
>KOG0091|consensus
Probab=99.97 E-value=7.2e-31 Score=199.62 Aligned_cols=151 Identities=29% Similarity=0.463 Sum_probs=136.0
Q ss_pred CChhhhHHhhhhCCCCCCCCceeeeccc-eeEEE-cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 2 VGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 2 vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
||||||++.|+.+.|.+-..||++.++. ..+++ +|..+++++|||+||++|+++..+||++.
T Consensus 19 vgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrns---------------- 82 (213)
T KOG0091|consen 19 VGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNS---------------- 82 (213)
T ss_pred ccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcc----------------
Confidence 8999999999999999999999976664 44555 78899999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCE-EEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPI-ILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~pi-ilv~nK~Dl~ 156 (228)
-++++|||+||++||+++. .|+.+...+- +..+| .|||+|+||.
T Consensus 83 --------------------------------vgvllvyditnr~sfehv~-~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 83 --------------------------------VGVLLVYDITNRESFEHVE-NWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred --------------------------------cceEEEEeccchhhHHHHH-HHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 9999999999999999999 9998877664 45555 4999999999
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. |+|+.+|++.++..+| ..|+|+||++|.||++.|+.+.+.|..
T Consensus 130 Sq------------RqVt~EEaEklAa~hg-M~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 130 SQ------------RQVTAEEAEKLAASHG-MAFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred hh------------ccccHHHHHHHHHhcC-ceEEEecccCCCcHHHHHHHHHHHHHH
Confidence 75 8899999999999999 589999999999999999999988764
No 36
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.9e-29 Score=203.74 Aligned_cols=160 Identities=44% Similarity=0.740 Sum_probs=126.1
Q ss_pred CCChhhhHH-hhhhC-----CCCCCCCceee--ecccee--------EEEcCeEEeeeeeeCCCCcccccCCCCcccccc
Q psy8274 1 AVGKTCLLI-SYTTN-----AFPGEYIPTVF--DNYSAN--------VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTG 64 (228)
Q Consensus 1 gvGKTsli~-~~~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 64 (228)
|||||||+. ++.++ .|...|.||++ +.|... ..+++..+.+.+|||+|++. .+++.+++++
T Consensus 12 ~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~a- 88 (195)
T cd01873 12 AVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRS- 88 (195)
T ss_pred CcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCC-
Confidence 799999995 66544 35667889985 444322 25789999999999999975 3456677777
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPST 144 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~ 144 (228)
|++++|||++++.||+.+.+.|+..+....++.
T Consensus 89 -----------------------------------------------d~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~ 121 (195)
T cd01873 89 -----------------------------------------------DVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRV 121 (195)
T ss_pred -----------------------------------------------CEEEEEEECCChhHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999756999998877789
Q ss_pred CEEEEEeCCCCCCchHHHHH-------HhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 145 PIILVGTKLDLRDDKETIEK-------LKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 145 piilv~nK~Dl~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
|++|||||+||.+....... ......+.++.+++..+++.+|+ +|+||||++|.||+++|+.++++
T Consensus 122 piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 122 PVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 99999999999752110000 00011377999999999999996 99999999999999999999874
No 37
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1.5e-29 Score=198.42 Aligned_cols=152 Identities=29% Similarity=0.558 Sum_probs=135.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|...+.+|++..+. ..+.+++..+.+.+||++|++.+..++..+++++
T Consensus 12 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 75 (166)
T cd04122 12 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGA---------------- 75 (166)
T ss_pred CCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC----------------
Confidence 79999999999999999888889876664 5677889899999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||+.+. .|+..+.... ++.|+++||||+|+...
T Consensus 76 --------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 76 --------------------------------AGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 9998887654 57899999999999765
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.||+++|.+++..+.+
T Consensus 123 ------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 123 ------------RDVTYEEAKQFADENG-LLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred ------------cCcCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578889999999998 489999999999999999999988754
No 38
>KOG0083|consensus
Probab=99.97 E-value=6e-31 Score=194.07 Aligned_cols=156 Identities=29% Similarity=0.527 Sum_probs=142.9
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
++|||||+-||..+.|. +...+|++.+|. +.+.++++++++++|||+||++|+++...||+++
T Consensus 7 ~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda--------------- 71 (192)
T KOG0083|consen 7 CTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDA--------------- 71 (192)
T ss_pred ccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhccc---------------
Confidence 58999999999988884 678899988785 6678899999999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~ 157 (228)
|+.+++||++|..||+++. .|+.+|+++. ..+.++++|||+|+..
T Consensus 72 ---------------------------------~allllydiankasfdn~~-~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 72 ---------------------------------DALLLLYDIANKASFDNCQ-AWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred ---------------------------------ceeeeeeecccchhHHHHH-HHHHHHHHHHHhhHhHhhhccccccch
Confidence 9999999999999999998 9999999986 4688999999999987
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
+ |.+..+++.++++.+| +||.|+||++|.||+..|..+.+.+++.+-.
T Consensus 118 e------------r~v~~ddg~kla~~y~-ipfmetsaktg~nvd~af~~ia~~l~k~~~~ 165 (192)
T KOG0083|consen 118 E------------RAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLAFLAIAEELKKLKMG 165 (192)
T ss_pred h------------hccccchHHHHHHHHC-CCceeccccccccHhHHHHHHHHHHHHhccC
Confidence 5 7899999999999999 6999999999999999999999998876543
No 39
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=5.9e-29 Score=196.26 Aligned_cols=164 Identities=57% Similarity=1.032 Sum_probs=142.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.|.+.+.||+++.+...+.+++..+.+.+|||+|++.+..++...+.++
T Consensus 11 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (175)
T cd01870 11 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT----------------- 73 (175)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCC-----------------
Confidence 799999999999999998999999887777788899999999999999999988887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++++|+.+.+.|+..+.+..++.|+++|+||+|+.....
T Consensus 74 -------------------------------d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 122 (175)
T cd01870 74 -------------------------------DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122 (175)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh
Confidence 9999999999999999997679988888777899999999999976544
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..+.......+.+...++..+++.++..++++|||++|.||+++|.++.+.+
T Consensus 123 ~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 123 TRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 4444444444677888999999998877899999999999999999998765
No 40
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=1.8e-29 Score=197.30 Aligned_cols=151 Identities=29% Similarity=0.528 Sum_probs=135.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|...+.||+++.+...+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 11 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (164)
T cd04175 11 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNG----------------- 73 (164)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhC-----------------
Confidence 799999999999999988899999888888888899999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|+.+. +|+..+.... .+.|++||+||+|+...
T Consensus 74 -------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 74 -------------------------------QGFVLVYSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 9999999999999999998 8888887643 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++ .+++++||++|.|++++|.++++.+-
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 122 ------------RVVGKEQGQNLARQWG-CAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred ------------cEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 4567777888888888 48999999999999999999998664
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=1.4e-29 Score=197.21 Aligned_cols=151 Identities=44% Similarity=0.813 Sum_probs=140.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|...+.+|+ .+.+...+.+++..+.+++||++|++.+..++...+.++
T Consensus 9 ~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~---------------- 72 (162)
T PF00071_consen 9 GVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNS---------------- 72 (162)
T ss_dssp TSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTE----------------
T ss_pred CCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 799999999999999999999999 566678889999999999999999998887777778777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++|+|||+++++||+.+. .|+..+....+ +.|++|||||.|+.+.
T Consensus 73 --------------------------------~~~ii~fd~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~ 119 (162)
T PF00071_consen 73 --------------------------------DAIIIVFDVTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDE 119 (162)
T ss_dssp --------------------------------SEEEEEEETTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGG
T ss_pred --------------------------------ccccccccccccccccccc-cccccccccccccccceeeecccccccc
Confidence 9999999999999999999 99999999987 6999999999999874
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++ .+|+|+||+++.||.++|..+++.++
T Consensus 120 ------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 120 ------------REVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp ------------SSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ------------ccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999 79999999999999999999999875
No 42
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=3.8e-29 Score=195.59 Aligned_cols=149 Identities=31% Similarity=0.557 Sum_probs=133.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 10 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~---------------- 73 (161)
T cd04117 10 GVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRA---------------- 73 (161)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCC----------------
Confidence 7999999999999999988999997655 46778888889999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||+.+. .|+..+....+ +.|+++||||.|+...
T Consensus 74 --------------------------------~~~i~v~d~~~~~sf~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 74 --------------------------------QGIFLVYDISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQK 120 (161)
T ss_pred --------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 99998887654 6899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.++.+++..+++.+++ +|+|+||++|.||+++|.++++.
T Consensus 121 ------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 121 ------------RQVGDEQGNKLAKEYGM-DFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ------------cCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHhh
Confidence 56788899999999994 89999999999999999999864
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=5.9e-29 Score=203.59 Aligned_cols=152 Identities=26% Similarity=0.403 Sum_probs=133.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcC-eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDG-KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|.++.|...|.||++ +.+...+.+++ ..+.+.+||++|++.+..++..+++++
T Consensus 10 ~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~a--------------- 74 (215)
T cd04109 10 AVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGA--------------- 74 (215)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcC---------------
Confidence 7999999999999999999999996 44456677754 579999999999998888888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC----CCCEEEEEeCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP----STPIILVGTKLD 154 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~----~~piilv~nK~D 154 (228)
|++|+|||+++++||+.+. .|+..+.+... ++|+++|+||+|
T Consensus 75 ---------------------------------d~iilV~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~D 120 (215)
T cd04109 75 ---------------------------------HAVFLVYDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTD 120 (215)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECcc
Confidence 9999999999999999998 89999887642 468999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+. +.++.+++..+++.+++ +++++||++|.||+++|+++...+..
T Consensus 121 L~~~------------~~v~~~~~~~~~~~~~~-~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 121 LEHN------------RTVKDDKHARFAQANGM-ESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cccc------------cccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9754 56888889999999994 89999999999999999999998864
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=5.9e-29 Score=198.72 Aligned_cols=159 Identities=26% Similarity=0.482 Sum_probs=133.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.|.||++..+ .+.+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 10 ~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a---------------- 73 (182)
T cd04128 10 QIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDA---------------- 73 (182)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCC----------------
Confidence 7999999999999999999999997655 46788899999999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||+.+. .|+..+.+..+ ..| ++||||+|+...
T Consensus 74 --------------------------------~~iilv~D~t~~~s~~~i~-~~~~~~~~~~~~~~p-ilVgnK~Dl~~~ 119 (182)
T cd04128 74 --------------------------------VAILFMFDLTRKSTLNSIK-EWYRQARGFNKTAIP-ILVGTKYDLFAD 119 (182)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCE-EEEEEchhcccc
Confidence 9999999999999999998 89999887654 455 688999999642
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.+..+ .+.+ .+++..+++.++ .+++++||++|.||+++|.++.+.+.....
T Consensus 120 ~~~~~------~~~~-~~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~ 170 (182)
T cd04128 120 LPPEE------QEEI-TKQARKYAKAMK-APLIFCSTSHSINVQKIFKIVLAKAFDLPL 170 (182)
T ss_pred ccchh------hhhh-HHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Confidence 11000 0122 367888999999 589999999999999999999998876444
No 45
>KOG0095|consensus
Probab=99.96 E-value=4.8e-30 Score=192.57 Aligned_cols=151 Identities=27% Similarity=0.490 Sum_probs=138.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++-|++-.-.|++..+ -+++.++|.+++++||||+||++|+++..+||+.+
T Consensus 17 gvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa---------------- 80 (213)
T KOG0095|consen 17 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA---------------- 80 (213)
T ss_pred CcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc----------------
Confidence 7999999999999999988899998777 58899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++|+|||++-..||+.+. .|+.+++++. .++-.||||||.|+.+.
T Consensus 81 --------------------------------halilvydiscqpsfdclp-ewlreie~yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 81 --------------------------------HALILVYDISCQPSFDCLP-EWLREIEQYANNKVLKILVGNKIDLADR 127 (213)
T ss_pred --------------------------------ceEEEEEecccCcchhhhH-HHHHHHHHHhhcceEEEeeccccchhhh
Confidence 9999999999999999999 9999999986 46777999999999986
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
|.++..-+..|.+... .-|+|+||+..+||+.+|..+.-.+.
T Consensus 128 ------------revp~qigeefs~~qd-myfletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 128 ------------REVPQQIGEEFSEAQD-MYFLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred ------------hhhhHHHHHHHHHhhh-hhhhhhcccchhhHHHHHHHHHHHHH
Confidence 4578788888888877 57999999999999999999887665
No 46
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=6.4e-29 Score=203.99 Aligned_cols=160 Identities=24% Similarity=0.382 Sum_probs=126.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.. +.+|++..+... ....+.+.+||++|++.+..++..+++++
T Consensus 10 ~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~a----------------- 68 (220)
T cd04126 10 NVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGA----------------- 68 (220)
T ss_pred CCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccC-----------------
Confidence 799999999999999974 678886544311 22457899999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-CCCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~ 159 (228)
|++|+|||+++++||..+. .|+..+.+. ..+.|++|||||+||.+..
T Consensus 69 -------------------------------d~~IlV~Dvt~~~Sf~~l~-~~~~~l~~~~~~~~piIlVgNK~DL~~~~ 116 (220)
T cd04126 69 -------------------------------AAVILTYDVSNVQSLEELE-DRFLGLTDTANEDCLFAVVGNKLDLTEEG 116 (220)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 9999999999999999998 666555554 3578999999999997511
Q ss_pred HHH-------HHHhhccCccccHHHHHHHHHHhCC-------------ceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 160 ETI-------EKLKEKKLAPITYPQGLSMAKEIGA-------------VKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 160 ~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~-------------~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
... ........+.++.+++..++++++. .+|+|+||++|.||+++|..++..++
T Consensus 117 ~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 000 0000111367999999999999862 47999999999999999999998776
No 47
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=1.8e-28 Score=196.43 Aligned_cols=176 Identities=52% Similarity=0.868 Sum_probs=146.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||+++|..+.|...+.+|+.+.+...+.+++..+.+.+||++|++.+....+..+..+
T Consensus 11 g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a----------------- 73 (187)
T cd04129 11 ACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKA----------------- 73 (187)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCC-----------------
Confidence 799999999999999988888888877777778888889999999999988876666666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
++++++||++++++|+.+...|+..+.++.++.|++|||||+|+.+...
T Consensus 74 -------------------------------~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (187)
T cd04129 74 -------------------------------HVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAV 122 (187)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcc
Confidence 9999999999999999997679999988777899999999999864211
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCCCCCccc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVL 227 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~ 227 (228)
..+. ....+.++.+++..+++.+++.+|+++||++|.||+++|+++.+.++..+++.|... ||+
T Consensus 123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~-~~~ 186 (187)
T cd04129 123 AKEE--YRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVRKSEPGAG-CCI 186 (187)
T ss_pred cccc--cccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcccCcccccC-ccc
Confidence 1100 111256777889999999997789999999999999999999999998888766654 544
No 48
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=9.3e-29 Score=203.13 Aligned_cols=151 Identities=25% Similarity=0.419 Sum_probs=132.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.|...+.+|++..+ ...+..++..+.+.+||++|++.+..++..+++++
T Consensus 23 gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 86 (219)
T PLN03071 23 GTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG---------------- 86 (219)
T ss_pred CCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc----------------
Confidence 7999999999999999999999996554 45667778889999999999999999999889988
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++|+|||+++++||..+. .|+..+.....+.|++|||||+|+...
T Consensus 87 --------------------------------~~~ilvfD~~~~~s~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~- 132 (219)
T PLN03071 87 --------------------------------QCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR- 132 (219)
T ss_pred --------------------------------cEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhhhhc-
Confidence 9999999999999999998 999999887778999999999999642
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+..+++ .+++..+ .+|+++||++|.||+++|.+++..++..
T Consensus 133 ------------~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 133 ------------QVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred ------------cCCHHHH-HHHHhcC-CEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 3444444 6777777 5899999999999999999999998764
No 49
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=8.9e-29 Score=193.36 Aligned_cols=146 Identities=26% Similarity=0.358 Sum_probs=122.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.+.+.|+ +..+...+.+++..+.+.+||++|++.. .+++.+
T Consensus 10 gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~----------------- 66 (158)
T cd04103 10 QSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWV----------------- 66 (158)
T ss_pred CCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcC-----------------
Confidence 79999999999999998777665 4455677888999999999999999742 234555
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++|++||+.+. .|+..+..+. .+.|++|||||+|+...
T Consensus 67 -------------------------------~~~ilv~d~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 114 (158)
T cd04103 67 -------------------------------DAVIFVFSLENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAISES 114 (158)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhhhc
Confidence 9999999999999999998 8999998775 46899999999998632
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. .+.++.+++..+++..+...|+||||++|.||+++|.++++.
T Consensus 115 ~----------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 115 N----------PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred C----------CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 1 156888899999988754589999999999999999999865
No 50
>KOG0088|consensus
Probab=99.96 E-value=5.5e-30 Score=193.93 Aligned_cols=152 Identities=28% Similarity=0.549 Sum_probs=140.9
Q ss_pred CChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 2 vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
||||||+-||+.+.|...+..|+..+| .+.+.+.+....+.||||+||++|-.+-|.||++.
T Consensus 24 VGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS----------------- 86 (218)
T KOG0088|consen 24 VGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS----------------- 86 (218)
T ss_pred cchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC-----------------
Confidence 899999999999999999999996555 67888889999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~~ 159 (228)
+++++|||+||++||+.+. .|..+++.... .+.+++||||+||...
T Consensus 87 -------------------------------nGalLVyDITDrdSFqKVK-nWV~Elr~mlGnei~l~IVGNKiDLEee- 133 (218)
T KOG0088|consen 87 -------------------------------NGALLVYDITDRDSFQKVK-NWVLELRTMLGNEIELLIVGNKIDLEEE- 133 (218)
T ss_pred -------------------------------CceEEEEeccchHHHHHHH-HHHHHHHHHhCCeeEEEEecCcccHHHh-
Confidence 9999999999999999999 99999998874 5788999999999986
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|.++.+++..+++.-| ..|+++||+.+.||.++|+.+....++.
T Consensus 134 -----------R~Vt~qeAe~YAesvG-A~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 134 -----------RQVTRQEAEAYAESVG-ALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred -----------hhhhHHHHHHHHHhhc-hhheecccccccCHHHHHHHHHHHHHHH
Confidence 7899999999999999 5899999999999999999998887754
No 51
>KOG0395|consensus
Probab=99.96 E-value=6.9e-29 Score=200.17 Aligned_cols=154 Identities=32% Similarity=0.548 Sum_probs=142.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||+|+.+|+++.|.+.|.||+++.|.+.+.+++..+.++|+||+|++.+..+...+..+.
T Consensus 13 gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~----------------- 75 (196)
T KOG0395|consen 13 GVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNG----------------- 75 (196)
T ss_pred CCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccC-----------------
Confidence 799999999999999999999999999999999999999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++||+++|+.||+.+. .+...|.+.. ..+|++|||||+|+.+.
T Consensus 76 -------------------------------~gF~lVysitd~~SF~~~~-~l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 76 -------------------------------DGFLLVYSITDRSSFEEAK-QLREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred -------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 9999999999999999998 8877775432 46899999999999985
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
|.++.+++..++..++| +|+|+||+.+.+|+++|..+++.+-.++
T Consensus 124 ------------R~V~~eeg~~la~~~~~-~f~E~Sak~~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 124 ------------RQVSEEEGKALARSWGC-AFIETSAKLNYNVDEVFYELVREIRLPR 168 (196)
T ss_pred ------------cccCHHHHHHHHHhcCC-cEEEeeccCCcCHHHHHHHHHHHHHhhh
Confidence 67999999999999997 5999999999999999999999887633
No 52
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=1.4e-28 Score=191.99 Aligned_cols=150 Identities=31% Similarity=0.559 Sum_probs=133.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|.+.+.+|+++.+...+.+++..+.+.+||++|++.+..+++.++.++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 73 (163)
T cd04176 11 GVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG----------------- 73 (163)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhC-----------------
Confidence 799999999999999998899998777777888899999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 74 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 74 -------------------------------QGFIVVYSLVNQQTFQDIK-PMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 9999999999999999998 8888887653 47999999999998753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.+...++..+++.++ .+++++||++|.|++++|.++.+.+
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 122 ------------REVSSAEGRALAEEWG-CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ------------CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 4466677888888888 4899999999999999999998754
No 53
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.7e-28 Score=196.54 Aligned_cols=153 Identities=23% Similarity=0.417 Sum_probs=135.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 10 ~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~---------------- 73 (188)
T cd04125 10 GVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGA---------------- 73 (188)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCC----------------
Confidence 7999999999999999888999997655 46678888899999999999999888888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.... ...|+++||||+|+.+.
T Consensus 74 --------------------------------d~iilv~d~~~~~s~~~i~-~~~~~i~~~~~~~~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 74 --------------------------------HGYLLVYDVTDQESFENLK-FWINEINRYARENVIKVIVANKSDLVNN 120 (188)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCCCccc
Confidence 9999999999999999998 8999998765 46899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++..++ +++++||++|.|++++|.++++.++..
T Consensus 121 ------------~~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 121 ------------KVVDSNIAKSFCDSLNI-PFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred ------------ccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45778888899988885 899999999999999999999988754
No 54
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=1.6e-28 Score=192.54 Aligned_cols=148 Identities=26% Similarity=0.468 Sum_probs=129.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.||++..+...+..++..+.+.+||++|++.+..++..++..+
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (165)
T cd04140 11 GVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKG----------------- 73 (165)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcC-----------------
Confidence 799999999999999988899999877777777788889999999999999887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl~ 156 (228)
+++++|||+++++||+.+. .|+..+.+.. ++.|++||+||+|+.
T Consensus 74 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 74 -------------------------------HAFILVYSVTSKQSLEELK-PIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 9999999999999999998 8887776642 468999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
.. +.+..+++..++..+++ +|+|+||++|.||+++|++++.
T Consensus 122 ~~------------~~v~~~~~~~~~~~~~~-~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 122 HK------------REVSSNEGAACATEWNC-AFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred cc------------CeecHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHHHHHh
Confidence 64 45777788888988885 8999999999999999999975
No 55
>KOG0081|consensus
Probab=99.96 E-value=8.1e-30 Score=193.15 Aligned_cols=153 Identities=33% Similarity=0.577 Sum_probs=138.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEE---------cCeEEeeeeeeCCCCcccccCCCCccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV---------DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~ 70 (228)
||||||++.+|+.+.|......|++.++. +++.. .++.+.+++|||+||++|+++...+|+++
T Consensus 19 GVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDA------- 91 (219)
T KOG0081|consen 19 GVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDA------- 91 (219)
T ss_pred CCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhh-------
Confidence 79999999999999999999999987774 55544 25689999999999999999999999999
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIIL 148 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piil 148 (228)
.+++++||+|+..||.++. .|+..++.+ ++++.|+|
T Consensus 92 -----------------------------------------MGFlLiFDlT~eqSFLnvr-nWlSQL~~hAYcE~PDivl 129 (219)
T KOG0081|consen 92 -----------------------------------------MGFLLIFDLTSEQSFLNVR-NWLSQLQTHAYCENPDIVL 129 (219)
T ss_pred -----------------------------------------ccceEEEeccchHHHHHHH-HHHHHHHHhhccCCCCEEE
Confidence 9999999999999999998 999998854 57888999
Q ss_pred EEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 149 VGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 149 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+|||+||.+. |.++..++..+++++| +||||+||.+|.||++..+-++..+++.
T Consensus 130 cGNK~DL~~~------------R~Vs~~qa~~La~kyg-lPYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 130 CGNKADLEDQ------------RVVSEDQAAALADKYG-LPYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred EcCccchhhh------------hhhhHHHHHHHHHHhC-CCeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 9999999986 7899999999999999 6999999999999999988888877754
No 56
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=2.3e-28 Score=191.56 Aligned_cols=151 Identities=28% Similarity=0.577 Sum_probs=133.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|...+.+|++..+ ...+..++..+.+.+||++|++.+..++..+++++
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~---------------- 74 (165)
T cd01865 11 SVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGA---------------- 74 (165)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCC----------------
Confidence 7999999999999999988999997555 34566788889999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|+.+. .|+..+..+. +..|+++||||+|+...
T Consensus 75 --------------------------------~~~l~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 75 --------------------------------MGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred --------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 9999999999999999998 8999988776 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+++..+++.+++ +++++||++|.|++++|+++...+.
T Consensus 122 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 122 ------------RVVSSERGRQLADQLGF-EFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred ------------cccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44677788888888885 8999999999999999999988654
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=1.7e-28 Score=192.63 Aligned_cols=152 Identities=29% Similarity=0.579 Sum_probs=134.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|.+.+.+|++..+. ..+.+++..+.+.+||++|++.+..++..+++++
T Consensus 13 ~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~a---------------- 76 (167)
T cd01867 13 GVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA---------------- 76 (167)
T ss_pred CCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCC----------------
Confidence 79999999999999999999999976553 5677888889999999999998888887777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.... .+.|+++||||+|+.+.
T Consensus 77 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 77 --------------------------------MGIILVYDITDEKSFENIR-NWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred --------------------------------CEEEEEEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 8999988765 46899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.|++++|.+++++++.
T Consensus 124 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 124 ------------RVVSKEEGEALADEYGI-KFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred ------------cCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 45777888899999995 89999999999999999999998864
No 58
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=1.5e-28 Score=194.84 Aligned_cols=152 Identities=34% Similarity=0.579 Sum_probs=132.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc----------CeEEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD----------GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|||||||+++|.++.|.+.+.+|++..+. ..+.+. +..+.+.+||++|++.+..++..+++++
T Consensus 14 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~------ 87 (180)
T cd04127 14 GVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDA------ 87 (180)
T ss_pred CCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCC------
Confidence 79999999999999999999999975553 444443 4578999999999999988888888888
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPII 147 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~pii 147 (228)
|++++|||+++++||..+. .|+..+.... ++.|++
T Consensus 88 ------------------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pii 124 (180)
T cd04127 88 ------------------------------------------MGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIV 124 (180)
T ss_pred ------------------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEE
Confidence 9999999999999999998 9999887653 478999
Q ss_pred EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 148 LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 148 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+||||+|+.+. +.++.+++..+++.+++ +++++||++|.|++++|+++++.+++
T Consensus 125 iv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 125 LCGNKADLEDQ------------RQVSEEQAKALADKYGI-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EEEeCccchhc------------CccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999764 45788889999999995 89999999999999999999987764
No 59
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=3.2e-28 Score=195.63 Aligned_cols=154 Identities=32% Similarity=0.592 Sum_probs=134.4
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+.+.|. +.+.+|++..+. ..+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 10 ~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a--------------- 74 (191)
T cd04112 10 GVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDA--------------- 74 (191)
T ss_pred CCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCC---------------
Confidence 79999999999999885 467888876664 4578889999999999999998888887788877
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~ 157 (228)
|++++|||++++++|+.+. .|+..+..... ..|+++|+||+|+..
T Consensus 75 ---------------------------------d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 75 ---------------------------------HALLLLYDITNKASFDNIR-AWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 9999999999999999998 89999988763 789999999999975
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
. +.+..+++..+++.+++ +|+++||++|.|++++|.++.+.+....
T Consensus 121 ~------------~~~~~~~~~~l~~~~~~-~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 121 E------------RVVKREDGERLAKEYGV-PFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred c------------cccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 4 45777888899998884 8999999999999999999999887653
No 60
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=4.9e-28 Score=190.36 Aligned_cols=150 Identities=25% Similarity=0.461 Sum_probs=129.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.+...+.+|++..+ ...+..++..+.+.+||++|++.+..++..++..+
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 73 (166)
T cd00877 10 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGG---------------- 73 (166)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCC----------------
Confidence 7999999999999999888999996554 45566788889999999999999888888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++|+|||+++++||..+. .|+..+.+...+.|+++||||+|+.+.
T Consensus 74 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~~- 119 (166)
T cd00877 74 --------------------------------QCAIIMFDVTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKDR- 119 (166)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhcccc-
Confidence 9999999999999999998 899999988778999999999999742
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+. .+...+++..+ .+++|+||++|.|++++|+++++.++.
T Consensus 120 ------------~~~-~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 120 ------------KVK-AKQITFHRKKN-LQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ------------cCC-HHHHHHHHHcC-CEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 233 23456666666 589999999999999999999998864
No 61
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=3e-28 Score=190.78 Aligned_cols=151 Identities=30% Similarity=0.603 Sum_probs=134.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 12 ~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~---------------- 75 (166)
T cd01869 12 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA---------------- 75 (166)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcC----------------
Confidence 7999999999999999888889887555 46677888889999999999999888888788877
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.... ++.|+++|+||+|+...
T Consensus 76 --------------------------------~~ii~v~d~~~~~s~~~l~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 76 --------------------------------HGIIIVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred --------------------------------CEEEEEEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 9999999999999999998 8999998776 57899999999998764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.+++ +++++||++|.|++++|.++++.+.
T Consensus 123 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 123 ------------RVVDYSEAQEFADELGI-PFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred ------------cCCCHHHHHHHHHHcCC-eEEEEECCCCcCHHHHHHHHHHHHH
Confidence 45778889999999995 8999999999999999999999875
No 62
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=3.2e-28 Score=192.26 Aligned_cols=153 Identities=30% Similarity=0.538 Sum_probs=132.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.|.||++..+. ..+.+++..+.+.+||++|++.+..++..+++++
T Consensus 10 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a---------------- 73 (170)
T cd04108 10 SVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGA---------------- 73 (170)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCC----------------
Confidence 79999999999999999999999976664 6678889899999999999999999998889888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-C-CCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-P-STPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~-~~piilv~nK~Dl~~ 157 (228)
|++++|||++++++|..+. .|+..+.+.. + ..|+++|+||+|+..
T Consensus 74 --------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 74 --------------------------------QAIIIVFDLTDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 9999999999999999998 8999876543 3 478999999999965
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
... .....+++..+++.+++ +++++||++|.||+++|+.+++.+.
T Consensus 121 ~~~----------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 121 PAQ----------YALMEQDAIKLAAEMQA-EYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred ccc----------ccccHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 321 22445677888888884 8999999999999999999998764
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=3.7e-28 Score=188.40 Aligned_cols=149 Identities=34% Similarity=0.578 Sum_probs=132.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.||.++.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~----------------- 73 (162)
T cd04138 11 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 73 (162)
T ss_pred CCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcC-----------------
Confidence 799999999999999998999999888877888899889999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++.+|..+. .|+..+.+.. .+.|++||+||+|+..
T Consensus 74 -------------------------------~~~i~v~~~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~- 120 (162)
T cd04138 74 -------------------------------EGFLCVFAINSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAA- 120 (162)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc-
Confidence 9999999999999999997 8888877654 4689999999999976
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.+...++..+++.+++ +++++||++|.|++++|+++++.+
T Consensus 121 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 121 ------------RTVSSRQGQDLAKSYGI-PYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ------------ceecHHHHHHHHHHhCC-eEEEecCCCCCCHHHHHHHHHHHh
Confidence 23666778888888884 899999999999999999998754
No 64
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=3.3e-28 Score=189.73 Aligned_cols=151 Identities=25% Similarity=0.531 Sum_probs=134.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|...+.||++..+ ...+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 73 (168)
T cd04119 10 GVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDT---------------- 73 (168)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccC----------------
Confidence 7999999999999999999999997666 46678889999999999999998888888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC------CCCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC------PSTPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~------~~~piilv~nK~ 153 (228)
|++|+|||++++++|..+. .|+..+.+.. .+.|+++|+||+
T Consensus 74 --------------------------------d~~ilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~ 120 (168)
T cd04119 74 --------------------------------QGVLLVYDVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKI 120 (168)
T ss_pred --------------------------------CEEEEEEECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEch
Confidence 9999999999999999998 8999988764 358999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
|+.+. +.++.+++..+++.++ .+++++||++|.|++++|+++++.++
T Consensus 121 Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 121 DLTKH------------RAVSEDEGRLWAESKG-FKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred hcccc------------cccCHHHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99753 4577888888999888 58999999999999999999998876
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=3.7e-28 Score=189.57 Aligned_cols=151 Identities=29% Similarity=0.544 Sum_probs=133.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 10 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~----------------- 72 (164)
T smart00173 10 GVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTG----------------- 72 (164)
T ss_pred CCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhC-----------------
Confidence 799999999999999998899999888888888899999999999999999888887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.+.. .+.|+++||||+|+...
T Consensus 73 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 73 -------------------------------EGFLLVYSITDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8887776543 36899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++++.+.
T Consensus 121 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 121 ------------RVVSTEEGKELARQWG-CPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred ------------ceEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 4467778888998888 69999999999999999999998765
No 66
>KOG0097|consensus
Probab=99.96 E-value=5e-29 Score=185.69 Aligned_cols=155 Identities=28% Similarity=0.527 Sum_probs=143.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+.+|+...|..+...|++..+. ..+.+.|++++++||||+|+++|+.+..++|+++
T Consensus 21 gvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga---------------- 84 (215)
T KOG0097|consen 21 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA---------------- 84 (215)
T ss_pred cccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc----------------
Confidence 79999999999999999999999998886 4568999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-CCCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~ 158 (228)
.+.++|||++.++++.++. .|+...++. +++..++|+|||.||...
T Consensus 85 --------------------------------agalmvyditrrstynhls-swl~dar~ltnpnt~i~lignkadle~q 131 (215)
T KOG0097|consen 85 --------------------------------AGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLESQ 131 (215)
T ss_pred --------------------------------cceeEEEEehhhhhhhhHH-HHHhhhhccCCCceEEEEecchhhhhhc
Confidence 9999999999999999998 999887765 467789999999999986
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
|.++.+++..|+++.| .-|+|+||++|.||++.|-+...+|.+..+
T Consensus 132 ------------rdv~yeeak~faeeng-l~fle~saktg~nvedafle~akkiyqniq 177 (215)
T KOG0097|consen 132 ------------RDVTYEEAKEFAEENG-LMFLEASAKTGQNVEDAFLETAKKIYQNIQ 177 (215)
T ss_pred ------------ccCcHHHHHHHHhhcC-eEEEEecccccCcHHHHHHHHHHHHHHhhh
Confidence 7799999999999999 589999999999999999999999976543
No 67
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=6.5e-28 Score=201.39 Aligned_cols=156 Identities=25% Similarity=0.356 Sum_probs=133.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...|.||+++.+.+.+.+++..+.+.||||+|++.+..++..++..+
T Consensus 10 gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~a----------------- 72 (247)
T cd04143 10 KVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTG----------------- 72 (247)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccC-----------------
Confidence 799999999999999998999999887788889999999999999999998887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh----------CCCCCEEEEE
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH----------CPSTPIILVG 150 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~----------~~~~piilv~ 150 (228)
|++|+|||+++++||+.+. .|+..+... ..+.|++||+
T Consensus 73 -------------------------------d~iIlVfdv~~~~Sf~~i~-~~~~~I~~~k~~~~~~~~~~~~~piIivg 120 (247)
T cd04143 73 -------------------------------DVFILVFSLDNRESFEEVC-RLREQILETKSCLKNKTKENVKIPMVICG 120 (247)
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhhcccccccccCCCCcEEEEE
Confidence 9999999999999999997 888887653 2468999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
||+|+... +.+..+++..++.......++++||++|.||+++|++++.....+..
T Consensus 121 NK~Dl~~~------------~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p~e 175 (247)
T cd04143 121 NKADRDFP------------REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPNE 175 (247)
T ss_pred ECccchhc------------cccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhccccc
Confidence 99999764 44777788777765422589999999999999999999997755444
No 68
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=7.3e-28 Score=189.27 Aligned_cols=149 Identities=30% Similarity=0.541 Sum_probs=132.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 15 ~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~---------------- 78 (170)
T cd04116 15 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGS---------------- 78 (170)
T ss_pred CCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCC----------------
Confidence 7999999999999999888888886554 46778899999999999999999998888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~D 154 (228)
|++++|||+++++||+.+. .|+..+.... .+.|++||+||+|
T Consensus 79 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (170)
T cd04116 79 --------------------------------DCCLLTFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKND 125 (170)
T ss_pred --------------------------------CEEEEEEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECcc
Confidence 9999999999999999997 8888776543 3589999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.. +.++.+++..+++.+++.+++++||++|.|++++|.++++.
T Consensus 126 l~~-------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 126 IPE-------------RQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccc-------------cccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 974 45788889999999987789999999999999999999875
No 69
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=1.1e-27 Score=187.29 Aligned_cols=151 Identities=26% Similarity=0.483 Sum_probs=129.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeee-ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.+.++.+. .+.....+++..+.+.+||++|++.+..+++.+++.+
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 73 (161)
T cd04124 10 AVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKA---------------- 73 (161)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCC----------------
Confidence 79999999999999998888887753 3455677788899999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++.+|..+. .|+..+.+..++.|+++|+||+|+...
T Consensus 74 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~- 119 (161)
T cd04124 74 --------------------------------HACILVFDVTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS- 119 (161)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh-
Confidence 9999999999999999997 999999887778999999999998532
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
. .++...+++.++ .+++++||++|.|++++|+.+++.++.++
T Consensus 120 -------------~-~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 161 (161)
T cd04124 120 -------------V-TQKKFNFAEKHN-LPLYYVSAADGTNVVKLFQDAIKLAVSYK 161 (161)
T ss_pred -------------H-HHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 1 234556677777 48999999999999999999999887653
No 70
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=6.2e-28 Score=187.79 Aligned_cols=149 Identities=27% Similarity=0.507 Sum_probs=132.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEc--CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD--GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|+++.|.+.+.+|++..+ ...+.++ +..+.+.+||++|++.+..++..+++++
T Consensus 10 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-------------- 75 (162)
T cd04106 10 NVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGA-------------- 75 (162)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCC--------------
Confidence 7999999999999999989999997665 4556666 7789999999999999988888888888
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++++|..+. .|+..+.....+.|+++|+||+|+..
T Consensus 76 ----------------------------------~~~v~v~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 76 ----------------------------------QACILVFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred ----------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhccc
Confidence 9999999999999999998 99999887777899999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. +.++.+++..+++.+++ +++++||++|.|++++|+++...
T Consensus 121 ~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 121 Q------------AVITNEEAEALAKRLQL-PLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred c------------cCCCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHh
Confidence 4 45777889999999995 89999999999999999998753
No 71
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=1.9e-27 Score=192.47 Aligned_cols=165 Identities=22% Similarity=0.379 Sum_probs=126.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.||++.. +...+.+++..+.+.+|||+|...+.......+ +.....
T Consensus 10 ~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~------~~~~~~------- 76 (198)
T cd04142 10 GVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEW------MDPRFR------- 76 (198)
T ss_pred CCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHH------HHHHHh-------
Confidence 799999999999999998899998644 445677889989999999999865432111000 000000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDL 155 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl 155 (228)
....+|++++|||+++++||+.+. .|+..+.+.. +++|++|||||+|+
T Consensus 77 ---------------------------~~~~ad~iilv~D~~~~~S~~~~~-~~~~~i~~~~~~~~~~~piiivgNK~Dl 128 (198)
T cd04142 77 ---------------------------GLRNSRAFILVYDICSPDSFHYVK-LLRQQILETRPAGNKEPPIVVVGNKRDQ 128 (198)
T ss_pred ---------------------------hhccCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcccCCCCCCEEEEEECccc
Confidence 011239999999999999999998 8888877653 57999999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHH-HhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCC
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAK-EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTV 219 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~ 219 (228)
... +.++.+++..++. .++ .+|+++||++|.||+++|+.++..++.+.+..
T Consensus 129 ~~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~ 180 (198)
T cd04142 129 QRH------------RFAPRHVLSVLVRKSWK-CGYLECSAKYNWHILLLFKELLISATTRGRST 180 (198)
T ss_pred ccc------------ccccHHHHHHHHHHhcC-CcEEEecCCCCCCHHHHHHHHHHHhhccCCCc
Confidence 764 4466667777754 457 48999999999999999999999999877653
No 72
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.2e-27 Score=187.22 Aligned_cols=150 Identities=25% Similarity=0.485 Sum_probs=131.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++|..+.|...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 13 ~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~---------------- 76 (165)
T cd01864 13 NVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSA---------------- 76 (165)
T ss_pred CCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccC----------------
Confidence 7999999999999999888888886544 45677888888999999999998888777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 77 --------------------------------d~~llv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 77 --------------------------------NGAIIAYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred --------------------------------CEEEEEEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 9999988764 57899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.+..+++..+++.+++..++|+||++|.|++++|+++.+.
T Consensus 124 ------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 124 ------------REVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred ------------cccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 45777888999999987789999999999999999999875
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=1.3e-27 Score=186.12 Aligned_cols=150 Identities=30% Similarity=0.531 Sum_probs=132.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+...+.+|+++.+.....+++..+.+.+||++|++.+..++..+++++
T Consensus 12 ~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 74 (164)
T cd04145 12 GVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTG----------------- 74 (164)
T ss_pred CCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhC-----------------
Confidence 799999999999999988889998877777778899889999999999999888888777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.+.. .+.|++||+||+|+...
T Consensus 75 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 75 -------------------------------EGFLLVFSVTDRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 9999999999999999998 8888877642 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++.+++..+++.+++ +++++||++|.|++++|++++..+
T Consensus 123 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 123 ------------RKVSREEGQELARKLKI-PYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ------------ceecHHHHHHHHHHcCC-cEEEeeCCCCCCHHHHHHHHHHhh
Confidence 44677778889988884 899999999999999999998764
No 74
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=2.4e-27 Score=186.31 Aligned_cols=152 Identities=30% Similarity=0.552 Sum_probs=136.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.|...+.+|+++.+.+.+.+++..+.+++||++|++.+..++..++..+
T Consensus 11 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (168)
T cd04177 11 GVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSG----------------- 73 (168)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhC-----------------
Confidence 799999999999999988899999887877788899889999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++++|+.+. .|...+.+.. .+.|+++++||+|+...
T Consensus 74 -------------------------------~~~vlv~~~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 74 -------------------------------QGFLLVYSVTSEASLNELG-ELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 9999999999999999998 8888887643 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++..+++++||++|.|++++|.+++.+++
T Consensus 122 ------------~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 122 ------------RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred ------------CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 4577778888888888668999999999999999999998876
No 75
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=1.6e-27 Score=186.63 Aligned_cols=151 Identities=32% Similarity=0.531 Sum_probs=128.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCccc-ccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY-DRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.|.+.+.++....+...+.+++..+.+++||++|+..+ ......+++.+
T Consensus 9 ~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~---------------- 72 (165)
T cd04146 9 GVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWA---------------- 72 (165)
T ss_pred CCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhC----------------
Confidence 7999999999999999888999987777777888999999999999999852 23333344455
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~ 156 (228)
|++++|||+++++||+.+. .|+..+.... .+.|+++||||+|+.
T Consensus 73 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 73 --------------------------------DGFVLVYSITDRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 9999999999999999998 8888888754 379999999999986
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCC-CCHHHHHHHHHHHhc
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQ-KGLKTVFDEAIRAVL 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~-~~v~~lf~~l~~~i~ 213 (228)
.. +.++.+++..+++.++ .+|+++||++| .||+++|.++++.+.
T Consensus 120 ~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 120 HY------------RQVSTEEGEKLASELG-CLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred Hh------------CccCHHHHHHHHHHcC-CEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 54 4578888999999999 58999999999 599999999998664
No 76
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.95 E-value=2.5e-27 Score=185.26 Aligned_cols=150 Identities=30% Similarity=0.545 Sum_probs=132.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.+...+.||++..+ ...+.+++..+.+.+||++|++.+..+++.+++.+
T Consensus 13 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~---------------- 76 (165)
T cd01868 13 GVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGA---------------- 76 (165)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCC----------------
Confidence 7999999999999999888889987555 56778888889999999999998888888778777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++.+|..+. +|+..+.+... +.|++||+||+|+...
T Consensus 77 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 77 --------------------------------VGALLVYDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 99999887764 5899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.+..++...+++.++ .+++++||++|.|++++|++++..+
T Consensus 124 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 124 ------------RAVPTEEAKAFAEKNG-LSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ------------ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577888899999888 4899999999999999999998875
No 77
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=2.3e-27 Score=187.15 Aligned_cols=153 Identities=22% Similarity=0.280 Sum_probs=130.2
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|. ..|.||++..+. ..+.+++..+.+.+||++|++.+..++..++.++
T Consensus 14 ~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~--------------- 78 (169)
T cd01892 14 GSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAAC--------------- 78 (169)
T ss_pred CCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcC---------------
Confidence 79999999999999998 899999987765 5678889889999999999999988888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|+.+. .|+..+... .++|+++|+||+|+...
T Consensus 79 ---------------------------------d~~llv~d~~~~~s~~~~~-~~~~~~~~~-~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 79 ---------------------------------DVACLVYDSSDPKSFSYCA-EVYKKYFML-GEIPCLFVAAKADLDEQ 123 (169)
T ss_pred ---------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHhccC-CCCeEEEEEEccccccc
Confidence 9999999999999999987 888765432 36999999999999754
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+...+...+++.+++..++++||++|.|++++|+.+.+.+..+
T Consensus 124 ------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~~ 168 (169)
T cd01892 124 ------------QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQYP 168 (169)
T ss_pred ------------ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhCC
Confidence 223344566788888865679999999999999999999988753
No 78
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.5e-27 Score=193.58 Aligned_cols=153 Identities=33% Similarity=0.528 Sum_probs=133.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEE-cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|...+.+|++..+ .+.+.+ ++..+.+.+||++|++.+..++..+++++
T Consensus 12 ~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~--------------- 76 (211)
T cd04111 12 TVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNS--------------- 76 (211)
T ss_pred CCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCC---------------
Confidence 7999999999999999888889986444 556666 56788999999999999988888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||+++++||+.+. +|+..+.... ...|++|||||+|+.
T Consensus 77 ---------------------------------d~iilv~D~~~~~Sf~~l~-~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 77 ---------------------------------VGVLLVFDITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred ---------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 9999999999999999998 8999887654 257889999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.. +.++.+++..+++.++ .+++++||++|.||+++|+++.+.+.+.
T Consensus 123 ~~------------~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 123 SQ------------RQVTREEAEKLAKDLG-MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred cc------------cccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 64 5588888999999999 5899999999999999999999987654
No 79
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=4.5e-27 Score=184.90 Aligned_cols=152 Identities=28% Similarity=0.557 Sum_probs=133.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 14 ~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 77 (168)
T cd01866 14 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGA---------------- 77 (168)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccC----------------
Confidence 7999999999999999888888876555 45677888889999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.||..+. .|+..+..+. ++.|++||+||.|+...
T Consensus 78 --------------------------------d~il~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 78 --------------------------------AGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR 124 (168)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 9999998765 67999999999999854
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..++..++ .+++|+||+++.|++++|.++++.+++
T Consensus 125 ------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 125 ------------REVSYEEGEAFAKEHG-LIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred ------------cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4578888889999988 589999999999999999999998764
No 80
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.95 E-value=8.9e-27 Score=187.05 Aligned_cols=156 Identities=27% Similarity=0.507 Sum_probs=134.6
Q ss_pred CCChhhhHHhhhhCCCCC-CCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|.. .|.+|++..+ ...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 10 ~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~--------------- 74 (193)
T cd04118 10 SVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGA--------------- 74 (193)
T ss_pred CCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCC---------------
Confidence 799999999999999974 7889997766 45688899999999999999999988888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|+.+. .|+..+....++.|+++|+||+|+...
T Consensus 75 ---------------------------------d~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 75 ---------------------------------KAAIVCYDLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEccccccc
Confidence 9999999999999999987 899998877668999999999998643
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. ..+.+..+++..++..++ .+++++||++|.|++++|+++.+.+.+
T Consensus 121 ~~--------~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 121 DR--------SLRQVDFHDVQDFADEIK-AQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred cc--------ccCccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 10 014566677888888888 489999999999999999999998865
No 81
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=4.8e-27 Score=182.90 Aligned_cols=150 Identities=32% Similarity=0.564 Sum_probs=132.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~---------------- 73 (161)
T cd04113 10 GTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGA---------------- 73 (161)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCC----------------
Confidence 7999999999999999888888886555 45677888889999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... ++.|++||+||+|+...
T Consensus 74 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 74 --------------------------------AGALLVYDITNRTSFEALP-TWLSDARALASPNIVVILVGNKSDLADQ 120 (161)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence 9999999999999999998 8988887654 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++.+++..+++.++ .+++++||+++.|++++|.++++.+
T Consensus 121 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 121 ------------REVTFLEASRFAQENG-LLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred ------------ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578888999999999 6899999999999999999998764
No 82
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=1.3e-26 Score=181.76 Aligned_cols=161 Identities=73% Similarity=1.239 Sum_probs=137.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.++..+.+......++..+.+.+||++|++.+..++...++.+
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~----------------- 72 (171)
T cd00157 10 AVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNT----------------- 72 (171)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCC-----------------
Confidence 799999999999999988889999888887888889999999999999998877777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|....+.|+..+..+..+.|+++|+||+|+.....
T Consensus 73 -------------------------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 73 -------------------------------DVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 9999999999999999988789988888877899999999999987643
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
..... ......+..+++..++..+++.+|+++||++|.|++++|+++++
T Consensus 122 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 122 TLKKL-EKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhc-ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 21111 11113467788899999999779999999999999999999875
No 83
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=3.9e-27 Score=193.04 Aligned_cols=152 Identities=28% Similarity=0.515 Sum_probs=135.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.+|++..+ .+.+.+++..+.+.+||++|++.+..++..+++++
T Consensus 22 ~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~---------------- 85 (216)
T PLN03110 22 GVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA---------------- 85 (216)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCC----------------
Confidence 7999999999999999888899997655 57788899999999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++++|+.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 86 --------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 86 --------------------------------VGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred --------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 9999999999999999998 8999888775 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..++..++ .+++++||++|.|++++|++++..+.+
T Consensus 133 ------------~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 133 ------------RSVAEEDGQALAEKEG-LSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred ------------cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5577888899998888 599999999999999999999988754
No 84
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.95 E-value=9.7e-27 Score=183.30 Aligned_cols=150 Identities=29% Similarity=0.505 Sum_probs=131.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccc-cCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYD-RLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+.+.|...+.++++..+ ...+.+++..+.+.+||++|++.++ .++..+++++
T Consensus 12 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~--------------- 76 (170)
T cd04115 12 NVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNV--------------- 76 (170)
T ss_pred CCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCC---------------
Confidence 7999999999999999888899986554 4667889999999999999998876 4667677777
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||++++++|..+. .|+..+.... .++|+++|+||+|+.
T Consensus 77 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 77 ---------------------------------HAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccch
Confidence 9999999999999999998 9998888764 469999999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccC---CCCHHHHHHHHHHHh
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALT---QKGLKTVFDEAIRAV 212 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~---~~~v~~lf~~l~~~i 212 (228)
.. +.++.+++..+++.++ .+|+|+||++ +.|++++|.++++.+
T Consensus 123 ~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 123 EQ------------IQVPTDLAQRFADAHS-MPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred hh------------cCCCHHHHHHHHHHcC-CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 65 5577888899999888 5899999999 999999999999876
No 85
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=9.9e-27 Score=189.85 Aligned_cols=154 Identities=27% Similarity=0.526 Sum_probs=135.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.|...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 16 gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~a---------------- 79 (210)
T PLN03108 16 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGA---------------- 79 (210)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC----------------
Confidence 7999999999999999888888886555 45678889889999999999999888888778777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... ...|+++|+||+|+.+.
T Consensus 80 --------------------------------d~~vlv~D~~~~~s~~~l~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 80 --------------------------------AGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred --------------------------------CEEEEEEECCcHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 9999999999999999997 8988877654 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.++.+++..+++.+++ +++++||+++.||+++|.++++.+++..
T Consensus 127 ------------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 127 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred ------------cCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 56888899999999995 8999999999999999999999887643
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=1.8e-26 Score=180.05 Aligned_cols=151 Identities=34% Similarity=0.539 Sum_probs=127.4
Q ss_pred CCChhhhHHhhhhC--CCCCCCCceeeecc-ceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhh
Q psy8274 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNY-SANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKY 76 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (228)
|||||||++++..+ .|.+.+.+|++..+ ...+.++ +..+.+.+||++|++.+..++..++.++
T Consensus 10 ~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~------------- 76 (164)
T cd04101 10 AVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESP------------- 76 (164)
T ss_pred CCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCC-------------
Confidence 79999999999965 68889999996554 4455564 6779999999999988877777777776
Q ss_pred hhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 77 LECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++++|||++++++|..+. .|+..+.....+.|+++|+||+|+.
T Consensus 77 -----------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 77 -----------------------------------SVFILVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred -----------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999999999999999987 9999988877779999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. ..++..++..+...+++ +++++||++|.|++++|+.+.+.++
T Consensus 121 ~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (164)
T cd04101 121 DK------------AEVTDAQAQAFAQANQL-KFFKTSALRGVGYEEPFESLARAFH 164 (164)
T ss_pred cc------------cCCCHHHHHHHHHHcCC-eEEEEeCCCCCChHHHHHHHHHHhC
Confidence 64 34666667777777784 7999999999999999999998753
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.94 E-value=2.3e-26 Score=189.18 Aligned_cols=150 Identities=27% Similarity=0.395 Sum_probs=127.1
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccc-cccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP-QTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|+.+.|. ..+.++.+ +.+...+.+++..+.+.+||++|++. .+...++. ++
T Consensus 10 gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~a-------------- 73 (221)
T cd04148 10 GVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQG-------------- 73 (221)
T ss_pred CCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCC--------------
Confidence 79999999999998886 77888876 56677888899999999999999982 22333333 55
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDL 155 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl 155 (228)
|++++|||++|+.||..+. .|+..+.... .+.|+++|+||+|+
T Consensus 74 ----------------------------------d~iilV~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl 118 (221)
T cd04148 74 ----------------------------------DAFVVVYSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDL 118 (221)
T ss_pred ----------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhc
Confidence 9999999999999999998 8988887764 47999999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
... +.++.+++..++..+++ +|+++||++|.||+++|++++..+..
T Consensus 119 ~~~------------~~v~~~~~~~~a~~~~~-~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 119 ARS------------REVSVQEGRACAVVFDC-KFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred ccc------------ceecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 764 45777888889988885 89999999999999999999998864
No 88
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=4.9e-26 Score=180.57 Aligned_cols=166 Identities=27% Similarity=0.466 Sum_probs=138.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+...+.||....+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 11 g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~----------------- 73 (180)
T cd04137 11 SVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGI----------------- 73 (180)
T ss_pred CCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhC-----------------
Confidence 799999999999999988889988777777778888888999999999998877777666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++..+|+.+. .|+..+.+.. .+.|+++|+||+|+...
T Consensus 74 -------------------------------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 74 -------------------------------HGYILVYSVTSRKSFEVVK-VIYDKILDMLGKESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEchhhhhc
Confidence 9999999999999999998 7766666543 36899999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCC--CCCcccC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPK--KKRCVLL 228 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~--~~~~~~~ 228 (228)
+.+..++...+++.++ .+++++||+++.|++++|.++.+.+.......+. +++|.+|
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (180)
T cd04137 122 ------------RQVSTEEGKELAESWG-AAFLESSARENENVEEAFELLIEEIEKVENPLDPGQKKKCSIM 180 (180)
T ss_pred ------------CccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCceeC
Confidence 3466667778888888 5899999999999999999999988765544333 4579875
No 89
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=7.6e-26 Score=176.05 Aligned_cols=152 Identities=33% Similarity=0.590 Sum_probs=132.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.+..+...+.++++..+ ...+.+++..+.+.+||++|+..+..++..++..+
T Consensus 10 ~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~---------------- 73 (164)
T smart00175 10 GVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGA---------------- 73 (164)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCC----------------
Confidence 7999999999999999888888886655 45678888889999999999988887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+++.+. .|+..+..+. +++|+++|+||+|+...
T Consensus 74 --------------------------------d~~ilv~d~~~~~s~~~~~-~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 74 --------------------------------VGALLVYDITNRESFENLK-NWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 9999999999999999998 8999888776 67999999999998764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.|++++|+++++.+..
T Consensus 121 ------------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 121 ------------RQVSREEAEAFAEEHGL-PFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred ------------cCCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 44677788889998895 89999999999999999999998754
No 90
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=8.4e-26 Score=175.94 Aligned_cols=150 Identities=28% Similarity=0.551 Sum_probs=132.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~---------------- 74 (163)
T cd01860 11 SVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGA---------------- 74 (163)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccC----------------
Confidence 7999999999999999887888887655 56778899999999999999988887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... ...|+++++||+|+...
T Consensus 75 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 75 --------------------------------AAAIVVYDITSEESFEKAK-SWVKELQRNASPNIIIALVGNKADLESK 121 (163)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 9998887765 57899999999998853
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++++.+
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 122 ------------RQVSTEEAQEYADENG-LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred ------------CcCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4477788889999999 5899999999999999999999876
No 91
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=8.3e-26 Score=175.61 Aligned_cols=149 Identities=32% Similarity=0.558 Sum_probs=129.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~---------------- 73 (161)
T cd01861 10 SVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDS---------------- 73 (161)
T ss_pred CCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccC----------------
Confidence 7999999999999999888888886544 56677888888999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+..... +.|+++|+||+|+.+.
T Consensus 74 --------------------------------~~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~ 120 (161)
T cd01861 74 --------------------------------SVAVVVYDITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSDK 120 (161)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhcccc
Confidence 9999999999999999998 89998876653 6999999999999643
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.+..++...+++..+ .+++++||+++.|++++|.++.+.
T Consensus 121 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 121 ------------RQVSTEEGEKKAKELN-AMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ------------CccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHHHHHHHHh
Confidence 4577778888888888 589999999999999999999875
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=1.3e-25 Score=176.17 Aligned_cols=154 Identities=29% Similarity=0.545 Sum_probs=131.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++.++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 10 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~---------------- 73 (172)
T cd01862 10 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGA---------------- 73 (172)
T ss_pred CCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCC----------------
Confidence 7999999999999999888888886544 45678888889999999999998888888778777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-----CCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-----STPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-----~~piilv~nK~D 154 (228)
|++++|||++++++|..+. .|...+..... ++|+++|+||+|
T Consensus 74 --------------------------------d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D 120 (172)
T cd01862 74 --------------------------------DCCVLVYDVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKID 120 (172)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECcc
Confidence 9999999999999999987 78777655432 689999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+..+ +.++.++...+++..+..+++++||++|.|++++|+++.+.+++.
T Consensus 121 l~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 121 LEEK------------RQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred cccc------------cccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9853 346677788888888856899999999999999999999988765
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=2e-25 Score=173.55 Aligned_cols=151 Identities=30% Similarity=0.554 Sum_probs=131.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++++.+.|...+.+++.+.+.+...+++..+.+.+||++|+..+...+..+++.+
T Consensus 10 ~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----------------- 72 (164)
T cd04139 10 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSG----------------- 72 (164)
T ss_pred CCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcC-----------------
Confidence 799999999999999988999999888888888899999999999999998887777777776
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 73 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 73 -------------------------------EGFLLVFSITDMESFTATA-EFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 9999999999999999998 7877777653 47999999999999763
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.....+...++..++ .+++++||++|.|++++|.++.+.+.
T Consensus 121 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 121 ------------RQVSSEEAANLARQWG-VPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred ------------cccCHHHHHHHHHHhC-CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 2356667778888888 48999999999999999999998775
No 94
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=3.3e-25 Score=172.37 Aligned_cols=148 Identities=28% Similarity=0.555 Sum_probs=128.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~---------------- 73 (161)
T cd01863 10 GVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGA---------------- 73 (161)
T ss_pred CCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCC----------------
Confidence 79999999999999998778888876554 4567788889999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.+|..+. .|+..+..+. .+.|+++|+||+|+..
T Consensus 74 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 74 --------------------------------QGVILVYDVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred --------------------------------CEEEEEEECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 9999999999999999998 7999888764 4689999999999984
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.+..++...+++..++ +++++||++|.|++++|+++++.
T Consensus 121 -------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 121 -------------REVTREEGLKFARKHNM-LFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred -------------cccCHHHHHHHHHHcCC-EEEEEecCCCCCHHHHHHHHHHh
Confidence 34667788899998884 89999999999999999999875
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=3.5e-25 Score=171.60 Aligned_cols=151 Identities=32% Similarity=0.594 Sum_probs=128.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++....+ ...+.+.+..+.+.+||++|++.+..+++.++.++
T Consensus 10 ~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~---------------- 73 (162)
T cd04123 10 RVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDA---------------- 73 (162)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccC----------------
Confidence 7999999999999999877777774444 45667778888999999999988888887777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++++..+. .|+..+..... +.|+++|+||+|+...
T Consensus 74 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 74 --------------------------------DGAILVYDITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQ 120 (162)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 89888887654 6899999999999854
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..++...+++.+++ +++++||+++.|++++|+++.+.++
T Consensus 121 ------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gi~~~~~~l~~~~~ 162 (162)
T cd04123 121 ------------RVVSKSEAEEYAKSVGA-KHFETSAKTGKGIEELFLSLAKRMI 162 (162)
T ss_pred ------------cCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 44666777888888884 7999999999999999999988753
No 96
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.93 E-value=4e-26 Score=179.18 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=119.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+...+.||++..+ ..+++..+.+.+||++|++.+..+++.+++++
T Consensus 9 ~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 68 (164)
T cd04162 9 GAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGS----------------- 68 (164)
T ss_pred CCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhC-----------------
Confidence 7999999999999989888899986432 34566678999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+. .|+..+.+..+++|+++|+||+|+.....
T Consensus 69 -------------------------------d~ii~V~D~t~~~s~~~~~-~~l~~~~~~~~~~piilv~NK~Dl~~~~~ 116 (164)
T cd04162 69 -------------------------------QGLIFVVDSADSERLPLAR-QELHQLLQHPPDLPLVVLANKQDLPAARS 116 (164)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhCCCCCcEEEEEeCcCCcCCCC
Confidence 9999999999999999987 77777765556899999999999976532
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccC------CCCHHHHHHHHHH
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALT------QKGLKTVFDEAIR 210 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~------~~~v~~lf~~l~~ 210 (228)
..+. ....++..++++.+ ..++++||++ ++||+++|+.++.
T Consensus 117 ~~~i--------~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 117 VQEI--------HKELELEPIARGRR-WILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred HHHH--------HHHhCChhhcCCCc-eEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 1111 01123455666667 5789999888 9999999998864
No 97
>PLN03118 Rab family protein; Provisional
Probab=99.93 E-value=6.1e-25 Score=179.20 Aligned_cols=153 Identities=29% Similarity=0.544 Sum_probs=129.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+. .+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 24 ~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~---------------- 86 (211)
T PLN03118 24 GVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA---------------- 86 (211)
T ss_pred CCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC----------------
Confidence 79999999999998874 6777876555 35667788889999999999999988888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++++|..+.+.|...+..+. .+.|++||+||+|+..
T Consensus 87 --------------------------------d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 87 --------------------------------QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999999999755777776543 3579999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. +.++.+++..++..+++ .|+++||+++.|++++|.++...+...
T Consensus 135 ~------------~~i~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 135 E------------RDVSREEGMALAKEHGC-LFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred c------------CccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 4 45777888888888884 899999999999999999999888653
No 98
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=5.1e-25 Score=172.85 Aligned_cols=155 Identities=28% Similarity=0.405 Sum_probs=118.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|.+.+.++ ...+.....+++..+.+.+||++|++.+...+..++..+
T Consensus 10 ~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a----------------- 71 (166)
T cd01893 10 GVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKA----------------- 71 (166)
T ss_pred CCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccC-----------------
Confidence 79999999999999997665443 333444456677889999999999987665555555666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|+.+.+.|+..+....++.|+++|+||+|+.+...
T Consensus 72 -------------------------------d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 72 -------------------------------NVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 9999999999999999986578888887767899999999999976432
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ....++...++..+. +.+++++||++|.|++++|..+.+.++.
T Consensus 121 ~----------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 121 Q----------AGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred h----------hHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 0 001222333333332 2479999999999999999999998875
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=4.6e-25 Score=170.61 Aligned_cols=150 Identities=33% Similarity=0.600 Sum_probs=130.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++++.+.+...+.++..+.+...+.+++..+.+.+||++|+..+..++..++..+
T Consensus 9 ~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~----------------- 71 (160)
T cd00876 9 GVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQG----------------- 71 (160)
T ss_pred CCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcC-----------------
Confidence 799999999999998988999998877777788888889999999999988776666666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++++..+. .|...+..... ..|+++|+||+|+...
T Consensus 72 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 72 -------------------------------DGFILVYSITDRESFEEIK-GYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 9999999999999999998 77777776654 7999999999999874
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++.+++..+++.++ .+++++||+++.|++++|++++..+
T Consensus 120 ------------~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 120 ------------RQVSKEEGKALAKEWG-CPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred ------------ceecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHhhC
Confidence 4477788889999888 5899999999999999999998754
No 100
>PTZ00099 rab6; Provisional
Probab=99.93 E-value=1.6e-24 Score=172.24 Aligned_cols=140 Identities=30% Similarity=0.506 Sum_probs=123.7
Q ss_pred hCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHH
Q psy8274 13 TNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVF 91 (228)
Q Consensus 13 ~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 91 (228)
.+.|.+.|.||++..+ .+.+.+++..+.+.||||+|++.+..+++.+++++
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~a---------------------------- 53 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDS---------------------------- 53 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCC----------------------------
Confidence 3568889999997555 56788899999999999999999999999999998
Q ss_pred HHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCchHHHHHHhhccC
Q psy8274 92 DEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKL 170 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 170 (228)
|++|+|||+++++||+.+. .|+..+.... ...|++|||||+||.+.
T Consensus 54 --------------------d~~ilv~D~t~~~sf~~~~-~w~~~i~~~~~~~~piilVgNK~DL~~~------------ 100 (176)
T PTZ00099 54 --------------------AAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDL------------ 100 (176)
T ss_pred --------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------
Confidence 9999999999999999997 8998887654 57899999999999754
Q ss_pred ccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 171 APITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ .|+|+||++|.||+++|++++..+..
T Consensus 101 ~~v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 101 RKVTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cCCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45788889999998885 79999999999999999999998854
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.8e-24 Score=174.79 Aligned_cols=153 Identities=27% Similarity=0.440 Sum_probs=127.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+...+.+|+.+.+...+.+.+..+.+.+||++|+..+..++..++.++
T Consensus 9 ~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a----------------- 71 (198)
T cd04147 9 GVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNS----------------- 71 (198)
T ss_pred CCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcC-----------------
Confidence 799999999999999988888888766667788888889999999999998888777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|+.+. .|+..+.... .+.|++||+||+|+...
T Consensus 72 -------------------------------d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 72 -------------------------------DAFALVYAVDDPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence 9999999999999999997 8888777654 36999999999999653
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH-HhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK-EIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. +.+...+...... .++ .+++++||++|.|++++|+++++.+..
T Consensus 120 ~-----------~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 120 E-----------RQVPAKDALSTVELDWN-CGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred c-----------ccccHHHHHHHHHhhcC-CcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 1 3344444444443 345 589999999999999999999998764
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.92 E-value=6.4e-25 Score=172.93 Aligned_cols=148 Identities=17% Similarity=0.237 Sum_probs=116.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+. .+.||++..+. . ++...+.+.+||++|+..+...+..++..+
T Consensus 9 ~~GKTsl~~~l~~~~~~-~~~~T~~~~~~-~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~a----------------- 67 (169)
T cd04158 9 GAGKTTILFKLKQDEFM-QPIPTIGFNVE-T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNT----------------- 67 (169)
T ss_pred CCCHHHHHHHHhcCCCC-CcCCcCceeEE-E--EEECCEEEEEEECCCChhcchHHHHHhccC-----------------
Confidence 79999999999998776 47788765443 2 333457899999999998888888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 68 -------------------------------d~ii~V~D~s~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 68 -------------------------------QAVVFVVDSSHRDRVSEAH-SELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred -------------------------------CEEEEEEeCCcHHHHHHHH-HHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 9999999999999999997 7777665432 45899999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhC-----CceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIG-----AVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
++.+++..+++..+ ...++++||++|.||+++|+++.+.+...
T Consensus 116 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 116 --------------LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred --------------CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 45555655554322 13688999999999999999999877653
No 103
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.92 E-value=3.7e-25 Score=174.39 Aligned_cols=143 Identities=19% Similarity=0.174 Sum_probs=110.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+. .+.||++..+. .+ +...+.+.+||++|++.+..+++.++.++
T Consensus 19 ~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a----------------- 77 (168)
T cd04149 19 AAGKTTILYKLKLGQSV-TTIPTVGFNVE-TV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGT----------------- 77 (168)
T ss_pred CCCHHHHHHHHccCCCc-cccCCcccceE-EE--EECCEEEEEEECCCCHHHHHHHHHHhccC-----------------
Confidence 79999999999988875 46788765443 22 23458899999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHh-hh-CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVR-HH-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~-~~-~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+. .. ..++|++||+||+|+.+.
T Consensus 78 -------------------------------~~ii~v~D~t~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 125 (168)
T cd04149 78 -------------------------------QGLIFVVDSADRDRIDEAR-QELHRIINDREMRDALLLVFANKQDLPDA 125 (168)
T ss_pred -------------------------------CEEEEEEeCCchhhHHHHH-HHHHHHhcCHhhcCCcEEEEEECcCCccC
Confidence 9999999999999999987 5554443 33 257899999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHH---h-CCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKE---I-GAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
++.+++..+++. . ...+++++||++|.||+++|.++.+
T Consensus 126 --------------~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 126 --------------MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred --------------CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 344445444321 1 1136899999999999999999864
No 104
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=4.8e-25 Score=175.93 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=112.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|. .+.||++..+. . ++...+.+.+||++|++.++.++..+++++
T Consensus 27 ~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a----------------- 85 (181)
T PLN00223 27 AAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNT----------------- 85 (181)
T ss_pred CCCHHHHHHHHccCCCc-cccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccC-----------------
Confidence 79999999999988886 56788865443 2 334458899999999999999999999988
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh-h-CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH-H-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~-~-~~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++++|..+. .++..+.. . .++.|++||+||+|+.+.
T Consensus 86 -------------------------------~~iI~V~D~s~~~s~~~~~-~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 86 -------------------------------QGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred -------------------------------CEEEEEEeCCcHHHHHHHH-HHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 9999999999999999887 55555433 2 257999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCC-------ceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGA-------VKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
...++ +.+.+++ ..++++||++|+||+++|+++...+.+
T Consensus 134 --------------~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 134 --------------MNAAE---ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred --------------CCHHH---HHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 22232 3333332 246689999999999999999988764
No 105
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=3.2e-24 Score=168.08 Aligned_cols=151 Identities=26% Similarity=0.473 Sum_probs=127.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++..+.+...+.+|++.. ....+.+++..+.+.+||++|+..+...+..++..+
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~---------------- 80 (169)
T cd04114 17 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA---------------- 80 (169)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC----------------
Confidence 799999999999888887778887543 345678889889999999999988877777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+..... +.|+++|+||+|+.+.
T Consensus 81 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 81 --------------------------------NALILTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 89988877653 6899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+....+.+... .+++++||++|.|++++|+++.+.++
T Consensus 128 ------------~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~~ 169 (169)
T cd04114 128 ------------REVSQQRAEEFSDAQD-MYYLETSAKESDNVEKLFLDLACRLI 169 (169)
T ss_pred ------------cccCHHHHHHHHHHcC-CeEEEeeCCCCCCHHHHHHHHHHHhC
Confidence 3466666777777777 58999999999999999999998653
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.92 E-value=1.2e-24 Score=169.84 Aligned_cols=142 Identities=18% Similarity=0.196 Sum_probs=107.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++..+.|. .+.||++..+. .+. ...+.+.+||++|++.+..++..+++++
T Consensus 10 ~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~a----------------- 68 (159)
T cd04150 10 AAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNT----------------- 68 (159)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCC-----------------
Confidence 79999999999988887 57888765442 233 3458899999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHh-hhC-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVR-HHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~-~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+. ... .+.|++|++||+|+.+.
T Consensus 69 -------------------------------d~~i~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 69 -------------------------------QGLIFVVDSNDRERIGEAR-EELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 9999999999999999998 5555443 322 46899999999999753
Q ss_pred hHHHHHHhhccCccccHHHH-HHHH----HHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQG-LSMA----KEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~-~~~~----~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
. ..++. ..+. +..+ ..++++||++|.||+++|+++.+
T Consensus 117 ~--------------~~~~i~~~~~~~~~~~~~-~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 117 M--------------SAAEVTDKLGLHSLRNRN-WYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred C--------------CHHHHHHHhCccccCCCC-EEEEEeeCCCCCCHHHHHHHHhc
Confidence 1 11111 1111 1123 35789999999999999999864
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.92 E-value=2.8e-24 Score=170.45 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=110.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|. .+.||++..+. .+.. ..+.+.+||++|++.+..++..+++++
T Consensus 23 ~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~a----------------- 81 (175)
T smart00177 23 AAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNT----------------- 81 (175)
T ss_pred CCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCC-----------------
Confidence 79999999999988885 57788865543 2333 457899999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh-h-CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH-H-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~-~-~~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++++|+.+. .|+..+.. . ..+.|++||+||+|+.+.
T Consensus 82 -------------------------------d~ii~v~D~t~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 82 -------------------------------QGLIFVVDSNDRDRIDEAR-EELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 9999999999999999988 55555543 2 246899999999999754
Q ss_pred hHHHHHHhhccCccccHHHHHHHH-----HHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMA-----KEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
. +.++..... +... ..++++||++|.||+++|+++...+.
T Consensus 130 ~--------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 130 M--------------KAAEITEKLGLHSIRDRN-WYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred C--------------CHHHHHHHhCccccCCCc-EEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 1 122221111 1112 35778999999999999999987753
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=1.3e-23 Score=171.85 Aligned_cols=151 Identities=27% Similarity=0.481 Sum_probs=128.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++++.+.|...|.+|++..+. ..+..++..+.+.+||++|++.+..++..++..+
T Consensus 19 g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~---------------- 82 (215)
T PTZ00132 19 GVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG---------------- 82 (215)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC----------------
Confidence 79999999999999999999999976554 4556688889999999999998888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++++|||++++.||..+. .|+..+....++.|+++++||+|+.+.
T Consensus 83 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~- 128 (215)
T PTZ00132 83 --------------------------------QCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDR- 128 (215)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCccc-
Confidence 9999999999999999998 999998877778999999999998652
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+..+ ...+++..+ ..++++||++|.|++++|.++++.++..
T Consensus 129 ------------~~~~~-~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 129 ------------QVKAR-QITFHRKKN-LQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred ------------cCCHH-HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 22222 345667777 5899999999999999999999988754
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=2.3e-24 Score=172.14 Aligned_cols=146 Identities=19% Similarity=0.240 Sum_probs=110.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++..+.|.. +.||++..+. . ++...+.+.+||++|++.+..++..+++++
T Consensus 27 ~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~a----------------- 85 (182)
T PTZ00133 27 AAGKTTILYKLKLGEVVT-TIPTIGFNVE-T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNT----------------- 85 (182)
T ss_pred CCCHHHHHHHHhcCCccc-cCCccccceE-E--EEECCEEEEEEECCCCHhHHHHHHHHhcCC-----------------
Confidence 799999999999888864 6788865543 2 333458899999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHH-hhh-CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEV-RHH-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l-~~~-~~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++++|..+. .++..+ ... ..++|++||+||.|+.+.
T Consensus 86 -------------------------------d~iI~v~D~t~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 86 -------------------------------NGLIFVVDSNDRERIGDAR-EELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 9999999999999999987 444444 332 246899999999998753
Q ss_pred hHHHHHHhhccCccccHHHHHHH-----HHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSM-----AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ..++.... ++... ..++++||++|.|++++|+++.+.+.+
T Consensus 134 ~--------------~~~~i~~~l~~~~~~~~~-~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 134 M--------------STTEVTEKLGLHSVRQRN-WYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred C--------------CHHHHHHHhCCCcccCCc-EEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 1 11111111 11112 357799999999999999999987764
No 110
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.91 E-value=1.7e-23 Score=160.76 Aligned_cols=147 Identities=34% Similarity=0.627 Sum_probs=126.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+||++|+..+..++..+++++
T Consensus 10 ~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~---------------- 73 (159)
T cd00154 10 GVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGA---------------- 73 (159)
T ss_pred CCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCC----------------
Confidence 7999999999999999888888886555 45677778889999999999987777666666666
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++++..+. .|+..+.... ...|+++++||+|+...
T Consensus 74 --------------------------------d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 120 (159)
T cd00154 74 --------------------------------HGAILVYDITNRESFENLD-KWLKELKEYAPENIPIILVGNKIDLEDQ 120 (159)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEccccccc
Confidence 9999999999999999998 8999888876 67999999999999733
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~ 209 (228)
.....++...++..++ .+++++||+++.|++++|.++.
T Consensus 121 ------------~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 121 ------------RQVSTEEAQQFAKENG-LLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ------------ccccHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHh
Confidence 3466778888888888 5899999999999999999986
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.91 E-value=8e-24 Score=168.97 Aligned_cols=153 Identities=20% Similarity=0.279 Sum_probs=116.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEE-cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++++..+.|... .||.+... ...+.+ ++..+.+.+|||+|++.+..++..+++.+
T Consensus 13 ~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~--------------- 76 (183)
T cd04152 13 SAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCT--------------- 76 (183)
T ss_pred CCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccC---------------
Confidence 7999999999999888754 67765333 333433 45678999999999998888888888877
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||++++.++..+. .|+..+.... .+.|++||+||+|+.
T Consensus 77 ---------------------------------d~ii~v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 77 ---------------------------------DGIVFVVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 9999999999999999887 7777766543 468999999999986
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHH--hC---CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKE--IG---AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~---~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.. ...++...+... .+ ..+++++||++|.|++++|+++++.+...++
T Consensus 123 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 123 NA--------------LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred cc--------------CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 43 222333333221 11 1368999999999999999999998876544
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.90 E-value=1.9e-23 Score=169.37 Aligned_cols=137 Identities=23% Similarity=0.285 Sum_probs=112.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc-----CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcch
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-----GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAV 74 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (228)
|||||||+++|+.+.|.+.+.+|++..+. +.+.++ +..+.+++||++|++.+..+++.+|+++
T Consensus 10 gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~a----------- 78 (202)
T cd04102 10 GVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQV----------- 78 (202)
T ss_pred CCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcC-----------
Confidence 79999999999999999999999976553 344553 5779999999999999999999999998
Q ss_pred hhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-------------
Q psy8274 75 KYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC------------- 141 (228)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~------------- 141 (228)
|++|+|||+++++||+.+. .|+..+....
T Consensus 79 -------------------------------------d~iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 79 -------------------------------------NGIILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred -------------------------------------CEEEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccc
Confidence 9999999999999999998 9999987631
Q ss_pred -------CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHH----HHHHHHHHhCCceEEEecccCCC
Q psy8274 142 -------PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP----QGLSMAKEIGAVKYLECSALTQK 199 (228)
Q Consensus 142 -------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~~~evSa~~~~ 199 (228)
.++|++|||||+|+.+.+ .++.+ ....+++.+| .+.++.++++..
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~r------------~~~~~~~~~~~~~ia~~~~-~~~i~~~c~~~~ 176 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPEK------------ESSGNLVLTARGFVAEQGN-AEEINLNCTNGR 176 (202)
T ss_pred cccccCCCCceEEEEEECccchhhc------------ccchHHHhhHhhhHHHhcC-CceEEEecCCcc
Confidence 368999999999997642 23333 2456678888 478888887543
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.90 E-value=1.5e-23 Score=162.83 Aligned_cols=146 Identities=19% Similarity=0.225 Sum_probs=107.2
Q ss_pred CCChhhhHHhhhhCC-CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++. +...+.||++.... .+....+.+.+||++|++.+..++..++..+
T Consensus 9 ~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 69 (162)
T cd04157 9 NSGKTTIINQLKPENAQSQIIVPTVGFNVE---SFEKGNLSFTAFDMSGQGKYRGLWEHYYKNI---------------- 69 (162)
T ss_pred CCCHHHHHHHHcccCCCcceecCccccceE---EEEECCEEEEEEECCCCHhhHHHHHHHHccC----------------
Confidence 799999999999876 46677788764322 2233457889999999999888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDL 155 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl 155 (228)
|++++|||++++.+|..+. .|+..+.+.. .+.|+++|+||+|+
T Consensus 70 --------------------------------d~ii~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl 116 (162)
T cd04157 70 --------------------------------QGIIFVIDSSDRLRLVVVK-DELELLLNHPDIKHRRVPILFFANKMDL 116 (162)
T ss_pred --------------------------------CEEEEEEeCCcHHHHHHHH-HHHHHHHcCcccccCCCCEEEEEeCccc
Confidence 9999999999999998887 6666664431 36899999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHH--HhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAK--EIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
.......+ ..+...+.. ... .+++++||++|.|++++|+++.+
T Consensus 117 ~~~~~~~~-----------~~~~l~~~~~~~~~-~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 117 PDALTAVK-----------ITQLLGLENIKDKP-WHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred cCCCCHHH-----------HHHHhCCccccCce-EEEEEeeCCCCCchHHHHHHHhc
Confidence 75421000 011111111 112 36899999999999999999865
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.90 E-value=6.1e-24 Score=167.18 Aligned_cols=149 Identities=16% Similarity=0.248 Sum_probs=113.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++ +...+.||++.. ...+.. ..+.+.+||++|+..++.++..+++++
T Consensus 9 ~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a----------------- 67 (167)
T cd04161 9 NAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEA----------------- 67 (167)
T ss_pred CCCHHHHHHHHhCC-CCccccCcccce-EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCC-----------------
Confidence 79999999999976 777888998754 233443 347889999999999888888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.+.. .+.|++||+||+|+.+.
T Consensus 68 -------------------------------~~ii~V~D~s~~~s~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 68 -------------------------------HGLVFVVDSSDDDRVQEVK-EILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred -------------------------------CEEEEEEECCchhHHHHHH-HHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 9999999999999999997 7877776543 47899999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCC-ceEEEecccCC------CCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGA-VKYLECSALTQ------KGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~evSa~~~------~~v~~lf~~l~~ 210 (228)
.+..+. +...++..++++.+. ..++++||++| .|+++.|+|+..
T Consensus 116 ~~~~~i--------~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 116 LLGADV--------IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCHHHH--------HHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 322111 111122233433332 46788999998 899999999975
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.90 E-value=5.1e-23 Score=162.53 Aligned_cols=142 Identities=17% Similarity=0.240 Sum_probs=108.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|++..+ ..+.+|++.. ...+.++ .+.+.+||++|++.++.++..++.++
T Consensus 24 ~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~----------------- 82 (173)
T cd04154 24 NAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFEST----------------- 82 (173)
T ss_pred CCCHHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCC-----------------
Confidence 7999999999998755 4566777632 2334444 37889999999998877777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 83 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 83 -------------------------------DALIWVVDSSDRLRLDDCK-RELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 9999999999999999887 666665432 257999999999999763
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH-----HhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK-----EIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
...++...+.. ..+ .+++++||++|.|++++|++++.
T Consensus 131 --------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 131 --------------LSEEEIREALELDKISSHH-WRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred --------------CCHHHHHHHhCccccCCCc-eEEEeccCCCCcCHHHHHHHHhc
Confidence 12333333332 223 58999999999999999999864
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.88 E-value=1.6e-22 Score=159.98 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=106.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++..+.+.. +.||++..+. .+.++ .+.+.+||++|+..+...+..++.++
T Consensus 25 ~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~----------------- 83 (174)
T cd04153 25 NAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNT----------------- 83 (174)
T ss_pred CCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcC-----------------
Confidence 799999999999988875 5677765543 23333 47899999999998887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|.... .++..+.+.. .+.|+++++||+|+...
T Consensus 84 -------------------------------d~vi~V~D~s~~~~~~~~~-~~l~~~~~~~~~~~~p~viv~NK~Dl~~~ 131 (174)
T cd04153 84 -------------------------------DAVILVIDSTDRERLPLTK-EELYKMLAHEDLRKAVLLVLANKQDLKGA 131 (174)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECCCCCCC
Confidence 9999999999999998887 4444443332 46899999999998753
Q ss_pred hHHHHHHhhccCccccHHHH-HHH----HHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQG-LSM----AKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~-~~~----~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
.+.++. ..+ ++..+ .+++++||++|.||+++|+++.+
T Consensus 132 --------------~~~~~i~~~l~~~~~~~~~-~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 132 --------------MTPAEISESLGLTSIRDHT-WHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred --------------CCHHHHHHHhCcccccCCc-eEEEecccCCCCCHHHHHHHHhc
Confidence 111221 111 12234 37999999999999999999864
No 117
>PLN00023 GTP-binding protein; Provisional
Probab=99.88 E-value=2.9e-22 Score=171.17 Aligned_cols=132 Identities=20% Similarity=0.280 Sum_probs=110.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc-------------CeEEeeeeeeCCCCcccccCCCCccccccch
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-------------GKPINLGLWDTAGQEDYDRLRPLSYPQTGLS 66 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 66 (228)
|||||||+++|+.+.|...+.+|++..+. +.+.++ ++.+.++|||++|++.|..+++.+|+++
T Consensus 31 GVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~A--- 107 (334)
T PLN00023 31 GVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQI--- 107 (334)
T ss_pred CCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCC---
Confidence 79999999999999999999999976653 455554 3578999999999999999999999998
Q ss_pred hHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----
Q psy8274 67 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----- 141 (228)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----- 141 (228)
+++|+|||+++++||+.+. .|+..+....
T Consensus 108 ---------------------------------------------dgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p 141 (334)
T PLN00023 108 ---------------------------------------------NGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAP 141 (334)
T ss_pred ---------------------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccc
Confidence 9999999999999999998 9999998753
Q ss_pred --------CCCCEEEEEeCCCCCCchHHHHHHhhccCcc---ccHHHHHHHHHHhCCceE
Q psy8274 142 --------PSTPIILVGTKLDLRDDKETIEKLKEKKLAP---ITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 142 --------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~ 190 (228)
.++|++|||||+||..... .+. +..+++..+++++|+.+.
T Consensus 142 ~~s~~~~~~~ipIILVGNK~DL~~~~~---------~r~~s~~~~e~a~~~A~~~g~l~~ 192 (334)
T PLN00023 142 LGSGGPGGLPVPYIVIGNKADIAPKEG---------TRGSSGNLVDAARQWVEKQGLLPS 192 (334)
T ss_pred cccccccCCCCcEEEEEECcccccccc---------ccccccccHHHHHHHHHHcCCCcc
Confidence 2489999999999965311 022 468899999999886543
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.88 E-value=3.6e-22 Score=155.07 Aligned_cols=143 Identities=23% Similarity=0.299 Sum_probs=106.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+.. +.||++..+. .+.. +..+.+.+||++|+..+...+..++..+
T Consensus 9 ~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~----------------- 68 (160)
T cd04156 9 SAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENT----------------- 68 (160)
T ss_pred CCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccC-----------------
Confidence 799999999999998864 4677654332 2333 3457899999999988877777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.+.. .+.|+++|+||+|+...
T Consensus 69 -------------------------------~~iv~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (160)
T cd04156 69 -------------------------------DGLVYVVDSSDEARLDESQ-KELKHILKNEHIKGVPVVLLANKQDLPGA 116 (160)
T ss_pred -------------------------------CEEEEEEECCcHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECcccccC
Confidence 9999999999999999887 6666554432 47999999999999653
Q ss_pred hHHHHHHhhccCccccHHHHH------HHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGL------SMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
. ..++.. .++...+ .+++++||++|.||+++|+++.+
T Consensus 117 ~--------------~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 117 L--------------TAEEITRRFKLKKYCSDRD-WYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred c--------------CHHHHHHHcCCcccCCCCc-EEEEecccccCCChHHHHHHHhc
Confidence 1 111111 2222233 47999999999999999999864
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.88 E-value=3.4e-22 Score=155.33 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=104.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++..+.+. .+.||++..+. .++...+.+.+||++|+..+..++..++..+
T Consensus 9 ~~GKTsl~~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 67 (158)
T cd04151 9 NAGKTTILYRLQLGEVV-TTIPTIGFNVE---TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNT----------------- 67 (158)
T ss_pred CCCHHHHHHHHccCCCc-CcCCccCcCeE---EEEECCEEEEEEECCCCHHHHHHHHHHhcCC-----------------
Confidence 79999999999888775 45677654432 2334457899999999998888888777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-CCCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++.++....+.|...+... ..+.|+++|+||+|+.+..
T Consensus 68 -------------------------------~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~ 116 (158)
T cd04151 68 -------------------------------DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL 116 (158)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC
Confidence 99999999999999887763444444433 2479999999999997532
Q ss_pred HHHHHHhhccCccccHHHHHHHH-----HHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMA-----KEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
...+..... ...+ .+++++||++|.|++++|+++++
T Consensus 117 --------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 117 --------------SEAEISEKLGLSELKDRT-WSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred --------------CHHHHHHHhCccccCCCc-EEEEEeeccCCCCHHHHHHHHhc
Confidence 111111111 1112 36999999999999999999875
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.87 E-value=6e-22 Score=154.86 Aligned_cols=144 Identities=22% Similarity=0.302 Sum_probs=105.4
Q ss_pred CCChhhhHHhhhhCCC------CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcch
Q psy8274 1 AVGKTCLLISYTTNAF------PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAV 74 (228)
Q Consensus 1 gvGKTsli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (228)
|+|||||++++..... ...+.+|++..+. .+.++ .+.+.+||++|+..+..++..++..+
T Consensus 9 ~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~----------- 74 (167)
T cd04160 9 NAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAEC----------- 74 (167)
T ss_pred CCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCC-----------
Confidence 7999999999986432 2344556544442 33444 47889999999998877777667776
Q ss_pred hhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeC
Q psy8274 75 KYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTK 152 (228)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK 152 (228)
|++++|+|+++++++.... .|+..+.+.. .+.|++||+||
T Consensus 75 -------------------------------------~~~v~vvd~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK 116 (167)
T cd04160 75 -------------------------------------HAIIYVIDSTDRERFEESK-SALEKVLRNEALEGVPLLILANK 116 (167)
T ss_pred -------------------------------------CEEEEEEECchHHHHHHHH-HHHHHHHhChhhcCCCEEEEEEc
Confidence 9999999999999998887 6666655432 47999999999
Q ss_pred CCCCCchHHHHHHhhccCccccHHHHHHHHHHh------CCceEEEecccCCCCHHHHHHHHHH
Q psy8274 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI------GAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 153 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
+|+... ...++...+.+.. ...+++++||++|.|++++|+++.+
T Consensus 117 ~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 117 QDLPDA--------------LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred cccccC--------------CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 998653 2223333332221 1257999999999999999999875
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.87 E-value=8.8e-22 Score=152.69 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=107.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++++++.+ ..+.+|++..+. .+.++ .+.+.+||++|++.+..++..++..+
T Consensus 9 ~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~----------------- 67 (158)
T cd00878 9 GAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENT----------------- 67 (158)
T ss_pred CCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccC-----------------
Confidence 7999999999998874 356666654332 23333 47899999999998887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 68 -------------------------------~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 68 -------------------------------NGIIFVVDSSDRERIEEAK-EELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 9999999999999999987 6666655432 47899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH-----HhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK-----EIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
. +.++...... ... .+++++||++|.|++++|++++.
T Consensus 116 ~--------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 116 L--------------SVSELIEKLGLEKILGRR-WHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred c--------------CHHHHHHhhChhhccCCc-EEEEEeeCCCCCCHHHHHHHHhh
Confidence 2 1222222221 123 57999999999999999999875
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.87 E-value=1e-21 Score=157.17 Aligned_cols=144 Identities=19% Similarity=0.331 Sum_probs=109.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++.++.+. .+.||.+.. ...+.+++ +.+.+||++|+..+..++..++.++
T Consensus 29 ~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~a----------------- 87 (190)
T cd00879 29 NAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEV----------------- 87 (190)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccC-----------------
Confidence 79999999999988774 567776543 23455555 5788999999988777777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|+|+++..+|.... .|+..+.... .+.|+++++||+|+...
T Consensus 88 -------------------------------d~iilV~D~~~~~s~~~~~-~~~~~i~~~~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 88 -------------------------------DGIVFLVDAADPERFQESK-EELDSLLSDEELANVPFLILGNKIDLPGA 135 (190)
T ss_pred -------------------------------CEEEEEEECCcHHHHHHHH-HHHHHHHcCccccCCCEEEEEeCCCCCCC
Confidence 9999999999999998877 6666665432 46899999999998753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHH--------------h-CCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKE--------------I-GAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~-~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
++.++...+.+. . ...+++++||++|.|++++|+++.+.
T Consensus 136 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 136 --------------VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred --------------cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 334444444432 1 11468999999999999999999865
No 123
>KOG4252|consensus
Probab=99.87 E-value=9.3e-24 Score=163.19 Aligned_cols=153 Identities=24% Similarity=0.411 Sum_probs=142.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
+|||||+++||+.+-|...|..|++.++ ...+.+++..+...+||++|++.+..+...||+++
T Consensus 30 ~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga---------------- 93 (246)
T KOG4252|consen 30 SVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA---------------- 93 (246)
T ss_pred ccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc----------------
Confidence 6999999999999999999999997766 56778888889999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
.+.++||.-||+.||+... .|++.+......+|.++|-||+||.+.
T Consensus 94 --------------------------------qa~vLVFSTTDr~SFea~~-~w~~kv~~e~~~IPtV~vqNKIDlved- 139 (246)
T KOG4252|consen 94 --------------------------------QASVLVFSTTDRYSFEATL-EWYNKVQKETERIPTVFVQNKIDLVED- 139 (246)
T ss_pred --------------------------------cceEEEEecccHHHHHHHH-HHHHHHHHHhccCCeEEeeccchhhHh-
Confidence 9999999999999999999 999999999999999999999999986
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+++..+++.+++.+.+ +++.+|++...||..+|.-++++..+.
T Consensus 140 -----------s~~~~~evE~lak~l~~-RlyRtSvked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 140 -----------SQMDKGEVEGLAKKLHK-RLYRTSVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred -----------hhcchHHHHHHHHHhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 56999999999999995 899999999999999999999887654
No 124
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.86 E-value=7e-21 Score=155.46 Aligned_cols=169 Identities=31% Similarity=0.447 Sum_probs=132.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccce-eEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|..+.|...+.+|++..+.. .....+..+.+.+|||+|++.++.+++.++.++
T Consensus 15 g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~---------------- 78 (219)
T COG1100 15 GVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGA---------------- 78 (219)
T ss_pred CccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCC----------------
Confidence 799999999999999999999998776654 444455588999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++..++..+.+.|...+...+ +..|+++|+||+|+...
T Consensus 79 --------------------------------~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 79 --------------------------------NGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred --------------------------------CEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 999999999997777777669999999887 47999999999999987
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh--CCceEEEeccc--CCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI--GAVKYLECSAL--TQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~evSa~--~~~~v~~lf~~l~~~i~~~~~ 217 (228)
............+..........+... ....++++|++ .+.+|.++|.++++.+.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 127 QSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred hhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 554433332211233333333333333 22449999999 999999999999999975443
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.86 E-value=2.9e-21 Score=154.35 Aligned_cols=144 Identities=15% Similarity=0.245 Sum_probs=105.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++..+.+. .+.||.+... ..+.+++ +.+.+||++|+..+..++..++.++
T Consensus 27 ~~GKTsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~a----------------- 85 (184)
T smart00178 27 NAGKTTLLHMLKNDRLA-QHQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEV----------------- 85 (184)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCC-----------------
Confidence 79999999999988775 3455554322 2233333 6789999999998888888888877
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|++++.++.... .++..+.+. ..+.|+++|+||+|+...
T Consensus 86 -------------------------------d~ii~vvD~~~~~~~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 86 -------------------------------NGIVYLVDAYDKERFAESK-RELDALLSDEELATVPFLILGNKIDAPYA 133 (184)
T ss_pred -------------------------------CEEEEEEECCcHHHHHHHH-HHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999999999999998887 555555432 247899999999998653
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH-----------HhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK-----------EIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
++.++...... ......++++||++|.|++++++|+..+
T Consensus 134 --------------~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 134 --------------ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred --------------CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 22222222111 1123469999999999999999999865
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.85 E-value=5.1e-21 Score=147.09 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=107.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++.+..|...+.||++..+.. +..+ .+.+.+||++|+..+..++..++..+
T Consensus 9 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~----------------- 68 (159)
T cd04159 9 NSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVTLKVWDLGGQPRFRSMWERYCRGV----------------- 68 (159)
T ss_pred CCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEEEEEEECCCCHhHHHHHHHHHhcC-----------------
Confidence 799999999999999998999988655432 2223 37899999999988877777677666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-C-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-C-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++..++.... .|+..+... . .+.|+++|+||+|+...
T Consensus 69 -------------------------------d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 69 -------------------------------NAIVYVVDAADRTALEAAK-NELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999999999999998876 555444332 2 46899999999998764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
....+...... .......+ .+++++||++|.|++++|+++.+
T Consensus 117 ~~~~~~~~~~~---------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 117 LSVDELIEQMN---------LKSITDRE-VSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cCHHHHHHHhC---------cccccCCc-eEEEEEEeccCCChHHHHHHHhh
Confidence 21111100000 00001122 47899999999999999999875
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=9.8e-21 Score=149.72 Aligned_cols=147 Identities=16% Similarity=0.176 Sum_probs=102.8
Q ss_pred CCChhhhHHhhhhCC-------CCCCCCcee------eeccc-ee--EEE---cCeEEeeeeeeCCCCcccccCCCCccc
Q psy8274 1 AVGKTCLLISYTTNA-------FPGEYIPTV------FDNYS-AN--VMV---DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (228)
Q Consensus 1 gvGKTsli~~~~~~~-------~~~~~~~t~------~~~~~-~~--~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~ 61 (228)
|||||||+++|++.. +...+.++. +.++. .. +.+ ++..+.+.+|||+|++.+...+..++.
T Consensus 10 ~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 89 (179)
T cd01890 10 DHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLA 89 (179)
T ss_pred CCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHH
Confidence 799999999999742 333333332 11221 11 222 567788999999999988776666666
Q ss_pred cccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC
Q psy8274 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~ 141 (228)
.+ |++|+|||+++..++.... .|.... .
T Consensus 90 ~a------------------------------------------------d~~i~v~D~~~~~~~~~~~-~~~~~~-~-- 117 (179)
T cd01890 90 AC------------------------------------------------EGALLLVDATQGVEAQTLA-NFYLAL-E-- 117 (179)
T ss_pred hc------------------------------------------------CeEEEEEECCCCccHhhHH-HHHHHH-H--
Confidence 66 9999999999987777665 554322 2
Q ss_pred CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc--eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 142 PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV--KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.++|+++|+||+|+.+.. .......+++.+++. .++++||++|.|++++|+++...+.
T Consensus 118 ~~~~iiiv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 118 NNLEIIPVINKIDLPSAD--------------PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred cCCCEEEEEECCCCCcCC--------------HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 368999999999986531 111233455555642 4899999999999999999998763
No 128
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.85 E-value=7.7e-21 Score=150.88 Aligned_cols=144 Identities=23% Similarity=0.341 Sum_probs=109.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||++++..+.+. .+.||.+.... .+..++ +.+.+||++|+..++.+|+.++.++
T Consensus 24 ~sGKTtll~~l~~~~~~-~~~pT~g~~~~-~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~----------------- 82 (175)
T PF00025_consen 24 GSGKTTLLNRLKNGEIS-ETIPTIGFNIE-EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNA----------------- 82 (175)
T ss_dssp TSSHHHHHHHHHSSSEE-EEEEESSEEEE-EEEETT--EEEEEEEESSSGGGGGGGGGGHTTE-----------------
T ss_pred ccchHHHHHHhhhcccc-ccCcccccccc-eeeeCc--EEEEEEeccccccccccceeecccc-----------------
Confidence 79999999999987654 46677654432 334444 6789999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-C-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-C-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|.|.+|.+.+.... ..+..+... . .+.|+++++||+|+.+.
T Consensus 83 -------------------------------~~iIfVvDssd~~~l~e~~-~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 83 -------------------------------DGIIFVVDSSDPERLQEAK-EELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp -------------------------------SEEEEEEETTGGGGHHHHH-HHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred -------------------------------ceeEEEEecccceeecccc-cchhhhcchhhcccceEEEEeccccccCc
Confidence 9999999999999999887 444444432 2 47999999999998864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH------HhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK------EIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
. +.++...... ... ..++.+||.+|+|+.+.|+|+.++|
T Consensus 131 ~--------------~~~~i~~~l~l~~l~~~~~-~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 131 M--------------SEEEIKEYLGLEKLKNKRP-WSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp S--------------THHHHHHHTTGGGTTSSSC-EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred c--------------hhhHHHhhhhhhhcccCCc-eEEEeeeccCCcCHHHHHHHHHhcC
Confidence 2 2222222211 123 5689999999999999999999875
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.84 E-value=3.9e-20 Score=144.71 Aligned_cols=155 Identities=22% Similarity=0.255 Sum_probs=98.2
Q ss_pred CCChhhhHHhhhhCCCCCC-CCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCC-ccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGE-YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL-SYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+... +..+..+.....+ +...+.+.+|||||+.... .+.. .+... .+. ++
T Consensus 10 ~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~--~~~----~~---- 76 (168)
T cd01897 10 NVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRP-LEERNTIEMQ--AIT----AL---- 76 (168)
T ss_pred CCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCcc-ccCCchHHHH--HHH----HH----
Confidence 7999999999998876422 2221111111111 2234789999999985421 1110 00000 000 00
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhH--HHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASF--ENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~--~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
. ...|++++|+|+++..++ .... .|+..+.....+.|+++|+||+|+.
T Consensus 77 ------------------~-----------~~~d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 77 ------------------A-----------HLRAAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred ------------------H-----------hccCcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccC
Confidence 0 001899999999988764 5554 6788877665679999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+... +. +...+.+..+ .+++++||++|.|++++|+++.+.++
T Consensus 127 ~~~~------------~~--~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 127 TFED------------LS--EIEEEEELEG-EEVLKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred chhh------------HH--HHHHhhhhcc-CceEEEEecccCCHHHHHHHHHHHhC
Confidence 6432 11 1334444444 58999999999999999999998764
No 130
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.84 E-value=6e-21 Score=145.63 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=62.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|++++|||++++.++... .|...+ ..|+++|+||+|+.+. ....+++..+++..+..+++
T Consensus 64 d~vilv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~ 123 (142)
T TIGR02528 64 DVIALVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA-------------DVDIERAKELLETAGAEPIF 123 (142)
T ss_pred CEEEEEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc-------------ccCHHHHHHHHHHcCCCcEE
Confidence 999999999999998653 454332 2499999999999752 24556677888888766899
Q ss_pred EecccCCCCHHHHHHHHH
Q psy8274 192 ECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~ 209 (228)
++||++|.|++++|+++.
T Consensus 124 ~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 124 EISSVDEQGLEALVDYLN 141 (142)
T ss_pred EEecCCCCCHHHHHHHHh
Confidence 999999999999999874
No 131
>KOG0070|consensus
Probab=99.82 E-value=4.8e-20 Score=143.66 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=117.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+||||+++++..+.+... .||++.... .+.-+.+.+.+||++||++++++|.+||.+.
T Consensus 27 ~AGKTTILykLk~~E~vtt-vPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t----------------- 85 (181)
T KOG0070|consen 27 AAGKTTILYKLKLGEIVTT-VPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNT----------------- 85 (181)
T ss_pred CCCceeeeEeeccCCcccC-CCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCC-----------------
Confidence 7899999999999988755 999987665 2233468899999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
+++|||.|.+|++.+..+.+++...+.+.. ...|+++.+||.|+...-
T Consensus 86 -------------------------------~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 86 -------------------------------QGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred -------------------------------cEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC
Confidence 999999999999999999867666666654 579999999999998763
Q ss_pred HHHHHHhhccCccccHHHHHHHHHH-----hCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKE-----IGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+ ..+....... .. ..+-.++|.+|+|+.+.++|+...+..
T Consensus 135 s--------------~~ei~~~L~l~~l~~~~-w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 135 S--------------AAEITNKLGLHSLRSRN-WHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred C--------------HHHHHhHhhhhccCCCC-cEEeeccccccccHHHHHHHHHHHHhc
Confidence 3 2222222111 22 356778999999999999999988764
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=3.2e-19 Score=139.62 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=67.2
Q ss_pred ceEEEEEecCCh-hhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-C
Q psy8274 112 DVFQICFSLVNP-ASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-G 186 (228)
Q Consensus 112 d~vi~v~Dvt~~-~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~ 186 (228)
|++++|+|++++ .+++.+. .|.+.+.... ...|+++|+||+|+..... ..+....+.+.. +
T Consensus 80 d~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~ 145 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEE-------------LFELLKELLKELWG 145 (170)
T ss_pred CEEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchh-------------hHHHHHHHHhhCCC
Confidence 999999999999 7998887 8888887764 2689999999999976432 122333444443 4
Q ss_pred CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+++++||+++.|++++|+++.+.
T Consensus 146 -~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 146 -KPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred -CCEEEEecCCCCCHHHHHHHHHhh
Confidence 579999999999999999999864
No 133
>KOG0073|consensus
Probab=99.81 E-value=3.8e-19 Score=135.72 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=114.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||+++|.+.. .+...||.+-... .+..+.+.+.+||++||..++..|+.||.++
T Consensus 26 NsGKTti~~kl~~~~-~~~i~pt~gf~Ik---tl~~~~~~L~iwDvGGq~~lr~~W~nYfest----------------- 84 (185)
T KOG0073|consen 26 NSGKTTIVKKLLGED-TDTISPTLGFQIK---TLEYKGYTLNIWDVGGQKTLRSYWKNYFEST----------------- 84 (185)
T ss_pred CCCchhHHHHhcCCC-ccccCCccceeeE---EEEecceEEEEEEcCCcchhHHHHHHhhhcc-----------------
Confidence 799999999998766 3455566543222 3334558999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
||+|+|+|+.|+..++.....+...+...+ -..|++|++||.|+...-
T Consensus 85 -------------------------------dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l 133 (185)
T KOG0073|consen 85 -------------------------------DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGAL 133 (185)
T ss_pred -------------------------------CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcccc
Confidence 999999999999999998844444444333 368999999999998431
Q ss_pred HHHHHHhhccCcccc-HHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPIT-YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
... .+. .-+...+++.+. ++.+-||+.+|+++.+.|+|++..+..
T Consensus 134 ~~~---------~i~~~~~L~~l~ks~~-~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 134 SLE---------EISKALDLEELAKSHH-WRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred CHH---------HHHHhhCHHHhccccC-ceEEEEeccccccHHHHHHHHHHHHHH
Confidence 100 011 112334445566 589999999999999999999998875
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.81 E-value=6.5e-19 Score=134.48 Aligned_cols=146 Identities=35% Similarity=0.479 Sum_probs=110.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++++.+.+...+.++++..+. ..+..++..+.+.+||++|+..+..++...+..+
T Consensus 11 ~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~---------------- 74 (161)
T TIGR00231 11 NVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAV---------------- 74 (161)
T ss_pred CCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhh----------------
Confidence 79999999999999887777777755554 3456777778899999999888877666555555
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh-hhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP-ASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~-~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~ 157 (228)
++++.++|++.. .++......|...+.+... +.|+++|+||+|+..
T Consensus 75 --------------------------------~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 75 --------------------------------ESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred --------------------------------hEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 899999998877 6676655456666666554 789999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHH
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEA 208 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l 208 (228)
.. ... +........+..+++++||++|.|++++|.++
T Consensus 123 ~~-------------~~~-~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 123 AK-------------LKT-HVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred ch-------------hhH-HHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 41 222 22233333444689999999999999999886
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.81 E-value=2.3e-19 Score=141.08 Aligned_cols=140 Identities=21% Similarity=0.303 Sum_probs=100.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++.+..+. .+.+|.+..+ ..+..++ ..+.+||++|+..+...+..++..+
T Consensus 24 g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~----------------- 82 (173)
T cd04155 24 NAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENT----------------- 82 (173)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCC-----------------
Confidence 79999999999987653 3556655322 2334454 6789999999887766665556665
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++..++.... .++..+... ..++|+++++||+|+.+.
T Consensus 83 -------------------------------~~ii~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 83 -------------------------------DCLIYVIDSADKKRLEEAG-AELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 9999999999999998876 454444332 246999999999998754
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCC-------ceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGA-------VKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
.+ . ..+.+.+++ .+++++||++|.|++++|+|+++
T Consensus 131 ~~--------------~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 131 AP--------------A---EEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CC--------------H---HHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 21 1 112222221 35789999999999999999975
No 136
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.80 E-value=1.1e-18 Score=134.77 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=99.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCce-eeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPT-VFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++.+..+...+.++ ..+.....+.+++ ..+.+|||||+..+...... ..+....
T Consensus 6 ~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~------~~~~~~~-------- 69 (158)
T cd01879 6 NVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSED------EKVARDF-------- 69 (158)
T ss_pred CCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChh------HHHHHHH--------
Confidence 79999999999987644333333 3333445666676 46899999999776542110 0000000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+ ...++|++++|+|++++++.. .|...+... ++|+++|+||+|+.+..
T Consensus 70 -------------------~-------~~~~~d~vi~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~ 117 (158)
T cd01879 70 -------------------L-------LGEKPDLIVNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKR 117 (158)
T ss_pred -------------------h-------cCCCCcEEEEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccc
Confidence 0 001229999999999865533 333344333 68999999999997642
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+.. +...+.+.++ .+++++||+++.|++++|+++.+.+
T Consensus 118 ------------~~~~-~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 118 ------------GIKI-DLDKLSELLG-VPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ------------cchh-hHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHHHHh
Confidence 1222 2456677778 4899999999999999999998753
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.80 E-value=4.3e-19 Score=137.73 Aligned_cols=143 Identities=19% Similarity=0.165 Sum_probs=90.6
Q ss_pred CCChhhhHHhhhhC---CCCCCCCc--eeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchh
Q psy8274 1 AVGKTCLLISYTTN---AFPGEYIP--TVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVK 75 (228)
Q Consensus 1 gvGKTsli~~~~~~---~~~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (228)
|||||||+++|++. .+...+.+ |+...+ ..+.+.+ ...+.+|||||++.+.......+..+
T Consensus 10 ~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~a------------ 75 (164)
T cd04171 10 DHGKTTLIKALTGIETDRLPEEKKRGITIDLGF-AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGI------------ 75 (164)
T ss_pred CCCHHHHHHHHhCcccccchhhhccCceEEeee-EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcC------------
Confidence 79999999999953 34333333 222222 2334432 35789999999987654333334444
Q ss_pred hhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeC
Q psy8274 76 YLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTPIILVGTK 152 (228)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK 152 (228)
|++++|+|+++ +.++..+. .+... ...|+++|+||
T Consensus 76 ------------------------------------d~ii~V~d~~~~~~~~~~~~~~-----~~~~~-~~~~~ilv~NK 113 (164)
T cd04171 76 ------------------------------------DLVLLVVAADEGIMPQTREHLE-----ILELL-GIKRGLVVLTK 113 (164)
T ss_pred ------------------------------------CEEEEEEECCCCccHhHHHHHH-----HHHHh-CCCcEEEEEEC
Confidence 99999999987 44443332 22222 23499999999
Q ss_pred CCCCCchHHHHHHhhccCccccHHHHHHHHHH---hCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKE---IGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 153 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
+|+...... .....+...+.+. .+ .+++++||+++.|++++|+.+..
T Consensus 114 ~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 114 ADLVDEDWL----------ELVEEEIRELLAGTFLAD-APIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred ccccCHHHH----------HHHHHHHHHHHHhcCcCC-CcEEEEeCCCCcCHHHHHHHHhh
Confidence 999764210 1112233344433 24 58999999999999999998753
No 138
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=3.9e-18 Score=148.06 Aligned_cols=159 Identities=20% Similarity=0.198 Sum_probs=107.8
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++... ...|..|........+.++ ....+.+||+||...-..
T Consensus 168 NaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~------------------------- 221 (335)
T PRK12299 168 NAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGAS------------------------- 221 (335)
T ss_pred CCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCC-------------------------
Confidence 7999999999997543 2344444433333344442 123578999999632110
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~ 156 (228)
.+.++...|..+.+. ++++++|+|+++.++++.+. .|..++..+.+ +.|+++|+||+|+.
T Consensus 222 ---~~~gLg~~flrhie~-------------a~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 222 ---EGAGLGHRFLKHIER-------------TRLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred ---ccccHHHHHHHHhhh-------------cCEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 111222223333222 29999999999988999987 99999988753 68999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.... +..++...+++..+ .+++++||+++.||+++|+++.+.+...
T Consensus 285 ~~~~------------~~~~~~~~~~~~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 285 DEEE------------EREKRAALELAALG-GPVFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred Cchh------------HHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 6422 22223444445555 5899999999999999999999887653
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.79 E-value=2.2e-18 Score=129.95 Aligned_cols=147 Identities=39% Similarity=0.686 Sum_probs=108.5
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||++++.+... ...+.+|..+.+.......+....+.+||++|...+.......+..+
T Consensus 6 ~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~---------------- 69 (157)
T cd00882 6 GVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGA---------------- 69 (157)
T ss_pred CCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCC----------------
Confidence 7999999999998877 55666666444555666667778999999999887665544444555
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhh--HHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKW--YPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~--~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|++++|+|++++.++..+. .| ...........|+++|+||+|+..
T Consensus 70 --------------------------------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 70 --------------------------------DGIILVYDVTDRESFENVK-EWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhhccCCCcEEEEEecccccc
Confidence 9999999999999999887 55 222233345799999999999986
Q ss_pred chHHHHHHhhccCccccHHH-HHHHHHHhCCceEEEecccCCCCHHHHHHHHH
Q psy8274 158 DKETIEKLKEKKLAPITYPQ-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~ 209 (228)
... ..... ........+ .+++++|+..+.|++++++++.
T Consensus 117 ~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 117 ERV------------VSEEELAEQLAKELG-VPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ccc------------hHHHHHHHHHHhhcC-CcEEEEecCCCCChHHHHHHHh
Confidence 532 11111 223333334 6899999999999999999875
No 140
>KOG3883|consensus
Probab=99.79 E-value=2.4e-18 Score=130.09 Aligned_cols=156 Identities=27% Similarity=0.349 Sum_probs=132.1
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEE-cCeEEeeeeeeCCCCccc-ccCCCCccccccchhHHhhcchhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMV-DGKPINLGLWDTAGQEDY-DRLRPLSYPQTGLSMAKEIGAVKY 76 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 76 (228)
+||||+|+.+++.+.. ..++.||++|.|...+.. +|..-.+.++||.|-... ..+-.+|+..+
T Consensus 19 ~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a------------- 85 (198)
T KOG3883|consen 19 SVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA------------- 85 (198)
T ss_pred cccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC-------------
Confidence 6899999999996654 346889999999877765 466678999999998776 45667777777
Q ss_pred hhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCC
Q psy8274 77 LECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLD 154 (228)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~D 154 (228)
|++++||+..|++||+.+. -+...|.++.+ .+||+++|||+|
T Consensus 86 -----------------------------------DafVLVYs~~d~eSf~rv~-llKk~Idk~KdKKEvpiVVLaN~rd 129 (198)
T KOG3883|consen 86 -----------------------------------DAFVLVYSPMDPESFQRVE-LLKKEIDKHKDKKEVPIVVLANKRD 129 (198)
T ss_pred -----------------------------------ceEEEEecCCCHHHHHHHH-HHHHHHhhccccccccEEEEechhh
Confidence 9999999999999999987 67777777654 489999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
+.++ +.++.+-++.||+.-. +..+|+++.+...+-+-|.-++..+..++.+
T Consensus 130 r~~p------------~~vd~d~A~~Wa~rEk-vkl~eVta~dR~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 130 RAEP------------REVDMDVAQIWAKREK-VKLWEVTAMDRPSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred cccc------------hhcCHHHHHHHHhhhh-eeEEEEEeccchhhhhHHHHHHHhccCCccc
Confidence 9876 6689999999999888 6999999999999999999999998876553
No 141
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=4.4e-18 Score=130.96 Aligned_cols=149 Identities=19% Similarity=0.167 Sum_probs=95.7
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++++.+.. +...+.++..+........++ ..+.+|||||...+.... ...+.+...
T Consensus 7 ~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~-------~~~~~~~~~------ 71 (157)
T cd01894 7 NVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGI-------SKEIREQAE------ 71 (157)
T ss_pred CCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHH-------HHHHHHHHH------
Confidence 799999999999765 334444544444444455555 578899999987654300 000000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.. ...+|++++|+|..++.+.... .+...+... ..|+++|+||+|+...
T Consensus 72 --------------~~-------------~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~ 120 (157)
T cd01894 72 --------------LA-------------IEEADVILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKE 120 (157)
T ss_pred --------------HH-------------HHhCCEEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCCh
Confidence 00 0112999999999876655443 233344433 5999999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.. . .......++.+++++|+++|.|++++|+++++.+
T Consensus 121 ~~------------~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 121 ED------------E-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred HH------------H-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 32 1 1222345645789999999999999999998753
No 142
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.77 E-value=4.5e-18 Score=133.57 Aligned_cols=154 Identities=23% Similarity=0.214 Sum_probs=97.6
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++++++..+ ...+..+..+.....+.++ + ..+.+||+||............. +.++
T Consensus 6 ~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~---~~~~---------- 70 (176)
T cd01881 6 NVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGN---QFLA---------- 70 (176)
T ss_pred CCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccH---HHHH----------
Confidence 7999999999998764 2344444433333334444 4 56799999997432111000000 0000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh------hhHHHHHHhhHHHHhhhC--------CCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP------ASFENVRAKWYPEVRHHC--------PST 144 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~------~s~~~~~~~~~~~l~~~~--------~~~ 144 (228)
.. ..+|++++|+|+++. .++..+. .|...+.... .+.
T Consensus 71 ---------------~~-------------~~~d~ii~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (176)
T cd01881 71 ---------------HI-------------RRADAILHVVDASEDDDIGGVDPLEDYE-ILNAELKLYDLETILGLLTAK 121 (176)
T ss_pred ---------------HH-------------hccCEEEEEEeccCCccccccCHHHHHH-HHHHHHHHhhhhhHHHHHhhC
Confidence 00 012999999999998 5787776 6666666443 368
Q ss_pred CEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 145 PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 145 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
|+++|+||+|+..... .............+ .+++++||+++.|++++++++...
T Consensus 122 p~ivv~NK~Dl~~~~~------------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 122 PVIYVLNKIDLDDAEE------------LEEELVRELALEEG-AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CeEEEEEchhcCchhH------------HHHHHHHHHhcCCC-CCEEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999986532 11111222333334 579999999999999999998764
No 143
>KOG0075|consensus
Probab=99.77 E-value=7.3e-19 Score=131.97 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=119.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
++|||||++...++.|.+...||++.... .+....+.+.+||.+||..++.+|..|++++
T Consensus 30 ~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v----------------- 89 (186)
T KOG0075|consen 30 NSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGV----------------- 89 (186)
T ss_pred cCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcC-----------------
Confidence 68999999999999999999999986555 5555668999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
+++++|.|..|++.+....+++...+.+.. ..+|+++.|||.|+...-
T Consensus 90 -------------------------------~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 90 -------------------------------SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred -------------------------------cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence 999999999999998888755555555443 479999999999998763
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+...++..+..++ ... +.+|.+||+...|++.+..|++++-.
T Consensus 139 ~~~~li~rmgL~sit---------dRE-vcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 139 SKIALIERMGLSSIT---------DRE-VCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred cHHHHHHHhCccccc---------cce-EEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 322211111111111 112 46899999999999999999998654
No 144
>KOG0096|consensus
Probab=99.77 E-value=6.2e-19 Score=137.60 Aligned_cols=150 Identities=25% Similarity=0.371 Sum_probs=128.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeE-EEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|.|||+++.|++.+.|...|.+|++......+ ..+...+.+..|||+|++.+..++..+|.+.
T Consensus 20 g~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~---------------- 83 (216)
T KOG0096|consen 20 GTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQG---------------- 83 (216)
T ss_pred cccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEec----------------
Confidence 68999999999999999999999977665443 3344479999999999999999999999988
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
.+.|++||++.+-++.++. .|...+.+.+.++||++.|||.|...+.
T Consensus 84 --------------------------------qcAiimFdVtsr~t~~n~~-rwhrd~~rv~~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 84 --------------------------------QCAIIMFDVTSRFTYKNVP-RWHRDLVRVRENIPIVLCGNKVDIKARK 130 (216)
T ss_pred --------------------------------ceeEEEeeeeehhhhhcch-HHHHHHHHHhcCCCeeeeccceeccccc
Confidence 8899999999999999998 9999999999999999999999988752
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
...+...+-+... ..|+++||+++.|.+.-|.++.+++.-
T Consensus 131 --------------~k~k~v~~~rkkn-l~y~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 131 --------------VKAKPVSFHRKKN-LQYYEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred --------------cccccceeeeccc-ceeEEeecccccccccchHHHhhhhcC
Confidence 1223344555566 489999999999999999999998764
No 145
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.77 E-value=7.9e-18 Score=131.34 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=96.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||+++|..+.+...+.++....+. ..+..+ +....+.+|||+|+..+..++...+..+
T Consensus 10 ~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~--------------- 74 (168)
T cd01887 10 DHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLT--------------- 74 (168)
T ss_pred CCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhc---------------
Confidence 79999999999998886654444432222 233333 2356789999999987766555444444
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++...-... ..+..+.. .+.|+++|+||+|+...
T Consensus 75 ---------------------------------d~il~v~d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 75 ---------------------------------DIAILVVAADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ---------------------------------CEEEEEEECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccc
Confidence 999999999885322221 11222333 36899999999998753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH----Hh-CCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK----EI-GAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~----~~-~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
... + +. .....+.. .+ ...+++++||++|.|++++|+++.+...
T Consensus 118 ~~~-~---------~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 118 NPE-R---------VK-NELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cHH-H---------HH-HHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 210 0 00 00111100 11 1247999999999999999999987653
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.76 E-value=1.8e-18 Score=139.66 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=87.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCccccc-----------CCCCccc-cccchhH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR-----------LRPLSYP-QTGLSMA 68 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~~~~~-~~~~~~~ 68 (228)
|||||||+++|.++.+...+.|++... ...+... .+.+|||+|...... .+..++. .+
T Consensus 19 ~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 88 (201)
T PRK04213 19 NVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNA----- 88 (201)
T ss_pred CCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhh-----
Confidence 799999999999888765555544221 2222222 588999999633221 1111111 00
Q ss_pred HhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHH---------HHHhhHHHHhh
Q psy8274 69 KEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFEN---------VRAKWYPEVRH 139 (228)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~---------~~~~~~~~l~~ 139 (228)
..++++++|.|.++...+.. ....+...+..
T Consensus 89 ----------------------------------------~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (201)
T PRK04213 89 ----------------------------------------DRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE 128 (201)
T ss_pred ----------------------------------------hhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH
Confidence 01177788877754322210 00011222222
Q ss_pred hCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--------ceEEEecccCCCCHHHHHHHHHHH
Q psy8274 140 HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--------VKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 140 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.++|+++|+||+|+.... .+.+..+++.+++ .+++++||++| |++++|+++...
T Consensus 129 --~~~p~iiv~NK~Dl~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 129 --LGIPPIVAVNKMDKIKNR---------------DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred --cCCCeEEEEECccccCcH---------------HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHh
Confidence 379999999999997542 1233445555553 25899999999 999999999998
Q ss_pred hcC
Q psy8274 212 VLC 214 (228)
Q Consensus 212 i~~ 214 (228)
+..
T Consensus 191 ~~~ 193 (201)
T PRK04213 191 LHE 193 (201)
T ss_pred hcC
Confidence 654
No 147
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.76 E-value=4.4e-18 Score=137.74 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=97.1
Q ss_pred CCChhhhHHhhhhCCCCCC--CCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGE--YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++++++..+... +.+|.. .....+.+++. ..+.+|||+|...... . .+...
T Consensus 51 g~GKStLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~i~Dt~G~~~~~~--~--------~~~~~-------- 110 (204)
T cd01878 51 NAGKSTLFNALTGADVYAEDQLFATLD-PTTRRLRLPDG-REVLLTDTVGFIRDLP--H--------QLVEA-------- 110 (204)
T ss_pred CCCHHHHHHHHhcchhccCCccceecc-ceeEEEEecCC-ceEEEeCCCccccCCC--H--------HHHHH--------
Confidence 7999999999998864322 223332 22233344443 3688999999743210 0 00000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~ 157 (228)
+...... ...+|++++|+|++++.++.... .|...+.... .+.|+++|+||+|+..
T Consensus 111 ------------~~~~~~~----------~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 111 ------------FRSTLEE----------VAEADLLLHVVDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred ------------HHHHHHH----------HhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 0000000 01129999999999999988876 6777776654 3689999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
... .. ......+ .+++++||+++.|++++|+++...+
T Consensus 168 ~~~------------~~-----~~~~~~~-~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 168 DEE------------LE-----ERLEAGR-PDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred hHH------------HH-----HHhhcCC-CceEEEEcCCCCCHHHHHHHHHhhC
Confidence 422 11 2233334 5799999999999999999998753
No 148
>KOG1673|consensus
Probab=99.75 E-value=1.2e-17 Score=126.56 Aligned_cols=156 Identities=26% Similarity=0.482 Sum_probs=131.0
Q ss_pred CChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 2 vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
+|||||+-.|+++.+.+.+..+.+.++ .+++.+.|..+.+.|||.+|++.+....|..+.++
T Consensus 31 iGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~ds----------------- 93 (205)
T KOG1673|consen 31 IGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDS----------------- 93 (205)
T ss_pred cCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCc-----------------
Confidence 799999999999999888888887776 57889999999999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc--
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD-- 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~-- 158 (228)
-+++|+||.|.++++..+. .||..-+..+...--|+||+|.|+.-.
T Consensus 94 -------------------------------vaIlFmFDLt~r~TLnSi~-~WY~QAr~~NktAiPilvGTKyD~fi~lp 141 (205)
T KOG1673|consen 94 -------------------------------VAILFMFDLTRRSTLNSIK-EWYRQARGLNKTAIPILVGTKYDLFIDLP 141 (205)
T ss_pred -------------------------------EEEEEEEecCchHHHHHHH-HHHHHHhccCCccceEEeccchHhhhcCC
Confidence 9999999999999999999 999998888765444678999996422
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+-++ .+ ..++.++++.++ .+.|++|+..+.||.++|.-+..++....
T Consensus 142 ~e~Q~--------~I-~~qar~YAk~mn-AsL~F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 142 PELQE--------TI-SRQARKYAKVMN-ASLFFCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred HHHHH--------HH-HHHHHHHHHHhC-CcEEEeeccccccHHHHHHHHHHHHhCCc
Confidence 11111 12 234788888889 48999999999999999999999887543
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=5.6e-18 Score=153.77 Aligned_cols=160 Identities=17% Similarity=0.135 Sum_probs=100.9
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++..+ ...+..|..+.....+.+++.. +.+|||+|......... +........+...
T Consensus 221 nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~------~~e~~~~~~~~~~-- 290 (472)
T PRK03003 221 NVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQAS------GHEYYASLRTHAA-- 290 (472)
T ss_pred CCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccc------hHHHHHHHHHHHH--
Confidence 7999999999998764 3344455555566667777764 46899999743221100 0000000000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
...+|++++|||++++.++..+ .++..+.. .+.|++||+||+|+...
T Consensus 291 -----------------------------i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 291 -----------------------------IEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDE 337 (472)
T ss_pred -----------------------------HhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCh
Confidence 1123999999999999998887 45555544 37899999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.... ....+...........+++++||++|.||+++|..+.+.+.
T Consensus 338 ~~~~----------~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 338 DRRY----------YLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred hHHH----------HHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2100 01111111111223358999999999999999999988663
No 150
>KOG4423|consensus
Probab=99.75 E-value=2e-19 Score=140.00 Aligned_cols=158 Identities=25% Similarity=0.376 Sum_probs=134.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||+++.+|+...|.-.|..|++.++. +....| ...+.+++||+.||+++-.+...+|+.+
T Consensus 35 ~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea--------------- 99 (229)
T KOG4423|consen 35 GVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA--------------- 99 (229)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC---------------
Confidence 79999999999999998889999988775 334444 4467899999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--C---CCCEEEEEeCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--P---STPIILVGTKL 153 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~---~~piilv~nK~ 153 (228)
.+..+|||+|..-+|+... +|.+.+.... + .+|+++.+|||
T Consensus 100 ---------------------------------~~~~iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankC 145 (229)
T KOG4423|consen 100 ---------------------------------HGAFIVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKC 145 (229)
T ss_pred ---------------------------------cceEEEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchh
Confidence 9999999999999999998 9999887642 1 36889999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
|..... ..........+++++|+..++|+|+|.+.|+.|+...+++.++....+
T Consensus 146 d~e~~a-----------~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 146 DQEKSA-----------KNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQ 199 (229)
T ss_pred ccChHh-----------hhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhccC
Confidence 988642 122245678899999999999999999999999999999999876544
No 151
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.74 E-value=7.7e-17 Score=139.81 Aligned_cols=155 Identities=21% Similarity=0.205 Sum_probs=103.3
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++... ...|..|........+.+++ ...+.+||+||.......
T Consensus 167 naGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~------------------------ 221 (329)
T TIGR02729 167 NAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASE------------------------ 221 (329)
T ss_pred CCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcc------------------------
Confidence 7999999999997653 23343333222223334433 256789999997432110
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhC---CCCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHC---PSTPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~---~~~piilv~nK~ 153 (228)
+.++...|..+.+. ++++++|+|+++. .+++.+. .|..++..+. .+.|++||+||+
T Consensus 222 ----~~gLg~~flrhier-------------ad~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~ 283 (329)
T TIGR02729 222 ----GAGLGHRFLKHIER-------------TRVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKI 283 (329)
T ss_pred ----cccHHHHHHHHHHh-------------hCEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCc
Confidence 11122222222222 2999999999987 6787776 8888887764 368999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
|+..... ..+....+++.++ .+++++||+++.|+++++.++.+.+
T Consensus 284 DL~~~~~-------------~~~~~~~l~~~~~-~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 284 DLLDEEE-------------LAELLKELKKALG-KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCChHH-------------HHHHHHHHHHHcC-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 9976421 1223445555667 5899999999999999999998754
No 152
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.74 E-value=8e-18 Score=135.43 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=96.5
Q ss_pred CCChhhhHHhhhh--CCCCCCC------------Cceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccc
Q psy8274 1 AVGKTCLLISYTT--NAFPGEY------------IPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGL 65 (228)
Q Consensus 1 gvGKTsli~~~~~--~~~~~~~------------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 65 (228)
|||||||+++|+. +.|...+ .++.+.++ .....++...+.+.+|||+|++.|...+..+++.+
T Consensus 12 ~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-- 89 (194)
T cd01891 12 DHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMV-- 89 (194)
T ss_pred CCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhc--
Confidence 7999999999997 5665443 11222222 23344555668899999999998877666666666
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP 145 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p 145 (228)
|++++|||+++.. +.... .++..+.. .++|
T Consensus 90 ----------------------------------------------d~~ilV~d~~~~~-~~~~~-~~~~~~~~--~~~p 119 (194)
T cd01891 90 ----------------------------------------------DGVLLLVDASEGP-MPQTR-FVLKKALE--LGLK 119 (194)
T ss_pred ----------------------------------------------CEEEEEEECCCCc-cHHHH-HHHHHHHH--cCCC
Confidence 9999999998742 22222 33443333 3689
Q ss_pred EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH-------HhCCceEEEecccCCCCHHHH------HHHHHHHh
Q psy8274 146 IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK-------EIGAVKYLECSALTQKGLKTV------FDEAIRAV 212 (228)
Q Consensus 146 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~evSa~~~~~v~~l------f~~l~~~i 212 (228)
+++|+||+|+..... ....++...+.. ..+ .+++++||++|.|+.+. +.+++.++
T Consensus 120 ~iiv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~ 187 (194)
T cd01891 120 PIVVINKIDRPDARP-----------EEVVDEVFDLFIELGATEEQLD-FPVLYASAKNGWASLNLEDPSEDLEPLFDTI 187 (194)
T ss_pred EEEEEECCCCCCCCH-----------HHHHHHHHHHHHHhCCccccCc-cCEEEeehhccccccccccchhhHHHHHHHH
Confidence 999999999965321 011223333332 235 48999999999777433 44555555
Q ss_pred cCC
Q psy8274 213 LCP 215 (228)
Q Consensus 213 ~~~ 215 (228)
...
T Consensus 188 ~~~ 190 (194)
T cd01891 188 IEH 190 (194)
T ss_pred Hhc
Confidence 443
No 153
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.73 E-value=1e-17 Score=123.91 Aligned_cols=106 Identities=31% Similarity=0.522 Sum_probs=76.7
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|.+..+.. .+.++.+..+. ....+......+.+||++|++.+...+...+..+
T Consensus 9 g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~-------------- 74 (119)
T PF08477_consen 9 GVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKA-------------- 74 (119)
T ss_dssp TSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHS--------------
T ss_pred CCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcC--------------
Confidence 799999999999988761 12222233332 2445566766799999999987766555445555
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHH--hhHHHHhhhCCCCCEEEEEeCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRA--KWYPEVRHHCPSTPIILVGTKLD 154 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~--~~~~~l~~~~~~~piilv~nK~D 154 (228)
|++++|||+++++||..+.+ .|+..+.....++|++|||||.|
T Consensus 75 ----------------------------------d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 75 ----------------------------------DAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ----------------------------------CEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ----------------------------------cEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999999999999852 46777776667899999999998
No 154
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.73 E-value=2.4e-17 Score=130.77 Aligned_cols=151 Identities=17% Similarity=0.078 Sum_probs=97.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee--------------eccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF--------------DNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGL 65 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~--------------~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 65 (228)
|+|||||++++++..+...+.++.. .... ....++.....+.+||++|+..+...+...+..+
T Consensus 9 ~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-- 86 (189)
T cd00881 9 DHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVS-- 86 (189)
T ss_pred CCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhc--
Confidence 7999999999998877544322221 0000 0111222246789999999876654444444444
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP 145 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p 145 (228)
|++++|+|++++.+.... .++..+.. .+.|
T Consensus 87 ----------------------------------------------d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~ 116 (189)
T cd00881 87 ----------------------------------------------DGAILVVDANEGVQPQTR--EHLRIARE--GGLP 116 (189)
T ss_pred ----------------------------------------------CEEEEEEECCCCCcHHHH--HHHHHHHH--CCCC
Confidence 999999999987665443 34444444 4799
Q ss_pred EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-------------CCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 146 IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-------------GAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 146 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+++|+||+|+..+.... ....+.....+.. ...+++++||++|.|++++|.++...+
T Consensus 117 i~iv~nK~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 117 IIVAINKIDRVGEEDLE----------EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred eEEEEECCCCcchhcHH----------HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 99999999998632111 0111222222221 126899999999999999999999886
Q ss_pred c
Q psy8274 213 L 213 (228)
Q Consensus 213 ~ 213 (228)
.
T Consensus 187 ~ 187 (189)
T cd00881 187 P 187 (189)
T ss_pred C
Confidence 4
No 155
>KOG0071|consensus
Probab=99.73 E-value=1.9e-17 Score=123.44 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=114.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
++||||++.++..++.. ...||++-+.. .+..+.+.+.+||++|+++.+++|.+||.+.
T Consensus 27 ~aGKTtiLyKLkl~~~~-~~ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gt----------------- 85 (180)
T KOG0071|consen 27 AAGKTTILYKLKLGQSV-TTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT----------------- 85 (180)
T ss_pred cCCceehhhHHhcCCCc-ccccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCC-----------------
Confidence 68999999999987653 56788775554 3344568899999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
.++|||.|..++...+.+++++...|.+.. .+.|+++.+||.|+.+..
T Consensus 86 -------------------------------qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 86 -------------------------------QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred -------------------------------ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 999999999999889888866666666553 468999999999999864
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
...|...-. +... ++... .-..++||.+|+++.+-|.|+.....
T Consensus 135 ~pqei~d~l--------eLe~-~r~~~-W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 135 KPQEIQDKL--------ELER-IRDRN-WYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred CHHHHHHHh--------cccc-ccCCc-cEeeccccccchhHHHHHHHHHhhcc
Confidence 433321111 1111 12222 34778999999999999999987543
No 156
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=5.5e-17 Score=145.54 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=100.8
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||+++|++... .....+|..+.+...+..++. .+.+|||+|...........-.. .......++
T Consensus 182 ~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~---~~~~~~~~~---- 252 (429)
T TIGR03594 182 NVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKY---SVLRTLKAI---- 252 (429)
T ss_pred CCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHH---HHHHHHHHH----
Confidence 7999999999997653 344455555555555666665 67889999987655433210000 000000001
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..+|++++|+|++++.+.... .++..+... +.|+++|+||+|+...
T Consensus 253 ------------------------------~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~ 298 (429)
T TIGR03594 253 ------------------------------ERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKD 298 (429)
T ss_pred ------------------------------HhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCC
Confidence 122999999999998887765 444444443 6899999999999832
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
....+. + ..+........+..+++++||++|.|++++|+++.+...
T Consensus 299 ~~~~~~--------~-~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 299 EKTREE--------F-KKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred HHHHHH--------H-HHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111111 0 011111111223368999999999999999999888654
No 157
>PRK15494 era GTPase Era; Provisional
Probab=99.72 E-value=5.6e-17 Score=141.38 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=96.4
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCcc-cccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQED-YDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+|+|++..+.. ....|..+.....+..++. .+.+|||||... +..+...+.+.+ +.++
T Consensus 62 nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~-------~~~l--- 129 (339)
T PRK15494 62 NSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCA-------WSSL--- 129 (339)
T ss_pred CCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHH-------HHHh---
Confidence 799999999999887642 1112222333344555554 578999999853 222211111100 0000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
..+|++++|+|.++ +|......|+..+... +.|+++|+||+|+.+
T Consensus 130 -------------------------------~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~ 174 (339)
T PRK15494 130 -------------------------------HSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIES 174 (339)
T ss_pred -------------------------------hhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcc
Confidence 11299999999765 5555543566666544 567889999999864
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ...++..++...+ ...++++||++|.|++++|+++...+..
T Consensus 175 ~---------------~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 175 K---------------YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred c---------------cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 2 1234455555443 3579999999999999999999887654
No 158
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.72 E-value=6.6e-17 Score=136.80 Aligned_cols=153 Identities=16% Similarity=0.056 Sum_probs=96.6
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHH-hhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK-EIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (228)
|||||||+|++++..+. .....|+.+........++ ..+.+|||||........ ...|.. -..++
T Consensus 10 nvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l-------~~~~~~~~~~~l--- 77 (270)
T TIGR00436 10 NVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSL-------NRLMMKEARSAI--- 77 (270)
T ss_pred CCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchH-------HHHHHHHHHHHH---
Confidence 79999999999987653 2223344333222222222 468899999975431100 000100 00000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
..+|++++|+|+++..+.. . .++..+... +.|+++|+||+|+..
T Consensus 78 -------------------------------~~aDvvl~VvD~~~~~~~~--~-~i~~~l~~~--~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 78 -------------------------------GGVDLILFVVDSDQWNGDG--E-FVLTKLQNL--KRPVVLTRNKLDNKF 121 (270)
T ss_pred -------------------------------hhCCEEEEEEECCCCCchH--H-HHHHHHHhc--CCCEEEEEECeeCCC
Confidence 1229999999999887765 2 455555543 689999999999975
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
... ..+....++...+..+++++||++|.|++++++.+.+.+..
T Consensus 122 ~~~-------------~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 122 KDK-------------LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred HHH-------------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 321 11233444554554579999999999999999999887643
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=3.6e-17 Score=148.53 Aligned_cols=151 Identities=20% Similarity=0.203 Sum_probs=95.6
Q ss_pred CCChhhhHHhhhhCCCC-CCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|+++.+. ....+.+ .+.....+.+++. .+.+|||+|.+...... .
T Consensus 48 nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~-----------~---------- 104 (472)
T PRK03003 48 NVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGL-----------Q---------- 104 (472)
T ss_pred CCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhH-----------H----------
Confidence 79999999999987642 1222322 3334445556664 47889999976311100 0
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+.+..+.... ...+|++|+|||++++.++... .|...+... +.|+++|+||+|+...
T Consensus 105 ----------~~~~~~~~~~---------~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~~--~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 105 ----------ASVAEQAEVA---------MRTADAVLFVVDATVGATATDE--AVARVLRRS--GKPVILAANKVDDERG 161 (472)
T ss_pred ----------HHHHHHHHHH---------HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCcc
Confidence 0000000000 0112999999999998777543 566666543 7999999999998642
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. .+....+ .+|+...+++||++|.|++++|++++..+..
T Consensus 162 ~---------------~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 162 E---------------ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred c---------------hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 1 1111122 2343356899999999999999999998865
No 160
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.71 E-value=1e-16 Score=144.05 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=100.8
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++.. +...+.+|..+.+...+.+++. .+.+|||+|...+....... + +.. +...
T Consensus 213 nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~----g--i~~---~~~~-- 279 (442)
T TIGR00450 213 NVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERL----G--IEK---SFKA-- 279 (442)
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHH----H--HHH---HHHH--
Confidence 799999999999864 4556666666666777778875 45899999986543211100 0 000 0000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..++|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+...
T Consensus 280 -----------------------------~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 280 -----------------------------IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN 325 (442)
T ss_pred -----------------------------HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc
Confidence 0122999999999999887753 5555443 36899999999999642
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+...+++.++ .+++++||++ .||+++|+.+.+.+..
T Consensus 326 ------------------~~~~~~~~~~-~~~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 326 ------------------SLEFFVSSKV-LNSSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred ------------------chhhhhhhcC-CceEEEEEec-CCHHHHHHHHHHHHHH
Confidence 1123455566 4789999998 6999999999887764
No 161
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.71 E-value=7.9e-17 Score=149.47 Aligned_cols=150 Identities=18% Similarity=0.180 Sum_probs=103.8
Q ss_pred CCChhhhHHhhhhCC-------CCCCCCcee------eeccc-ee--EEE---cCeEEeeeeeeCCCCcccccCCCCccc
Q psy8274 1 AVGKTCLLISYTTNA-------FPGEYIPTV------FDNYS-AN--VMV---DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (228)
Q Consensus 1 gvGKTsli~~~~~~~-------~~~~~~~t~------~~~~~-~~--~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~ 61 (228)
|+|||||+++|+... +...+..+. +.++. .. +.+ ++..+.+.+|||||+.+|...+..++.
T Consensus 13 d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~ 92 (595)
T TIGR01393 13 DHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLA 92 (595)
T ss_pred CCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHH
Confidence 689999999999642 222222221 22221 11 222 566789999999999988766655565
Q ss_pred cccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC
Q psy8274 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~ 141 (228)
.+ |++++|||+++..+..... .|...+.
T Consensus 93 ~a------------------------------------------------D~aILVvDat~g~~~qt~~-~~~~~~~--- 120 (595)
T TIGR01393 93 AC------------------------------------------------EGALLLVDAAQGIEAQTLA-NVYLALE--- 120 (595)
T ss_pred hC------------------------------------------------CEEEEEecCCCCCCHhHHH-HHHHHHH---
Confidence 55 9999999999987777665 5554432
Q ss_pred CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc--eEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 142 PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV--KYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.|+++|+||+|+.+... ......+.+.+++. .++++||++|.|++++|+++.+.+..+.
T Consensus 121 ~~ipiIiViNKiDl~~~~~--------------~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 121 NDLEIIPVINKIDLPSADP--------------ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred cCCCEEEEEECcCCCccCH--------------HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 3689999999999865311 11123444445532 4899999999999999999999886554
No 162
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.70 E-value=4.9e-17 Score=126.95 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=63.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-ceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA-VKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 190 (228)
|++++|+|+++.+++.. .|+..+ ....|+++++||+|+.+ ...+++..++.++++ .++
T Consensus 66 d~il~v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~---------------~~~~~~~~~~~~~~~~~p~ 124 (158)
T PRK15467 66 DMLIYVHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD---------------ADVAATRKLLLETGFEEPI 124 (158)
T ss_pred CEEEEEEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc---------------ccHHHHHHHHHHcCCCCCE
Confidence 99999999999887633 333332 23679999999999864 233456677777774 489
Q ss_pred EEecccCCCCHHHHHHHHHHHhcC
Q psy8274 191 LECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+++||++|+|++++|+.+.+.+.+
T Consensus 125 ~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 125 FELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred EEEECCCccCHHHHHHHHHHhchh
Confidence 999999999999999999876654
No 163
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.70 E-value=3.3e-16 Score=144.85 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=95.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++|.+..+...+.+.+.... ...+.+++. ..+.+|||||++.|..++...+..+
T Consensus 97 d~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~a---------------- 159 (587)
T TIGR00487 97 DHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVT---------------- 159 (587)
T ss_pred CCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccC----------------
Confidence 6899999999998888665554443222 233444332 2678999999999887766555555
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++++|+|+++. .+++.+ ..... .++|+++++||+|+.
T Consensus 160 --------------------------------DiaILVVda~dgv~~qT~e~i-----~~~~~--~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 160 --------------------------------DIVVLVVAADDGVMPQTIEAI-----SHAKA--ANVPIIVAINKIDKP 200 (587)
T ss_pred --------------------------------CEEEEEEECCCCCCHhHHHHH-----HHHHH--cCCCEEEEEECcccc
Confidence 999999999874 333322 12222 368999999999996
Q ss_pred CchHHHHHHhhccCccccHHHHHHHH-------HHhC-CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMA-------KEIG-AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~-~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.... ++..... ..++ -.+++++||++|.|++++|+++...
T Consensus 201 ~~~~---------------e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 201 EANP---------------DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred cCCH---------------HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhhh
Confidence 4211 1111221 2232 1479999999999999999998753
No 164
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.70 E-value=1.2e-16 Score=139.76 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=95.4
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|+|++..+. .++..+..+.....+.+++. ..+.+|||+|...- +.... .+
T Consensus 199 NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~--l~~~l--------ie---------- 257 (351)
T TIGR03156 199 NAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRD--LPHEL--------VA---------- 257 (351)
T ss_pred CCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCccccc--CCHHH--------HH----------
Confidence 79999999999987643 23333434444555666332 46889999997321 00000 00
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
.|...... ..++|++++|+|++++.+++.+. .|...+.... .+.|+++|+||+|+...
T Consensus 258 ----------~f~~tle~----------~~~ADlil~VvD~s~~~~~~~~~-~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 258 ----------AFRATLEE----------VREADLLLHVVDASDPDREEQIE-AVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred ----------HHHHHHHH----------HHhCCEEEEEEECCCCchHHHHH-HHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 00000000 01129999999999999888775 6666666543 36899999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.. +. ... . +..+++++||++|.|++++++++...
T Consensus 317 ~~------------v~-----~~~-~-~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 317 PR------------IE-----RLE-E-GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred Hh------------HH-----HHH-h-CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 21 11 111 1 11368999999999999999998764
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=1.2e-15 Score=135.99 Aligned_cols=155 Identities=22% Similarity=0.227 Sum_probs=104.4
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++.... ..|..|........+.+++ ...+.+||+||...-.+
T Consensus 168 NaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~------------------------- 221 (424)
T PRK12297 168 NVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGAS------------------------- 221 (424)
T ss_pred CCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCccccc-------------------------
Confidence 79999999999976532 2343333222222333331 24688999999642111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhCC---CCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHCP---STPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~~---~~piilv~nK~ 153 (228)
.+.++...|..+.+. |+++++|+|+++. .+++.+. .|..++..+.+ ..|++||+||+
T Consensus 222 ---~~~gLg~~fLrhier-------------~~llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 222 ---EGVGLGHQFLRHIER-------------TRVIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred ---ccchHHHHHHHHHhh-------------CCEEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCC
Confidence 122233333333332 2999999999865 6777776 88888887753 68999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|+... .+....+.+.++ .+++++||+++.|++++++++.+.+...
T Consensus 285 DL~~~----------------~e~l~~l~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 285 DLPEA----------------EENLEEFKEKLG-PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcCC----------------HHHHHHHHHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 98532 123455666666 5899999999999999999998877543
No 166
>KOG0072|consensus
Probab=99.69 E-value=7e-17 Score=120.98 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=113.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||++..++.-+... .+.||++.... .+..+...+++||.+|+...+++|++||.+.
T Consensus 28 GaGkttIlyrlqvgevv-ttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt----------------- 86 (182)
T KOG0072|consen 28 GAGKTTILYRLQVGEVV-TTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADT----------------- 86 (182)
T ss_pred CCCeeEEEEEcccCccc-ccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhccc-----------------
Confidence 67888888887765543 56777765444 3334667899999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
|++|+|.|.+|.+........++..+.+.. .+..++|++||.|.....
T Consensus 87 -------------------------------~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~ 135 (182)
T KOG0072|consen 87 -------------------------------DAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL 135 (182)
T ss_pred -------------------------------ceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh
Confidence 999999999998887776656666776654 456788999999988764
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
...|....- ...++.+ ..+.++++||.+|+|++.+++|+.+.+..
T Consensus 136 t~~E~~~~L--------~l~~Lk~--r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 136 TRSEVLKML--------GLQKLKD--RIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hHHHHHHHh--------ChHHHhh--heeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 433332221 0111111 22689999999999999999999997764
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.69 E-value=2e-16 Score=142.60 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=98.1
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++... ...+..|..+.+...+.+++. .+.+|||+|...+....... .+...+..
T Consensus 225 nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~------gi~~~~~~----- 291 (449)
T PRK05291 225 NVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKI------GIERSREA----- 291 (449)
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHH------HHHHHHHH-----
Confidence 7999999999998763 445555556666666777774 57899999986432110000 00000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..++|++++|||++++.++.... .|.. ..+.|+++|+||+|+...
T Consensus 292 -----------------------------~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 292 -----------------------------IEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred -----------------------------HHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhcccc
Confidence 01129999999999998887653 3332 446899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. .. ...+ .+++++||++|.|++++++++...+..
T Consensus 337 ~~------------~~--------~~~~-~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 337 ID------------LE--------EENG-KPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ch------------hh--------hccC-CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 21 11 2233 479999999999999999999998753
No 168
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=3.7e-16 Score=140.53 Aligned_cols=148 Identities=20% Similarity=0.172 Sum_probs=95.1
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHh-hcchhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKE-IGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 77 (228)
|||||||+++|++... ..++.++..+.....+.+++ ..+.+|||+|...... ... ..+... ..++
T Consensus 11 ~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~---~~~----~~~~~~~~~~~--- 78 (435)
T PRK00093 11 NVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDD---GFE----KQIREQAELAI--- 78 (435)
T ss_pred CCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcch---hHH----HHHHHHHHHHH---
Confidence 7999999999998763 34444444555555666677 6789999999875211 000 000000 0000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
..+|++++|+|++++.+.... .+...++.. +.|+++|+||+|+..
T Consensus 79 -------------------------------~~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~ 123 (435)
T PRK00093 79 -------------------------------EEADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPD 123 (435)
T ss_pred -------------------------------HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCcc
Confidence 112999999999886554432 233334443 789999999999754
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.. .....+ ..+|+..++++||++|.|++++|+++....
T Consensus 124 ~~----------------~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 124 EE----------------ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred ch----------------hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 21 111222 345655689999999999999999998843
No 169
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.68 E-value=7e-16 Score=143.17 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=100.0
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|++++..+. +++..+..+.....+..++. .+.+||+||+..+..... ...+......
T Consensus 4 NvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~------~e~v~~~~l~------ 69 (591)
T TIGR00437 4 NVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSL------EEEVARDYLL------ 69 (591)
T ss_pred CCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccch------HHHHHHHHHh------
Confidence 79999999999987763 33333334444455666664 478999999987654321 0011110000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
...+|++++|+|.++.+.-. .+...+.+ .+.|+++|+||+|+.+.
T Consensus 70 ----------------------------~~~aDvvI~VvDat~ler~l----~l~~ql~~--~~~PiIIVlNK~Dl~~~- 114 (591)
T TIGR00437 70 ----------------------------NEKPDLVVNVVDASNLERNL----YLTLQLLE--LGIPMILALNLVDEAEK- 114 (591)
T ss_pred ----------------------------hcCCCEEEEEecCCcchhhH----HHHHHHHh--cCCCEEEEEehhHHHHh-
Confidence 01129999999998744321 22223332 36999999999998653
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.+. .+...+.+.+| .+++++||++|.|++++|+++.+..
T Consensus 115 -----------~~i~-~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 115 -----------KGIR-IDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred -----------CCCh-hhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 2233 34677888889 5999999999999999999998764
No 170
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.68 E-value=1.8e-15 Score=117.85 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=92.8
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||++++++..+. .....+........+..++. .+.+||++|........... . .+. ...+....
T Consensus 12 ~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~-e----~~~-~~~~~~~~- 82 (174)
T cd01895 12 NVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGI-E----KYS-VLRTLKAI- 82 (174)
T ss_pred CCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccH-H----HHH-HHHHHHHH-
Confidence 79999999999987642 22233333333344555654 46789999986542211100 0 000 00000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..+|++++|+|++++.+.... .++..+... +.|+++++||+|+...
T Consensus 83 ------------------------------~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 83 ------------------------------ERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEK 128 (174)
T ss_pred ------------------------------hhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCc
Confidence 112999999999998887654 344343333 5899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHH-HHHHHh---CCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGL-SMAKEI---GAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.. ...++.. .+.+.+ +..+++++||+++.|++++++.+.+.
T Consensus 129 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 129 DS------------KTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cH------------HHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 21 1111111 111222 23589999999999999999998763
No 171
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.67 E-value=3.5e-16 Score=125.68 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=58.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH-------H
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK-------E 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~ 184 (228)
|++++|+|+++..+..... .+. .... .+.|+++|+||+|+....... ...++...... .
T Consensus 93 d~vi~VvD~~~~~~~~~~~-~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~~----------~~~~~~~~~l~~~~~~~~~ 158 (192)
T cd01889 93 DLMLLVVDATKGIQTQTAE-CLV-IGEI--LCKKLIVVLNKIDLIPEEERE----------RKIEKMKKKLQKTLEKTRF 158 (192)
T ss_pred CEEEEEEECCCCccHHHHH-HHH-HHHH--cCCCEEEEEECcccCCHHHHH----------HHHHHHHHHHHHHHHhcCc
Confidence 9999999998865544432 222 1122 257999999999997532211 11112221111 1
Q ss_pred hCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 185 IGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 185 ~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+ .+++++||++|.|++++++.+..+|.-+
T Consensus 159 ~~-~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 159 KN-SPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CC-CCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 23 5899999999999999999999988754
No 172
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.67 E-value=1e-15 Score=117.62 Aligned_cols=144 Identities=22% Similarity=0.242 Sum_probs=93.0
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||++++....+ ...+.++..+.+...+..++ ..+.+|||+|...+...... ..+....
T Consensus 11 ~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~------~~~~~~~------- 75 (157)
T cd04164 11 NVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEK------IGIERAR------- 75 (157)
T ss_pred CCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHH------HHHHHHH-------
Confidence 7999999999998764 22333333333334444444 56789999997654321000 0000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.. ..++|++++|+|++++.+..... .+.. ....|+++|+||+|+...
T Consensus 76 ------------------~~---------~~~~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 76 ------------------EA---------IEEADLVLFVIDASRGLDEEDLE-ILEL-----PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred ------------------HH---------HhhCCEEEEEEECCCCCCHHHHH-HHHh-----hcCCCEEEEEEchhcCCc
Confidence 00 01229999999999988887764 2221 346999999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.. . .....+ .+++++||+++.|+++++.++...+
T Consensus 123 ~~------------~-------~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 123 SE------------L-------LSLLAG-KPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred cc------------c-------ccccCC-CceEEEECCCCCCHHHHHHHHHHhh
Confidence 21 1 223334 6899999999999999999988754
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.67 E-value=5.4e-16 Score=124.32 Aligned_cols=161 Identities=15% Similarity=0.064 Sum_probs=93.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++++++.+...+.++.+.+...... .....+.+|||+|..... .+. .+.+.+..
T Consensus 34 ~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~l~l~DtpG~~~~~--~~~-------~~~~~~~~------- 95 (196)
T PRK00454 34 NVGKSSLINALTNRKNLARTSKTPGRTQLINFF--EVNDKLRLVDLPGYGYAK--VSK-------EEKEKWQK------- 95 (196)
T ss_pred CCCHHHHHHHHhCCCCcccccCCCCceeEEEEE--ecCCeEEEeCCCCCCCcC--CCc-------hHHHHHHH-------
Confidence 799999999999887665666555433222111 112578999999964311 000 00000000
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
.....+.. ...++++++|+|.+++.+.... .+...+.. .+.|+++++||+|+....+
T Consensus 96 -------------~~~~~~~~------~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~ 152 (196)
T PRK00454 96 -------------LIEEYLRT------RENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGE 152 (196)
T ss_pred -------------HHHHHHHh------CccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHH
Confidence 00000000 0112788999998876655432 22333332 2689999999999976432
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
. ....++......... .+++++||+++.|++++|+.+...+.
T Consensus 153 ~----------~~~~~~i~~~l~~~~-~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 153 R----------KKQLKKVRKALKFGD-DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred H----------HHHHHHHHHHHHhcC-CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 1 111222333443334 58999999999999999999887664
No 174
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=1.4e-15 Score=144.24 Aligned_cols=161 Identities=19% Similarity=0.138 Sum_probs=101.3
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++++++... ...+.+|..+.+...+.+++.. +.+|||+|......... +........+..
T Consensus 460 nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~------~~e~~~~~r~~~--- 528 (712)
T PRK09518 460 NVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLT------GAEYYSSLRTQA--- 528 (712)
T ss_pred CCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccch------hHHHHHHHHHHH---
Confidence 7999999999998864 4556666666666666777764 55899999653211100 000000000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
....+|++++|+|++++.++.... ++..+... +.|++||+||+|+.+.
T Consensus 529 ----------------------------~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 529 ----------------------------AIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDE 576 (712)
T ss_pred ----------------------------HhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCCh
Confidence 012239999999999998888763 44444443 6899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
... + .-..+...........+.+++||++|.|++++|+.+.+...+
T Consensus 577 ~~~-~---------~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 577 FRR-Q---------RLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred hHH-H---------HHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 210 0 000011111111233567999999999999999999887754
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.66 E-value=6.6e-16 Score=143.13 Aligned_cols=147 Identities=20% Similarity=0.136 Sum_probs=100.2
Q ss_pred CCChhhhHHhhhh---CCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhh
Q psy8274 1 AVGKTCLLISYTT---NAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKY 76 (228)
Q Consensus 1 gvGKTsli~~~~~---~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (228)
|+|||||+++|++ +.+.+++.+++.... ...+.+++ ..+.+||+||++.|.......+.++
T Consensus 10 d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~a------------- 74 (581)
T TIGR00475 10 DHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGI------------- 74 (581)
T ss_pred CCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccC-------------
Confidence 6899999999985 445545555543222 23345555 7889999999988765444444444
Q ss_pred hhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCC-EEEEEeC
Q psy8274 77 LECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTP-IILVGTK 152 (228)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK 152 (228)
|++++|+|+++ +.+++.+. .+... ++| +++|+||
T Consensus 75 -----------------------------------D~aILVVDa~~G~~~qT~ehl~-----il~~l--gi~~iIVVlNK 112 (581)
T TIGR00475 75 -----------------------------------DAALLVVDADEGVMTQTGEHLA-----VLDLL--GIPHTIVVITK 112 (581)
T ss_pred -----------------------------------CEEEEEEECCCCCcHHHHHHHH-----HHHHc--CCCeEEEEEEC
Confidence 99999999998 55555542 22222 577 9999999
Q ss_pred CCCCCchHHHHHHhhccCccccHHHHHHHHHHhC---CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG---AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 153 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+|+.+.... ....++...+.+..+ ..+++++||++|.|+++++..+...+..
T Consensus 113 ~Dlv~~~~~----------~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 113 ADRVNEEEI----------KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCHHHH----------HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 999864321 112234455555543 2589999999999999999988775543
No 176
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.66 E-value=1.1e-15 Score=118.05 Aligned_cols=153 Identities=19% Similarity=0.162 Sum_probs=90.1
Q ss_pred CCChhhhHHhhhhCCCCCCC--CceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEY--IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||++++++..+.... ..+... ............+.+||++|...........+.
T Consensus 13 g~GKttl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~----------------- 73 (168)
T cd04163 13 NVGKSTLLNALVGQKISIVSPKPQTTRN--RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMV----------------- 73 (168)
T ss_pred CCCHHHHHHHHhCCceEeccCCCCceec--eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHH-----------------
Confidence 79999999999977542211 112111 111122333467889999997643321111000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
...... ...+|++++|+|++++.+.... .+...+... +.|+++|+||+|+...
T Consensus 74 --------------~~~~~~---------~~~~d~i~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~ 126 (168)
T cd04163 74 --------------KAAWSA---------LKDVDLVLFVVDASEPIGEGDE--FILELLKKS--KTPVILVLNKIDLVKD 126 (168)
T ss_pred --------------HHHHHH---------HHhCCEEEEEEECCCccCchHH--HHHHHHHHh--CCCEEEEEEchhcccc
Confidence 000000 0112999999999987322211 333444443 6899999999999843
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.. ...+....+....+..+++++|++++.|++++++++.+.
T Consensus 127 ~~------------~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 127 KE------------DLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HH------------HHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 22 112223334444444689999999999999999998764
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.66 E-value=1.4e-15 Score=144.09 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=95.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++|....+.....+.+.... ...+.+++ ..+.+|||||++.|..++...+..+
T Consensus 300 d~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~a---------------- 361 (787)
T PRK05306 300 DHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVT---------------- 361 (787)
T ss_pred CCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhC----------------
Confidence 6899999999998777654444332222 23445555 5678999999998876665444444
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++|+|||+++. .++..+. .... .++|+||++||+|+.
T Consensus 362 --------------------------------DiaILVVdAddGv~~qT~e~i~-----~a~~--~~vPiIVviNKiDl~ 402 (787)
T PRK05306 362 --------------------------------DIVVLVVAADDGVMPQTIEAIN-----HAKA--AGVPIIVAINKIDKP 402 (787)
T ss_pred --------------------------------CEEEEEEECCCCCCHhHHHHHH-----HHHh--cCCcEEEEEECcccc
Confidence 999999999884 3443321 2222 369999999999996
Q ss_pred CchH--HHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 157 DDKE--TIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 157 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.... +...+. +...++..+| ..+++++||++|.||+++|+++...
T Consensus 403 ~a~~e~V~~eL~----------~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 403 GANPDRVKQELS----------EYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred ccCHHHHHHHHH----------HhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 5321 111110 0111233343 2589999999999999999998753
No 178
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=4e-15 Score=134.48 Aligned_cols=157 Identities=19% Similarity=0.186 Sum_probs=99.3
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++... ..+|..|........+.+++ ..+.+||+||...-.
T Consensus 169 NAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliega-------------------------- 220 (500)
T PRK12296 169 SAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGA-------------------------- 220 (500)
T ss_pred CCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCcccc--------------------------
Confidence 7999999999997643 23444444333333444444 568899999963211
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh----hhHHHHHHhhHHHHhhhC------------CC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP----ASFENVRAKWYPEVRHHC------------PS 143 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~----~s~~~~~~~~~~~l~~~~------------~~ 143 (228)
..+.++...|..+.+ +|+++++|+|+++. ..+..+. .|..+|..+. ..
T Consensus 221 --s~g~gLg~~fLrhie-------------radvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 221 --SEGKGLGLDFLRHIE-------------RCAVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred --chhhHHHHHHHHHHH-------------hcCEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcC
Confidence 111222223333322 23999999999863 3455554 5555555443 25
Q ss_pred CCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 144 TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.|++||+||+|+.+..... +.........+ .+++++||+++.|+++++.++.+.+...
T Consensus 285 kP~IVVlNKiDL~da~el~-------------e~l~~~l~~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 285 RPRLVVLNKIDVPDARELA-------------EFVRPELEARG-WPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCEEEEEECccchhhHHHH-------------HHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999997542211 11122233446 5899999999999999999999887553
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.65 E-value=1.3e-15 Score=136.77 Aligned_cols=151 Identities=20% Similarity=0.212 Sum_probs=98.5
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++... ..++.++..+.....+..++. .+.+|||||......-
T Consensus 9 nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~----------------------- 63 (429)
T TIGR03594 9 NVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDG----------------------- 63 (429)
T ss_pred CCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchh-----------------------
Confidence 7999999999998763 334444445555556666664 5889999997422100
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+.+.+..+....+ ..+|++++|+|.+++.+.... .+...+++. +.|+++|+||+|+...
T Consensus 64 --------~~~~~~~~~~~~~---------~~ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 64 --------LDKQIREQAEIAI---------EEADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKE 122 (429)
T ss_pred --------HHHHHHHHHHHHH---------hhCCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcc
Confidence 0000111111100 122999999999886555443 344455544 6899999999998754
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. .. ... ...+|+.+++++||++|.|++++++++...+..
T Consensus 123 ~-------------~~---~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 123 D-------------AV---AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred c-------------cc---HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 2 11 111 235676689999999999999999999988754
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.64 E-value=1e-15 Score=143.87 Aligned_cols=147 Identities=16% Similarity=0.235 Sum_probs=97.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeee---ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFD---NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|+|||||+++|....+.....+.+.. .+...+..++....+.+|||||++.|..++...+..+
T Consensus 254 dvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a-------------- 319 (742)
T CHL00189 254 DHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT-------------- 319 (742)
T ss_pred CCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC--------------
Confidence 69999999999988776544433321 2223333445567899999999988876665555555
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHCPSTPIILVGTKLD 154 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~~~~piilv~nK~D 154 (228)
|++++|+|+++. .+++.+. .+.. .++|++||+||+|
T Consensus 320 ----------------------------------DiaILVVDA~dGv~~QT~E~I~-----~~k~--~~iPiIVViNKiD 358 (742)
T CHL00189 320 ----------------------------------DIAILIIAADDGVKPQTIEAIN-----YIQA--ANVPIIVAINKID 358 (742)
T ss_pred ----------------------------------CEEEEEEECcCCCChhhHHHHH-----HHHh--cCceEEEEEECCC
Confidence 999999999874 4444332 2222 3689999999999
Q ss_pred CCCchH--HHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 155 LRDDKE--TIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 155 l~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+..... ..+.+... ..+...+| ..+++++||++|.|++++|+.+....
T Consensus 359 l~~~~~e~v~~eL~~~----------~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 359 KANANTERIKQQLAKY----------NLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ccccCHHHHHHHHHHh----------ccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 975321 00100000 01122333 35899999999999999999998754
No 181
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.64 E-value=5.9e-15 Score=112.48 Aligned_cols=155 Identities=23% Similarity=0.221 Sum_probs=94.4
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||++++++..+. ....++...........+. ...+.+||++|...+......... .+.
T Consensus 6 gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~-----~~~--------- 70 (163)
T cd00880 6 NAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREE-----LAR--------- 70 (163)
T ss_pred CCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHH-----HHH---------
Confidence 79999999999976543 1222333333333333221 467899999998765543321000 000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.. ...+|++++|+|.++..+..... +...... .+.|+++|+||+|+...
T Consensus 71 --------------~~-------------~~~~d~il~v~~~~~~~~~~~~~--~~~~~~~--~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 71 --------------RV-------------LERADLILFVVDADLRADEEEEK--LLELLRE--RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred --------------HH-------------HHhCCEEEEEEeCCCCCCHHHHH--HHHHHHh--cCCeEEEEEEccccCCh
Confidence 00 01129999999999988877653 2333322 37899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
........ ..........+ .+++++||+++.|+++++.++.+.
T Consensus 120 ~~~~~~~~---------~~~~~~~~~~~-~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 120 EEEEELLE---------LRLLILLLLLG-LPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred hhHHHHHH---------HHHhhcccccC-CceEEEeeeccCCHHHHHHHHHhh
Confidence 33111100 01111222223 689999999999999999999875
No 182
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.64 E-value=6.4e-16 Score=122.80 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=86.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecccee-EEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||++++.+..+...+.++.+.+.... +..++ .+.+||+||...-... . .....
T Consensus 28 ~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~-~--------~~~~~--------- 86 (179)
T TIGR03598 28 NVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVS-K--------EEKEK--------- 86 (179)
T ss_pred CCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCC-h--------hHHHH---------
Confidence 7999999999998765545445544333211 22333 5889999996432100 0 00000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+.......+.. ...++++++|+|++++-+.... .++..+... ..|+++|+||+|+....
T Consensus 87 -----------~~~~~~~~l~~------~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~ 145 (179)
T TIGR03598 87 -----------WQKLIEEYLEK------RENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKS 145 (179)
T ss_pred -----------HHHHHHHHHHh------ChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHH
Confidence 00000000000 0112899999999886665554 334444433 68999999999997643
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCC-ceEEEecccCCCCHH
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGA-VKYLECSALTQKGLK 202 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~evSa~~~~~v~ 202 (228)
+. ....++....+...+. .+++++||++|+|++
T Consensus 146 ~~----------~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 146 EL----------NKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HH----------HHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 21 1223334445554431 379999999999974
No 183
>PRK00089 era GTPase Era; Reviewed
Probab=99.64 E-value=3.1e-15 Score=127.78 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=93.7
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|++++..+.. ....|........... ....+.+|||||........ ...|
T Consensus 15 n~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l-------~~~~----------- 74 (292)
T PRK00089 15 NVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRAL-------NRAM----------- 74 (292)
T ss_pred CCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHH-------HHHH-----------
Confidence 799999999999876532 1222222222211221 23678999999975432110 0000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
...+...+ ..+|++++|+|+++..+- ....++..+.. .+.|+++|+||+|+...
T Consensus 75 -------------~~~~~~~~---------~~~D~il~vvd~~~~~~~--~~~~i~~~l~~--~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 75 -------------NKAAWSSL---------KDVDLVLFVVDADEKIGP--GDEFILEKLKK--VKTPVILVLNKIDLVKD 128 (292)
T ss_pred -------------HHHHHHHH---------hcCCEEEEEEeCCCCCCh--hHHHHHHHHhh--cCCCEEEEEECCcCCCC
Confidence 00000000 123999999999883222 11133334432 26899999999999843
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. ........+.+.++..+++++||+++.|++++++++...+..
T Consensus 129 ~~------------~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 129 KE------------ELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred HH------------HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 22 122234455555565689999999999999999999988754
No 184
>PRK11058 GTPase HflX; Provisional
Probab=99.63 E-value=2.9e-15 Score=133.99 Aligned_cols=153 Identities=18% Similarity=0.119 Sum_probs=94.8
Q ss_pred CCChhhhHHhhhhCCCCC-CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccc--cCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD--RLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+|++++..+.. +...+..+.....+.+.+. ..+.+|||+|..... .++..+
T Consensus 207 NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f------------------ 267 (426)
T PRK11058 207 NAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAF------------------ 267 (426)
T ss_pred CCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHH------------------
Confidence 799999999999866432 2222333333344555442 246789999973321 111100
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLR 156 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~ 156 (228)
....+. ...+|++++|+|++++.++..+. .|...+.... .+.|+++|+||+|+.
T Consensus 268 --------------~~tl~~----------~~~ADlIL~VvDaS~~~~~e~l~-~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 268 --------------KATLQE----------TRQATLLLHVVDAADVRVQENIE-AVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred --------------HHHHHH----------hhcCCEEEEEEeCCCccHHHHHH-HHHHHHHHhccCCCCEEEEEEcccCC
Confidence 000000 01229999999999998888774 4444444432 368999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.... ...+. ...+...++++||++|.|++++++++...+..
T Consensus 323 ~~~~-------------~~~~~----~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 323 DDFE-------------PRIDR----DEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred Cchh-------------HHHHH----HhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 5311 00011 12343235889999999999999999998753
No 185
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.63 E-value=1.6e-15 Score=117.67 Aligned_cols=146 Identities=19% Similarity=0.230 Sum_probs=92.4
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|++++... .+++..+..+.....+.+++ ..+.++|+||-....+... ..+++...-
T Consensus 10 NvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~------ee~v~~~~l------- 74 (156)
T PF02421_consen 10 NVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSE------EERVARDYL------- 74 (156)
T ss_dssp TSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSH------HHHHHHHHH-------
T ss_pred CCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCc------HHHHHHHHH-------
Confidence 7999999999998764 23444444444455666666 5678889999754432211 122222111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+...| |++++|.|.++.+.-. .+...+... +.|+++|.||+|+....
T Consensus 75 -------------------~~~~~--------D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 75 -------------------LSEKP--------DLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVVLNKMDEAERK 121 (156)
T ss_dssp -------------------HHTSS--------SEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEEEETHHHHHHT
T ss_pred -------------------hhcCC--------CEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEEEeCHHHHHHc
Confidence 11112 9999999999744322 233344444 79999999999988652
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHH
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEA 208 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l 208 (228)
.+.. +...+.+.+| .|++++||+++.|++++++.+
T Consensus 122 ------------g~~i-d~~~Ls~~Lg-~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 122 ------------GIEI-DAEKLSERLG-VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ------------TEEE--HHHHHHHHT-S-EEEEBTTTTBTHHHHHHHH
T ss_pred ------------CCEE-CHHHHHHHhC-CCEEEEEeCCCcCHHHHHhhC
Confidence 2322 3667888899 599999999999999999865
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=6.2e-15 Score=132.59 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=97.3
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||++++++.. ......+|..+.....+..++. .+.+|||+|...........-. ........++
T Consensus 183 n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~---~~~~~~~~~~---- 253 (435)
T PRK00093 183 NVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEK---YSVIRTLKAI---- 253 (435)
T ss_pred CCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHH---HHHHHHHHHH----
Confidence 799999999999654 2333444545544444555554 4678999998654433210000 0000000011
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.++|++++|+|++++.+.... .+...+... ..|+++|+||+|+.+.
T Consensus 254 ------------------------------~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 254 ------------------------------ERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDE 299 (435)
T ss_pred ------------------------------HHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCH
Confidence 112999999999998887765 344444443 6899999999999853
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. .+. +. .+........+..+++++||++|.|++++|+.+.+...
T Consensus 300 ~~-~~~--------~~-~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 300 KT-MEE--------FK-KELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred HH-HHH--------HH-HHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 21 110 11 11111122233468999999999999999999876443
No 187
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.63 E-value=2.3e-15 Score=122.19 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=76.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+...+.++............+....+.+||+||+..++..+..+++.+
T Consensus 10 ~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~----------------- 72 (203)
T cd04105 10 DSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNS----------------- 72 (203)
T ss_pred CCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhcc-----------------
Confidence 799999999999998877665553322221222224456799999999988754443333221
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh-hhHHHHHHhhHHHHhh---hCCCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP-ASFENVRAKWYPEVRH---HCPSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~-~s~~~~~~~~~~~l~~---~~~~~piilv~nK~Dl~ 156 (228)
.+++|+|+|+++. +++..+.+.++..+.. +...+|++||+||+|+.
T Consensus 73 ------------------------------~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~ 122 (203)
T cd04105 73 ------------------------------AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF 122 (203)
T ss_pred ------------------------------CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc
Confidence 1999999999997 7788776333333332 23579999999999987
Q ss_pred Cc
Q psy8274 157 DD 158 (228)
Q Consensus 157 ~~ 158 (228)
..
T Consensus 123 ~a 124 (203)
T cd04105 123 TA 124 (203)
T ss_pred cc
Confidence 54
No 188
>KOG0076|consensus
Probab=99.61 E-value=8.3e-16 Score=118.61 Aligned_cols=151 Identities=24% Similarity=0.309 Sum_probs=108.4
Q ss_pred CCChhhhHHhhhhC---CCCC----CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcc
Q psy8274 1 AVGKTCLLISYTTN---AFPG----EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGA 73 (228)
Q Consensus 1 gvGKTsli~~~~~~---~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (228)
|+|||||+-+..+. .+.+ .-.+|++-. ..++.++ ...+.+||.+||+..+++|..||..+
T Consensus 27 nAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn-ig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~---------- 93 (197)
T KOG0076|consen 27 NAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN-IGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWLA---------- 93 (197)
T ss_pred cCCchhHHHHHHHHHHhhhcCCCHHHeeccccee-ecceeec--cceeEEEEcCChHHHHHHHHHHHHHh----------
Confidence 68999999876532 1211 223344322 2334445 35789999999999999999999998
Q ss_pred hhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh-h-CCCCCEEEEEe
Q psy8274 74 VKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH-H-CPSTPIILVGT 151 (228)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~-~-~~~~piilv~n 151 (228)
+++|+++|.+|++.|+... .-++.+.. . -..+|+++.+|
T Consensus 94 --------------------------------------H~ii~viDa~~~eR~~~~~-t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 94 --------------------------------------HGIIYVIDATDRERFEESK-TAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred --------------------------------------ceeEEeecCCCHHHHHHHH-HHHHHHHHHHHhcCCchhhhcc
Confidence 9999999999999999887 43444333 2 25799999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHH---hCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE---IGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|.|+.+..+..+.- .....+.. .. .++.+|||.+|+||++..+|+...+.+.
T Consensus 135 kqd~q~~~~~~El~-----------~~~~~~e~~~~rd-~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 135 KQDLQNAMEAAELD-----------GVFGLAELIPRRD-NPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhhhhhhHHHHH-----------HHhhhhhhcCCcc-CccccchhhhcccHHHHHHHHHHHHhhc
Confidence 99999874432220 01111122 23 4799999999999999999999998877
No 189
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.60 E-value=6e-15 Score=119.71 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=56.7
Q ss_pred ceEEEEEecCCh----hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVNP----ASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~~----~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|++++|+|++++ .++..+. .+... ...|+++|+||+|+....... ...++...+...+
T Consensus 108 D~~llVvd~~~~~~~~~t~~~l~-----~~~~~-~~~~iiivvNK~Dl~~~~~~~----------~~~~~i~~~~~~~~~ 171 (203)
T cd01888 108 DGALLLIAANEPCPQPQTSEHLA-----ALEIM-GLKHIIIVQNKIDLVKEEQAL----------ENYEQIKKFVKGTIA 171 (203)
T ss_pred CEEEEEEECCCCCCCcchHHHHH-----HHHHc-CCCcEEEEEEchhccCHHHHH----------HHHHHHHHHHhcccc
Confidence 999999999873 3333332 22222 235799999999997642211 1112333333332
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
...+++++||++|.|++++|+.+...+..
T Consensus 172 ~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 172 ENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred CCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12579999999999999999999887654
No 190
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.60 E-value=6.5e-15 Score=136.18 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=93.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCc----eeeeccc-ee------------EEEcCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIP----TVFDNYS-AN------------VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~----t~~~~~~-~~------------~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||+++|.+..+...... +++..+. .. ..++.....+.+|||||++.|..++...+..+
T Consensus 14 d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~a 93 (590)
T TIGR00491 14 DHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALA 93 (590)
T ss_pred CCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhC
Confidence 6999999999998877543322 2222111 00 01111112488999999998887776666666
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHH 140 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~ 140 (228)
|++++|||+++ +.+++.+. .+..
T Consensus 94 ------------------------------------------------D~~IlVvD~~~g~~~qt~e~i~-----~l~~- 119 (590)
T TIGR00491 94 ------------------------------------------------DLAILIVDINEGFKPQTQEALN-----ILRM- 119 (590)
T ss_pred ------------------------------------------------CEEEEEEECCcCCCHhHHHHHH-----HHHH-
Confidence 99999999997 55555442 2222
Q ss_pred CCCCCEEEEEeCCCCCCchH------HHH-----------HHhhc--------cCccccHHHHHHHHHHhCCceEEEecc
Q psy8274 141 CPSTPIILVGTKLDLRDDKE------TIE-----------KLKEK--------KLAPITYPQGLSMAKEIGAVKYLECSA 195 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~~~------~~~-----------~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~evSa 195 (228)
.++|+++++||+|+...-. ..+ .+... ....+..+.........+..+++++||
T Consensus 120 -~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA 198 (590)
T TIGR00491 120 -YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISA 198 (590)
T ss_pred -cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeec
Confidence 2689999999999974210 000 00000 000011111111111123468999999
Q ss_pred cCCCCHHHHHHHHHH
Q psy8274 196 LTQKGLKTVFDEAIR 210 (228)
Q Consensus 196 ~~~~~v~~lf~~l~~ 210 (228)
++|+|+++++.++..
T Consensus 199 ~tGeGideLl~~l~~ 213 (590)
T TIGR00491 199 ITGEGIPELLTMLAG 213 (590)
T ss_pred CCCCChhHHHHHHHH
Confidence 999999999998864
No 191
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=3.7e-14 Score=125.54 Aligned_cols=158 Identities=20% Similarity=0.202 Sum_probs=102.1
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|++++... ...|..|+.......+..++ ...+.++|+||...-.+
T Consensus 169 NaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~------------------------- 222 (390)
T PRK12298 169 NAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGAS------------------------- 222 (390)
T ss_pred CCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCcccccc-------------------------
Confidence 7999999999997543 23344444333333344332 13478899999643111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC---ChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV---NPASFENVRAKWYPEVRHHC---PSTPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt---~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~ 153 (228)
.+.++...|..+.+. ++++++|+|++ +.+.+..+. .|+.++..+. ...|++||+||+
T Consensus 223 ---~~~~Lg~~~l~~i~r-------------advlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKi 285 (390)
T PRK12298 223 ---EGAGLGIRFLKHLER-------------CRVLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKI 285 (390)
T ss_pred ---chhhHHHHHHHHHHh-------------CCEEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCC
Confidence 111122222222222 29999999998 456677776 8888888764 368999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-ceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA-VKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
|+..... + .+....+.+.++. .+++++||+++.|++++++++...+..
T Consensus 286 Dl~~~~e------------l-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 286 DLLDEEE------------A-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred ccCChHH------------H-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 9975421 1 1233344444442 268999999999999999999988754
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.60 E-value=9.5e-15 Score=138.65 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=92.4
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++... ...+..+..+........++ ..+.+|||+|.+....-.
T Consensus 285 nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~---------------------- 340 (712)
T PRK09518 285 NVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGI---------------------- 340 (712)
T ss_pred CCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccH----------------------
Confidence 7999999999997653 22332232333333444455 457889999976321100
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+..+..++...+ ..+|++++|+|+++.-+.. ...|...++.. +.|+++|+||+|+...
T Consensus 341 ---------~~~~~~~~~~~~---------~~aD~iL~VvDa~~~~~~~--d~~i~~~Lr~~--~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 341 ---------DSAIASQAQIAV---------SLADAVVFVVDGQVGLTST--DERIVRMLRRA--GKPVVLAVNKIDDQAS 398 (712)
T ss_pred ---------HHHHHHHHHHHH---------HhCCEEEEEEECCCCCCHH--HHHHHHHHHhc--CCCEEEEEECcccccc
Confidence 000111110000 1129999999998743332 22566666544 7999999999998653
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. ....+. .+|....+++||++|.||+++|++++..+..
T Consensus 399 ~~----------------~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 399 EY----------------DAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred hh----------------hHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 10 111221 2343456899999999999999999998765
No 193
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.59 E-value=1.5e-14 Score=134.56 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=99.0
Q ss_pred CCChhhhHHhhhhC--CCCC-----CCC------ceeeeccc-eeEEE-----cCeEEeeeeeeCCCCcccccCCCCccc
Q psy8274 1 AVGKTCLLISYTTN--AFPG-----EYI------PTVFDNYS-ANVMV-----DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~-----~~~------~t~~~~~~-~~~~~-----~~~~~~~~i~D~~g~~~~~~~~~~~~~ 61 (228)
++|||||+.+|+.. .+.. .+. .+.+.+.. ..+.+ ++..+.+.+|||||+.+|...+...+.
T Consensus 17 d~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~ 96 (600)
T PRK05433 17 DHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLA 96 (600)
T ss_pred CCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHHH
Confidence 68999999999863 2211 110 01111111 11111 566789999999999988765555555
Q ss_pred cccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC
Q psy8274 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~ 141 (228)
.+ |++|+|+|++++....... .|.....
T Consensus 97 ~a------------------------------------------------D~aILVVDas~gv~~qt~~-~~~~~~~--- 124 (600)
T PRK05433 97 AC------------------------------------------------EGALLVVDASQGVEAQTLA-NVYLALE--- 124 (600)
T ss_pred HC------------------------------------------------CEEEEEEECCCCCCHHHHH-HHHHHHH---
Confidence 55 9999999999876665554 5543322
Q ss_pred CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 142 PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.|+++|+||+|+..... ......+.+.+++ ..++++||++|.|++++++++...+..+.
T Consensus 125 ~~lpiIvViNKiDl~~a~~--------------~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 125 NDLEIIPVLNKIDLPAADP--------------ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred CCCCEEEEEECCCCCcccH--------------HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 3689999999999865311 1111233333443 24899999999999999999999886554
No 194
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.58 E-value=1e-14 Score=112.92 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=90.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++++++.+.....++.+.... ..+..++ .+.+||++|...... +.. ..+.+..
T Consensus 9 g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~--~~~-------~~~~~~~------ 70 (170)
T cd01876 9 NVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKV--SKE-------VKEKWGK------ 70 (170)
T ss_pred CCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCcccccc--CHH-------HHHHHHH------
Confidence 79999999999977665555555433222 1223333 788999999654321 000 0000000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
.+...+.. ..+++++++++|.++..+.... ..+..+... +.|+++|+||+|+....
T Consensus 71 ------~~~~~~~~--------------~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 71 ------LIEEYLEN--------------RENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKS 126 (170)
T ss_pred ------HHHHHHHh--------------ChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChH
Confidence 00000000 1223889999999876433221 223333333 58999999999996543
Q ss_pred HHHHHHhhccCccccHHHHHHHHH-HhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAK-EIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.. ...........+ .....+++++||+++.+++++++++.+.
T Consensus 127 ~~----------~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 127 EL----------AKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HH----------HHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 21 111122222332 2333689999999999999999999864
No 195
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.56 E-value=8.2e-14 Score=115.50 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=38.8
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+|+++|+||+|+.... ++..+++. ..++++||++|.|++++|+.+.+.+
T Consensus 176 y~p~iiV~NK~Dl~~~~-----------------~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 176 YIPCLYVYNKIDLISIE-----------------ELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EeeEEEEEECccCCCHH-----------------HHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 36999999999987542 23344442 3689999999999999999998754
No 196
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.54 E-value=8.7e-14 Score=122.48 Aligned_cols=149 Identities=20% Similarity=0.172 Sum_probs=105.7
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccc--cCCCCccccccchhHHhhcchhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD--RLRPLSYPQTGLSMAKEIGAVKY 76 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (228)
|||||||+||+++.+. ..++..++.|.......+.+.. +.++||+|-+... .+.. +..
T Consensus 13 NVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~-------~i~--------- 74 (444)
T COG1160 13 NVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQE-------LIR--------- 74 (444)
T ss_pred CCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHH-------HHH---------
Confidence 8999999999997764 5677778888888888888865 7888999976433 1111 111
Q ss_pred hhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 77 LECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
+|...+..++ |++|||+|....-+-.+- .+...|+ ..++|++||+||+|-.
T Consensus 75 -----------~Qa~~Ai~eA--------------DvilfvVD~~~Git~~D~--~ia~~Lr--~~~kpviLvvNK~D~~ 125 (444)
T COG1160 75 -----------EQALIAIEEA--------------DVILFVVDGREGITPADE--EIAKILR--RSKKPVILVVNKIDNL 125 (444)
T ss_pred -----------HHHHHHHHhC--------------CEEEEEEeCCCCCCHHHH--HHHHHHH--hcCCCEEEEEEcccCc
Confidence 1112222222 999999998765454433 4555666 3379999999999976
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. ++...-.-.+|+...+.+||..|.|+.+|+++++..+.
T Consensus 126 ~~-----------------e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 126 KA-----------------EELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred hh-----------------hhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 43 12223334567778999999999999999999999873
No 197
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.53 E-value=6.6e-14 Score=130.43 Aligned_cols=146 Identities=21% Similarity=0.208 Sum_probs=90.8
Q ss_pred CCChhhhHHhhhh---CCCCCCC--CceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchh
Q psy8274 1 AVGKTCLLISYTT---NAFPGEY--IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVK 75 (228)
Q Consensus 1 gvGKTsli~~~~~---~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (228)
++|||||+++|++ +.+.++. -.|+...|......++. .+.+||+||+++|.......+..+
T Consensus 10 dhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~------------ 75 (614)
T PRK10512 10 DHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGI------------ 75 (614)
T ss_pred CCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCHHHHHHHHHHHhhcC------------
Confidence 5899999999984 3444333 23332222211111333 478999999987743222222333
Q ss_pred hhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCC-EEEEEe
Q psy8274 76 YLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTP-IILVGT 151 (228)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~p-iilv~n 151 (228)
|++++|+|+++ +.+.+.+ ..+... ++| ++||+|
T Consensus 76 ------------------------------------D~~lLVVda~eg~~~qT~ehl-----~il~~l--gi~~iIVVlN 112 (614)
T PRK10512 76 ------------------------------------DHALLVVACDDGVMAQTREHL-----AILQLT--GNPMLTVALT 112 (614)
T ss_pred ------------------------------------CEEEEEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEE
Confidence 99999999987 4444443 223222 355 579999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
|+|+.+.... + ...++...+....++ .+++++||++|.|++++++.+.....
T Consensus 113 KiDlv~~~~~-~---------~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 113 KADRVDEARI-A---------EVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CCccCCHHHH-H---------HHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 9999764211 1 112344555555442 57999999999999999999986543
No 198
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.51 E-value=7.5e-14 Score=125.39 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=53.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHH--HHhhhCCCCCEEEEEeCCCCCCch-HHHHHHhhccCccccHHHHHHHHHHhCC-
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYP--EVRHHCPSTPIILVGTKLDLRDDK-ETIEKLKEKKLAPITYPQGLSMAKEIGA- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~--~l~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 187 (228)
|++++|+|+++++++... .+.. .+.......|++||+||+|+.+.. +.. .....++..+++..++
T Consensus 110 D~~ilVvDa~~~~~~~~~--~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~---------~~~~~ei~~~~~~~g~~ 178 (426)
T TIGR00483 110 DAAVLVVAVGDGEFEVQP--QTREHAFLARTLGINQLIVAINKMDSVNYDEEEF---------EAIKKEVSNLIKKVGYN 178 (426)
T ss_pred CEEEEEEECCCCCcccCC--chHHHHHHHHHcCCCeEEEEEEChhccCccHHHH---------HHHHHHHHHHHHHcCCC
Confidence 999999999988654221 1111 122222345799999999997421 111 1223456677777663
Q ss_pred ---ceEEEecccCCCCHHHHH
Q psy8274 188 ---VKYLECSALTQKGLKTVF 205 (228)
Q Consensus 188 ---~~~~evSa~~~~~v~~lf 205 (228)
.+++++||++|.|+++++
T Consensus 179 ~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 179 PDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred cccceEEEeeccccccccccc
Confidence 579999999999998733
No 199
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.49 E-value=5.7e-13 Score=126.84 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=99.1
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|++++... .+++..+..+..... ++.....+.+||+||...+......... ...++...
T Consensus 13 NvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~--~E~i~~~~-------- 80 (772)
T PRK09554 13 NSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSL--DEQIACHY-------- 80 (772)
T ss_pred CCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccH--HHHHHHHH--------
Confidence 7999999999997654 223333222222223 3344467899999999876543221110 01111110
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
... ..+|++++|+|.++.+.-. .|...+.+. +.|+++|+||+|+.+.
T Consensus 81 ------------------l~~--------~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~- 127 (772)
T PRK09554 81 ------------------ILS--------GDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEK- 127 (772)
T ss_pred ------------------Hhc--------cCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhc-
Confidence 001 1229999999999865432 233344443 6999999999998753
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.+ ..+...+.+.+|+ +++++||++|.|++++.+.+.+..
T Consensus 128 -----------~~i-~id~~~L~~~LG~-pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 128 -----------QNI-RIDIDALSARLGC-PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred -----------cCc-HHHHHHHHHHhCC-CEEEEEeecCCCHHHHHHHHHHhh
Confidence 223 2456778888995 899999999999999999888754
No 200
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=4.5e-13 Score=104.69 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=107.0
Q ss_pred CCChhhhHHhhhhCCC--------CCCCCc----eeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhH
Q psy8274 1 AVGKTCLLISYTTNAF--------PGEYIP----TVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMA 68 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--------~~~~~~----t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~ 68 (228)
|+||||+++++..... ...+.. |+..+|.. +.+++ ...+-++|||||.+|.-+|....+++
T Consensus 20 ~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~~~-~~~v~LfgtPGq~RF~fm~~~l~~ga----- 92 (187)
T COG2229 20 GAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IELDE-DTGVHLFGTPGQERFKFMWEILSRGA----- 92 (187)
T ss_pred ccchhhHHHHhhccccceeeccccccccccccceeEeecccc-eEEcC-cceEEEecCCCcHHHHHHHHHHhCCc-----
Confidence 6899999999987764 112222 22333332 22222 24677899999999999999999888
Q ss_pred HhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEE
Q psy8274 69 KEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIIL 148 (228)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piil 148 (228)
.+.+++.|.+.+..+ +.. .++..+.+.++ +|++|
T Consensus 93 -------------------------------------------~gaivlVDss~~~~~-~a~-~ii~f~~~~~~-ip~vV 126 (187)
T COG2229 93 -------------------------------------------VGAIVLVDSSRPITF-HAE-EIIDFLTSRNP-IPVVV 126 (187)
T ss_pred -------------------------------------------ceEEEEEecCCCcch-HHH-HHHHHHhhccC-CCEEE
Confidence 999999999999999 444 67777777644 99999
Q ss_pred EEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--CCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 149 VGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI--GAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 149 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
++||.||.+. .+.++...+.... . .+.++++|..++++.+.++.+...
T Consensus 127 a~NK~DL~~a--------------~ppe~i~e~l~~~~~~-~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 127 AINKQDLFDA--------------LPPEKIREALKLELLS-VPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred EeeccccCCC--------------CCHHHHHHHHHhccCC-CceeeeecccchhHHHHHHHHHhh
Confidence 9999999985 3444444444433 5 689999999999999999998877
No 201
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.49 E-value=9.6e-13 Score=115.97 Aligned_cols=161 Identities=21% Similarity=0.224 Sum_probs=110.1
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|++++.. ...+...|..|.....+..+++. +.++||+|-.+-..+....- .-.++.-..|+.+.
T Consensus 188 NvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E---~~Sv~rt~~aI~~a- 261 (444)
T COG1160 188 NVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVE---KYSVARTLKAIERA- 261 (444)
T ss_pred CCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceE---EEeehhhHhHHhhc-
Confidence 799999999999764 34455667777777778888875 46679999766544443221 11222333333333
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|.|.+.+-+-++. .....+.+. ..++++|.||+|+.+.
T Consensus 262 ---------------------------------~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 262 ---------------------------------DVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEE 304 (444)
T ss_pred ---------------------------------CEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCc
Confidence 999999999998777766 455666655 7899999999999875
Q ss_pred hH-HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KE-TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.+ ..+. -..+........+..+.+.+||++|.++.++|+.+.....
T Consensus 305 ~~~~~~~---------~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 305 DEATMEE---------FKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred hhhHHHH---------HHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 22 1111 1112223333346678999999999999999999887654
No 202
>KOG0074|consensus
Probab=99.49 E-value=9.2e-14 Score=104.02 Aligned_cols=151 Identities=21% Similarity=0.263 Sum_probs=108.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||+.++...... .-.||-+-+ .+.+..+|. +.+.+||++|+...+++|.-||.+.
T Consensus 27 nAGKTT~LKqL~sED~~-hltpT~GFn-~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenv----------------- 86 (185)
T KOG0074|consen 27 NAGKTTFLKQLKSEDPR-HLTPTNGFN-TKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENV----------------- 86 (185)
T ss_pred CCcchhHHHHHccCChh-hccccCCcc-eEEEeecCc-EEEEEEecCCccccchhhhhhhhcc-----------------
Confidence 68999999999875432 223333321 244555553 8899999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
|++|+|.|.+|...|+.+.+++.+.+.... ..+|+.+.+||.|+...-
T Consensus 87 -------------------------------d~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 87 -------------------------------DGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA 135 (185)
T ss_pred -------------------------------ceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc
Confidence 999999999999999998866666666543 468999999999988653
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+.+....- -....+... ..+-++||.+++|+.+..+|+....
T Consensus 136 ~~eeia~kl---------nl~~lrdRs-whIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 136 KVEEIALKL---------NLAGLRDRS-WHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred chHHHHHhc---------chhhhhhce-EEeeeCccccccCccCcchhhhcCC
Confidence 221111000 001111112 4678899999999999999987644
No 203
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.48 E-value=1.2e-13 Score=110.53 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=58.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC-----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG----- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----- 186 (228)
|++|+|.|+.+.-.-... ..+..+... ++|+++|.||+|+.... .+. +-.+....+.+..+
T Consensus 95 D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~~--~~~--------~~~~~~~~l~~~~~~~~~~ 160 (188)
T PF00009_consen 95 DIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEKE--LEE--------IIEEIKEKLLKEYGENGEE 160 (188)
T ss_dssp SEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHHH--HHH--------HHHHHHHHHHHHTTSTTTS
T ss_pred ccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhhh--HHH--------HHHHHHHHhccccccCccc
Confidence 999999999876444332 344455555 68899999999998321 110 11111224444442
Q ss_pred CceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..+++++||++|.|++++++.+.+.+
T Consensus 161 ~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 161 IVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999998865
No 204
>KOG1707|consensus
Probab=99.48 E-value=3.3e-14 Score=127.62 Aligned_cols=156 Identities=24% Similarity=0.359 Sum_probs=107.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
||||||||-+++...|.+.-.+ ..+.+..-..+....+...+.|++....-+.....-++.+
T Consensus 19 G~GKtSLImSL~~eef~~~VP~-rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA----------------- 80 (625)
T KOG1707|consen 19 GVGKTSLIMSLLEEEFVDAVPR-RLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA----------------- 80 (625)
T ss_pred CccHHHHHHHHHhhhccccccc-cCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhc-----------------
Confidence 8999999999999998754333 2222221122233445577889874433221111112222
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLRD 157 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~ 157 (228)
|++.++|++++++|++.+.-+|++.+++.. -.+||||||||+|+..
T Consensus 81 -------------------------------~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 81 -------------------------------DVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred -------------------------------CEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 999999999999999999989999999987 4699999999999987
Q ss_pred chHHHHHHhhccCccccHHH-HHHHHHHh-CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQ-GLSMAKEI-GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
... -+.+. ...+...+ .+-.+++|||++..++.++|.-.-.+++-+..
T Consensus 130 ~~~------------~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~ 179 (625)
T KOG1707|consen 130 NEN------------NSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPTS 179 (625)
T ss_pred ccc------------cchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCc
Confidence 532 11111 22222222 22358899999999999999999999987654
No 205
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.47 E-value=3.6e-13 Score=120.91 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=51.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA---- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---- 187 (228)
|++++|+|++++.++......++..+... ...|+++|+||+|+....... .....++...+.+..++
T Consensus 109 D~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~--------~~~~~~~i~~~l~~~g~~~~~ 179 (425)
T PRK12317 109 DAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKR--------YEEVKEEVSKLLKMVGYKPDD 179 (425)
T ss_pred CEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHH--------HHHHHHHHHHHHHhhCCCcCc
Confidence 99999999987323322221222223222 234689999999997521100 00123445566666653
Q ss_pred ceEEEecccCCCCHHHHH
Q psy8274 188 VKYLECSALTQKGLKTVF 205 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf 205 (228)
.+++++||++|.|+++++
T Consensus 180 ~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 180 IPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ceEEEeecccCCCccccc
Confidence 479999999999998743
No 206
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.47 E-value=1.4e-13 Score=112.45 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=67.5
Q ss_pred CCChhhhHHhhhhCCCCCCC-----------Ccee------eecc-c--eeEEE---cCeEEeeeeeeCCCCcccccCCC
Q psy8274 1 AVGKTCLLISYTTNAFPGEY-----------IPTV------FDNY-S--ANVMV---DGKPINLGLWDTAGQEDYDRLRP 57 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~-----------~~t~------~~~~-~--~~~~~---~~~~~~~~i~D~~g~~~~~~~~~ 57 (228)
|+|||||+.+|+...+.... ..+. +... . ..+.. ++..+.+.+|||||+..+.....
T Consensus 10 ~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~~ 89 (213)
T cd04167 10 HHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEVA 89 (213)
T ss_pred CCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHHH
Confidence 79999999999976543211 0110 1111 0 11111 35568899999999987754444
Q ss_pred CccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHH
Q psy8274 58 LSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEV 137 (228)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l 137 (228)
..+..+ |++++|+|+++..++... .++...
T Consensus 90 ~~~~~a------------------------------------------------D~~llVvD~~~~~~~~~~--~~~~~~ 119 (213)
T cd04167 90 AALRLS------------------------------------------------DGVVLVVDVVEGVTSNTE--RLIRHA 119 (213)
T ss_pred HHHHhC------------------------------------------------CEEEEEEECCCCCCHHHH--HHHHHH
Confidence 344444 999999999987776542 444444
Q ss_pred hhhCCCCCEEEEEeCCCCC
Q psy8274 138 RHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 138 ~~~~~~~piilv~nK~Dl~ 156 (228)
... +.|+++|+||+|+.
T Consensus 120 ~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 120 ILE--GLPIVLVINKIDRL 136 (213)
T ss_pred HHc--CCCEEEEEECcccC
Confidence 332 58999999999986
No 207
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.46 E-value=6.1e-13 Score=123.38 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=88.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCc----eeeeccc-eeE--EEcCeEE----------eeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIP----TVFDNYS-ANV--MVDGKPI----------NLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~----t~~~~~~-~~~--~~~~~~~----------~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||++++.+..+...... +++.++. ... ...+... .+.+|||||++.|..++...+..+
T Consensus 16 ~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~a 95 (586)
T PRK04004 16 DHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALA 95 (586)
T ss_pred CCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhC
Confidence 6899999999986554322222 3332221 000 0011111 268999999998876655444444
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHH 140 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~ 140 (228)
|++++|+|+++ +.++..+. .+..
T Consensus 96 ------------------------------------------------D~~IlVvDa~~g~~~qt~e~i~-----~~~~- 121 (586)
T PRK04004 96 ------------------------------------------------DIAILVVDINEGFQPQTIEAIN-----ILKR- 121 (586)
T ss_pred ------------------------------------------------CEEEEEEECCCCCCHhHHHHHH-----HHHH-
Confidence 99999999997 66666553 2222
Q ss_pred CCCCCEEEEEeCCCCCCchH------H-----------HHHHhhc--------cCccccHHHHHHHHHH-hCCceEEEec
Q psy8274 141 CPSTPIILVGTKLDLRDDKE------T-----------IEKLKEK--------KLAPITYPQGLSMAKE-IGAVKYLECS 194 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~~~------~-----------~~~~~~~--------~~~~v~~~~~~~~~~~-~~~~~~~evS 194 (228)
.++|+++++||+|+...-. . .+.+... ....+..+.... .+. .+..+++++|
T Consensus 122 -~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~-~~~~~~~v~ivpiS 199 (586)
T PRK04004 122 -RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDR-VKDFTKTVAIVPVS 199 (586)
T ss_pred -cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhh-hhccCCCceEeecc
Confidence 3789999999999852100 0 0000000 000011110000 011 1336799999
Q ss_pred ccCCCCHHHHHHHHHH
Q psy8274 195 ALTQKGLKTVFDEAIR 210 (228)
Q Consensus 195 a~~~~~v~~lf~~l~~ 210 (228)
|++|.|+++++..+..
T Consensus 200 A~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 200 AKTGEGIPDLLMVLAG 215 (586)
T ss_pred CCCCCChHHHHHHHHH
Confidence 9999999999988764
No 208
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.46 E-value=1.1e-12 Score=109.08 Aligned_cols=161 Identities=19% Similarity=0.127 Sum_probs=97.1
Q ss_pred CCChhhhHHhhhhCCCCC------CCCceeee----------cc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPG------EYIPTVFD----------NY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~------~~~~t~~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||+++++...-.. ....+..+ +. .....+......+.+|||||+..|...+...++.+
T Consensus 9 ~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~a 88 (237)
T cd04168 9 DAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVL 88 (237)
T ss_pred CCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHh
Confidence 799999999998642110 00011111 11 11223334457889999999987765444444444
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPS 143 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~ 143 (228)
|++++|+|+++...... . .+...+... +
T Consensus 89 ------------------------------------------------D~~IlVvd~~~g~~~~~-~-~~~~~~~~~--~ 116 (237)
T cd04168 89 ------------------------------------------------DGAILVISAVEGVQAQT-R-ILWRLLRKL--N 116 (237)
T ss_pred ------------------------------------------------CeEEEEEeCCCCCCHHH-H-HHHHHHHHc--C
Confidence 99999999998755432 2 555555544 6
Q ss_pred CCEEEEEeCCCCCCch--HHHHHH---hhc----------------------------------------cCccccHHHH
Q psy8274 144 TPIILVGTKLDLRDDK--ETIEKL---KEK----------------------------------------KLAPITYPQG 178 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~--~~~~~~---~~~----------------------------------------~~~~v~~~~~ 178 (228)
+|+++++||+|+.... ...+.. .+. ....++.++.
T Consensus 117 ~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el 196 (237)
T cd04168 117 IPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELEL 196 (237)
T ss_pred CCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHH
Confidence 8999999999987532 111110 000 0112333333
Q ss_pred HHHHHH----hCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 179 LSMAKE----IGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 179 ~~~~~~----~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..-.+. -.++|.|..||.++.||..+++.+...+.
T Consensus 197 ~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 197 DNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred HHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 322222 23467888899999999999999988653
No 209
>COG1159 Era GTPase [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=108.75 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=98.5
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|++++....- .-..|+.......+..+ ..++.+.||||-....... ++.|-+...
T Consensus 16 NvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l-------~~~m~~~a~------ 80 (298)
T COG1159 16 NVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHAL-------GELMNKAAR------ 80 (298)
T ss_pred CCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHH-------HHHHHHHHH------
Confidence 799999999999887531 22223333333333333 4678889999975432211 222222211
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.. -..+|+++||.|++.+..-.+- ..++.+.. .+.|++++.||+|...+
T Consensus 81 ------------------~s---------l~dvDlilfvvd~~~~~~~~d~--~il~~lk~--~~~pvil~iNKID~~~~ 129 (298)
T COG1159 81 ------------------SA---------LKDVDLILFVVDADEGWGPGDE--FILEQLKK--TKTPVILVVNKIDKVKP 129 (298)
T ss_pred ------------------HH---------hccCcEEEEEEeccccCCccHH--HHHHHHhh--cCCCeEEEEEccccCCc
Confidence 11 1233999999999875443321 34445554 36899999999999876
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
... . ......+...+.+...+++||+.|.|++.+.+.+...+..
T Consensus 130 ~~~-----------l-~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 130 KTV-----------L-LKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred HHH-----------H-HHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 421 1 2223334444566689999999999999999988887654
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=99.43 E-value=1.2e-12 Score=121.68 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=97.9
Q ss_pred CCChhhhHHhhhh--CCCCCCCC------------ceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccc
Q psy8274 1 AVGKTCLLISYTT--NAFPGEYI------------PTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGL 65 (228)
Q Consensus 1 gvGKTsli~~~~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 65 (228)
++|||||+.+|+. +.|...+. .+.+.++ .+...++...+.+.+|||||+.+|...+..+++.+
T Consensus 15 d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~a-- 92 (607)
T PRK10218 15 DHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMV-- 92 (607)
T ss_pred CCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhC--
Confidence 6899999999996 45533221 1112222 22334455568899999999998876666566665
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP 145 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p 145 (228)
|++++|+|+++....... .++..+... ++|
T Consensus 93 ----------------------------------------------Dg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip 122 (607)
T PRK10218 93 ----------------------------------------------DSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLK 122 (607)
T ss_pred ----------------------------------------------CEEEEEEecccCccHHHH--HHHHHHHHc--CCC
Confidence 999999999875433322 233333333 689
Q ss_pred EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHH-------HHhCCceEEEecccCCC----------CHHHHHHHH
Q psy8274 146 IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMA-------KEIGAVKYLECSALTQK----------GLKTVFDEA 208 (228)
Q Consensus 146 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~evSa~~~~----------~v~~lf~~l 208 (228)
++++.||+|+....... ..++...+. .... ++++.+||++|. ++..+|+.+
T Consensus 123 ~IVviNKiD~~~a~~~~-----------vl~ei~~l~~~l~~~~~~~~-~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~I 190 (607)
T PRK10218 123 PIVVINKVDRPGARPDW-----------VVDQVFDLFVNLDATDEQLD-FPIVYASALNGIAGLDHEDMAEDMTPLYQAI 190 (607)
T ss_pred EEEEEECcCCCCCchhH-----------HHHHHHHHHhccCccccccC-CCEEEeEhhcCcccCCccccccchHHHHHHH
Confidence 99999999987542210 001111111 1123 579999999998 588999998
Q ss_pred HHHhcCCC
Q psy8274 209 IRAVLCPV 216 (228)
Q Consensus 209 ~~~i~~~~ 216 (228)
+..+..+.
T Consensus 191 i~~iP~P~ 198 (607)
T PRK10218 191 VDHVPAPD 198 (607)
T ss_pred HHhCCCCC
Confidence 88886553
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.41 E-value=9.3e-13 Score=122.27 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=95.8
Q ss_pred CCChhhhHHhhhh--CCCCCCCCce--e----------eecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccc
Q psy8274 1 AVGKTCLLISYTT--NAFPGEYIPT--V----------FDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGL 65 (228)
Q Consensus 1 gvGKTsli~~~~~--~~~~~~~~~t--~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 65 (228)
++|||||+.+++. +.|......+ + +.+. .+...++...+.+.+|||||+.+|.......+..+
T Consensus 11 d~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~a-- 88 (594)
T TIGR01394 11 DHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMV-- 88 (594)
T ss_pred CCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhC--
Confidence 6899999999996 4443221100 0 1111 12223334457889999999988765444444444
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP 145 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p 145 (228)
|++++|+|+++.. ..... .|+..+... ++|
T Consensus 89 ----------------------------------------------D~alLVVDa~~G~-~~qT~-~~l~~a~~~--~ip 118 (594)
T TIGR01394 89 ----------------------------------------------DGVLLLVDASEGP-MPQTR-FVLKKALEL--GLK 118 (594)
T ss_pred ----------------------------------------------CEEEEEEeCCCCC-cHHHH-HHHHHHHHC--CCC
Confidence 9999999998743 22222 455555544 689
Q ss_pred EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH-------HhCCceEEEecccCCC----------CHHHHHHHH
Q psy8274 146 IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK-------EIGAVKYLECSALTQK----------GLKTVFDEA 208 (228)
Q Consensus 146 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~evSa~~~~----------~v~~lf~~l 208 (228)
+++|+||+|+.+.... + + ..+...+.. .+. .+++++||++|. |+..+|+.+
T Consensus 119 ~IVviNKiD~~~a~~~-~---------v-~~ei~~l~~~~g~~~e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~I 186 (594)
T TIGR01394 119 PIVVINKIDRPSARPD-E---------V-VDEVFDLFAELGADDEQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAI 186 (594)
T ss_pred EEEEEECCCCCCcCHH-H---------H-HHHHHHHHHhhcccccccc-CcEEechhhcCcccccCcccccCHHHHHHHH
Confidence 9999999998653210 0 0 112222221 234 479999999995 799999999
Q ss_pred HHHhcCCC
Q psy8274 209 IRAVLCPV 216 (228)
Q Consensus 209 ~~~i~~~~ 216 (228)
+..+..+.
T Consensus 187 v~~lP~P~ 194 (594)
T TIGR01394 187 VRHVPAPK 194 (594)
T ss_pred HHhCCCCC
Confidence 99887654
No 212
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.41 E-value=8.8e-13 Score=117.74 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=56.6
Q ss_pred ceEEEEEecCChh----hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVNPA----SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~----s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|++++|+|++++. +.+.+ ..+... ...|+++|+||+|+.+..... ...++...+.+..
T Consensus 105 D~aIlVVDa~~g~~~~qt~e~l-----~~l~~~-gi~~iIVvvNK~Dl~~~~~~~----------~~~~~i~~~l~~~~~ 168 (406)
T TIGR03680 105 DGALLVIAANEPCPQPQTKEHL-----MALEII-GIKNIVIVQNKIDLVSKEKAL----------ENYEEIKEFVKGTVA 168 (406)
T ss_pred CEEEEEEECCCCccccchHHHH-----HHHHHc-CCCeEEEEEEccccCCHHHHH----------HHHHHHHhhhhhccc
Confidence 9999999999643 33333 222222 235789999999998643211 1122333333332
Q ss_pred -CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 186 -GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 186 -~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+ .+++++||++|.|++++++++...+..
T Consensus 169 ~~-~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 169 EN-APIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred CC-CeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 4 479999999999999999999986643
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.40 E-value=1.4e-12 Score=116.51 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=57.1
Q ss_pred ceEEEEEecCCh----hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVNP----ASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~~----~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|++++|+|++++ .+...+. .+... ...|+++|+||+|+.+..... ...++...+++..
T Consensus 110 D~~llVVDa~~~~~~~~t~~~l~-----~l~~~-~i~~iiVVlNK~Dl~~~~~~~----------~~~~~i~~~l~~~~~ 173 (411)
T PRK04000 110 DGAILVIAANEPCPQPQTKEHLM-----ALDII-GIKNIVIVQNKIDLVSKERAL----------ENYEQIKEFVKGTVA 173 (411)
T ss_pred CEEEEEEECCCCCCChhHHHHHH-----HHHHc-CCCcEEEEEEeeccccchhHH----------HHHHHHHHHhccccC
Confidence 999999999964 3333332 22222 234789999999997643211 1122333444322
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
...+++++||++|.|++++++.+...+..+
T Consensus 174 ~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 174 ENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred CCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 125899999999999999999998876543
No 214
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.40 E-value=1.9e-12 Score=105.39 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=48.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ce
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~ 189 (228)
|++++|+|++++..-... .+...+... ...++|+|+||+|+........ .....+...+.+.+++ .+
T Consensus 102 d~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~ 170 (208)
T cd04166 102 DLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEEVF--------EEIVADYLAFAAKLGIEDIT 170 (208)
T ss_pred CEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHHHH--------HHHHHHHHHHHHHcCCCCce
Confidence 999999999875322211 222222222 2345788999999875311000 0112344556666663 35
Q ss_pred EEEecccCCCCHHHH
Q psy8274 190 YLECSALTQKGLKTV 204 (228)
Q Consensus 190 ~~evSa~~~~~v~~l 204 (228)
++++||++|.|+.+.
T Consensus 171 ii~iSA~~g~ni~~~ 185 (208)
T cd04166 171 FIPISALDGDNVVSR 185 (208)
T ss_pred EEEEeCCCCCCCccC
Confidence 899999999999753
No 215
>KOG1423|consensus
Probab=99.39 E-value=4.7e-12 Score=106.27 Aligned_cols=175 Identities=15% Similarity=0.084 Sum_probs=103.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||.|++++....+...-+.....+..-.+.....++.++||||--.....+.+... -..+.+.+.|++..
T Consensus 82 NvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~--~s~lq~~~~a~q~A--- 156 (379)
T KOG1423|consen 82 NVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM--MSVLQNPRDAAQNA--- 156 (379)
T ss_pred CcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH--HHhhhCHHHHHhhC---
Confidence 7999999999999887554443333333333344455678999999996433222221111 01112233333222
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|.+++|+|+++.....+- .++..++.+ .++|-|||.||.|......
T Consensus 157 -------------------------------D~vvVv~Das~tr~~l~p--~vl~~l~~y-s~ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 157 -------------------------------DCVVVVVDASATRTPLHP--RVLHMLEEY-SKIPSILVMNKIDKLKQKR 202 (379)
T ss_pred -------------------------------CEEEEEEeccCCcCccCh--HHHHHHHHH-hcCCceeeccchhcchhhh
Confidence 999999999986665544 355555555 3689999999999876544
Q ss_pred HHHHHhh-ccCcccc---HHHHHHHHH---------HhC---CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKE-KKLAPIT---YPQGLSMAK---------EIG---AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~-~~~~~v~---~~~~~~~~~---------~~~---~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
..=.+.. -....++ .+-.+++.. ..| +..+|.+||++|+||+++-++++.+...
T Consensus 203 ~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 203 LLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 2211000 0001111 111111111 111 2448999999999999999999987753
No 216
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.37 E-value=2.4e-11 Score=103.53 Aligned_cols=160 Identities=24% Similarity=0.248 Sum_probs=110.1
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||++.+....- .++|.-|+-...-..+.+++ .-.+.+=|+||- +..|
T Consensus 169 NaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGL----------IEGA---------------- 221 (369)
T COG0536 169 NAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGL----------IEGA---------------- 221 (369)
T ss_pred CCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCccc----------cccc----------------
Confidence 7999999999997654 56777666444433444322 123555677763 3444
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh---HHHHHHhhHHHHhhhCC---CCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS---FENVRAKWYPEVRHHCP---STPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s---~~~~~~~~~~~l~~~~~---~~piilv~nK~ 153 (228)
..|.+++..|..++++. .+.++|.|++..+. .+.+. .+..+|..|.+ +.|.+||+||+
T Consensus 222 --s~G~GLG~~FLrHIERt-------------~vL~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKi 285 (369)
T COG0536 222 --SEGVGLGLRFLRHIERT-------------RVLLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKI 285 (369)
T ss_pred --ccCCCccHHHHHHHHhh-------------heeEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEecc
Confidence 68899999999999885 99999999986553 55555 66777887753 68999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|+....+..+ .....+.+..+...++.+||.++.|++++...+.+.+...
T Consensus 286 D~~~~~e~~~------------~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 286 DLPLDEEELE------------ELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCCcCHHHHH------------HHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 9665432111 1223333344433333399999999999999998877654
No 217
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.36 E-value=4.4e-12 Score=104.52 Aligned_cols=94 Identities=18% Similarity=0.098 Sum_probs=55.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHh---hc-c--------CccccHHHHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLK---EK-K--------LAPITYPQGL 179 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~---~~-~--------~~~v~~~~~~ 179 (228)
|++++|.|++.+..-... .++..+... ++|+++|.||+|+.+.....+... .. . ...-+.+++.
T Consensus 111 D~~llVvda~~g~~~~d~--~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~ 186 (224)
T cd04165 111 DYAMLVVAANAGIIGMTK--EHLGLALAL--NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVV 186 (224)
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeeccccee
Confidence 999999998765442222 445555544 689999999999875432111111 00 0 0000111222
Q ss_pred HHHHHh---CCceEEEecccCCCCHHHHHHHHH
Q psy8274 180 SMAKEI---GAVKYLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 180 ~~~~~~---~~~~~~evSa~~~~~v~~lf~~l~ 209 (228)
..++.. ...++|.+||.+|+|++++...+.
T Consensus 187 ~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 187 LAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred ehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 222211 235899999999999999887664
No 218
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.35 E-value=1.4e-11 Score=109.00 Aligned_cols=150 Identities=23% Similarity=0.238 Sum_probs=105.0
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|.|++.. ...+-..|+.|.....+.++| +.+.+.||+|-.....
T Consensus 227 NvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d------------------------ 280 (454)
T COG0486 227 NVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDD------------------------ 280 (454)
T ss_pred CCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCcc------------------------
Confidence 799999999999765 345666777887888889999 5677889999643211
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..+..+++..+.....+ |.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.||...
T Consensus 281 --~VE~iGIeRs~~~i~~A--------------DlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 281 --VVERIGIERAKKAIEEA--------------DLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred --HHHHHHHHHHHHHHHhC--------------CEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccc
Confidence 13444555555555554 999999999986333333 2222 33346899999999999975
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.. .. .+ +..+-.+++.+|+++|.|++++.+.+...+...
T Consensus 340 ~~--------------~~---~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 340 IE--------------LE---SE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cc--------------cc---hh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 21 11 11 111113689999999999999999998877655
No 219
>KOG1489|consensus
Probab=99.35 E-value=3.3e-11 Score=101.69 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=107.4
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||++.+++..- .+.|.-|+-...-.++..++.. .+.+=|+||-- +++
T Consensus 206 NAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI----------~GA---------------- 258 (366)
T KOG1489|consen 206 NAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGII----------EGA---------------- 258 (366)
T ss_pred CCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCcccc----------ccc----------------
Confidence 7999999999997653 4566666543333344444332 27777888742 232
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhC---CCCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHC---PSTPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~---~~~piilv~nK~ 153 (228)
.-+++++-.|.-++++. +..+||.|++.. ..++.+. .+..+++.+. .+.|.++|+||+
T Consensus 259 --h~nkGlG~~FLrHiER~-------------~~l~fVvD~s~~~~~~p~~~~~-lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 259 --HMNKGLGYKFLRHIERC-------------KGLLFVVDLSGKQLRNPWQQLQ-LLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred --cccCcccHHHHHHHHhh-------------ceEEEEEECCCcccCCHHHHHH-HHHHHHHHHhhhhccCceEEEEecc
Confidence 45667778888888775 999999999988 7777776 6666777664 368999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
|+.+... .-...+++.+.-..++++||+++++++++++.+-.
T Consensus 323 D~~eae~---------------~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 323 DLPEAEK---------------NLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CchhHHH---------------HHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 9964311 11345666665334899999999999999987754
No 220
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=3.3e-11 Score=102.24 Aligned_cols=158 Identities=21% Similarity=0.199 Sum_probs=104.3
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++.+++... .++|.-|+-.-+-+ +++.....+|++||||--+...
T Consensus 178 NVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hfe~~~~R~QvIDTPGlLDRPl------------------------- 230 (346)
T COG1084 178 NVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HFERGYLRIQVIDTPGLLDRPL------------------------- 230 (346)
T ss_pred CCcHHHHHHHHhcCCCccCCCCccccceeEe--eeecCCceEEEecCCcccCCCh-------------------------
Confidence 8999999999998765 35566565221212 3334446889999999643220
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh--HHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS--FENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s--~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
...|--|.....+.+.|. ++|+|+||.+..+. ++... +++.++..... .|+++|.||+|+.+
T Consensus 231 ---~ErN~IE~qAi~AL~hl~-----------~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~-~p~v~V~nK~D~~~ 294 (346)
T COG1084 231 ---EERNEIERQAILALRHLA-----------GVILFLFDPSETCGYSLEEQI-SLLEEIKELFK-APIVVVINKIDIAD 294 (346)
T ss_pred ---HHhcHHHHHHHHHHHHhc-----------CeEEEEEcCccccCCCHHHHH-HHHHHHHHhcC-CCeEEEEecccccc
Confidence 111223333444555555 99999999987665 45555 77777777665 89999999999986
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
... .++.......-|......+++..+.+++.+-..+.....+.
T Consensus 295 ~e~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 295 EEK--------------LEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred hhH--------------HHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence 532 22333334444545578889999999998887777765543
No 221
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.33 E-value=5.2e-12 Score=96.23 Aligned_cols=78 Identities=26% Similarity=0.274 Sum_probs=60.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.|++|.|.+++.+...- .+.... ..|+|=|.||+|+.... ...+.+.++.+..|+-+.|
T Consensus 65 d~V~ll~dat~~~~~~pP------~fa~~f-~~pvIGVITK~Dl~~~~-------------~~i~~a~~~L~~aG~~~if 124 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPP------GFASMF-NKPVIGVITKIDLPSDD-------------ANIERAKKWLKNAGVKEIF 124 (143)
T ss_pred CEEEEEecCCCCCccCCc------hhhccc-CCCEEEEEECccCccch-------------hhHHHHHHHHHHcCCCCeE
Confidence 999999999987553221 112221 58999999999999421 3456678888889998899
Q ss_pred EecccCCCCHHHHHHHHH
Q psy8274 192 ECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~ 209 (228)
++|+.+|+||++|.+.+-
T Consensus 125 ~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 125 EVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEECCCCcCHHHHHHHHh
Confidence 999999999999998763
No 222
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.33 E-value=1.6e-11 Score=99.04 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=48.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|.|++..-.-... .++..+... ++| +|++.||+|+....+..+ ....+...+....|+
T Consensus 90 D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~---------~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 90 DGAILVVSATDGPMPQTR--EHLLLARQV--GVPYIVVFLNKADMVDDEELLE---------LVEMEVRELLSKYGFDGD 156 (195)
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHH---------HHHHHHHHHHHHhccccc
Confidence 999999999864322221 333344443 466 778899999974322111 122345555555553
Q ss_pred -ceEEEecccCCCCH
Q psy8274 188 -VKYLECSALTQKGL 201 (228)
Q Consensus 188 -~~~~evSa~~~~~v 201 (228)
++++++||++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 68999999999985
No 223
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.31 E-value=8.9e-12 Score=100.65 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=55.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCcc---ccHHHHHHHHHHh--C
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAP---ITYPQGLSMAKEI--G 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~--~ 186 (228)
|+++++.| .+|......|+..+.+. ..|+++|+||+|+..+.........+.... .-.+......... .
T Consensus 82 d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 155 (197)
T cd04104 82 DFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS 155 (197)
T ss_pred CEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888733 23444444677777766 689999999999965432110000000000 0001112222221 2
Q ss_pred CceEEEeccc--CCCCHHHHHHHHHHHhcC
Q psy8274 187 AVKYLECSAL--TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 187 ~~~~~evSa~--~~~~v~~lf~~l~~~i~~ 214 (228)
..++|.+|+. .+.++..+.+.++..+..
T Consensus 156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 156 EPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 3578999998 568999999888887754
No 224
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.30 E-value=5.7e-12 Score=103.45 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=46.7
Q ss_pred ceEEEEEecCChhh---H----HHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc---hHHHHHHhhccCccccHHHHHHH
Q psy8274 112 DVFQICFSLVNPAS---F----ENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD---KETIEKLKEKKLAPITYPQGLSM 181 (228)
Q Consensus 112 d~vi~v~Dvt~~~s---~----~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~v~~~~~~~~ 181 (228)
|++++|+|+++... | .... .+ .... .....|+++|+||+|+... ....+. ..++...+
T Consensus 102 d~~i~VvDa~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~~~~~~~---------i~~~l~~~ 169 (219)
T cd01883 102 DVAVLVVDARKGEFEAGFEKGGQTRE-HA-LLAR-TLGVKQLIVAVNKMDDVTVNWSEERYDE---------IKKELSPF 169 (219)
T ss_pred CEEEEEEECCCCccccccccccchHH-HH-HHHH-HcCCCeEEEEEEccccccccccHHHHHH---------HHHHHHHH
Confidence 99999999998521 1 1111 22 1222 2233689999999999842 111110 11223334
Q ss_pred HHHhCC----ceEEEecccCCCCHH
Q psy8274 182 AKEIGA----VKYLECSALTQKGLK 202 (228)
Q Consensus 182 ~~~~~~----~~~~evSa~~~~~v~ 202 (228)
.+..+. .+++++||++|.|++
T Consensus 170 l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 170 LKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHcCCCcCCceEEEeecCcCCCCC
Confidence 445443 579999999999987
No 225
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.29 E-value=1.6e-11 Score=102.49 Aligned_cols=82 Identities=27% Similarity=0.313 Sum_probs=64.9
Q ss_pred ceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
|++++|||++++. ||..+. .|+..+.. .++|++||+||+||..... +..+.+..+. .+| .++
T Consensus 38 D~viiV~d~~~p~~s~~~l~-r~l~~~~~--~~i~~vIV~NK~DL~~~~~------------~~~~~~~~~~-~~g-~~v 100 (245)
T TIGR00157 38 DQIVIVSSAVLPELSLNQLD-RFLVVAEA--QNIEPIIVLNKIDLLDDED------------MEKEQLDIYR-NIG-YQV 100 (245)
T ss_pred CEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEECcccCCCHH------------HHHHHHHHHH-HCC-CeE
Confidence 9999999999888 898887 89877654 4799999999999975422 3333344443 477 489
Q ss_pred EEecccCCCCHHHHHHHHHH
Q psy8274 191 LECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~ 210 (228)
+++||++|.|++++|..+..
T Consensus 101 ~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 101 LMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEecCCchhHHHHHhhhcC
Confidence 99999999999999988754
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.27 E-value=4.2e-11 Score=106.61 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=46.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEE-EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|+|+++...-... +.+..+... ++|.+ ++.||+|+.+..+..+ ...++...+++.++.
T Consensus 100 D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~---------~~~~~i~~~l~~~~~~~~ 166 (394)
T TIGR00485 100 DGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEMEVRELLSEYDFPGD 166 (394)
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHHH---------HHHHHHHHHHHhcCCCcc
Confidence 999999999874322221 222233333 56755 6899999986432111 112346666766653
Q ss_pred -ceEEEecccCCC
Q psy8274 188 -VKYLECSALTQK 199 (228)
Q Consensus 188 -~~~~evSa~~~~ 199 (228)
.+++++||++|.
T Consensus 167 ~~~ii~vSa~~g~ 179 (394)
T TIGR00485 167 DTPIIRGSALKAL 179 (394)
T ss_pred CccEEECcccccc
Confidence 589999999875
No 227
>PRK12736 elongation factor Tu; Reviewed
Probab=99.27 E-value=5.2e-11 Score=106.01 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=56.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|+|+++...-... .++..+... ++| +|++.||+|+.+..+..+ .-.++...+.+..++
T Consensus 100 d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~---------~i~~~i~~~l~~~~~~~~ 166 (394)
T PRK12736 100 DGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEELLE---------LVEMEVRELLSEYDFPGD 166 (394)
T ss_pred CEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHHHHH---------HHHHHHHHHHHHhCCCcC
Confidence 999999999864322221 223333333 577 678899999975322111 112345566665553
Q ss_pred -ceEEEecccCCC--------CHHHHHHHHHHHhc
Q psy8274 188 -VKYLECSALTQK--------GLKTVFDEAIRAVL 213 (228)
Q Consensus 188 -~~~~evSa~~~~--------~v~~lf~~l~~~i~ 213 (228)
.+++++||++|. ++.++++.+...+.
T Consensus 167 ~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 167 DIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 589999999983 57788888777654
No 228
>KOG0462|consensus
Probab=99.26 E-value=8.3e-11 Score=105.34 Aligned_cols=122 Identities=21% Similarity=0.216 Sum_probs=82.2
Q ss_pred cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceE
Q psy8274 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVF 114 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~v 114 (228)
+|+.+.+.++|||||-+|..--...+..| +++
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac------------------------------------------------~G~ 152 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAAC------------------------------------------------DGA 152 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhc------------------------------------------------Cce
Confidence 47889999999999999875444444444 999
Q ss_pred EEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEec
Q psy8274 115 QICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECS 194 (228)
Q Consensus 115 i~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evS 194 (228)
|+|.|....-.-+-+. .++..++ .+..+|.|.||+|+...+.. .+ ..+...+... ...+.+.+|
T Consensus 153 lLvVDA~qGvqAQT~a-nf~lAfe---~~L~iIpVlNKIDlp~adpe----------~V-~~q~~~lF~~-~~~~~i~vS 216 (650)
T KOG0462|consen 153 LLVVDASQGVQAQTVA-NFYLAFE---AGLAIIPVLNKIDLPSADPE----------RV-ENQLFELFDI-PPAEVIYVS 216 (650)
T ss_pred EEEEEcCcCchHHHHH-HHHHHHH---cCCeEEEeeeccCCCCCCHH----------HH-HHHHHHHhcC-CccceEEEE
Confidence 9999998644333332 2222332 25678889999999875320 01 0112222222 225789999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCC
Q psy8274 195 ALTQKGLKTVFDEAIRAVLCPVPTVP 220 (228)
Q Consensus 195 a~~~~~v~~lf~~l~~~i~~~~~~~~ 220 (228)
|++|.|++++|+.+++.+.-++-...
T Consensus 217 AK~G~~v~~lL~AII~rVPpP~~~~d 242 (650)
T KOG0462|consen 217 AKTGLNVEELLEAIIRRVPPPKGIRD 242 (650)
T ss_pred eccCccHHHHHHHHHhhCCCCCCCCC
Confidence 99999999999999999987665443
No 229
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.1e-10 Score=104.69 Aligned_cols=145 Identities=21% Similarity=0.308 Sum_probs=93.8
Q ss_pred ChhhhHHhhhhCCCCCCCCceeeec-cceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 3 GKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 3 GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||+..+-..........-+... ....+.++ +..-.+.++|||||+.|..++.-=..-+
T Consensus 17 GKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vt----------------- 79 (509)
T COG0532 17 GKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVT----------------- 79 (509)
T ss_pred CccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccc-----------------
Confidence 9999999988766654433333222 23444443 1234678889999999987776433333
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|.+++|.|++| |++.+.+. .++. -++|++++.||+|..+
T Consensus 80 -------------------------------DIaILVVa~dDGv~pQTiEAI~-----hak~--a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 80 -------------------------------DIAILVVAADDGVMPQTIEAIN-----HAKA--AGVPIVVAINKIDKPE 121 (509)
T ss_pred -------------------------------cEEEEEEEccCCcchhHHHHHH-----HHHH--CCCCEEEEEecccCCC
Confidence 99999999997 44443332 2233 3899999999999986
Q ss_pred chHHH--HHHhhccCccccHHHHHHHHHHh-CCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 158 DKETI--EKLKEKKLAPITYPQGLSMAKEI-GAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 158 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+..- .++.+. .+ ....| |-..++++||++|+|+.+|+..++...
T Consensus 122 ~np~~v~~el~~~---gl-------~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 122 ANPDKVKQELQEY---GL-------VPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CCHHHHHHHHHHc---CC-------CHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 43311 111111 11 11223 236799999999999999999887654
No 230
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.25 E-value=7e-11 Score=100.32 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=86.6
Q ss_pred CCChhhhHHhhhhCCCCCC----------CCceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGE----------YIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|+|||||+|++.+..+... ..+|+. ..+...+..+|..+.+.+|||||........ ..+.....++.+
T Consensus 14 g~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~-~~~~~i~~yi~~ 92 (276)
T cd01850 14 GLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS-DCWKPIVDYIDD 92 (276)
T ss_pred CCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch-hhHHHHHHHHHH
Confidence 7999999999998877533 234442 3334556667888999999999976543211 011110001111
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILV 149 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv 149 (228)
+.. .+......+.. ++.-...++|+++++.+.+. ..+....-..+..+. ..+|+++|
T Consensus 93 q~~-----------------~~l~~e~~~~r--~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~---~~v~vi~V 149 (276)
T cd01850 93 QFD-----------------QYLREESRIKR--NPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS---KRVNIIPV 149 (276)
T ss_pred HHH-----------------HHHHHHhhhcc--cccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh---ccCCEEEE
Confidence 100 00000000000 01112334588888888764 222222113444444 36899999
Q ss_pred EeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEeccc
Q psy8274 150 GTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSAL 196 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~ 196 (228)
+||+|+....+ ...........++.++ +++|.....
T Consensus 150 inK~D~l~~~e----------~~~~k~~i~~~l~~~~-i~~~~~~~~ 185 (276)
T cd01850 150 IAKADTLTPEE----------LKEFKQRIMEDIEEHN-IKIYKFPED 185 (276)
T ss_pred EECCCcCCHHH----------HHHHHHHHHHHHHHcC-CceECCCCC
Confidence 99999976432 1123344566677777 467766553
No 231
>COG2262 HflX GTPases [General function prediction only]
Probab=99.24 E-value=2.7e-10 Score=99.37 Aligned_cols=155 Identities=22% Similarity=0.218 Sum_probs=99.6
Q ss_pred CCChhhhHHhhhhCC-CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+|++++.. +..+...+.-+.....+.+.+ ...+.+.||.|.-+-- |+.+-.+
T Consensus 202 NAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~L---P~~LV~A---------------- 261 (411)
T COG2262 202 NAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDL---PHPLVEA---------------- 261 (411)
T ss_pred cccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccC---ChHHHHH----------------
Confidence 799999999999654 334444555555566666654 2355667999964321 1111100
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|.. .|+.. ...|.+++|.|++++.....+. .....+.... ..+|+++|.||+|+...
T Consensus 262 -----------Fks----TLEE~------~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 262 -----------FKS----TLEEV------KEADLLLHVVDASDPEILEKLE-AVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred -----------HHH----HHHHh------hcCCEEEEEeecCChhHHHHHH-HHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 111 11111 1129999999999997777765 5566666653 56999999999998764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.. ......... ...+.+||++|.|++.++..+...+...
T Consensus 320 ~~-----------------~~~~~~~~~-~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 320 EE-----------------ILAELERGS-PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred hh-----------------hhhhhhhcC-CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 21 111122211 2488999999999999999999987743
No 232
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.24 E-value=1.2e-10 Score=113.26 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=89.7
Q ss_pred CChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcC----------------eEEeeeeeeCCCCcccccCCCCcccccc
Q psy8274 2 VGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDG----------------KPINLGLWDTAGQEDYDRLRPLSYPQTG 64 (228)
Q Consensus 2 vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 64 (228)
++||||+..+.+....+.....+..... ..+.++. +.-.+.+|||||++.|..++...+..+
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~a- 550 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLA- 550 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccC-
Confidence 6899999999876654433333322211 1122221 011378999999998876655444555
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~ 141 (228)
|++++|+|+++ +.++..+. .+...
T Consensus 551 -----------------------------------------------DivlLVVDa~~Gi~~qT~e~I~-----~lk~~- 577 (1049)
T PRK14845 551 -----------------------------------------------DLAVLVVDINEGFKPQTIEAIN-----ILRQY- 577 (1049)
T ss_pred -----------------------------------------------CEEEEEEECcccCCHhHHHHHH-----HHHHc-
Confidence 99999999987 55555442 33333
Q ss_pred CCCCEEEEEeCCCCCCc-h-----HHHHHHhhccCc-------------------cccHHHHHHHHHHhCCceEEEeccc
Q psy8274 142 PSTPIILVGTKLDLRDD-K-----ETIEKLKEKKLA-------------------PITYPQGLSMAKEIGAVKYLECSAL 196 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~-~-----~~~~~~~~~~~~-------------------~v~~~~~~~~~~~~~~~~~~evSa~ 196 (228)
++|+++|+||+|+... . +..+....+..+ .+..+......+-.+.+++++|||+
T Consensus 578 -~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~ 656 (1049)
T PRK14845 578 -KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAK 656 (1049)
T ss_pred -CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcC
Confidence 6899999999999632 0 000000000000 0000000000111245789999999
Q ss_pred CCCCHHHHHHHHHH
Q psy8274 197 TQKGLKTVFDEAIR 210 (228)
Q Consensus 197 ~~~~v~~lf~~l~~ 210 (228)
+|+|+++++..+..
T Consensus 657 tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 657 TGEGIPELLMMVAG 670 (1049)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999987754
No 233
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=1.7e-10 Score=101.92 Aligned_cols=150 Identities=21% Similarity=0.200 Sum_probs=97.0
Q ss_pred ChhhhHHhhhhCC--CCC---------------CCCcee-eeccceeEEE-cCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 3 GKTCLLISYTTNA--FPG---------------EYIPTV-FDNYSANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 3 GKTsli~~~~~~~--~~~---------------~~~~t~-~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|||||..|++... +.. +.--|+ .......+.. +|+.+.+.++|||||-+|.--....+..|
T Consensus 21 GKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAAC 100 (603)
T COG0481 21 GKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAAC 100 (603)
T ss_pred CcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhC
Confidence 9999999998432 211 111122 1222223332 67889999999999988753222222333
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPS 143 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~ 143 (228)
.+.++|.|.+..---+-+. ..|..+.+ +
T Consensus 101 ------------------------------------------------EGalLvVDAsQGveAQTlA-N~YlAle~---~ 128 (603)
T COG0481 101 ------------------------------------------------EGALLVVDASQGVEAQTLA-NVYLALEN---N 128 (603)
T ss_pred ------------------------------------------------CCcEEEEECccchHHHHHH-HHHHHHHc---C
Confidence 9999999999754444444 44444444 3
Q ss_pred CCEEEEEeCCCCCCchHHHHHHhhccCccccHHHH-HHHHHHhC--CceEEEecccCCCCHHHHHHHHHHHhcCCCCCC
Q psy8274 144 TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG-LSMAKEIG--AVKYLECSALTQKGLKTVFDEAIRAVLCPVPTV 219 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~--~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~ 219 (228)
..++-|.||+||..... +.. +....-.| +...+.+|||+|.||+++++.++..+..++-+.
T Consensus 129 LeIiPViNKIDLP~Adp---------------ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~ 192 (603)
T COG0481 129 LEIIPVLNKIDLPAADP---------------ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP 192 (603)
T ss_pred cEEEEeeecccCCCCCH---------------HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence 66788889999987521 122 22222233 345788999999999999999999998877543
No 234
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.6e-10 Score=106.39 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=107.6
Q ss_pred CCChhhhHHhhhhCC-CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||.|++++.. ..+++...+-+.........+.. +++.|.||-........ ...++
T Consensus 13 NvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~------DE~Va----------- 73 (653)
T COG0370 13 NVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSE------DEKVA----------- 73 (653)
T ss_pred CccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCc------hHHHH-----------
Confidence 899999999999654 45677766666566666666654 78889999765544322 11111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
..-.+...| |+++.|.|.+|-+.--.+. -++.+. +.|++++.|++|..+..
T Consensus 74 ---------------r~~ll~~~~--------D~ivnVvDAtnLeRnLylt----lQLlE~--g~p~ilaLNm~D~A~~~ 124 (653)
T COG0370 74 ---------------RDFLLEGKP--------DLIVNVVDATNLERNLYLT----LQLLEL--GIPMILALNMIDEAKKR 124 (653)
T ss_pred ---------------HHHHhcCCC--------CEEEEEcccchHHHHHHHH----HHHHHc--CCCeEEEeccHhhHHhc
Confidence 122233444 9999999999865543332 123333 78999999999987642
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+ .-+..++.+.+| +|.+++||+.|.|++++...+.+......
T Consensus 125 ------------Gi-~ID~~~L~~~LG-vPVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 125 ------------GI-RIDIEKLSKLLG-VPVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ------------CC-cccHHHHHHHhC-CCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 22 234668888999 59999999999999999999987655444
No 235
>PRK12735 elongation factor Tu; Reviewed
Probab=99.23 E-value=1.2e-10 Score=103.73 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=54.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEE-EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|+|+++...-... .++..+... ++|.+ ++.||+|+.+..+..+ ....++..+.+.+++
T Consensus 100 D~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~---------~~~~ei~~~l~~~~~~~~ 166 (396)
T PRK12735 100 DGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEMEVRELLSKYDFPGD 166 (396)
T ss_pred CEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHHHHH---------HHHHHHHHHHHHcCCCcC
Confidence 999999999874322211 233333332 57855 6799999975322111 122345566666543
Q ss_pred -ceEEEecccCCC----------CHHHHHHHHHHHhc
Q psy8274 188 -VKYLECSALTQK----------GLKTVFDEAIRAVL 213 (228)
Q Consensus 188 -~~~~evSa~~~~----------~v~~lf~~l~~~i~ 213 (228)
.+++++||++|. ++.++++.+...+.
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 167 DTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred ceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 579999999984 56777777766543
No 236
>PRK13351 elongation factor G; Reviewed
Probab=99.21 E-value=7.6e-11 Score=111.85 Aligned_cols=103 Identities=19% Similarity=0.129 Sum_probs=67.3
Q ss_pred CCChhhhHHhhhhCCCC-------------C-------CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFP-------------G-------EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-------------~-------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 60 (228)
|+|||||+++|+...-. . ++..|+...+ ..+......+.+|||||+.++...+...+
T Consensus 18 ~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~---~~~~~~~~~i~liDtPG~~df~~~~~~~l 94 (687)
T PRK13351 18 DAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA---TSCDWDNHRINLIDTPGHIDFTGEVERSL 94 (687)
T ss_pred CCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce---EEEEECCEEEEEEECCCcHHHHHHHHHHH
Confidence 79999999999853210 0 0111221111 12223346889999999987765544445
Q ss_pred ccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh
Q psy8274 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH 140 (228)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~ 140 (228)
+.+ |++++|+|+++..+..... .| ..+...
T Consensus 95 ~~a------------------------------------------------D~~ilVvd~~~~~~~~~~~-~~-~~~~~~ 124 (687)
T PRK13351 95 RVL------------------------------------------------DGAVVVFDAVTGVQPQTET-VW-RQADRY 124 (687)
T ss_pred HhC------------------------------------------------CEEEEEEeCCCCCCHHHHH-HH-HHHHhc
Confidence 554 9999999999887766543 33 334333
Q ss_pred CCCCCEEEEEeCCCCCCc
Q psy8274 141 CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~ 158 (228)
++|+++|+||+|+...
T Consensus 125 --~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 125 --GIPRLIFINKMDRVGA 140 (687)
T ss_pred --CCCEEEEEECCCCCCC
Confidence 6899999999998864
No 237
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.20 E-value=1.5e-11 Score=97.50 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCccccc-CCCC--ccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR-LRPL--SYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~ 77 (228)
|+|||+|..+|..+.+...+... .......+ -+.....+.++|+|||.+.+. +... +...+
T Consensus 13 ~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~-------------- 76 (181)
T PF09439_consen 13 GSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNA-------------- 76 (181)
T ss_dssp TSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGE--------------
T ss_pred CCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhC--------------
Confidence 79999999999998654333222 11111111 123345788999999988753 1111 12222
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC-ChhhHHHHHHhhHHHHhhh---CCCCCEEEEEeCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV-NPASFENVRAKWYPEVRHH---CPSTPIILVGTKL 153 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt-~~~s~~~~~~~~~~~l~~~---~~~~piilv~nK~ 153 (228)
.+||||.|.+ ++..+....+.++..+... ...+|++|++||+
T Consensus 77 ----------------------------------k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 77 ----------------------------------KGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp ----------------------------------EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred ----------------------------------CEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 9999999997 4566777664555555433 2468999999999
Q ss_pred CCCCch
Q psy8274 154 DLRDDK 159 (228)
Q Consensus 154 Dl~~~~ 159 (228)
|+....
T Consensus 123 Dl~~A~ 128 (181)
T PF09439_consen 123 DLFTAK 128 (181)
T ss_dssp TSTT--
T ss_pred cccccC
Confidence 998653
No 238
>KOG0077|consensus
Probab=99.18 E-value=7.6e-12 Score=96.15 Aligned_cols=150 Identities=18% Similarity=0.277 Sum_probs=102.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||++.+..++. +.+.||.-.+ +-.+.+.+ +++..+|.+|+..-+..|..++..+
T Consensus 30 NAGKTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v----------------- 88 (193)
T KOG0077|consen 30 NAGKTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQV----------------- 88 (193)
T ss_pred CCchhhHHHHHccccc-cccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhh-----------------
Confidence 7999999999998775 3677776221 22334455 6788899999998888999999988
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++.+|+-|.+.|.+.. .-++.+...- ...|+++.+||+|....
T Consensus 89 -------------------------------~~iv~lvda~d~er~~es~-~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 89 -------------------------------DAIVYLVDAYDQERFAESK-KELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred -------------------------------ceeEeeeehhhHHHhHHHH-HHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 9999999999999999887 3333333221 46899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh--------C--CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI--------G--AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~--~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
-+..+..-.. .+..++-.+ + ....|.||...+.+.-+.|.|+-..
T Consensus 137 ~se~~l~~~l--------~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 137 ASEDELRFHL--------GLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred ccHHHHHHHH--------HHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 3221110000 011111111 1 1346778888888888888776543
No 239
>KOG1490|consensus
Probab=99.16 E-value=1.4e-10 Score=103.07 Aligned_cols=164 Identities=20% Similarity=0.151 Sum_probs=115.9
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++..+..... ..|.-|.-..|- -+++.+...+++.||||--+..
T Consensus 178 NVGKSSf~~~vtradvevqpYaFTTksL~v--GH~dykYlrwQViDTPGILD~p-------------------------- 229 (620)
T KOG1490|consen 178 NVGKSSFNNKVTRADDEVQPYAFTTKLLLV--GHLDYKYLRWQVIDTPGILDRP-------------------------- 229 (620)
T ss_pred CCCcHhhcccccccccccCCcccccchhhh--hhhhhheeeeeecCCccccCcc--------------------------
Confidence 79999999999877653 234444322222 2456677788999999854321
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHH-hhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRA-KWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~-~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.+..|..|....++.++|. .+|+++.|++..+++.-..+ +++..|....-+.|+|+|+||+|+..+
T Consensus 230 --lEdrN~IEmqsITALAHLr-----------aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 230 --EEDRNIIEMQIITALAHLR-----------SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRP 296 (620)
T ss_pred --hhhhhHHHHHHHHHHHHhh-----------hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCc
Confidence 3445667777778888887 89999999998776644431 666677766778999999999999876
Q ss_pred hHHHHHHhhccCccccHHHH--HHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQG--LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
++ ++.+.. ......-|.++++++|+.+.+||.++-..+++.++..+-
T Consensus 297 ed------------L~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 297 ED------------LDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARV 345 (620)
T ss_pred cc------------cCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHH
Confidence 43 333332 222223343689999999999999999999998876543
No 240
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.16 E-value=6.7e-10 Score=91.72 Aligned_cols=160 Identities=16% Similarity=0.248 Sum_probs=90.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeE-EE-cCeEEeeeeeeCCCCcccccC-----CCCccccccchhHHhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MV-DGKPINLGLWDTAGQEDYDRL-----RPLSYPQTGLSMAKEIGA 73 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~-~~-~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~ 73 (228)
|+||||+.+-...+..+.++. ..+.+..... .+ ....+.+.+||.||+..+... ....++++
T Consensus 9 ~SGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v---------- 77 (232)
T PF04670_consen 9 RSGKTSIRSVIFHKYSPRDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV---------- 77 (232)
T ss_dssp TSSHHHHHHHHHS---GGGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE----------
T ss_pred CCChhhHHHHHHcCCCchhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhcc----------
Confidence 799999777766654333322 1122221111 22 233468999999999765432 22233333
Q ss_pred hhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHH--HhhHHHHhhhCCCCCEEEEEe
Q psy8274 74 VKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVR--AKWYPEVRHHCPSTPIILVGT 151 (228)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~--~~~~~~l~~~~~~~piilv~n 151 (228)
.++|+|+|+.+.+-...+. ...+..+.+++++..+.+..+
T Consensus 78 --------------------------------------~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiH 119 (232)
T PF04670_consen 78 --------------------------------------GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIH 119 (232)
T ss_dssp --------------------------------------SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE
T ss_pred --------------------------------------CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 9999999998544333332 144556677889999999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC--CceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG--AVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
|+|+..+....+.+... .+.....+...+ -..++.+|--+ +.+.++|-.+++.++...
T Consensus 120 K~D~l~~~~r~~~~~~~------~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 120 KMDLLSEDEREEIFRDI------QQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp -CCCS-HHHHHHHHHHH------HHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred ecccCCHHHHHHHHHHH------HHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccH
Confidence 99998765544433222 122233333333 24577777666 689999999999887433
No 241
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.16 E-value=1.1e-10 Score=95.97 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=50.8
Q ss_pred CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEE
Q psy8274 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115 (228)
Q Consensus 36 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi 115 (228)
+..+.+.+|||||+..|.......++.+ |+++
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~a------------------------------------------------D~~i 101 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLC------------------------------------------------DGAL 101 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhc------------------------------------------------CeeE
Confidence 4478899999999998776555555555 9999
Q ss_pred EEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 116 ICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 116 ~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
+|+|++++.+.... .++..... .++|+++|+||+|+.
T Consensus 102 lVvD~~~g~~~~t~--~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 102 VVVDAVEGVCVQTE--TVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred EEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCcc
Confidence 99999987666543 22333322 258999999999986
No 242
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.15 E-value=2.8e-10 Score=104.52 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=27.5
Q ss_pred CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
..|+|..||.+|.||+.+++.++..+..+..
T Consensus 248 ~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~ 278 (526)
T PRK00741 248 LTPVFFGSALNNFGVQEFLDAFVEWAPAPQP 278 (526)
T ss_pred eEEEEEeecccCcCHHHHHHHHHHHCCCCCc
Confidence 4689999999999999999999999987653
No 243
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.15 E-value=5.1e-10 Score=96.71 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=38.8
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHH-HHHHHhcC
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFD-EAIRAVLC 214 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~-~l~~~i~~ 214 (228)
..|+++|+||+|+..... . ...+........++.+||+.+.+++++.+ .+.+.+..
T Consensus 214 ~KPvI~VlNK~Dl~~~~~------------~----~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 214 SKPMVIAANKADIPDAEN------------N----ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCcEEEEEEHHHccChHH------------H----HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 369999999999764321 0 01111223335799999999999999998 57777654
No 244
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.15 E-value=1.9e-09 Score=86.03 Aligned_cols=159 Identities=18% Similarity=0.110 Sum_probs=95.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecccee-EEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|.+++..-......|.|.+...+ +.+++. +.+.|.||...-.- . ..+.+.|.
T Consensus 34 NVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv-~--------k~~~e~w~------- 94 (200)
T COG0218 34 NVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKV-P--------KEVKEKWK------- 94 (200)
T ss_pred cccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccC-C--------HHHHHHHH-------
Confidence 7999999999998663333444444443322 355553 77889999753221 0 01111111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
..+.+-+..... ..+++++.|+-.+-.-.+. ++++.+... ++|++||+||+|.....
T Consensus 95 -----~~i~~YL~~R~~--------------L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 95 -----KLIEEYLEKRAN--------------LKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKS 151 (200)
T ss_pred -----HHHHHHHhhchh--------------heEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChh
Confidence 111111111111 1899999998766555444 677777777 89999999999988754
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHh----CCc-eEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEI----GAV-KYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~-~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+..+ .....++.+ ... .++.+|+..+.|++++-..+.+.+..
T Consensus 152 ~~~k-------------~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 152 ERNK-------------QLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHH-------------HHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 3211 112222222 111 17788999999999999888876643
No 245
>CHL00071 tufA elongation factor Tu
Probab=99.14 E-value=5.5e-10 Score=99.92 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=47.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|.|++....-... ..+..+... ++| +|++.||+|+.+..+..+. ...+...+.+..++
T Consensus 100 D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~---------~~~~l~~~l~~~~~~~~ 166 (409)
T CHL00071 100 DGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEELLEL---------VELEVRELLSKYDFPGD 166 (409)
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHH---------HHHHHHHHHHHhCCCCC
Confidence 999999999864322221 333333333 578 7788999999864322111 12345556665543
Q ss_pred -ceEEEecccCCCC
Q psy8274 188 -VKYLECSALTQKG 200 (228)
Q Consensus 188 -~~~~evSa~~~~~ 200 (228)
.+++++||.+|.|
T Consensus 167 ~~~ii~~Sa~~g~n 180 (409)
T CHL00071 167 DIPIVSGSALLALE 180 (409)
T ss_pred cceEEEcchhhccc
Confidence 6899999999874
No 246
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.14 E-value=7.1e-10 Score=101.91 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=27.3
Q ss_pred CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
..|.|.-||.+|.||+.+++.++..+..+.+
T Consensus 249 ~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~ 279 (527)
T TIGR00503 249 MTPVFFGTALGNFGVDHFLDGLLQWAPKPEA 279 (527)
T ss_pred eeEEEEeecccCccHHHHHHHHHHHCCCCcc
Confidence 4678999999999999999999999887653
No 247
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.14 E-value=3.7e-10 Score=95.50 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=30.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++...... . .++...... ++|+++++||+|+...
T Consensus 96 D~~IlVvda~~g~~~~~-~-~i~~~~~~~--~~P~iivvNK~D~~~a 138 (267)
T cd04169 96 DSAVMVIDAAKGVEPQT-R-KLFEVCRLR--GIPIITFINKLDREGR 138 (267)
T ss_pred CEEEEEEECCCCccHHH-H-HHHHHHHhc--CCCEEEEEECCccCCC
Confidence 99999999987543221 1 344333333 6899999999998764
No 248
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.10 E-value=4.5e-10 Score=82.91 Aligned_cols=67 Identities=27% Similarity=0.374 Sum_probs=48.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+++++||+.++..++..+ |...+...+ .+.|.++++||.|+.+. +.+..+++. .+
T Consensus 48 ~~~~~v~~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~------------~~~~~~~~~---------~~ 103 (124)
T smart00010 48 DVVLQCWRVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEE------------RQVATEEGL---------EF 103 (124)
T ss_pred CEEEEEEEccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhh------------CcCCHHHHH---------HH
Confidence 999999999999998754 666665544 36889999999998542 223333333 35
Q ss_pred EEecccCCCCHH
Q psy8274 191 LECSALTQKGLK 202 (228)
Q Consensus 191 ~evSa~~~~~v~ 202 (228)
+++|++++.|+.
T Consensus 104 ~~~s~~~~~~~~ 115 (124)
T smart00010 104 AETSAKTPEEGE 115 (124)
T ss_pred HHHhCCCcchhh
Confidence 567889999884
No 249
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.09 E-value=2e-09 Score=102.15 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=31.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++....... .++..+... ++|+++++||+|+...
T Consensus 100 D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 100 DGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA 142 (689)
T ss_pred CEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 999999999986555433 333344433 6899999999999753
No 250
>KOG0090|consensus
Probab=99.09 E-value=3.3e-10 Score=90.70 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=93.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
++|||+|..++..+.+.+.+....+. .....+... .+.+.|.||+.+.+.-...++...
T Consensus 48 dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~----------------- 106 (238)
T KOG0090|consen 48 DSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHN----------------- 106 (238)
T ss_pred CCCceeeeeehhcCCccCeeeeeccc--eeeEeecCc--ceEEEeCCCcHHHHHHHHHHcccc-----------------
Confidence 68999999999998654332222211 222222222 278899999987764333333310
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC-ChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV-NPASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt-~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~ 156 (228)
.++-+++||.|.. ...-...+.+-+|..+...+ ..+|+++++||.|+.
T Consensus 107 ----------------------------~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 107 ----------------------------YSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred ----------------------------ccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 0118999999974 34444555534455555442 368999999999987
Q ss_pred Cc--hHHHHHHhhccCc----------cccHH----------HHHH--HHHHh-CCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 157 DD--KETIEKLKEKKLA----------PITYP----------QGLS--MAKEI-GAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 157 ~~--~~~~~~~~~~~~~----------~v~~~----------~~~~--~~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.. .+.++..+++... .+..+ ++.. |..-. .-+.|.+.|++++ +++++-+|+.+.
T Consensus 159 tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 159 TAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 54 3344433333211 11111 1111 11111 1156999999998 899999998765
No 251
>KOG1707|consensus
Probab=99.09 E-value=1.3e-09 Score=98.41 Aligned_cols=152 Identities=23% Similarity=0.301 Sum_probs=111.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccce-eEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||.|++.|++..+.+.+.++....|.. .+...|+..++.+.|++-. ....+...
T Consensus 435 ~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k--------------------- 492 (625)
T KOG1707|consen 435 NCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK--------------------- 492 (625)
T ss_pred cCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc---------------------
Confidence 689999999999999988777777555543 3455677778888887754 22221111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
. -.||++.++||++++.||..+. ..++..... ...|+++|++|+|+....
T Consensus 493 ---------------------------e-~~cDv~~~~YDsS~p~sf~~~a-~v~~~~~~~-~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 493 ---------------------------E-AACDVACLVYDSSNPRSFEYLA-EVYNKYFDL-YKIPCLMVATKADLDEVP 542 (625)
T ss_pred ---------------------------c-ceeeeEEEecccCCchHHHHHH-HHHHHhhhc-cCCceEEEeeccccchhh
Confidence 1 2349999999999999999987 444433333 579999999999998753
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
. + .... -..+++++++.+...+|+++... .++|..+......+..
T Consensus 543 Q----------~-~~iq-pde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph~ 587 (625)
T KOG1707|consen 543 Q----------R-YSIQ-PDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPHI 587 (625)
T ss_pred h----------c-cCCC-hHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCCc
Confidence 1 1 2222 27899999988889999996444 8999999998887763
No 252
>PRK00049 elongation factor Tu; Reviewed
Probab=99.09 E-value=1.9e-09 Score=96.09 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=52.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEE-EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|.|++.+..-... .++..+... ++|.+ ++.||+|+....+..+. -..+...+....++
T Consensus 100 D~~llVVDa~~g~~~qt~--~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~---------~~~~i~~~l~~~~~~~~ 166 (396)
T PRK00049 100 DGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLEL---------VEMEVRELLSKYDFPGD 166 (396)
T ss_pred CEEEEEEECCCCCchHHH--HHHHHHHHc--CCCEEEEEEeecCCcchHHHHHH---------HHHHHHHHHHhcCCCcc
Confidence 999999999865332221 333444433 57876 57899999753221111 11234444444432
Q ss_pred -ceEEEecccCCC----------CHHHHHHHHHHHh
Q psy8274 188 -VKYLECSALTQK----------GLKTVFDEAIRAV 212 (228)
Q Consensus 188 -~~~~evSa~~~~----------~v~~lf~~l~~~i 212 (228)
.+++++||+++. ++..+++.+...+
T Consensus 167 ~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 167 DTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 689999999875 4556666666543
No 253
>KOG1145|consensus
Probab=99.07 E-value=1.9e-09 Score=96.75 Aligned_cols=137 Identities=20% Similarity=0.324 Sum_probs=91.2
Q ss_pred ChhhhHHhhhhCCCCCCCCceeeeccc-eeEEE-cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 3 GKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 3 GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||+..|-+..........+..... ..+.+ +|+ .+.+.|||||..|..++..-..-+
T Consensus 165 GKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~--~iTFLDTPGHaAF~aMRaRGA~vt----------------- 225 (683)
T KOG1145|consen 165 GKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGK--SITFLDTPGHAAFSAMRARGANVT----------------- 225 (683)
T ss_pred ChhhHHHHHhhCceehhhcCCccceeceEEEecCCCC--EEEEecCCcHHHHHHHHhccCccc-----------------
Confidence 999999999877765443333322221 22222 554 566789999998887765433333
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~ 156 (228)
|.+++|..++| +.+.+ .|.+.. .++|+|++.||+|..
T Consensus 226 -------------------------------DIvVLVVAadDGVmpQT~E--------aIkhAk~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 226 -------------------------------DIVVLVVAADDGVMPQTLE--------AIKHAKSANVPIVVAINKIDKP 266 (683)
T ss_pred -------------------------------cEEEEEEEccCCccHhHHH--------HHHHHHhcCCCEEEEEeccCCC
Confidence 99999999987 33333 344433 389999999999976
Q ss_pred CchHHHHHHhhccCccccHHHHHHH-------HHHh-CCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSM-------AKEI-GAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..+ .+.+.+- .+.+ |-.+.+++||++|.|++.|-+.++.+.
T Consensus 267 ~a~---------------pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 267 GAN---------------PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred CCC---------------HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 532 1222221 1223 336799999999999999999887754
No 254
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.06 E-value=2.3e-09 Score=96.78 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=68.5
Q ss_pred CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEE
Q psy8274 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115 (228)
Q Consensus 36 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi 115 (228)
.....+.++|+||+++|.......+..+ |++|
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~a------------------------------------------------D~aI 113 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQA------------------------------------------------DCAV 113 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhc------------------------------------------------cEEE
Confidence 3456788899999988865444444444 9999
Q ss_pred EEEecCChhhHH-------HHHHhhHHHHhhhCCCC-CEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC
Q psy8274 116 ICFSLVNPASFE-------NVRAKWYPEVRHHCPST-PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA 187 (228)
Q Consensus 116 ~v~Dvt~~~s~~-------~~~~~~~~~l~~~~~~~-piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 187 (228)
+|+|+++. +|+ ...++| ..+.. .++ ++|++.||+|+.+.....+. -....++...+++..|+
T Consensus 114 lVVda~~G-~~e~g~~~~~qT~eh~-~~~~~--~gi~~iIV~vNKmD~~~~~~~~~~------~~~i~~ei~~~l~~~g~ 183 (447)
T PLN00043 114 LIIDSTTG-GFEAGISKDGQTREHA-LLAFT--LGVKQMICCCNKMDATTPKYSKAR------YDEIVKEVSSYLKKVGY 183 (447)
T ss_pred EEEEcccC-ceecccCCCchHHHHH-HHHHH--cCCCcEEEEEEcccCCchhhhHHH------HHHHHHHHHHHHHHcCC
Confidence 99999873 232 112122 12222 256 47888999998732110000 00123456777777763
Q ss_pred ----ceEEEecccCCCCHHH
Q psy8274 188 ----VKYLECSALTQKGLKT 203 (228)
Q Consensus 188 ----~~~~evSa~~~~~v~~ 203 (228)
.+|+++||++|+|+.+
T Consensus 184 ~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 184 NPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CcccceEEEEeccccccccc
Confidence 5799999999999854
No 255
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.06 E-value=6.7e-09 Score=88.19 Aligned_cols=150 Identities=16% Similarity=0.149 Sum_probs=96.5
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
+||||||++.+++..- .++|.-|........+..+| .++|+.|+||--.-.+.-.. ++ .+.
T Consensus 73 svGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~g--rG-~~v------------- 134 (365)
T COG1163 73 SVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRG--RG-RQV------------- 134 (365)
T ss_pred CccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCC--Cc-cee-------------
Confidence 5899999999997654 56788787777777777777 57788999974221111100 00 000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh-HHHHHHhh-------------------------
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS-FENVRAKW------------------------- 133 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s-~~~~~~~~------------------------- 133 (228)
....+++|.+++|.|+..+.+ .+.+.+.+
T Consensus 135 -------------------------lsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~ 189 (365)
T COG1163 135 -------------------------LSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIR 189 (365)
T ss_pred -------------------------eeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEE
Confidence 001233499999999986665 43333211
Q ss_pred ------------------HHH----------------------HhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccc
Q psy8274 134 ------------------YPE----------------------VRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPI 173 (228)
Q Consensus 134 ------------------~~~----------------------l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 173 (228)
+.+ +...+-.+|.++|.||.|+...
T Consensus 190 i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--------------- 254 (365)
T COG1163 190 INGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--------------- 254 (365)
T ss_pred EecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---------------
Confidence 111 1111124699999999998873
Q ss_pred cHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++...+.+. ...+.+||+.+.|++++.+.+.+.+-
T Consensus 255 --e~~~~l~~~---~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 255 --EELERLARK---PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred --HHHHHHHhc---cceEEEecccCCCHHHHHHHHHHhhC
Confidence 234444443 36899999999999999999998763
No 256
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.05 E-value=1.6e-09 Score=96.90 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=47.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHHHHhCC--c
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMAKEIGA--V 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ 188 (228)
|++++|+|+.....-.... .| ..+... ...++++|.||+|+.+... ..+ ...++...+.+.+++ .
T Consensus 105 D~allVVda~~G~~~qt~~-~~-~~~~~~-~~~~iivviNK~D~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~ 172 (406)
T TIGR02034 105 DLAVLLVDARKGVLEQTRR-HS-YIASLL-GIRHVVLAVNKMDLVDYDEEVFE---------NIKKDYLAFAEQLGFRDV 172 (406)
T ss_pred CEEEEEEECCCCCccccHH-HH-HHHHHc-CCCcEEEEEEecccccchHHHHH---------HHHHHHHHHHHHcCCCCc
Confidence 9999999987643221111 11 122222 2346889999999975321 100 011223344444443 4
Q ss_pred eEEEecccCCCCHHH
Q psy8274 189 KYLECSALTQKGLKT 203 (228)
Q Consensus 189 ~~~evSa~~~~~v~~ 203 (228)
+++++||++|.|+++
T Consensus 173 ~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 173 TFIPLSALKGDNVVS 187 (406)
T ss_pred cEEEeecccCCCCcc
Confidence 699999999999986
No 257
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.05 E-value=7.2e-10 Score=93.84 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=29.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|++++|.|+++...-... .++..+... ++|++++.||+|+.+
T Consensus 89 D~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 89 DGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred CEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 999999999875332221 334444444 689999999999875
No 258
>PRK12740 elongation factor G; Reviewed
Probab=99.04 E-value=9.3e-10 Score=104.22 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=31.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++........ ++..+... +.|+++|+||+|+...
T Consensus 85 D~vllvvd~~~~~~~~~~~--~~~~~~~~--~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 85 DGAVVVVCAVGGVEPQTET--VWRQAEKY--GVPRIIFVNKMDRAGA 127 (668)
T ss_pred CeEEEEEeCCCCcCHHHHH--HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 9999999999876665442 33333333 6899999999998743
No 259
>PLN03127 Elongation factor Tu; Provisional
Probab=99.04 E-value=3.8e-09 Score=95.37 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=51.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG---- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 186 (228)
|++++|.|+++...-... +.+..+... ++| +|++.||+|+.......+. -..+...+....+
T Consensus 149 D~allVVda~~g~~~qt~--e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~---------i~~~i~~~l~~~~~~~~ 215 (447)
T PLN03127 149 DGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVVFLNKVDVVDDEELLEL---------VEMELRELLSFYKFPGD 215 (447)
T ss_pred CEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHH---------HHHHHHHHHHHhCCCCC
Confidence 999999999765332221 333344433 688 5788999999853221111 0112333333332
Q ss_pred CceEEEeccc---CCCC-------HHHHHHHHHHHhc
Q psy8274 187 AVKYLECSAL---TQKG-------LKTVFDEAIRAVL 213 (228)
Q Consensus 187 ~~~~~evSa~---~~~~-------v~~lf~~l~~~i~ 213 (228)
.++++++|+. +|.| +.++++.+...+.
T Consensus 216 ~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 216 EIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred cceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2578888876 4555 6777777766554
No 260
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.04 E-value=1.5e-09 Score=98.74 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=46.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHHHHhC---C
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMAKEIG---A 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~---~ 187 (228)
|++++|+|++....-.... .+ ..+... ...|++||.||+|+.+... ..+. ...+...+.+.++ .
T Consensus 132 D~allVVDa~~G~~~qt~~-~~-~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~~---------i~~~l~~~~~~~~~~~~ 199 (474)
T PRK05124 132 DLAILLIDARKGVLDQTRR-HS-FIATLL-GIKHLVVAVNKMDLVDYSEEVFER---------IREDYLTFAEQLPGNLD 199 (474)
T ss_pred CEEEEEEECCCCccccchH-HH-HHHHHh-CCCceEEEEEeeccccchhHHHHH---------HHHHHHHHHHhcCCCCC
Confidence 9999999997643211111 11 112212 1257899999999975321 1110 1112333343333 2
Q ss_pred ceEEEecccCCCCHHHH
Q psy8274 188 VKYLECSALTQKGLKTV 204 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~l 204 (228)
.+++++||++|.|++++
T Consensus 200 ~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 200 IRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ceEEEEEeecCCCcccc
Confidence 57999999999999864
No 261
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.01 E-value=1.9e-09 Score=91.06 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=31.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++....... ..+..+... ++|+++++||+|+...
T Consensus 89 D~~i~Vvd~~~g~~~~~~--~~~~~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 89 DAALVVVSAQSGVEVGTE--KLWEFADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCccCCC
Confidence 999999999987655433 223333333 6899999999998864
No 262
>PLN03126 Elongation factor Tu; Provisional
Probab=98.97 E-value=2.5e-09 Score=97.16 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=47.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG---- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 186 (228)
|++++|+|+++...-... +++..+... ++| ++++.||+|+.+..+..+. -.++...+.+..|
T Consensus 169 D~ailVVda~~G~~~qt~--e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~---------i~~~i~~~l~~~g~~~~ 235 (478)
T PLN03126 169 DGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLEL---------VELEVRELLSSYEFPGD 235 (478)
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEecccccCHHHHHHH---------HHHHHHHHHHhcCCCcC
Confidence 999999999875433222 333334333 677 7788999999764321111 1124555555543
Q ss_pred CceEEEecccCCCC
Q psy8274 187 AVKYLECSALTQKG 200 (228)
Q Consensus 187 ~~~~~evSa~~~~~ 200 (228)
..+++++|+.++.+
T Consensus 236 ~~~~vp~Sa~~g~n 249 (478)
T PLN03126 236 DIPIISGSALLALE 249 (478)
T ss_pred cceEEEEEcccccc
Confidence 25799999998853
No 263
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.97 E-value=2.8e-09 Score=100.37 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=47.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch-HHHHHHhhccCccccHHHHHHHHHHhCC--c
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK-ETIEKLKEKKLAPITYPQGLSMAKEIGA--V 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ 188 (228)
|++++|+|++....-... ..+..+... ...|++||.||+|+.+.. +..+. ...+...+.+.+++ .
T Consensus 129 D~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~---------i~~~i~~~~~~~~~~~~ 196 (632)
T PRK05506 129 DLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDE---------IVADYRAFAAKLGLHDV 196 (632)
T ss_pred CEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchhHHHHH---------HHHHHHHHHHHcCCCCc
Confidence 999999999764322111 111122222 235788999999997521 11110 11233344455553 4
Q ss_pred eEEEecccCCCCHHH
Q psy8274 189 KYLECSALTQKGLKT 203 (228)
Q Consensus 189 ~~~evSa~~~~~v~~ 203 (228)
+++++||++|.|+.+
T Consensus 197 ~iipiSA~~g~ni~~ 211 (632)
T PRK05506 197 TFIPISALKGDNVVT 211 (632)
T ss_pred cEEEEecccCCCccc
Confidence 699999999999974
No 264
>KOG1191|consensus
Probab=98.95 E-value=4.5e-09 Score=93.41 Aligned_cols=163 Identities=22% Similarity=0.185 Sum_probs=105.2
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|.|++... ..+...|..|.....+.++|. .+.+.||+|-..- .
T Consensus 278 NvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~--~v~L~DTAGiRe~-------------------------~ 330 (531)
T KOG1191|consen 278 NVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGV--PVRLSDTAGIREE-------------------------S 330 (531)
T ss_pred CCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCe--EEEEEeccccccc-------------------------c
Confidence 7999999999998764 445556777777888888895 5566799995430 0
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEec--CChhhHHHHHHhhHHHHhhh-------CCCCCEEEE
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL--VNPASFENVRAKWYPEVRHH-------CPSTPIILV 149 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dv--t~~~s~~~~~~~~~~~l~~~-------~~~~piilv 149 (228)
....+.++++..+....++ |++++|+|. ++-++-..+. ..+.....- -.+.|++++
T Consensus 331 ~~~iE~~gI~rA~k~~~~a--------------dvi~~vvda~~~~t~sd~~i~-~~l~~~~~g~~~~~~~~~~~~~i~~ 395 (531)
T KOG1191|consen 331 NDGIEALGIERARKRIERA--------------DVILLVVDAEESDTESDLKIA-RILETEGVGLVVIVNKMEKQRIILV 395 (531)
T ss_pred CChhHHHhHHHHHHHHhhc--------------CEEEEEecccccccccchHHH-HHHHHhccceEEEeccccccceEEE
Confidence 1123455666666666666 999999999 4444444433 333332221 124799999
Q ss_pred EeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH--hC-CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 150 GTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE--IG-AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.||+|+...-+ ...... ..+... ++ .....++|+++++|++.+...+...+.....
T Consensus 396 ~nk~D~~s~~~-----------~~~~~~-~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 396 ANKSDLVSKIP-----------EMTKIP-VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred echhhccCccc-----------cccCCc-eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 99999987521 122110 011111 11 1346679999999999999999988876544
No 265
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.94 E-value=8.7e-09 Score=93.09 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=45.9
Q ss_pred ceEEEEEecCChh---hHH---HHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCc---hHHHHHHhhccCccccHHHHHHH
Q psy8274 112 DVFQICFSLVNPA---SFE---NVRAKWYPEVRHHCPSTP-IILVGTKLDLRDD---KETIEKLKEKKLAPITYPQGLSM 181 (228)
Q Consensus 112 d~vi~v~Dvt~~~---s~~---~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~---~~~~~~~~~~~~~~v~~~~~~~~ 181 (228)
|++++|.|+++.. .|. ...++| ..+... .+| +|++.||+|+... ....+ ...++...+
T Consensus 110 D~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~~--gi~~iiv~vNKmD~~~~~~~~~~~~---------~i~~~i~~~ 177 (446)
T PTZ00141 110 DVAILVVASTAGEFEAGISKDGQTREHA-LLAFTL--GVKQMIVCINKMDDKTVNYSQERYD---------EIKKEVSAY 177 (446)
T ss_pred CEEEEEEEcCCCceecccCCCccHHHHH-HHHHHc--CCCeEEEEEEccccccchhhHHHHH---------HHHHHHHHH
Confidence 9999999998642 110 111122 223222 565 6789999995421 11111 112234444
Q ss_pred HHHhCC----ceEEEecccCCCCHHH
Q psy8274 182 AKEIGA----VKYLECSALTQKGLKT 203 (228)
Q Consensus 182 ~~~~~~----~~~~evSa~~~~~v~~ 203 (228)
....|+ ++++++|+.+|+|+.+
T Consensus 178 l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 178 LKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHhcCCCcccceEEEeecccCCCccc
Confidence 444443 6799999999999964
No 266
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.91 E-value=6.1e-09 Score=94.15 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=55.4
Q ss_pred ceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH--hCCc
Q psy8274 112 DVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE--IGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~ 188 (228)
|++++|.|++++. .-+-.+ ++ ..+. ...-.|+|+|.||+|+.+.....+ ..++...+.+. ....
T Consensus 142 D~alLVVda~~g~~~~qT~e-hl-~i~~-~lgi~~iIVvlNKiDlv~~~~~~~----------~~~ei~~~l~~~~~~~~ 208 (460)
T PTZ00327 142 DAALLLIAANESCPQPQTSE-HL-AAVE-IMKLKHIIILQNKIDLVKEAQAQD----------QYEEIRNFVKGTIADNA 208 (460)
T ss_pred CEEEEEEECCCCccchhhHH-HH-HHHH-HcCCCcEEEEEecccccCHHHHHH----------HHHHHHHHHHhhccCCC
Confidence 9999999998641 111111 22 1222 222356899999999986432111 11222223222 1236
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+++++||++|.|+++|++.+...+..+
T Consensus 209 ~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 209 PIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred eEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 899999999999999999998766543
No 267
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.86 E-value=6.4e-08 Score=77.94 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=91.4
Q ss_pred CCChhhhHHhhhhCCCC-CCC-C-ceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEY-I-PTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~-~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+|.+++.... ... . +...........+++. .+.++||||-...... ...+..
T Consensus 10 g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~--------~~~~~~-------- 71 (196)
T cd01852 10 GAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVS--------PEQLSK-------- 71 (196)
T ss_pred CCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCC--------hHHHHH--------
Confidence 89999999999976532 221 1 1111112223344554 6788999997654210 000110
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEeCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLD 154 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~nK~D 154 (228)
+..+...... ...|++++|.|+.+ .+-.+. ..+..+.+... -.++++|.|+.|
T Consensus 72 ---------------~i~~~~~~~~------~g~~~illVi~~~~-~t~~d~--~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 72 ---------------EIVRCLSLSA------PGPHAFLLVVPLGR-FTEEEE--QAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred ---------------HHHHHHHhcC------CCCEEEEEEEECCC-cCHHHH--HHHHHHHHHhChHhHhcEEEEEECcc
Confidence 1111111111 12299999999876 333222 45556655543 257888899999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEec-----ccCCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECS-----ALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evS-----a~~~~~v~~lf~~l~~~i~~ 214 (228)
.....+. +.... -.....+.+.+..| ..|+..+ +..+.++++|++.+-+.+..
T Consensus 128 ~l~~~~~-~~~~~-----~~~~~l~~l~~~c~-~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 128 DLEGGTL-EDYLE-----NSCEALKRLLEKCG-GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred ccCCCcH-HHHHH-----hccHHHHHHHHHhC-CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 7654321 11111 11245666777766 3565555 44577899999988887764
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.85 E-value=1.2e-07 Score=84.37 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=36.1
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHH-HHHHHHHHhc
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKT-VFDEAIRAVL 213 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~-lf~~l~~~i~ 213 (228)
.+|+++|+||.|+..... ....+.+. +...++.+||+.+.++++ +.+.+++.+.
T Consensus 217 ~KPvI~VlNK~D~~~~~~----------------~l~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp 271 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE----------------NIERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIP 271 (396)
T ss_pred CCCEEEEEEchhcccchH----------------HHHHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCC
Confidence 379999999999764211 11122222 445799999999999999 5566555443
No 269
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.84 E-value=2.1e-08 Score=73.75 Aligned_cols=49 Identities=27% Similarity=0.251 Sum_probs=30.5
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
|+|||||+|++++... .....++........+.+++..+ .++||||-..
T Consensus 9 ~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~ 59 (116)
T PF01926_consen 9 NVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGIND 59 (116)
T ss_dssp TSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSS
T ss_pred CCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcc
Confidence 7999999999997543 22233333222223445566544 6899999543
No 270
>KOG0705|consensus
Probab=98.84 E-value=7.4e-09 Score=92.96 Aligned_cols=150 Identities=23% Similarity=0.329 Sum_probs=112.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
++|||+|++||+++.|..+ ..+.+..|.+.+.++++...+.+.|.+|... ..+....
T Consensus 40 ~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wv----------------- 96 (749)
T KOG0705|consen 40 QSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWV----------------- 96 (749)
T ss_pred cCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhc-----------------
Confidence 4799999999999998744 3445667888999999999999999998432 1122223
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++||||.+.|..+|+.+. .+.-.+..+ ...+|+++++++.-....
T Consensus 97 -------------------------------davIfvf~~~d~~s~q~v~-~l~~~l~~~r~r~~i~l~lvgtqd~iS~~ 144 (749)
T KOG0705|consen 97 -------------------------------DAVVFVFSVEDEQSFQAVQ-ALAHEMSSYRNISDLPLILVGTQDHISAK 144 (749)
T ss_pred -------------------------------cceEEEEEeccccCHHHHH-HHHhhcccccccccchHHhhcCcchhhcc
Confidence 9999999999999999886 443334433 246899999987644433
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. .+.+...++..++-.+....+|+.++.+|.+++.+|.++..++...
T Consensus 145 ~----------~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 145 R----------PRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred c----------ccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 2 2566666666666665545899999999999999999999877654
No 271
>PRK12739 elongation factor G; Reviewed
Probab=98.82 E-value=3.6e-08 Score=93.70 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=26.2
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.|.+..||.++.|++.+++.+...+..+.
T Consensus 251 ~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 281 (691)
T PRK12739 251 EFFPVLCGSAFKNKGVQPLLDAVVDYLPSPL 281 (691)
T ss_pred CEEEEEeccccCCccHHHHHHHHHHHCCChh
Confidence 3457888899999999999999999887654
No 272
>PRK00098 GTPase RsgA; Reviewed
Probab=98.77 E-value=2.8e-08 Score=85.37 Aligned_cols=84 Identities=24% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
++|.+++|+|++++.++....+.|+..+... ++|+++|+||+||.+... ...+.....+.++ .+
T Consensus 80 niD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~-------------~~~~~~~~~~~~g-~~ 143 (298)
T PRK00098 80 NVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLE-------------EARELLALYRAIG-YD 143 (298)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHH-------------HHHHHHHHHHHCC-Ce
Confidence 4499999999999887766655887776543 789999999999974311 1122344455677 48
Q ss_pred EEEecccCCCCHHHHHHHHH
Q psy8274 190 YLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~ 209 (228)
++++||+++.|+++++..+.
T Consensus 144 v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 144 VLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred EEEEeCCCCccHHHHHhhcc
Confidence 99999999999999998763
No 273
>PRK00007 elongation factor G; Reviewed
Probab=98.76 E-value=1.2e-07 Score=90.09 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=26.8
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.|++..||.++.||+.+++.++..+..+.
T Consensus 253 ~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 283 (693)
T PRK00007 253 EIVPVLCGSAFKNKGVQPLLDAVVDYLPSPL 283 (693)
T ss_pred cEEEEEecccccCcCHHHHHHHHHHHCCChh
Confidence 4467888899999999999999999888764
No 274
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.75 E-value=2.7e-08 Score=86.18 Aligned_cols=151 Identities=18% Similarity=0.224 Sum_probs=98.9
Q ss_pred CCCCCCceeeeccceeEEE--------cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccc
Q psy8274 16 FPGEYIPTVFDNYSANVMV--------DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGL 87 (228)
Q Consensus 16 ~~~~~~~t~~~~~~~~~~~--------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (228)
+.++|.||..|.+..+... .-..+.+.+||++|+...+..|..++.++
T Consensus 130 ~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v------------------------ 185 (317)
T cd00066 130 SDPDYIPTEQDILRARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDV------------------------ 185 (317)
T ss_pred hCCCCCCChhHheeeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCC------------------------
Confidence 3457888887665443322 22357889999999999999999999988
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh----------hhHHHHHHhhHHHHhhh-C-CCCCEEEEEeCCCC
Q psy8274 88 KTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP----------ASFENVRAKWYPEVRHH-C-PSTPIILVGTKLDL 155 (228)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~----------~s~~~~~~~~~~~l~~~-~-~~~piilv~nK~Dl 155 (228)
+++++|.|.++- ..+.... ..+..+-+. . .+.|++|++||.|+
T Consensus 186 ------------------------~~iifvv~lsd~d~~~~e~~~~nrl~esl-~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 186 ------------------------TAIIFVVALSEYDQVLFEDESTNRMQESL-NLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred ------------------------CEEEEEEEchhcccccccCCcchHHHHHH-HHHHHHHhCccccCCCEEEEccChHH
Confidence 999999999873 3344444 333333332 2 47899999999997
Q ss_pred CCchH----HHHHHhhccCccccHHHHHHHHHHh---------CCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 156 RDDKE----TIEKLKEKKLAPITYPQGLSMAKEI---------GAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 156 ~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
....- ...-+.......-+.+++..|.+.. ..+....++|.+-.+++.+|..+...|++.
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 65321 0011111111123455565555541 123456788998899999999999888764
No 275
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.75 E-value=1.4e-08 Score=96.93 Aligned_cols=105 Identities=17% Similarity=0.072 Sum_probs=63.7
Q ss_pred CCChhhhHHhhhhC---------------CCCCC---CCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccc
Q psy8274 1 AVGKTCLLISYTTN---------------AFPGE---YIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61 (228)
Q Consensus 1 gvGKTsli~~~~~~---------------~~~~~---~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 61 (228)
|+|||||+.+|+.. .+... +..|+.... ......++..+.+.+|||||+.+|.......+.
T Consensus 29 ~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~ 108 (720)
T TIGR00490 29 DHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMR 108 (720)
T ss_pred CCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHH
Confidence 68999999999853 11111 112332211 222335666788999999999876533222233
Q ss_pred cccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC
Q psy8274 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~ 141 (228)
.+ |++++|+|+.+....... .....+..
T Consensus 109 ~a------------------------------------------------D~~llVvda~~g~~~~t~--~~~~~~~~-- 136 (720)
T TIGR00490 109 AV------------------------------------------------DGAIVVVCAVEGVMPQTE--TVLRQALK-- 136 (720)
T ss_pred hc------------------------------------------------CEEEEEEecCCCCCccHH--HHHHHHHH--
Confidence 33 999999999874333222 12222222
Q ss_pred CCCCEEEEEeCCCCCC
Q psy8274 142 PSTPIILVGTKLDLRD 157 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~ 157 (228)
.+.|+++++||+|+..
T Consensus 137 ~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 137 ENVKPVLFINKVDRLI 152 (720)
T ss_pred cCCCEEEEEEChhccc
Confidence 2578889999999864
No 276
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.72 E-value=4.9e-08 Score=78.16 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=55.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHH-----HHhC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMA-----KEIG 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~ 186 (228)
|++++|+|++++.. .|...+.....+.|+++|+||+|+.... ........+. +..+
T Consensus 36 d~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 36 ALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLPKD-------------KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred cEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCCCC-------------CCHHHHHHHHHHHHHhhcC
Confidence 99999999987542 2222332223468999999999997531 2222223332 2223
Q ss_pred --CceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 187 --AVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 187 --~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
...++++||++|.|+++++..+...+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 136899999999999999999988763
No 277
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.71 E-value=7.4e-08 Score=82.32 Aligned_cols=83 Identities=27% Similarity=0.250 Sum_probs=63.1
Q ss_pred CCceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 110 RCDVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
++|.+++|+|++++. ++..+. .|+..+... ++|+++|+||+||..... ......+...++ .
T Consensus 78 nvD~vllV~d~~~p~~s~~~ld-r~L~~~~~~--~ip~iIVlNK~DL~~~~~--------------~~~~~~~~~~~g-~ 139 (287)
T cd01854 78 NVDQLVIVVSLNEPFFNPRLLD-RYLVAAEAA--GIEPVIVLTKADLLDDEE--------------EELELVEALALG-Y 139 (287)
T ss_pred eCCEEEEEEEcCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEEHHHCCChHH--------------HHHHHHHHHhCC-C
Confidence 449999999999988 888776 788777654 689999999999976411 111223334467 5
Q ss_pred eEEEecccCCCCHHHHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~ 210 (228)
+++++||+++.|+++++..+..
T Consensus 140 ~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 140 PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred eEEEEECCCCccHHHHHhhhcc
Confidence 8999999999999999887653
No 278
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.70 E-value=4.9e-08 Score=81.37 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=60.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch-----------HHHHHHhhccCccccHHHHHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK-----------ETIEKLKEKKLAPITYPQGLS 180 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~v~~~~~~~ 180 (228)
|.++.+.|..|+.==.+. +++..+....-+.|++++.|.+|...+. ..++++.+. -.+...+
T Consensus 119 DLvL~l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-----k~~~~~~ 191 (296)
T COG3596 119 DLVLWLIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-----KAEALGR 191 (296)
T ss_pred cEEEEeccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-----HHHHHHH
Confidence 989999998876432222 4444554444458999999999987652 122221111 0112334
Q ss_pred HHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 181 ~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
++++ .-|++.+|...+.|++++...++..+..
T Consensus 192 ~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 192 LFQE--VKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHhh--cCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 4444 2367888889999999999999998764
No 279
>PRK12289 GTPase RsgA; Reviewed
Probab=98.70 E-value=9e-08 Score=83.86 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=62.1
Q ss_pred CCCCceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC
Q psy8274 108 KKRCDVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG 186 (228)
Q Consensus 108 ~~~~d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 186 (228)
..++|.+++|+|++++. ....+. .|+..... .++|++||+||+||..... ........+.+|
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~~--~~ip~ILVlNK~DLv~~~~--------------~~~~~~~~~~~g 149 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLS-RFLVKAES--TGLEIVLCLNKADLVSPTE--------------QQQWQDRLQQWG 149 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEEchhcCChHH--------------HHHHHHHHHhcC
Confidence 45569999999999876 343444 67665533 3799999999999975421 112223335678
Q ss_pred CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+ .++++||+++.|+++++..+...
T Consensus 150 ~-~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 150 Y-QPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred C-eEEEEEcCCCCCHHHHhhhhccc
Confidence 4 89999999999999999888643
No 280
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.70 E-value=2.5e-08 Score=73.54 Aligned_cols=78 Identities=24% Similarity=0.201 Sum_probs=59.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|++++|-.+++++|-..- -+.... ..|+|=|.+|.||.++ -+.+...+|.++.|.-++|
T Consensus 66 dvi~~v~~and~~s~f~p------~f~~~~-~k~vIgvVTK~DLaed--------------~dI~~~~~~L~eaGa~~IF 124 (148)
T COG4917 66 DVIIYVHAANDPESRFPP------GFLDIG-VKKVIGVVTKADLAED--------------ADISLVKRWLREAGAEPIF 124 (148)
T ss_pred ceeeeeecccCccccCCc------cccccc-ccceEEEEecccccch--------------HhHHHHHHHHHHcCCcceE
Confidence 999999999998764332 111111 3568988999999964 2334567888889988999
Q ss_pred EecccCCCCHHHHHHHHHH
Q psy8274 192 ECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~ 210 (228)
++|+.++.||++++.-+..
T Consensus 125 ~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 125 ETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred EEeccCcccHHHHHHHHHh
Confidence 9999999999999988764
No 281
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.68 E-value=1.6e-07 Score=76.11 Aligned_cols=80 Identities=23% Similarity=0.164 Sum_probs=53.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE--EEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH-hCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI--ILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE-IGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi--ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~ 188 (228)
+.++.|+|+++.++... .+. +++.. ++++||+|+.+..+ ...+......+. ....
T Consensus 114 ~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~------------~~~~~~~~~~~~~~~~~ 171 (199)
T TIGR00101 114 DLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVG------------ADLGVMERDAKKMRGEK 171 (199)
T ss_pred CcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhcccccc------------ccHHHHHHHHHHhCCCC
Confidence 88999999997655321 111 13333 78899999985311 112222333333 2336
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+++++||++|.|++++|+++.+..+
T Consensus 172 ~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 172 PFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 8999999999999999999997654
No 282
>PRK12288 GTPase RsgA; Reviewed
Probab=98.67 E-value=1.2e-07 Score=82.89 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=65.7
Q ss_pred CCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 109 KRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
-|+|.+++||++++..++..+. .|+..... .++|++||+||+||...... ....+.....+.+| .
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~--~~i~~VIVlNK~DL~~~~~~-----------~~~~~~~~~y~~~g-~ 183 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIID-RYLVACET--LGIEPLIVLNKIDLLDDEGR-----------AFVNEQLDIYRNIG-Y 183 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEECccCCCcHHH-----------HHHHHHHHHHHhCC-C
Confidence 3469999999999999998887 88775543 36899999999999764210 01122233345567 4
Q ss_pred eEEEecccCCCCHHHHHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+++++||+++.|+++++..+...
T Consensus 184 ~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 184 RVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred eEEEEeCCCCcCHHHHHHHHhhC
Confidence 89999999999999999988653
No 283
>KOG1532|consensus
Probab=98.63 E-value=5.8e-07 Score=74.99 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=56.3
Q ss_pred ceEEEEEec---CChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH------HHHHHhhc----c---CccccH
Q psy8274 112 DVFQICFSL---VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE------TIEKLKEK----K---LAPITY 175 (228)
Q Consensus 112 d~vi~v~Dv---t~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~------~~~~~~~~----~---~~~v~~ 175 (228)
.+++.|.|. +++.+|-.-- +|..---+..+.|.|+|-||+|+.+..- ..|.+..- . ...+..
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNM--lYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~ 226 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNM--LYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTR 226 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHH--HHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhh
Confidence 666777774 3455564421 1222222334799999999999998642 11111110 0 001111
Q ss_pred HHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 176 PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.....+-.-+.-+..+-|||.+|.|.+++|..+-+.+-
T Consensus 227 SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 227 SMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred hHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 11111222223367889999999999999999887664
No 284
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.63 E-value=6.1e-07 Score=79.28 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=56.9
Q ss_pred ceEEEEE-ecC----ChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC
Q psy8274 112 DVFQICF-SLV----NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG 186 (228)
Q Consensus 112 d~vi~v~-Dvt----~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 186 (228)
+..|+|. |.+ .++.+..+.+.|+..|... ++|+++|.||.|-..+ .+.+.+..+..+++
T Consensus 146 tIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~--~kPfiivlN~~dp~~~--------------et~~l~~~l~eky~ 209 (492)
T TIGR02836 146 TIGVVVTTDGTITDIPREDYVEAEERVIEELKEL--NKPFIILLNSTHPYHP--------------ETEALRQELEEKYD 209 (492)
T ss_pred cEEEEEEcCCCccccccccchHHHHHHHHHHHhc--CCCEEEEEECcCCCCc--------------hhHHHHHHHHHHhC
Confidence 7888887 653 3456777777899999888 8999999999994332 12233445556678
Q ss_pred CceEEEecccC--CCCHHHHHHHHHHHh
Q psy8274 187 AVKYLECSALT--QKGLKTVFDEAIRAV 212 (228)
Q Consensus 187 ~~~~~evSa~~--~~~v~~lf~~l~~~i 212 (228)
.+++.+|+.. .+.|..+|..++..+
T Consensus 210 -vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 210 -VPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred -CceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 5777877763 345666666555443
No 285
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.62 E-value=9.2e-08 Score=84.26 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=59.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHH----HHHHHhCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL----SMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~ 187 (228)
+++++|+|+.|..+ .|...+.+...+.|+++|+||+|+... .+..++.. .+++.+|+
T Consensus 65 ~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k-------------~~~~~~~~~~l~~~~k~~g~ 125 (360)
T TIGR03597 65 ALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPK-------------SVNLSKIKEWMKKRAKELGL 125 (360)
T ss_pred cEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCC-------------CCCHHHHHHHHHHHHHHcCC
Confidence 89999999976542 455566655557899999999999753 12333333 34556674
Q ss_pred c--eEEEecccCCCCHHHHHHHHHHH
Q psy8274 188 V--KYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 188 ~--~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. .++++||++|.|++++|..+.+.
T Consensus 126 ~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 126 KPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2 48999999999999999998664
No 286
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.61 E-value=2e-07 Score=72.19 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=56.6
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+|++++|+|++++...... .+...+.. .+.|+++|+||+|+..... . .+...+.+..+ .++
T Consensus 13 aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~--~~~~~~~~~~~-~~~ 73 (156)
T cd01859 13 SDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV------------L--EKWKSIKESEG-IPV 73 (156)
T ss_pred CCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH------------H--HHHHHHHHhCC-CcE
Confidence 4999999999876543321 22222222 2689999999999964311 0 11112333345 478
Q ss_pred EEecccCCCCHHHHHHHHHHHhc
Q psy8274 191 LECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+++||+++.|++++++.+.+.+.
T Consensus 74 ~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 74 VYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEccccccHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 287
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.59 E-value=4.7e-07 Score=73.61 Aligned_cols=81 Identities=17% Similarity=0.056 Sum_probs=51.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-CCceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-GAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 190 (228)
+..+.|.|+++...... . .... ...|.++++||+|+..... ....+.....+.+ ...++
T Consensus 125 ~~~i~Vvd~~~~d~~~~---~---~~~~--~~~a~iiv~NK~Dl~~~~~------------~~~~~~~~~l~~~~~~~~i 184 (207)
T TIGR00073 125 HMRVVLLSVTEGDDKPL---K---YPGM--FKEADLIVINKADLAEAVG------------FDVEKMKADAKKINPEAEI 184 (207)
T ss_pred CeEEEEEecCcccchhh---h---hHhH--HhhCCEEEEEHHHccccch------------hhHHHHHHHHHHhCCCCCE
Confidence 55677888876543211 1 1111 1467899999999975311 1122233333332 22589
Q ss_pred EEecccCCCCHHHHHHHHHHHh
Q psy8274 191 LECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~i 212 (228)
+++||++|.|++++|+++.+..
T Consensus 185 ~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 185 ILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 9999999999999999998753
No 288
>PRK09866 hypothetical protein; Provisional
Probab=98.56 E-value=4.9e-07 Score=83.68 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=58.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH------h
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE------I 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~ 185 (228)
|+|++|.|.+...+..+. .+.+.+.+.....|+++|.||+|+.+..+ -..+....+.+. .
T Consensus 260 DvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dree------------ddkE~Lle~V~~~L~q~~i 325 (741)
T PRK09866 260 SAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNS------------DDADQVRALISGTLMKGCI 325 (741)
T ss_pred CEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCccc------------chHHHHHHHHHHHHHhcCC
Confidence 999999999876555543 44555655533369999999999864311 112333333321 1
Q ss_pred CCceEEEecccCCCCHHHHHHHHHH
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
....+|++||+.|.|++++++.+..
T Consensus 326 ~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 326 TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 2346999999999999999999877
No 289
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.55 E-value=3.7e-08 Score=81.89 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=50.0
Q ss_pred ceEEEEEecC---ChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch--HHHHHHhhc-cCcc-c---cHHHHHHH
Q psy8274 112 DVFQICFSLV---NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK--ETIEKLKEK-KLAP-I---TYPQGLSM 181 (228)
Q Consensus 112 d~vi~v~Dvt---~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~-~~~~-v---~~~~~~~~ 181 (228)
-+++++.|.. ++..|-... ++......+-+.|.+.|.||+|+.... ...+..... .... + ...-...+
T Consensus 124 ~~~v~LvD~~~~~~~~~f~s~~--L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i 201 (238)
T PF03029_consen 124 LVVVFLVDSSFCSDPSKFVSSL--LLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEI 201 (238)
T ss_dssp -EEEEEE-GGG-SSHHHHHHHH--HHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHH
T ss_pred eEEEEEEecccccChhhHHHHH--HHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 6788888975 555555442 222222333479999999999998733 111100000 0000 0 11111222
Q ss_pred HH---HhCCc-eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 182 AK---EIGAV-KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 182 ~~---~~~~~-~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
++ .++.. +++.+|+.+++++++++..+-+++
T Consensus 202 ~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 202 AELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred HHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 22 23545 899999999999999999887654
No 290
>KOG3905|consensus
Probab=98.53 E-value=1.7e-06 Score=73.76 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=48.2
Q ss_pred CCCEEEEEeCCCCCCch-----HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 143 STPIILVGTKLDLRDDK-----ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+|++||++|||....- ...+.+. .......+||-.+| ...+.+|++...|++-++.-+...++-
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfd------fiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFD------FIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHH------HHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHHhcC
Confidence 35999999999985321 1222211 22345678899999 589999999999999999999988763
No 291
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.51 E-value=6.6e-07 Score=76.99 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=47.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ce
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~ 189 (228)
|+.|++.|.- ..+.... .--..|.....-.-++|+.||+||.+-++..-. --..+-..|+..+|. ..
T Consensus 111 dlAIlLVDAR--~Gvl~QT-rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~--------~I~~dy~~fa~~L~~~~~~ 179 (431)
T COG2895 111 DLAILLVDAR--KGVLEQT-RRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE--------AIVADYLAFAAQLGLKDVR 179 (431)
T ss_pred cEEEEEEecc--hhhHHHh-HHHHHHHHHhCCcEEEEEEeeecccccCHHHHH--------HHHHHHHHHHHHcCCCcce
Confidence 9999999973 2332222 101111111112457788899999975331111 112345677888764 45
Q ss_pred EEEecccCCCCHH
Q psy8274 190 YLECSALTQKGLK 202 (228)
Q Consensus 190 ~~evSa~~~~~v~ 202 (228)
++++||+.|+||-
T Consensus 180 ~IPiSAl~GDNV~ 192 (431)
T COG2895 180 FIPISALLGDNVV 192 (431)
T ss_pred EEechhccCCccc
Confidence 8999999999975
No 292
>PRK13768 GTPase; Provisional
Probab=98.50 E-value=8e-07 Score=74.59 Aligned_cols=100 Identities=19% Similarity=0.134 Sum_probs=59.2
Q ss_pred ceEEEEEecCChhhHHHHHH-hhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccC---------------ccccH
Q psy8274 112 DVFQICFSLVNPASFENVRA-KWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKL---------------APITY 175 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~-~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---------------~~v~~ 175 (228)
+++++|+|.+...+..+... .|+........+.|+++|.||+|+....+..+....... ....
T Consensus 130 ~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~- 208 (253)
T PRK13768 130 SVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLS- 208 (253)
T ss_pred eEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHH-
Confidence 99999999976544333321 233332322347999999999999876442221111100 0000
Q ss_pred HHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 176 PQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 176 ~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+.....+..+ ..+++++|++++.|++++++++...+
T Consensus 209 ~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 209 LELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 01112223333 24789999999999999999997765
No 293
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.48 E-value=4.8e-07 Score=79.14 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=84.4
Q ss_pred EeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEE
Q psy8274 39 INLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118 (228)
Q Consensus 39 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 118 (228)
+.+.+||++|+...+..|..++.++ ++++||.
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v------------------------------------------------~~IiFvv 215 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNV------------------------------------------------TAIIFCV 215 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCC------------------------------------------------CEEEEEE
Confidence 5678999999999999999999888 9999999
Q ss_pred ecCCh----------hhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCchH----HHHHHhhccCccccHHHHHHHH
Q psy8274 119 SLVNP----------ASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKE----TIEKLKEKKLAPITYPQGLSMA 182 (228)
Q Consensus 119 Dvt~~----------~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~v~~~~~~~~~ 182 (228)
|+++- ..+.... ..+..+-+. ..+.|++|++||.|+....- ...-+...... .+.+.+..|.
T Consensus 216 dlSd~d~~~~Ed~~~nrl~esl-~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~-~~~~~~~~yi 293 (342)
T smart00275 216 ALSEYDQVLEEDESTNRMQESL-NLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGP-NDYEAAAKFI 293 (342)
T ss_pred ECcccccchhccCcchHHHHHH-HHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCC-CCHHHHHHHH
Confidence 99962 2354444 333343332 24789999999999875321 11111111111 2444555554
Q ss_pred HHh-----C-----CceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 183 KEI-----G-----AVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 183 ~~~-----~-----~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.. . .+.++.++|.+-.++..+|+.+...|++.
T Consensus 294 ~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 294 KQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 431 1 13456788888899999999988877653
No 294
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.45 E-value=3.3e-06 Score=76.58 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=45.6
Q ss_pred CCEEEEEeCCCCCCchHHHHHHhhccCc--cccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 144 TPIILVGTKLDLRDDKETIEKLKEKKLA--PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+|++||++|+|....-+... .++.. .+-......+|-.+|+ ..+.+|++...|++.++.-+...+..
T Consensus 197 ipi~VV~tksD~~~~Lek~~---~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKET---DWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred cceEEEEecccHHHHHhhhc---ccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHHHhcc
Confidence 59999999999765311000 00001 1122336677778895 78889999999999999998888764
No 295
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.43 E-value=4e-06 Score=74.57 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=87.5
Q ss_pred ChhhhHHhhhhCC--CCCCCC--ceeee--c---------cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchh
Q psy8274 3 GKTCLLISYTTNA--FPGEYI--PTVFD--N---------YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSM 67 (228)
Q Consensus 3 GKTsli~~~~~~~--~~~~~~--~t~~~--~---------~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~ 67 (228)
|||||+..++.++ |.+... ..+.| + ..+.-.++-+.+.+.|.|||||.+|-.--.....-.
T Consensus 17 GKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MV---- 92 (603)
T COG1217 17 GKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMV---- 92 (603)
T ss_pred CcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhc----
Confidence 9999999999654 432110 01111 1 122323344447888999999998854332222222
Q ss_pred HHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCC
Q psy8274 68 AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPST 144 (228)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~ 144 (228)
|+++++.|..+ |++=.-+. + .+. .+.
T Consensus 93 --------------------------------------------DgvlLlVDA~EGpMPQTrFVlk-K---Al~---~gL 121 (603)
T COG1217 93 --------------------------------------------DGVLLLVDASEGPMPQTRFVLK-K---ALA---LGL 121 (603)
T ss_pred --------------------------------------------ceEEEEEEcccCCCCchhhhHH-H---HHH---cCC
Confidence 99999999876 33322221 1 111 145
Q ss_pred CEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH-------hCCceEEEecccCCC----------CHHHHHHH
Q psy8274 145 PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE-------IGAVKYLECSALTQK----------GLKTVFDE 207 (228)
Q Consensus 145 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~evSa~~~~----------~v~~lf~~ 207 (228)
+.|||.||+|....+.. +. .+++..+.-. ++ .|++..|++.|. ++.-||+.
T Consensus 122 ~PIVVvNKiDrp~Arp~---------~V--vd~vfDLf~~L~A~deQLd-FPivYAS~~~G~a~~~~~~~~~~m~pLfe~ 189 (603)
T COG1217 122 KPIVVINKIDRPDARPD---------EV--VDEVFDLFVELGATDEQLD-FPIVYASARNGTASLDPEDEADDMAPLFET 189 (603)
T ss_pred CcEEEEeCCCCCCCCHH---------HH--HHHHHHHHHHhCCChhhCC-CcEEEeeccCceeccCccccccchhHHHHH
Confidence 56777899999875431 01 1122233322 45 478888988764 78889999
Q ss_pred HHHHhcCCCC
Q psy8274 208 AIRAVLCPVP 217 (228)
Q Consensus 208 l~~~i~~~~~ 217 (228)
+++.+..+.-
T Consensus 190 I~~hvp~P~~ 199 (603)
T COG1217 190 ILDHVPAPKG 199 (603)
T ss_pred HHHhCCCCCC
Confidence 9999887663
No 296
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.38 E-value=3e-06 Score=69.90 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=43.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE-EEEEeCCCCCCchHHHHHHhhccCccccHHHHHH-HHH-HhCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI-ILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS-MAK-EIGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~ 188 (228)
|++++|.|.+........ .++..+... +.|. ++|.||+|+.+.....+. +. .+... +.. .....
T Consensus 105 DvVllviDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~--------~~-~~l~~~~~~~~~~~~ 171 (225)
T cd01882 105 DLVLLLIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRK--------TK-KRLKHRFWTEVYQGA 171 (225)
T ss_pred CEEEEEEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHHHHHH--------HH-HHHHHHHHHhhCCCC
Confidence 999999999865443332 344444443 4674 559999999753221111 11 11211 222 22336
Q ss_pred eEEEecccCCC
Q psy8274 189 KYLECSALTQK 199 (228)
Q Consensus 189 ~~~evSa~~~~ 199 (228)
+++.+||++..
T Consensus 172 ki~~iSa~~~~ 182 (225)
T cd01882 172 KLFYLSGIVHG 182 (225)
T ss_pred cEEEEeeccCC
Confidence 89999999874
No 297
>KOG3886|consensus
Probab=98.35 E-value=7e-07 Score=72.75 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=37.6
Q ss_pred CCCceEEEEEecCChhhHHHHH--HhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 109 KRCDVFQICFSLVNPASFENVR--AKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~s~~~~~--~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
.+++++|+|||+...+--.++. ++-++.+.++.+...++....|.||.....
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 3449999999998775544442 134455666777788899999999987654
No 298
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=5.8e-06 Score=70.49 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=65.0
Q ss_pred ceEEEEEecCC----hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVN----PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~----~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|+.++|.+.+. |++-+++- .+.-. .-..+++|-||+||...+. ...++++..+|.+--
T Consensus 111 DgAlLvIaANEpcPQPQT~EHl~-----AleIi-gik~iiIvQNKIDlV~~E~----------AlE~y~qIk~FvkGt~A 174 (415)
T COG5257 111 DGALLVIAANEPCPQPQTREHLM-----ALEII-GIKNIIIVQNKIDLVSRER----------ALENYEQIKEFVKGTVA 174 (415)
T ss_pred cceEEEEecCCCCCCCchHHHHH-----HHhhh-ccceEEEEecccceecHHH----------HHHHHHHHHHHhccccc
Confidence 99999999875 44444442 22211 1256889999999998654 334556666666542
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
.-.|++++||..+.|++.+++.+...|..+..+
T Consensus 175 e~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 175 ENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred CCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 225899999999999999999999999876554
No 299
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.30 E-value=1.9e-06 Score=65.68 Aligned_cols=73 Identities=22% Similarity=0.184 Sum_probs=48.6
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+|++++|+|+.++.+.... .+...+.....+.|+++|.||+|+..... ..+...+.+..+ .++
T Consensus 12 aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~~~--------------~~~~~~~~~~~~-~~i 74 (141)
T cd01857 12 SDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTEEQ--------------RKAWAEYFKKEG-IVV 74 (141)
T ss_pred CCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCHHH--------------HHHHHHHHHhcC-CeE
Confidence 3999999999987765421 22233332224689999999999975321 123344555566 589
Q ss_pred EEecccCCCC
Q psy8274 191 LECSALTQKG 200 (228)
Q Consensus 191 ~evSa~~~~~ 200 (228)
+++||+++.+
T Consensus 75 i~iSa~~~~~ 84 (141)
T cd01857 75 VFFSALKENA 84 (141)
T ss_pred EEEEecCCCc
Confidence 9999998754
No 300
>PTZ00258 GTP-binding protein; Provisional
Probab=98.30 E-value=8.6e-06 Score=72.20 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=30.1
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCe---------------EEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~ 50 (228)
|||||||+|.+++... ...|..|..+.....+.+.+. ...+++.|+||-.
T Consensus 31 NvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 31 NVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 7999999999986654 234444432322233333221 2358899999954
No 301
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.30 E-value=3.9e-06 Score=64.98 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=54.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|++++|.|+.++.+.... ++....-...+.|+++|.||+|+..... + ......+....+ ..++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~~~~~~~~~p~IiVlNK~Dl~~~~~------------~-~~~~~~~~~~~~-~~ii 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIERVLIKEKGKKLILVLNKADLVPKEV------------L-RKWLAYLRHSYP-TIPF 63 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHHHHHhcCCCCEEEEEechhcCCHHH------------H-HHHHHHHHhhCC-ceEE
Confidence 689999999988766532 2221111123689999999999975321 0 000112222333 5689
Q ss_pred EecccCCCCHHHHHHHHHHHh
Q psy8274 192 ECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i 212 (228)
.+||+++.|++++++.+....
T Consensus 64 ~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 64 KISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EEeccCCcChhhHHHHHHHHh
Confidence 999999999999999887653
No 302
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.29 E-value=2.5e-06 Score=73.11 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=61.2
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
||||||++|++++... .....++...........+| ..+.++||||....... .
T Consensus 48 GVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~------------~---------- 103 (313)
T TIGR00991 48 GVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYI------------N---------- 103 (313)
T ss_pred CCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHH------------H----------
Confidence 8999999999997653 11222211111112223345 57899999996543110 0
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEeCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLDL 155 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl 155 (228)
+...+.++..+.. ...|++++|..++.. .+......++..+...+. -.+.|||.|+.|.
T Consensus 104 ----------e~~~~~ik~~l~~-------~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~ 165 (313)
T TIGR00991 104 ----------DQAVNIIKRFLLG-------KTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQF 165 (313)
T ss_pred ----------HHHHHHHHHHhhc-------CCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence 0001111111110 012999999665432 233222245556665542 2578999999997
Q ss_pred CCc
Q psy8274 156 RDD 158 (228)
Q Consensus 156 ~~~ 158 (228)
..+
T Consensus 166 ~~p 168 (313)
T TIGR00991 166 SPP 168 (313)
T ss_pred CCC
Confidence 743
No 303
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.29 E-value=3.1e-06 Score=69.08 Aligned_cols=166 Identities=17% Similarity=0.118 Sum_probs=84.4
Q ss_pred CCChhhhHHhhhhCCCCCCCC--cee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYI--PTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~--~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|+||||++|.+++........ ... .........++|. .+.|+||||-.+.... ...+.
T Consensus 10 GsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~--------~~~~~--------- 70 (212)
T PF04548_consen 10 GSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGS--------DEEII--------- 70 (212)
T ss_dssp TSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEE--------HHHHH---------
T ss_pred CCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCccc--------HHHHH---------
Confidence 899999999999776432211 111 1112233466774 5678999995432210 01111
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCC---CCEEEEEeCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPS---TPIILVGTKLD 154 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~---~piilv~nK~D 154 (228)
.+..+......| ..+++++|...+ +-+-.+. ..+..+....+. .-++||.|..|
T Consensus 71 --------------~~i~~~l~~~~~------g~ha~llVi~~~-r~t~~~~--~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 71 --------------REIKRCLSLCSP------GPHAFLLVIPLG-RFTEEDR--EVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp --------------HHHHHHHHHTTT-------ESEEEEEEETT-B-SHHHH--HHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred --------------HHHHHHHHhccC------CCeEEEEEEecC-cchHHHH--HHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 111111110111 129999999987 3332222 444455544331 34777788888
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEeccc------CCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSAL------TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~------~~~~v~~lf~~l~~~i~~ 214 (228)
...... .+.+... -.......+.+..+ .+|..++.+ ....+.+||..+-.-+..
T Consensus 128 ~~~~~~-~~~~l~~----~~~~~l~~li~~c~-~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 128 ELEDDS-LEDYLKK----ESNEALQELIEKCG-GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp GGTTTT-HHHHHHH----HHHHHHHHHHHHTT-TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-HHHHHhc----cCchhHhHHhhhcC-CEEEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 665533 2211111 11234567777788 478777666 334677787777665543
No 304
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.28 E-value=1.5e-06 Score=72.70 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=31.1
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCccc
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 52 (228)
|||||||+|++++.... ..+.++...........++ ..+.+|||||-...
T Consensus 41 GvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~ 92 (249)
T cd01853 41 GVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLES 92 (249)
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcc
Confidence 89999999999987542 2222332221222333455 56789999997643
No 305
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.26 E-value=5.7e-06 Score=64.14 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=54.3
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+|.+++|.|+.++.+-..- .+...+.....+.|+++|.||+|+..... . ......+.+.+. ...
T Consensus 9 aD~il~VvD~~~p~~~~~~--~i~~~l~~~~~~~p~ilVlNKiDl~~~~~------------~-~~~~~~~~~~~~-~~~ 72 (157)
T cd01858 9 SDVVIQVLDARDPMGTRCK--HVEEYLKKEKPHKHLIFVLNKCDLVPTWV------------T-ARWVKILSKEYP-TIA 72 (157)
T ss_pred CCEEEEEEECCCCccccCH--HHHHHHHhccCCCCEEEEEEchhcCCHHH------------H-HHHHHHHhcCCc-EEE
Confidence 3999999999987432111 33334443334589999999999975421 0 111222222222 225
Q ss_pred EEecccCCCCHHHHHHHHHHH
Q psy8274 191 LECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.+||+.+.|++++++.+...
T Consensus 73 ~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 73 FHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred EEeeccccccHHHHHHHHHHH
Confidence 789999999999999998764
No 306
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=4.1e-06 Score=74.02 Aligned_cols=84 Identities=23% Similarity=0.169 Sum_probs=55.6
Q ss_pred ceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 112 DVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
|..++|.|.++ +.+.+++. .+... ...-.++|.||+|+.++.. .++.. .+...... +.+.
T Consensus 75 d~alLvV~~deGl~~qtgEhL~-----iLdll-gi~~giivltk~D~~d~~r-~e~~i---------~~Il~~l~-l~~~ 137 (447)
T COG3276 75 DYALLVVAADEGLMAQTGEHLL-----ILDLL-GIKNGIIVLTKADRVDEAR-IEQKI---------KQILADLS-LANA 137 (447)
T ss_pred ceEEEEEeCccCcchhhHHHHH-----HHHhc-CCCceEEEEeccccccHHH-HHHHH---------HHHHhhcc-cccc
Confidence 99999999964 55555542 22222 2344689999999997532 11111 11111111 4557
Q ss_pred eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+++.+|+.+|.||+++-+.+....
T Consensus 138 ~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 138 KIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccccccccCCCHHHHHHHHHHhh
Confidence 899999999999999999999877
No 307
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.24 E-value=7.1e-06 Score=71.36 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=50.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH-------H
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK-------E 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~ 184 (228)
|.+++|.+...+..+.... ..+.. ..-++|.||+|+.......+ ...+...... .
T Consensus 171 D~vlvv~~p~~gd~iq~~k----~gi~E----~aDIiVVNKaDl~~~~~a~~----------~~~el~~~L~l~~~~~~~ 232 (332)
T PRK09435 171 DFFLLLQLPGAGDELQGIK----KGIME----LADLIVINKADGDNKTAARR----------AAAEYRSALRLLRPKDPG 232 (332)
T ss_pred CEEEEEecCCchHHHHHHH----hhhhh----hhheEEeehhcccchhHHHH----------HHHHHHHHHhcccccccC
Confidence 9999996644444443332 11111 22378899999886432110 0111111111 1
Q ss_pred hCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 185 IGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 185 ~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|. .+++.+||+++.|++++++.+.+.....
T Consensus 233 w~-~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 233 WQ-PPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred CC-CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 22 5899999999999999999999876543
No 308
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.23 E-value=1.2e-05 Score=68.43 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=64.3
Q ss_pred CCChhhhHHhhhhCCCCCCC---C-------cee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGEY---I-------PTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~---~-------~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|+|||||+|.|.+..+.... . ++. .......+.-++..+.+.++||||......... .+...-.++.
T Consensus 14 G~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~-~~~~I~~yI~- 91 (281)
T PF00735_consen 14 GLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSD-CWEPIVDYIE- 91 (281)
T ss_dssp TSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCH-HHHHHHHHHH-
T ss_pred CCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchh-hhHHHHHHHH-
Confidence 89999999999987653321 1 111 111122334477889999999999765322110 0110000111
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILV 149 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv 149 (228)
+-|......-..+.-+...-.++|++|++.+.+.. ++..+. +..+++....+++|-|
T Consensus 92 -------------------~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D---i~~mk~Ls~~vNvIPv 148 (281)
T PF00735_consen 92 -------------------SQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD---IEFMKRLSKRVNVIPV 148 (281)
T ss_dssp -------------------HHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH---HHHHHHHTTTSEEEEE
T ss_pred -------------------HHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH---HHHHHHhcccccEEeE
Confidence 11111111111111111123345999999998742 333332 2244444445889999
Q ss_pred EeCCCCCCchH
Q psy8274 150 GTKLDLRDDKE 160 (228)
Q Consensus 150 ~nK~Dl~~~~~ 160 (228)
..|+|.....+
T Consensus 149 IaKaD~lt~~e 159 (281)
T PF00735_consen 149 IAKADTLTPEE 159 (281)
T ss_dssp ESTGGGS-HHH
T ss_pred EecccccCHHH
Confidence 99999887543
No 309
>KOG1144|consensus
Probab=98.22 E-value=7.8e-06 Score=76.23 Aligned_cols=118 Identities=22% Similarity=0.353 Sum_probs=74.6
Q ss_pred eeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEe
Q psy8274 40 NLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119 (228)
Q Consensus 40 ~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D 119 (228)
.+.++||||++.|..++.....- ||.+|+|.|
T Consensus 541 g~lvIdtpghEsFtnlRsrgssl------------------------------------------------C~~aIlvvd 572 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSL------------------------------------------------CDLAILVVD 572 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccc------------------------------------------------cceEEEEee
Confidence 36789999999998777644333 499999999
Q ss_pred cCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc------hHHHHHHhhccCccccHHHH-------HHHHH
Q psy8274 120 LVN---PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD------KETIEKLKEKKLAPITYPQG-------LSMAK 183 (228)
Q Consensus 120 vt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~v~~~~~-------~~~~~ 183 (228)
+.. +.+++++. .|+.+ +.|.||+.||+|..-. ..+.+.++.+....+. +-- ..|+.
T Consensus 573 ImhGlepqtiESi~-----lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~-EF~~R~~~ii~efaE 644 (1064)
T KOG1144|consen 573 IMHGLEPQTIESIN-----LLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN-EFKERLNNIIVEFAE 644 (1064)
T ss_pred hhccCCcchhHHHH-----HHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH-HHHHHHHHHHHHHHH
Confidence 874 55565542 55555 7999999999996531 1222222222111111 100 01111
Q ss_pred H-------h------CCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 184 E-------I------GAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 184 ~-------~------~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
. + ..+.++++||-+|+||-+|+-++++...
T Consensus 645 QgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 645 QGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred cccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 0 1 1245789999999999999999887553
No 310
>KOG0461|consensus
Probab=98.21 E-value=2.1e-05 Score=67.84 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=56.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh------
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI------ 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------ 185 (228)
|..++|.|+.....-+.++ .+ .+-+. .....++|.||+|...+...... + ...+.++.+.+
T Consensus 95 Dlm~lviDv~kG~QtQtAE-cL--iig~~-~c~klvvvinkid~lpE~qr~sk--------i-~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 95 DLMILVIDVQKGKQTQTAE-CL--IIGEL-LCKKLVVVINKIDVLPENQRASK--------I-EKSAKKVRKTLESTGFD 161 (522)
T ss_pred eeeeEEEehhcccccccch-hh--hhhhh-hccceEEEEeccccccchhhhhH--------H-HHHHHHHHHHHHhcCcC
Confidence 9999999998654433332 11 11111 12446778899887754321110 1 11122333322
Q ss_pred CCceEEEecccCC----CCHHHHHHHHHHHhcCCCCC
Q psy8274 186 GAVKYLECSALTQ----KGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 186 ~~~~~~evSa~~~----~~v~~lf~~l~~~i~~~~~~ 218 (228)
|-.|+.++||+.| +++.++.+.+-.++..++.+
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 3378999999999 78888888888888877654
No 311
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.17 E-value=4.8e-05 Score=66.82 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCe---------------EEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~ 50 (228)
|||||||+|++++... .+.|..|..+.....+.+.+. ...+++.|+||-.
T Consensus 12 NvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~ 77 (364)
T PRK09601 12 NVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLV 77 (364)
T ss_pred CCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCC
Confidence 7999999999997663 233443332322233333221 1358889999854
No 312
>PTZ00416 elongation factor 2; Provisional
Probab=98.17 E-value=2.5e-06 Score=82.73 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=29.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++++|.|+++.-.-... .++..+... +.|++++.||+|+.
T Consensus 117 D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 117 DGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred CeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence 999999999875433322 333444443 58999999999987
No 313
>KOG1486|consensus
Probab=98.15 E-value=5e-05 Score=62.92 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=39.7
Q ss_pred CCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 144 TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+|++-|-||+|. ++.++..++++. ..-+.+|+..+-|++.+++.+.+.+.
T Consensus 239 ~~ClYvYnKID~-----------------vs~eevdrlAr~---PnsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 239 IKCLYVYNKIDQ-----------------VSIEEVDRLARQ---PNSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEeeccce-----------------ecHHHHHHHhcC---CCcEEEEeccccCHHHHHHHHHHHhc
Confidence 477777888873 556778888886 34667899999999999999999764
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.11 E-value=1.5e-05 Score=68.60 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=49.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH---HhCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK---EIGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~ 188 (228)
|.++++-+ +.+-+++. .+...+ ...|.++|.||+|+....+....... . ......+.. .+. .
T Consensus 149 D~i~vv~~---~~~~~el~-~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~~-----~-~~~l~~l~~~~~~~~-~ 213 (300)
T TIGR00750 149 DTFVVVTI---PGTGDDLQ-GIKAGL----MEIADIYVVNKADGEGATNVTIARLM-----L-ALALEEIRRREDGWR-P 213 (300)
T ss_pred ceEEEEec---CCccHHHH-HHHHHH----hhhccEEEEEcccccchhHHHHHHHH-----H-HHHHhhccccccCCC-C
Confidence 77777743 33434443 222222 25778999999999865321000000 0 000011111 122 3
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+++++||+++.|++++++++.....
T Consensus 214 ~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 214 PVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred CEEEEEccCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999988643
No 315
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.11 E-value=3.5e-06 Score=81.89 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=29.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++|+|.|++..-..... ..+..+... +.|++++.||+|+.
T Consensus 123 D~ailVvda~~Gv~~~t~--~~~~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 123 DGALVVVDCIEGVCVQTE--TVLRQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred CEEEEEEECCCCCcccHH--HHHHHHHHC--CCCEEEEEECCccc
Confidence 999999999875443322 333333333 68999999999987
No 316
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.08 E-value=9.2e-05 Score=64.31 Aligned_cols=131 Identities=19% Similarity=0.185 Sum_probs=73.3
Q ss_pred CCChhhhHHhhhhCCCCCC----------CCceeee-ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGE----------YIPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~----------~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|.|||||+|.+++..+... ..+++.. .+...+.=+|..+.+.++||||..++-.... ++.-.
T Consensus 33 G~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~-~we~I------ 105 (373)
T COG5019 33 GLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK-CWEPI------ 105 (373)
T ss_pred CCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc-cHHHH------
Confidence 7899999999998755433 2233322 2223334478889999999999877543311 11111
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCC-----CCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCC
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVP-----KKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPST 144 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~ 144 (228)
-+...++....+.-..... .-.+++++++..-.+ +.++..+.=..+..|. ..+
T Consensus 106 ------------------~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls---~~v 163 (373)
T COG5019 106 ------------------VDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLS---KRV 163 (373)
T ss_pred ------------------HHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHh---ccc
Confidence 1111222222222222221 224569999988876 3344444313333343 447
Q ss_pred CEEEEEeCCCCCCchH
Q psy8274 145 PIILVGTKLDLRDDKE 160 (228)
Q Consensus 145 piilv~nK~Dl~~~~~ 160 (228)
.+|-|+-|+|.....+
T Consensus 164 NlIPVI~KaD~lT~~E 179 (373)
T COG5019 164 NLIPVIAKADTLTDDE 179 (373)
T ss_pred CeeeeeeccccCCHHH
Confidence 7777789999887543
No 317
>PRK13796 GTPase YqeH; Provisional
Probab=98.08 E-value=2e-05 Score=69.65 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=57.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHH----HHHHHHhCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG----LSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~ 187 (228)
..+++|.|+.|..+ .|...+.+...+.|+++|+||+||.... ...++. ..+++.+|+
T Consensus 71 ~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~-------------~~~~~i~~~l~~~~k~~g~ 131 (365)
T PRK13796 71 ALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKS-------------VKKNKVKNWLRQEAKELGL 131 (365)
T ss_pred cEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCc-------------cCHHHHHHHHHHHHHhcCC
Confidence 48999999987431 4555666655578999999999997531 222222 234555664
Q ss_pred c--eEEEecccCCCCHHHHHHHHHHH
Q psy8274 188 V--KYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 188 ~--~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. .++.+||+++.|++++++.+.+.
T Consensus 132 ~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 132 RPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 2 58999999999999999999764
No 318
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.7e-05 Score=69.67 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=48.5
Q ss_pred ceEEEEEecCChhh---H--HHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHHHHh
Q psy8274 112 DVFQICFSLVNPAS---F--ENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMAKEI 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~s---~--~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~ 185 (228)
|+.+||.|+.+.+. | ....++.+ .|.+...-.-+|++.||+|+.+-++ ..++ -..+...+.+..
T Consensus 110 D~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~~lIVavNKMD~v~wde~rf~e---------i~~~v~~l~k~~ 179 (428)
T COG5256 110 DVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIKQLIVAVNKMDLVSWDEERFEE---------IVSEVSKLLKMV 179 (428)
T ss_pred cEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCceEEEEEEcccccccCHHHHHH---------HHHHHHHHHHHc
Confidence 99999999987631 1 11110100 1222223345788889999986211 1111 112344466666
Q ss_pred CC----ceEEEecccCCCCHHHH
Q psy8274 186 GA----VKYLECSALTQKGLKTV 204 (228)
Q Consensus 186 ~~----~~~~evSa~~~~~v~~l 204 (228)
|+ ++|+++|+..|+|+.+.
T Consensus 180 G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 180 GYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CCCccCCeEEecccccCCccccc
Confidence 54 45999999999998653
No 319
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.01 E-value=3.5e-05 Score=60.65 Aligned_cols=80 Identities=26% Similarity=0.207 Sum_probs=53.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.+++|+|+.++.+-... .+... ..+.|+++|.||+|+..... + .+...+.+..+ ..++
T Consensus 21 D~il~v~D~~~~~~~~~~--~i~~~----~~~k~~ilVlNK~Dl~~~~~------------~--~~~~~~~~~~~-~~vi 79 (171)
T cd01856 21 DLVIEVRDARIPLSSRNP--LLEKI----LGNKPRIIVLNKADLADPKK------------T--KKWLKYFESKG-EKVL 79 (171)
T ss_pred CEEEEEeeccCccCcCCh--hhHhH----hcCCCEEEEEehhhcCChHH------------H--HHHHHHHHhcC-CeEE
Confidence 999999999876543221 12222 22578999999999964311 0 11112222233 4689
Q ss_pred EecccCCCCHHHHHHHHHHHh
Q psy8274 192 ECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i 212 (228)
.+||+++.|++++...+...+
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEECCCcccHHHHHHHHHHHH
Confidence 999999999999999988865
No 320
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=0.00011 Score=65.24 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.6
Q ss_pred ceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 188 VKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.|.|+=||++|.||+.+++.++.-...+..
T Consensus 251 TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~ 280 (528)
T COG4108 251 TPVFFGSALGNFGVDHFLDALVDWAPSPRA 280 (528)
T ss_pred cceEehhhhhccCHHHHHHHHHhhCCCCCc
Confidence 679999999999999999999998776654
No 321
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.00 E-value=9e-06 Score=77.98 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=27.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|++++|.|+...-.-.... .| ...... +.|.+++.||+|+..
T Consensus 112 D~avlVvda~~g~~~~t~~-~~-~~~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 112 DGAIVVVDAVEGVMPQTET-VL-RQALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred CEEEEEEECCCCCCccHHH-HH-HHHHHc--CCCeEEEEECchhhc
Confidence 9999999988653332221 22 222222 467899999999763
No 322
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.97 E-value=4.2e-05 Score=67.33 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=43.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH-------
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE------- 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------- 184 (228)
|.+|++.+ .+-+-.++ .+...+.+. ++|+.+|-+|+|..-. ...+.+.+..+.++...-+++
T Consensus 116 D~fiii~s--~rf~~ndv--~La~~i~~~--gK~fyfVRTKvD~Dl~-----~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 116 DFFIIISS--ERFTENDV--QLAKEIQRM--GKKFYFVRTKVDSDLY-----NERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp SEEEEEES--SS--HHHH--HHHHHHHHT--T-EEEEEE--HHHHHH-----HHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred CEEEEEeC--CCCchhhH--HHHHHHHHc--CCcEEEEEecccccHh-----hhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 98888865 33333333 455666666 7899999999995211 111111233443333322222
Q ss_pred -hC--CceEEEecccCCC--CHHHHHHHHHHHhc
Q psy8274 185 -IG--AVKYLECSALTQK--GLKTVFDEAIRAVL 213 (228)
Q Consensus 185 -~~--~~~~~evSa~~~~--~v~~lf~~l~~~i~ 213 (228)
.| ..++|-+|+.+-. +.-.+.+.+...+.
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 12 2568899988543 45556666655443
No 323
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.94 E-value=4.3e-05 Score=65.11 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-CCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 144 TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-GAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+-++|.||+|+..... ...++.....+.. ...+++++||++|+|++++++|+..+
T Consensus 231 ~ADIVVLNKiDLl~~~~------------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLN------------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccH------------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56688899999975211 1223333333332 34689999999999999999999774
No 324
>KOG0458|consensus
Probab=97.92 E-value=7.9e-05 Score=67.99 Aligned_cols=113 Identities=20% Similarity=0.187 Sum_probs=66.3
Q ss_pred EEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCc
Q psy8274 33 MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCD 112 (228)
Q Consensus 33 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d 112 (228)
.++.....+.+.|.||+.+|.+..-.-...+ |
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqa------------------------------------------------D 280 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQA------------------------------------------------D 280 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhcccccc------------------------------------------------c
Confidence 4456677889999999887764332222233 9
Q ss_pred eEEEEEecCChhhHHHHHH------hhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHH-HH
Q psy8274 113 VFQICFSLVNPASFENVRA------KWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMA-KE 184 (228)
Q Consensus 113 ~vi~v~Dvt~~~s~~~~~~------~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~ 184 (228)
+.++|.|.+-. .|+.=.+ +....++ ...-.-+||+.||.|+++=.. ..+ .-......|. +.
T Consensus 281 ~avLvvd~s~~-~FE~gfd~~gQtrEha~llr-~Lgi~qlivaiNKmD~V~Wsq~RF~---------eIk~~l~~fL~~~ 349 (603)
T KOG0458|consen 281 VAVLVVDASTG-EFESGFDPGGQTREHALLLR-SLGISQLIVAINKMDLVSWSQDRFE---------EIKNKLSSFLKES 349 (603)
T ss_pred eEEEEEECCcc-hhhhccCCCCchHHHHHHHH-HcCcceEEEEeecccccCccHHHHH---------HHHHHHHHHHHHh
Confidence 99999998632 2222110 1111222 222346788999999986321 111 1112344454 44
Q ss_pred hCC----ceEEEecccCCCCHHHH
Q psy8274 185 IGA----VKYLECSALTQKGLKTV 204 (228)
Q Consensus 185 ~~~----~~~~evSa~~~~~v~~l 204 (228)
.|+ +.|++||...|+|+...
T Consensus 350 ~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 350 CGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cCcccCCcceEecccccCCccccc
Confidence 443 36999999999998765
No 325
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.91 E-value=4.9e-05 Score=64.59 Aligned_cols=82 Identities=27% Similarity=0.209 Sum_probs=55.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|++++|.|+.++.+-... .+...+ .+.|+++|.||+|+..... ......+.+..+ .+++
T Consensus 23 DvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~--------------~~~~~~~~~~~~-~~vi 81 (276)
T TIGR03596 23 DVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV--------------TKQWLKYFEEKG-IKAL 81 (276)
T ss_pred CEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH--------------HHHHHHHHHHcC-CeEE
Confidence 999999999877554332 122222 2589999999999975311 011111222344 4789
Q ss_pred EecccCCCCHHHHHHHHHHHhcC
Q psy8274 192 ECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+||+++.|++++.+.+.+.+..
T Consensus 82 ~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 82 AINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEECCCcccHHHHHHHHHHHHHH
Confidence 99999999999999888876643
No 326
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.87 E-value=6.1e-05 Score=48.11 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=31.3
Q ss_pred ceEEEEEecCChhhH--HHHHHhhHHHHhhhCCCCCEEEEEeCCC
Q psy8274 112 DVFQICFSLVNPASF--ENVRAKWYPEVRHHCPSTPIILVGTKLD 154 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~--~~~~~~~~~~l~~~~~~~piilv~nK~D 154 (228)
++|+|++|++..++| +... .++.+++....+.|+++|.||+|
T Consensus 15 ~~ilfi~D~Se~CGysie~Q~-~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 15 DAILFIIDPSEQCGYSIEEQL-SLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp SEEEEEE-TT-TTSS-HHHHH-HHHHHHHHHTTTS-EEEEE--TT
T ss_pred ceEEEEEcCCCCCCCCHHHHH-HHHHHHHHHcCCCCEEEEEeccC
Confidence 999999999976665 5555 77888888888999999999998
No 327
>KOG2655|consensus
Probab=97.84 E-value=0.00046 Score=60.32 Aligned_cols=131 Identities=18% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCChhhhHHhhhhCCCCCCCC---------ceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYI---------PTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~---------~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~ 70 (228)
|.|||||+|++....+.++.. .|.. ..+...+.=+|..+.+.+.||||..+...... ++.-..
T Consensus 31 GlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~-~w~pi~------ 103 (366)
T KOG2655|consen 31 GLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN-CWRPIV------ 103 (366)
T ss_pred CccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc-cchhhh------
Confidence 789999999988776654311 1111 11122333368889999999999876543311 121110
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCC---CCC-CCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP---TVP-KKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI 146 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~-~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi 146 (228)
+....+-...++-.. .+. .-.+++++++....+. .++..+. +....+....+.+
T Consensus 104 ------------------~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~D---i~~Mk~l~~~vNi 161 (366)
T KOG2655|consen 104 ------------------NYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLD---IEFMKKLSKKVNL 161 (366)
T ss_pred ------------------HHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhh---HHHHHHHhccccc
Confidence 011111112222111 122 2235688888887653 3444443 2233333445778
Q ss_pred EEEEeCCCCCCchH
Q psy8274 147 ILVGTKLDLRDDKE 160 (228)
Q Consensus 147 ilv~nK~Dl~~~~~ 160 (228)
|-|.-|+|.....+
T Consensus 162 IPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 162 IPVIAKADTLTKDE 175 (366)
T ss_pred cceeeccccCCHHH
Confidence 88889999887644
No 328
>KOG0410|consensus
Probab=97.84 E-value=5.2e-05 Score=64.87 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=52.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCC----CEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHC-PST----PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~----piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 186 (228)
|.++.|.|++.|..-...+ ..+.-+...- +.. .++=|-||+|..... +..+ +
T Consensus 259 dlllHvvDiShP~ae~q~e-~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-------------~e~E-------~-- 315 (410)
T KOG0410|consen 259 DLLLHVVDISHPNAEEQRE-TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-------------VEEE-------K-- 315 (410)
T ss_pred ceEEEEeecCCccHHHHHH-HHHHHHHhcCCCcHHHHhHHHhhcccccccccc-------------Cccc-------c--
Confidence 9999999999987765554 4444444441 112 245567888877542 1111 1
Q ss_pred CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.....+||++|+|++++.+.+-.++..
T Consensus 316 -n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 316 -NLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred -CCccccccccCccHHHHHHHHHHHhhh
Confidence 125668999999999999988777653
No 329
>PRK01889 GTPase RsgA; Reviewed
Probab=97.81 E-value=9.9e-05 Score=65.02 Aligned_cols=83 Identities=23% Similarity=0.243 Sum_probs=56.6
Q ss_pred CCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 109 KRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
-|+|.+++|.++..+-...-+. .++..+... ++|.+||.||+||.+... ........+ ..+ .
T Consensus 111 ANvD~vliV~s~~p~~~~~~ld-r~L~~a~~~--~i~piIVLNK~DL~~~~~------------~~~~~~~~~--~~g-~ 172 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIE-RYLALAWES--GAEPVIVLTKADLCEDAE------------EKIAEVEAL--APG-V 172 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHH-HHHHHHHHc--CCCEEEEEEChhcCCCHH------------HHHHHHHHh--CCC-C
Confidence 5679999999997554444443 666555555 677888999999976311 000112222 235 5
Q ss_pred eEEEecccCCCCHHHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~ 209 (228)
+++.+|++++.|++++..++-
T Consensus 173 ~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 173 PVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred cEEEEECCCCccHHHHHHHhh
Confidence 889999999999999888874
No 330
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.78 E-value=4.6e-05 Score=59.26 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=25.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKL 153 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~ 153 (228)
|++|+|.+.+...+-.... .+....... ...+++|.||.
T Consensus 130 d~vi~V~~~~~~~~~~~~~-~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 130 DVVIFVVDANQDLTESDME-FLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEETTSTGGGHHHH-HHHHHHTTT--CSSEEEEEE-G
T ss_pred CEEEEEeccCcccchHHHH-HHHHHhcCC--CCeEEEEEcCC
Confidence 9999999999866544443 444444444 34488888984
No 331
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.78 E-value=0.00013 Score=62.34 Aligned_cols=81 Identities=25% Similarity=0.253 Sum_probs=54.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|++++|.|+.++.+.... .+...+ .+.|+++|.||+|+.+... ......+.+..+ .+++
T Consensus 26 DvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~~--------------~~~~~~~~~~~~-~~vi 84 (287)
T PRK09563 26 DVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPEV--------------TKKWIEYFEEQG-IKAL 84 (287)
T ss_pred CEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHHH--------------HHHHHHHHHHcC-CeEE
Confidence 999999999876554321 122222 2689999999999965311 011122223335 4789
Q ss_pred EecccCCCCHHHHHHHHHHHhc
Q psy8274 192 ECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.+||+++.|++++.+.+...+.
T Consensus 85 ~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 85 AINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999988877654
No 332
>KOG0468|consensus
Probab=97.78 E-value=3.1e-05 Score=71.63 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=64.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-------ecc--ce---------eE---EEcCeEEeeeeeeCCCCcccccCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-------DNY--SA---------NV---MVDGKPINLGLWDTAGQEDYDRLRPLS 59 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-------~~~--~~---------~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~ 59 (228)
+.|||+|+.-++....++-+.++-. ..+ .. ++ ...++.+.+.+.|||||-+|..-....
T Consensus 138 hhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~ 217 (971)
T KOG0468|consen 138 HHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTAS 217 (971)
T ss_pred ccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHH
Confidence 4799999999987665332111111 000 01 11 115778899999999998775332222
Q ss_pred cccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh
Q psy8274 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH 139 (228)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~ 139 (228)
++-+ |++++|+|+...-.+..- . .|++
T Consensus 218 l~~s------------------------------------------------DgvVlvvDv~EGVmlntE--r---~ikh 244 (971)
T KOG0468|consen 218 LRLS------------------------------------------------DGVVLVVDVAEGVMLNTE--R---IIKH 244 (971)
T ss_pred hhhc------------------------------------------------ceEEEEEEcccCceeeHH--H---HHHH
Confidence 2222 999999999887776543 2 2333
Q ss_pred hC-CCCCEEEEEeCCCCC
Q psy8274 140 HC-PSTPIILVGTKLDLR 156 (228)
Q Consensus 140 ~~-~~~piilv~nK~Dl~ 156 (228)
.- ...|+++|.||.|+.
T Consensus 245 aiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 245 AIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HHhccCcEEEEEehhHHH
Confidence 22 368999999999965
No 333
>KOG0082|consensus
Probab=97.70 E-value=0.00013 Score=63.57 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=94.7
Q ss_pred CCCCCceeeecccee--------EEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccch
Q psy8274 17 PGEYIPTVFDNYSAN--------VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLK 88 (228)
Q Consensus 17 ~~~~~~t~~~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 88 (228)
.++|.||..|-...+ +.+.-+...+.++|++||..-+.-|.++|.+.
T Consensus 165 ~~~Y~PT~~DIL~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v------------------------- 219 (354)
T KOG0082|consen 165 SPDYVPTEQDILRSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDV------------------------- 219 (354)
T ss_pred CCCCCCCHHHHHhhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCC-------------------------
Confidence 456778775543221 12222336889999999988888888899988
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh----------HHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 89 TVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS----------FENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s----------~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
++||||.++++-+. ..... ++.+.+-+.. .+.++||..||.||-
T Consensus 220 -----------------------~aviF~vslSeYdq~l~ED~~~NRM~eS~-~LF~sI~n~~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 220 -----------------------TAVIFCVSLSEYDQVLEEDETTNRMHESL-KLFESICNNKWFANTSIILFLNKKDLF 275 (354)
T ss_pred -----------------------CEEEEEEehhhhhhhcccccchhHHHHHH-HHHHHHhcCcccccCcEEEEeecHHHH
Confidence 99999999874211 11111 3344444332 478999999999987
Q ss_pred Cch----HHHHHHhhccCccccHHHHHHHHHHh---------CCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 157 DDK----ETIEKLKEKKLAPITYPQGLSMAKEI---------GAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 157 ~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+. +...-+...... -+.+++..+.+.. .-+-+..++|.+-.+|+.+|..+.+.|++..
T Consensus 276 eEKi~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 276 EEKIKKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHhccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 642 111111122122 4555666665542 1123556688888899999999999887643
No 334
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.65 E-value=0.00013 Score=61.85 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=31.0
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCe---------------EEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~ 50 (228)
|||||||+|++++.... +.|..|.-+.....+.+.+. ...++++|+||-.
T Consensus 8 N~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~ 73 (274)
T cd01900 8 NVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLV 73 (274)
T ss_pred CCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcC
Confidence 79999999999987652 33443332333333333332 2358899999954
No 335
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00082 Score=57.04 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=56.2
Q ss_pred ceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC
Q psy8274 112 DVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 187 (228)
|+.|+|...+| |.+-+++. ..++. .+| ++++.||+|+.+..+-.+. -..+...+..++++
T Consensus 100 DgAILVVsA~dGpmPqTrEHiL-----larqv--Gvp~ivvflnK~Dmvdd~ellel---------VemEvreLLs~y~f 163 (394)
T COG0050 100 DGAILVVAATDGPMPQTREHIL-----LARQV--GVPYIVVFLNKVDMVDDEELLEL---------VEMEVRELLSEYGF 163 (394)
T ss_pred CccEEEEEcCCCCCCcchhhhh-----hhhhc--CCcEEEEEEecccccCcHHHHHH---------HHHHHHHHHHHcCC
Confidence 99999999987 44444432 22223 565 5677899999986554332 22346677777764
Q ss_pred ----ceEEEecccCCC--------CHHHHHHHHHHHhcCCCCC
Q psy8274 188 ----VKYLECSALTQK--------GLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 188 ----~~~~evSa~~~~--------~v~~lf~~l~~~i~~~~~~ 218 (228)
.|+..-||+..- .|.+|++.+-..+..+.++
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 345555555322 3567777777776665554
No 336
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00023 Score=67.59 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=29.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+...-..+.- .+......+ ++|.+++.||+|....
T Consensus 101 DgavvVvdaveGV~~QTE--tv~rqa~~~--~vp~i~fiNKmDR~~a 143 (697)
T COG0480 101 DGAVVVVDAVEGVEPQTE--TVWRQADKY--GVPRILFVNKMDRLGA 143 (697)
T ss_pred cceEEEEECCCCeeecHH--HHHHHHhhc--CCCeEEEEECcccccc
Confidence 999999998764333222 333333444 7999999999997653
No 337
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.40 E-value=0.00019 Score=54.61 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=29.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
|||||||+|++....... .....+ ..+...+.+++ .+.+|||||-.
T Consensus 93 ~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 93 NVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred CCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence 799999999999876532 111111 22233445554 57899999953
No 338
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.34 E-value=0.0035 Score=52.21 Aligned_cols=45 Identities=24% Similarity=0.099 Sum_probs=29.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+.+++|.|.+..-+-.... .+...+... ..|+++|.||.|..+..
T Consensus 164 ~IIL~Vvda~~d~~~~d~l-~ia~~ld~~--~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 164 CLILAVTPANVDLANSDAL-KLAKEVDPQ--GERTIGVITKLDLMDEG 208 (240)
T ss_pred CeEEEEEECCCCCCchhHH-HHHHHHHHc--CCcEEEEEECCCCCCcc
Confidence 6899999886432222222 333344333 68999999999998753
No 339
>KOG1547|consensus
Probab=97.31 E-value=0.0013 Score=54.26 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=33.3
Q ss_pred CCChhhhHHhhhhCCCCCCCC-ceeeeccc---------eeEEEcCeEEeeeeeeCCCCccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYI-PTVFDNYS---------ANVMVDGKPINLGLWDTAGQEDY 52 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~-~t~~~~~~---------~~~~~~~~~~~~~i~D~~g~~~~ 52 (228)
|.|||||+|.+......+... +..+..+. ..+.=++...++.++||||..+.
T Consensus 56 glgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 56 GLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred CCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc
Confidence 689999999998665443211 11121222 22333788899999999998764
No 340
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.30 E-value=0.0026 Score=59.83 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=62.4
Q ss_pred CCChhhhHHhhhhCC-CCCC-CCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA-FPGE-YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
||||||++|++++.. |... ..+.+..........++ ..+.++||||-.....- . .. ...+.
T Consensus 128 GVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~d-q-~~---neeIL---------- 190 (763)
T TIGR00993 128 GVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASD-Q-SK---NEKIL---------- 190 (763)
T ss_pred CCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccc-h-HH---HHHHH----------
Confidence 899999999999865 3222 11222111122233455 46788999997653210 0 00 00000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhH-HHHHHhhHHHHhhhCCC---CCEEEEEeCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASF-ENVRAKWYPEVRHHCPS---TPIILVGTKLD 154 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~-~~~~~~~~~~l~~~~~~---~piilv~nK~D 154 (228)
..+...+.. ..+|+||+|..++..... .+. .++..|...+.. .-+|||-|+.|
T Consensus 191 --------------k~Ik~~Lsk-------~gpDVVLlV~RLd~~~~D~eD~--~aLr~Iq~lFG~~Iwk~tIVVFThgD 247 (763)
T TIGR00993 191 --------------SSVKKFIKK-------NPPDIVLYVDRLDMQTRDSNDL--PLLRTITDVLGPSIWFNAIVTLTHAA 247 (763)
T ss_pred --------------HHHHHHHhc-------CCCCEEEEEEeCCCccccHHHH--HHHHHHHHHhCHHhHcCEEEEEeCCc
Confidence 000111110 012999999887633322 222 566677766542 35788889999
Q ss_pred CCCc
Q psy8274 155 LRDD 158 (228)
Q Consensus 155 l~~~ 158 (228)
...+
T Consensus 248 ~lpp 251 (763)
T TIGR00993 248 SAPP 251 (763)
T ss_pred cCCC
Confidence 8753
No 341
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.23 E-value=0.0087 Score=53.44 Aligned_cols=83 Identities=7% Similarity=0.117 Sum_probs=58.1
Q ss_pred ceEEEEEecC----ChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC
Q psy8274 112 DVFQICFSLV----NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt----~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 187 (228)
-|+++-=|.+ .++.|..+++....+|... ++|.+++.|-.+=... .+.+-+..+..+++
T Consensus 147 IGiVVTTDGSi~dipRe~Y~eAEervI~ELk~i--gKPFvillNs~~P~s~--------------et~~L~~eL~ekY~- 209 (492)
T PF09547_consen 147 IGIVVTTDGSITDIPRENYVEAEERVIEELKEI--GKPFVILLNSTKPYSE--------------ETQELAEELEEKYD- 209 (492)
T ss_pred eeEEEecCCCccCCChHHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCCCH--------------HHHHHHHHHHHHhC-
Confidence 4555555544 4788999988889999888 8999999988764443 34455677778889
Q ss_pred ceEEEecccC--CCCHHHHHHHHHHH
Q psy8274 188 VKYLECSALT--QKGLKTVFDEAIRA 211 (228)
Q Consensus 188 ~~~~evSa~~--~~~v~~lf~~l~~~ 211 (228)
.+.+.+++.. ...|..++..++-.
T Consensus 210 vpVlpvnc~~l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 210 VPVLPVNCEQLREEDITRILEEVLYE 235 (492)
T ss_pred CcEEEeehHHcCHHHHHHHHHHHHhc
Confidence 5888888763 34555555555443
No 342
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.20 E-value=0.00088 Score=59.67 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=86.8
Q ss_pred CCCCCceeeecccee--------EEEcC-eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccc
Q psy8274 17 PGEYIPTVFDNYSAN--------VMVDG-KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGL 87 (228)
Q Consensus 17 ~~~~~~t~~~~~~~~--------~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (228)
.+.|.||..|....+ +.+.- ....+.++|++|+..-+.-|..++.+.
T Consensus 205 ~~~Y~PT~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v------------------------ 260 (389)
T PF00503_consen 205 QPDYIPTDEDILRCRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDV------------------------ 260 (389)
T ss_dssp STTB---HHHHHHS----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTE------------------------
T ss_pred CCCccCCCCCeeeecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccc------------------------
Confidence 346788876644321 11111 335679999999998888999999888
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC--------h--hhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCC
Q psy8274 88 KTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN--------P--ASFENVRAKWYPEVRHH--CPSTPIILVGTKLDL 155 (228)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~--------~--~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl 155 (228)
++||||.++++ + -.+.+.. .+...+-+. ..+.|++|+.||.|+
T Consensus 261 ------------------------~~vif~vsls~ydq~~~ed~~~nrl~esl-~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 261 ------------------------TAVIFVVSLSEYDQTLYEDPNTNRLHESL-NLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp ------------------------SEEEEEEEGGGGGSBESSSTTSBHHHHHH-HHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred ------------------------cEEEEeecccchhhhhcccchHHHHHHHH-HHHHHHHhCcccccCceEEeeecHHH
Confidence 99999999763 1 1133333 334444432 247899999999997
Q ss_pred CCchH-----HHHHHhhccCc-cccHHHHHHHHHHh-----------CCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 156 RDDKE-----TIEKLKEKKLA-PITYPQGLSMAKEI-----------GAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 156 ~~~~~-----~~~~~~~~~~~-~v~~~~~~~~~~~~-----------~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
....= ...-+...... .-+.+.+..|.+.. ..+.+..++|.+-.+++.+|..+.+.|
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 65310 00001111011 13456666666652 112456788888899999999887654
No 343
>KOG1954|consensus
Probab=97.19 E-value=0.0014 Score=57.23 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=30.8
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
||.||++||...-+--++.. ..+..++.+-+ .+-||.||.|.++..
T Consensus 182 ~D~IiLlfD~hKLDIsdEf~-~vi~aLkG~Ed--kiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 182 VDRIILLFDAHKLDISDEFK-RVIDALKGHED--KIRVVLNKADQVDTQ 227 (532)
T ss_pred ccEEEEEechhhccccHHHH-HHHHHhhCCcc--eeEEEeccccccCHH
Confidence 59999999986543333333 44556665533 356678999988763
No 344
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0015 Score=57.21 Aligned_cols=80 Identities=25% Similarity=0.274 Sum_probs=54.9
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEE------------c----CeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV------------D----GKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~------------~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|||||||.|.++...-. +.|.-++-+.-...+.+ . -....++++|++|-- ++
T Consensus 12 NVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV----------~G- 80 (372)
T COG0012 12 NVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLV----------KG- 80 (372)
T ss_pred CCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccC----------CC-
Confidence 79999999999977643 44544332111111111 1 124577888988732 23
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt 121 (228)
|..|.+++.-|.+..|.. |+++.|.|+.
T Consensus 81 -----------------As~GeGLGNkFL~~IRev-------------daI~hVVr~f 108 (372)
T COG0012 81 -----------------ASKGEGLGNKFLDNIREV-------------DAIIHVVRCF 108 (372)
T ss_pred -----------------cccCCCcchHHHHhhhhc-------------CeEEEEEEec
Confidence 378999999999999987 9999999986
No 345
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.15 E-value=0.0041 Score=53.17 Aligned_cols=87 Identities=25% Similarity=0.268 Sum_probs=57.4
Q ss_pred CCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
+.|-.++|+.+.+|+-=..+.+.++-..... ++..+|+.||+||.+..+. .. .+.....+.+| .+
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~----------~~--~~~~~~y~~~g-y~ 143 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEA----------AV--KELLREYEDIG-YP 143 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHH----------HH--HHHHHHHHhCC-ee
Confidence 3466666666666554333333555444443 5656666899999986431 11 34566777788 58
Q ss_pred EEEecccCCCCHHHHHHHHHHH
Q psy8274 190 YLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+.+|++++.+++++...+...
T Consensus 144 v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 144 VLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EEEecCcCcccHHHHHHHhcCC
Confidence 9999999999999998876543
No 346
>KOG1143|consensus
Probab=97.14 E-value=0.0048 Score=54.12 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=56.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH---HHHHHhh--------c-cCccccHHHHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE---TIEKLKE--------K-KLAPITYPQGL 179 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~--------~-~~~~v~~~~~~ 179 (228)
|..++|...+...+..- ++.+-.+... ++|.+++.+|+|+.++.. ..+++.. + ..+.-+..++.
T Consensus 276 h~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv 351 (591)
T KOG1143|consen 276 HFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAV 351 (591)
T ss_pred ceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHH
Confidence 66677777665433321 1233344433 799999999999998732 2222111 1 13445566677
Q ss_pred HHHHHh---CCceEEEecccCCCCHHHHH
Q psy8274 180 SMAKEI---GAVKYLECSALTQKGLKTVF 205 (228)
Q Consensus 180 ~~~~~~---~~~~~~evSa~~~~~v~~lf 205 (228)
..+++. ++.|+|.+|+.+|++++-+-
T Consensus 352 ~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 352 KAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHhccCCceeEEEEeecCccchhHHH
Confidence 666664 56889999999999987553
No 347
>KOG0467|consensus
Probab=97.11 E-value=0.0009 Score=63.00 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=44.8
Q ss_pred eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEE
Q psy8274 37 KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQI 116 (228)
Q Consensus 37 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 116 (228)
..+.+.++|+|||-+|.+...+..+-+ |++++
T Consensus 70 ~~~~~nlidspghvdf~sevssas~l~------------------------------------------------d~alv 101 (887)
T KOG0467|consen 70 KDYLINLIDSPGHVDFSSEVSSASRLS------------------------------------------------DGALV 101 (887)
T ss_pred CceEEEEecCCCccchhhhhhhhhhhc------------------------------------------------CCcEE
Confidence 457788999999999876554433333 99999
Q ss_pred EEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCC
Q psy8274 117 CFSLVN---PASFENVRAKWYPEVRHHCPSTPIILVGTKLDL 155 (228)
Q Consensus 117 v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 155 (228)
+.|+.. ..++.-+++.|. ++..++||.||+|.
T Consensus 102 lvdvvegv~~qt~~vlrq~~~-------~~~~~~lvinkidr 136 (887)
T KOG0467|consen 102 LVDVVEGVCSQTYAVLRQAWI-------EGLKPILVINKIDR 136 (887)
T ss_pred EEeeccccchhHHHHHHHHHH-------ccCceEEEEehhhh
Confidence 999864 344444443343 35677889999994
No 348
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0017 Score=55.20 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=52.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH------Hh
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK------EI 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~ 185 (228)
|.+++|.=..-.+.++-+..-++ . +-=++|.||.|+......... ...+..+.. .|
T Consensus 166 Dt~~~v~~pg~GD~~Q~iK~Gim----E----iaDi~vINKaD~~~A~~a~r~----------l~~al~~~~~~~~~~~W 227 (323)
T COG1703 166 DTFLVVMIPGAGDDLQGIKAGIM----E----IADIIVINKADRKGAEKAARE----------LRSALDLLREVWRENGW 227 (323)
T ss_pred ceEEEEecCCCCcHHHHHHhhhh----h----hhheeeEeccChhhHHHHHHH----------HHHHHHhhcccccccCC
Confidence 88888876655555555431111 1 222677899996654221111 111112221 12
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
. .+.+.+||..|.|++++++.+.+.......
T Consensus 228 ~-ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 228 R-PPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred C-CceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 3 689999999999999999999886654333
No 349
>KOG2486|consensus
Probab=97.09 E-value=0.00078 Score=56.66 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=44.7
Q ss_pred eEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCcc-----ccHHHHHHHHHHhCC
Q psy8274 113 VFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAP-----ITYPQGLSMAKEIGA 187 (228)
Q Consensus 113 ~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~ 187 (228)
-++++.|++.+-.-.+. ..+..+.+. ++|..+|.||||...... ....+. .......+.+..-.
T Consensus 222 ~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~------~~~kKp~~~i~~~f~~l~~~~f~~~- 290 (320)
T KOG2486|consen 222 RVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVK------RTGKKPGLNIKINFQGLIRGVFLVD- 290 (320)
T ss_pred eeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhcc------ccccCccccceeehhhccccceecc-
Confidence 34455566543221111 123344444 799999999999764310 000000 11111111111112
Q ss_pred ceEEEecccCCCCHHHHHHHHHH
Q psy8274 188 VKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
.++..+|+.++.|+++++-.+..
T Consensus 291 ~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 291 LPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred CCceeeecccccCceeeeeehhh
Confidence 46778999999999988765544
No 350
>KOG1491|consensus
Probab=96.91 E-value=0.0032 Score=54.43 Aligned_cols=80 Identities=26% Similarity=0.277 Sum_probs=55.6
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEc---------------CeEEeeeeeeCCCCcccccCCCCcccccc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVD---------------GKPINLGLWDTAGQEDYDRLRPLSYPQTG 64 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~---------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 64 (228)
|||||||.|.+++.... +.|.-++-+.-..++.+. -....+.++|++|-- ++
T Consensus 30 NvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv----------kG-- 97 (391)
T KOG1491|consen 30 NVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV----------KG-- 97 (391)
T ss_pred CCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc----------cC--
Confidence 79999999999987664 333333322222233331 124578888888742 22
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt 121 (228)
|.+|.+++..|..+.|+. |+++.|.++.
T Consensus 98 ----------------As~G~GLGN~FLs~iR~v-------------DaifhVVr~f 125 (391)
T KOG1491|consen 98 ----------------ASAGEGLGNKFLSHIRHV-------------DAIFHVVRAF 125 (391)
T ss_pred ----------------cccCcCchHHHHHhhhhc-------------cceeEEEEec
Confidence 378999999999999997 9999998875
No 351
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.88 E-value=0.0034 Score=55.37 Aligned_cols=80 Identities=25% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCChhhhHHhhhhCCC-C-CCCCceeeeccceeEEEcCe---------------EEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAF-P-GEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|||||||.+.+++... . +.|..|+.+.....+.+.+. ...+++.|+||-.. +
T Consensus 12 n~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~----------g- 80 (368)
T TIGR00092 12 NVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVG----------G- 80 (368)
T ss_pred CCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccccc----------c-
Confidence 7999999999997765 2 34544433333333333321 23567778887422 1
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt 121 (228)
+..|.+++..|..+++.. |++++|.|..
T Consensus 81 -----------------As~g~Glgn~fL~~ir~~-------------d~l~hVvr~f 108 (368)
T TIGR00092 81 -----------------ASKGEGLGNQFLANIREV-------------DIIQHVVRCF 108 (368)
T ss_pred -----------------hhcccCcchHHHHHHHhC-------------CEEEEEEeCC
Confidence 245667788888888776 9999999985
No 352
>KOG3887|consensus
Probab=96.88 E-value=0.0065 Score=50.33 Aligned_cols=97 Identities=14% Similarity=0.207 Sum_probs=52.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHh---hhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVR---HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 187 (228)
.+.++|.|.-+. -.+.+. .+...+. +.++++.+=+...|.|-....-.++. +|.+...-...++. .|.
T Consensus 103 gALifvIDaQdd-y~eala-~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kiet-----qrdI~qr~~d~l~d-~gle 174 (347)
T KOG3887|consen 103 GALIFVIDAQDD-YMEALA-RLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIET-----QRDIHQRTNDELAD-AGLE 174 (347)
T ss_pred CeEEEEEechHH-HHHHHH-HHHHHhhheeecCCCceEEEEEEeccCCchhhhhhh-----HHHHHHHhhHHHHh-hhhc
Confidence 899999997542 222222 2222222 23567777788999997654321111 11111111112222 121
Q ss_pred ---ceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 188 ---VKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 188 ---~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
..|+ ..+-..+.+-++|.+++++++.+-|
T Consensus 175 ~v~vsf~-LTSIyDHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 175 KVQVSFY-LTSIYDHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred cceEEEE-EeeecchHHHHHHHHHHHHHhhhch
Confidence 2344 4455668899999999998876544
No 353
>KOG1487|consensus
Probab=96.79 E-value=0.0079 Score=50.36 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCC
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQ 49 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~ 49 (228)
.||||||+..+..-.- .+.|..|.-......+...+. ++++.|.||-
T Consensus 69 SvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga--Kiqlldlpgi 116 (358)
T KOG1487|consen 69 SVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA--KIQLLDLPGI 116 (358)
T ss_pred ccchhhhhhhhcCCCCccccccceeEEEecceEecccc--ceeeecCcch
Confidence 4899999999885432 345555555555555555564 5677899974
No 354
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.74 E-value=0.01 Score=52.23 Aligned_cols=93 Identities=18% Similarity=0.119 Sum_probs=53.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHH------HHhhcc----CccccHHHHH--
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIE------KLKEKK----LAPITYPQGL-- 179 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~------~~~~~~----~~~v~~~~~~-- 179 (228)
|-.+++...+|.-+-.--+ ++ -...- -..|+|+|.+|+|+........ ...... ...-+..++.
T Consensus 228 dYglLvVaAddG~~~~tkE-HL-gi~~a--~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~a 303 (527)
T COG5258 228 DYGLLVVAADDGVTKMTKE-HL-GIALA--MELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLA 303 (527)
T ss_pred ceEEEEEEccCCcchhhhH-hh-hhhhh--hcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHh
Confidence 8889999988865543322 22 12111 2689999999999987643221 111111 1112222231
Q ss_pred HHHHHh--CCceEEEecccCCCCHHHHHHHH
Q psy8274 180 SMAKEI--GAVKYLECSALTQKGLKTVFDEA 208 (228)
Q Consensus 180 ~~~~~~--~~~~~~evSa~~~~~v~~lf~~l 208 (228)
..+-+. +..|+|.+|+.+|+|++-+.+-+
T Consensus 304 a~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 304 AKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred hhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 112222 36899999999999987554443
No 355
>KOG0460|consensus
Probab=96.62 E-value=0.042 Score=47.81 Aligned_cols=89 Identities=21% Similarity=0.266 Sum_probs=50.5
Q ss_pred ceEEEEEecCCh---hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-
Q psy8274 112 DVFQICFSLVNP---ASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 187 (228)
|+.|+|...+|. ++=+++. .-++. .-.-+++..||.|++++.+..+. +. -|...+..++|+
T Consensus 142 DGaILVVaatDG~MPQTrEHlL-----LArQV-GV~~ivvfiNKvD~V~d~e~leL--------VE-mE~RElLse~gf~ 206 (449)
T KOG0460|consen 142 DGAILVVAATDGPMPQTREHLL-----LARQV-GVKHIVVFINKVDLVDDPEMLEL--------VE-MEIRELLSEFGFD 206 (449)
T ss_pred CceEEEEEcCCCCCcchHHHHH-----HHHHc-CCceEEEEEecccccCCHHHHHH--------HH-HHHHHHHHHcCCC
Confidence 999999999984 3333331 22222 22346788899999976554443 22 235566666653
Q ss_pred ---ceEEEeccc---CCC----C---HHHHHHHHHHHhcCC
Q psy8274 188 ---VKYLECSAL---TQK----G---LKTVFDEAIRAVLCP 215 (228)
Q Consensus 188 ---~~~~evSa~---~~~----~---v~~lf~~l~~~i~~~ 215 (228)
+|++.=||+ .|. | |.+|++.+-..|..+
T Consensus 207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 456665554 442 1 445555555544443
No 356
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.51 E-value=0.067 Score=46.53 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=27.7
Q ss_pred CCCCCceEEEEEecCChhhHHH-HHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 107 KKKRCDVFQICFSLVNPASFEN-VRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 107 ~~~~~d~vi~v~Dvt~~~s~~~-~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
..-..|+++-|.|+..-..... +.+.....+... =+||.||.|+.++.
T Consensus 113 ~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv~~~ 161 (323)
T COG0523 113 DGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLVDAE 161 (323)
T ss_pred cceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCCCHH
Confidence 4445599999999875433222 221222222211 26778999999863
No 357
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.40 E-value=0.011 Score=46.69 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=29.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|.|+.++.+-.+- .+.+.+.-...+.|+++|.||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~--~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCP--QVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCH--HHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 789999999876443221 223332111235899999999999764
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.24 E-value=0.0063 Score=51.69 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=27.5
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
|||||||+|++.+..... ....++. ....+.++. .+.++||||.-
T Consensus 128 nvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~~ 174 (276)
T TIGR03596 128 NVGKSTLINRLAGKKVAKVGNRPGVTK--GQQWIKLSD---GLELLDTPGIL 174 (276)
T ss_pred CCCHHHHHHHHhCCCccccCCCCCeec--ceEEEEeCC---CEEEEECCCcc
Confidence 799999999999765321 2111111 122334433 46899999973
No 359
>KOG4273|consensus
Probab=96.19 E-value=0.042 Score=45.83 Aligned_cols=97 Identities=15% Similarity=0.314 Sum_probs=60.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch-----HHHHHH---------------------
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK-----ETIEKL--------------------- 165 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~-----~~~~~~--------------------- 165 (228)
.++++|||.+...++..+. .|+....-..-+ -++-+|||.|.+... ..-+..
T Consensus 80 ~a~vmvfdlse~s~l~alq-dwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQ-DWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred eeEEEEEeccchhhhHHHH-hhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 8999999999999999987 887653322112 235668999976421 000000
Q ss_pred h------hccCccccHHHHHHHHHHhCCceEEEecccCC------------CCHHHHHHHHHHH
Q psy8274 166 K------EKKLAPITYPQGLSMAKEIGAVKYLECSALTQ------------KGLKTVFDEAIRA 211 (228)
Q Consensus 166 ~------~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~------------~~v~~lf~~l~~~ 211 (228)
+ ...........+..||.++| +.|+|.++.+. .||+.+|..+-..
T Consensus 158 egssllgsedasldirga~lewc~e~~-~efieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHG-FEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcC-ceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 0 00011233445678888999 58999998543 3777777766543
No 360
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.19 E-value=0.044 Score=47.57 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=12.8
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||+++++..
T Consensus 14 GaGKTTll~~ll~~ 27 (318)
T PRK11537 14 GAGKTTLLRHILNE 27 (318)
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999999965
No 361
>KOG0465|consensus
Probab=96.12 E-value=0.053 Score=50.37 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHh----CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 173 ITYPQGLSMAKEI----GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 173 v~~~~~~~~~~~~----~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.+.++.....+.. .+.|.+-=||..|.||+-+++.++..+..+.+
T Consensus 264 ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~E 312 (721)
T KOG0465|consen 264 PSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSE 312 (721)
T ss_pred CCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhh
Confidence 5555555555542 45677888999999999999999999876544
No 362
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.10 E-value=0.025 Score=57.32 Aligned_cols=47 Identities=28% Similarity=0.312 Sum_probs=32.1
Q ss_pred CceEEEEEecCCh-----hhH----HHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 111 CDVFQICFSLVNP-----ASF----ENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 111 ~d~vi~v~Dvt~~-----~s~----~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
.+|||++.|+.+- +.. ..+. ..+.++.+.. -..||.||.||+|+..-
T Consensus 202 lnGvil~vs~~~Ll~~~~~~~~~~a~~lR-~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 202 LNGVVVTVSLADLLTADPAERKAHARAIR-QRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred CCeEEEEEEHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 3999999998742 211 1222 4455555554 37999999999999864
No 363
>KOG0466|consensus
Probab=96.02 E-value=0.019 Score=49.15 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=59.7
Q ss_pred ceEEEEEecCC----hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVN----PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~----~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|+.+++...+. |.+-+++. .. ++.+ -.-++++-||+||..++.-. ...++.++|.+.-
T Consensus 150 DaalLlIA~NEsCPQPQTsEHLa-av--eiM~---LkhiiilQNKiDli~e~~A~----------eq~e~I~kFi~~t~a 213 (466)
T KOG0466|consen 150 DAALLLIAGNESCPQPQTSEHLA-AV--EIMK---LKHIIILQNKIDLIKESQAL----------EQHEQIQKFIQGTVA 213 (466)
T ss_pred hhhhhhhhcCCCCCCCchhhHHH-HH--HHhh---hceEEEEechhhhhhHHHHH----------HHHHHHHHHHhcccc
Confidence 88888777653 44555443 11 1222 24578889999999865422 2344556666643
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.-.|++++||.-+.|++.+.+-+...|.-+-
T Consensus 214 e~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 214 EGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred CCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 2258999999999999999999999887543
No 364
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.95 E-value=0.01 Score=50.63 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=27.6
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
|||||||+|++.+.... ....|.+... ...+.+++ .+.++||||-.
T Consensus 131 nvGKSsliN~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 131 NVGKSTLINRLAGKKIAKTGNRPGVTKA-QQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CCCHHHHHHHHhcCCccccCCCCCeEEE-EEEEEeCC---cEEEEECCCcC
Confidence 79999999999976542 1112221111 12334443 46799999974
No 365
>KOG0448|consensus
Probab=95.85 E-value=0.027 Score=52.80 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=28.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|.+..+..+.... +++...... ++-|+++-||+|....++
T Consensus 234 DVfVlV~NaEntlt~sek--~Ff~~vs~~--KpniFIlnnkwDasase~ 278 (749)
T KOG0448|consen 234 DVFVLVVNAENTLTLSEK--QFFHKVSEE--KPNIFILNNKWDASASEP 278 (749)
T ss_pred CeEEEEecCccHhHHHHH--HHHHHhhcc--CCcEEEEechhhhhcccH
Confidence 888888777665555443 232222222 455778889999987643
No 366
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.81 E-value=0.019 Score=44.51 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=13.1
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++++....
T Consensus 10 GsGKTtl~~~l~~~~ 24 (158)
T cd03112 10 GAGKTTLLNHILTEQ 24 (158)
T ss_pred CCCHHHHHHHHHhcc
Confidence 799999999998753
No 367
>PRK14974 cell division protein FtsY; Provisional
Probab=95.79 E-value=0.059 Score=47.16 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=40.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.+++|.|++... +.+. ....+... -.+--++.||.|..... --+..++...+ .|+.
T Consensus 254 d~~iLVl~a~~g~--d~~~--~a~~f~~~--~~~~giIlTKlD~~~~~----------------G~~ls~~~~~~-~Pi~ 310 (336)
T PRK14974 254 DLVIFVGDALAGN--DAVE--QAREFNEA--VGIDGVILTKVDADAKG----------------GAALSIAYVIG-KPIL 310 (336)
T ss_pred ceEEEeeccccch--hHHH--HHHHHHhc--CCCCEEEEeeecCCCCc----------------cHHHHHHHHHC-cCEE
Confidence 8889999987543 2221 11222211 12235667999987531 22445555567 5888
Q ss_pred EecccCCCCHHHHH
Q psy8274 192 ECSALTQKGLKTVF 205 (228)
Q Consensus 192 evSa~~~~~v~~lf 205 (228)
.++ +|.+++++.
T Consensus 311 ~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 311 FLG--VGQGYDDLI 322 (336)
T ss_pred EEe--CCCChhhcc
Confidence 886 789998765
No 368
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.79 E-value=0.0097 Score=51.75 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=28.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
|||||||||++++.... ...+.-+.+-. ..+.++. .+.++||||--.
T Consensus 142 NVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~ 189 (322)
T COG1161 142 NVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIP 189 (322)
T ss_pred CCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCC---CeEEecCCCcCC
Confidence 79999999999987652 11111132222 2334444 278899999643
No 369
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.59 E-value=0.031 Score=44.86 Aligned_cols=81 Identities=17% Similarity=0.070 Sum_probs=51.5
Q ss_pred eEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-CCceEE
Q psy8274 113 VFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-GAVKYL 191 (228)
Q Consensus 113 ~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~ 191 (228)
.-++|.|++..+- ..++-.+.+.+ .=++|.||.||...- ..+.+...+-+++. +-.+++
T Consensus 120 ~~v~VidvteGe~---~P~K~gP~i~~-----aDllVInK~DLa~~v------------~~dlevm~~da~~~np~~~ii 179 (202)
T COG0378 120 LRVVVIDVTEGED---IPRKGGPGIFK-----ADLLVINKTDLAPYV------------GADLEVMARDAKEVNPEAPII 179 (202)
T ss_pred eEEEEEECCCCCC---CcccCCCceeE-----eeEEEEehHHhHHHh------------CccHHHHHHHHHHhCCCCCEE
Confidence 6778888875421 11121222211 227889999998752 23434444444443 335899
Q ss_pred EecccCCCCHHHHHHHHHHHhc
Q psy8274 192 ECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++|+++|.|+++++.++.....
T Consensus 180 ~~n~ktg~G~~~~~~~i~~~~~ 201 (202)
T COG0378 180 FTNLKTGEGLDEWLRFIEPQAL 201 (202)
T ss_pred EEeCCCCcCHHHHHHHHHhhcc
Confidence 9999999999999999877643
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.57 E-value=0.096 Score=44.46 Aligned_cols=69 Identities=13% Similarity=0.023 Sum_probs=42.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.+++|.|.+. ..+.+. . ...+.+.. .+--+|.||.|.... .-.+..+....+ .|+.
T Consensus 192 ~~~~LVl~a~~--~~~~~~-~-~~~f~~~~--~~~g~IlTKlDe~~~----------------~G~~l~~~~~~~-~Pi~ 248 (272)
T TIGR00064 192 DEVLLVLDATT--GQNALE-Q-AKVFNEAV--GLTGIILTKLDGTAK----------------GGIILSIAYELK-LPIK 248 (272)
T ss_pred ceEEEEEECCC--CHHHHH-H-HHHHHhhC--CCCEEEEEccCCCCC----------------ccHHHHHHHHHC-cCEE
Confidence 89999999974 333332 2 22222221 234577899998653 223455566667 5888
Q ss_pred EecccCCCCHHHHH
Q psy8274 192 ECSALTQKGLKTVF 205 (228)
Q Consensus 192 evSa~~~~~v~~lf 205 (228)
.++ +|.+++++-
T Consensus 249 ~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 249 FIG--VGEKIDDLA 260 (272)
T ss_pred EEe--CCCChHhCc
Confidence 887 788887653
No 371
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.43 E-value=0.044 Score=41.47 Aligned_cols=43 Identities=9% Similarity=0.075 Sum_probs=29.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|.++++.+.+ ..++.... ..++.+.+.....++.+|.|+.+..
T Consensus 68 D~vviv~~~~-~~s~~~~~-~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 68 DEVIVVTTPE-PTSITDAY-ALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CeEEEEcCCC-hhHHHHHH-HHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 9999998875 55665554 4555555444456778899999744
No 372
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.29 E-value=0.02 Score=50.52 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.8
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|||||||+|+++..
T Consensus 164 nvGKStliN~l~~~ 177 (360)
T TIGR03597 164 NVGKSSLINKLLKQ 177 (360)
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999974
No 373
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.28 E-value=0.14 Score=46.21 Aligned_cols=41 Identities=15% Similarity=-0.027 Sum_probs=24.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+-+++|.|.+-...-.. ....+.+. -.+--+|.||.|....
T Consensus 214 ~e~lLVlda~~Gq~a~~----~a~~F~~~--~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 214 DNIIFVMDGSIGQAAEA----QAKAFKDS--VDVGSVIITKLDGHAK 254 (429)
T ss_pred cEEEEEeccccChhHHH----HHHHHHhc--cCCcEEEEECccCCCC
Confidence 88999999875422221 12233222 2345677899998653
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.20 E-value=0.25 Score=42.95 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=41.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
+..++|.|++.. .+.+. +. ....+. -.+--+|.||.|.... .-.+...+...+ .|+.
T Consensus 234 ~~~~LVl~a~~g--~~~~~-~a-~~f~~~--~~~~giIlTKlD~t~~----------------~G~~l~~~~~~~-~Pi~ 290 (318)
T PRK10416 234 HEVLLVLDATTG--QNALS-QA-KAFHEA--VGLTGIILTKLDGTAK----------------GGVVFAIADELG-IPIK 290 (318)
T ss_pred ceEEEEEECCCC--hHHHH-HH-HHHHhh--CCCCEEEEECCCCCCC----------------ccHHHHHHHHHC-CCEE
Confidence 778899998842 33332 21 121111 1234677899996542 223556666778 5888
Q ss_pred EecccCCCCHHHHH
Q psy8274 192 ECSALTQKGLKTVF 205 (228)
Q Consensus 192 evSa~~~~~v~~lf 205 (228)
.++ +|++++++-
T Consensus 291 ~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 291 FIG--VGEGIDDLQ 302 (318)
T ss_pred EEe--CCCChhhCc
Confidence 887 888887763
No 375
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.08 E-value=0.016 Score=45.28 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.5
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|||||||+|.++...
T Consensus 45 GvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 45 GVGKSSLINALLPEA 59 (161)
T ss_dssp TSSHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHhhc
Confidence 899999999999763
No 376
>PRK12288 GTPase RsgA; Reviewed
Probab=94.97 E-value=0.024 Score=49.84 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.3
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|||||||+|+|+...
T Consensus 215 gVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 215 GVGKSSLINALLPEA 229 (347)
T ss_pred CCCHHHHHHHhcccc
Confidence 899999999999653
No 377
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.98 Score=35.40 Aligned_cols=47 Identities=30% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCC-CC
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTA-GQ 49 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~-g~ 49 (228)
|||||||+.++...-- ..-.+++-.+...+.-+|+.+-+.+.|+. |.
T Consensus 15 GvGKtTl~~ki~e~L~--~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~ 62 (179)
T COG1618 15 GVGKTTLVLKIAEKLR--EKGYKVGGFITPEVREGGKRIGFKIVDLATGE 62 (179)
T ss_pred CccHHHHHHHHHHHHH--hcCceeeeEEeeeeecCCeEeeeEEEEccCCc
Confidence 8999999998874211 11133444455556668899999999988 44
No 378
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=94.68 E-value=0.028 Score=48.07 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.7
Q ss_pred CCChhhhHHhhhhCCC
Q psy8274 1 AVGKTCLLISYTTNAF 16 (228)
Q Consensus 1 gvGKTsli~~~~~~~~ 16 (228)
|||||||+|.+++...
T Consensus 171 g~GKSTlin~l~~~~~ 186 (287)
T cd01854 171 GVGKSTLINALLPDLD 186 (287)
T ss_pred CCCHHHHHHHHhchhh
Confidence 8999999999997543
No 379
>PRK12289 GTPase RsgA; Reviewed
Probab=94.51 E-value=0.039 Score=48.61 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=13.1
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|||||||+|.++...
T Consensus 182 gVGKSSLIN~L~~~~ 196 (352)
T PRK12289 182 GVGKSSLINRLIPDV 196 (352)
T ss_pred CCCHHHHHHHHcCcc
Confidence 899999999999653
No 380
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=94.47 E-value=0.13 Score=42.27 Aligned_cols=53 Identities=25% Similarity=0.196 Sum_probs=30.8
Q ss_pred CCChhhhHHhhhhC--CCCC--CCCceeeeccceeEEE-cCeEEeeeeeeCCCCcccc
Q psy8274 1 AVGKTCLLISYTTN--AFPG--EYIPTVFDNYSANVMV-DGKPINLGLWDTAGQEDYD 53 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~--~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~ 53 (228)
++|||+|+|++++. .|.- ...++...-+-....+ .+....+.++||+|.....
T Consensus 17 ~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~ 74 (224)
T cd01851 17 SSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRE 74 (224)
T ss_pred CCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccc
Confidence 68999999999988 6631 1122221111111111 1234678899999976543
No 381
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=94.40 E-value=0.046 Score=45.61 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.2
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|||||||+|++....
T Consensus 130 gvGKStLiN~L~~~~ 144 (245)
T TIGR00157 130 GVGKSSLINALDPSV 144 (245)
T ss_pred CCCHHHHHHHHhhhh
Confidence 899999999999653
No 382
>KOG2743|consensus
Probab=94.40 E-value=0.064 Score=45.94 Aligned_cols=16 Identities=38% Similarity=0.341 Sum_probs=14.0
Q ss_pred CCChhhhHHhhhhCCC
Q psy8274 1 AVGKTCLLISYTTNAF 16 (228)
Q Consensus 1 gvGKTsli~~~~~~~~ 16 (228)
|+|||||+|.++.+..
T Consensus 67 GaGKtTLLn~Il~~~h 82 (391)
T KOG2743|consen 67 GAGKTTLLNYILTGQH 82 (391)
T ss_pred cCChHHHHHHHHccCC
Confidence 8999999999997753
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=94.38 E-value=0.037 Score=48.94 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.6
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|||||||+|+++..
T Consensus 170 NvGKSTLiN~L~~~ 183 (365)
T PRK13796 170 NVGKSTLINRIIKE 183 (365)
T ss_pred CCcHHHHHHHHHhh
Confidence 89999999999854
No 384
>KOG0099|consensus
Probab=94.20 E-value=0.075 Score=44.69 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=48.9
Q ss_pred EeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEE
Q psy8274 39 INLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118 (228)
Q Consensus 39 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 118 (228)
+.+.++|++||.+-+.-|-.++.+. .++|||.
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndv------------------------------------------------tAiifv~ 233 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDV------------------------------------------------TAIIFVV 233 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCc------------------------------------------------cEEEEEE
Confidence 5788999999998888887788877 8999998
Q ss_pred ecCC--------h--hhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 119 SLVN--------P--ASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 119 Dvt~--------~--~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
..++ + -.+.+.. .+...+.+.+ ..+.+||..||.|+..+
T Consensus 234 acSsyn~vlrED~~qNRL~EaL-~LFksiWnNRwL~tisvIlFLNKqDllae 284 (379)
T KOG0099|consen 234 ACSSYNMVLREDNQQNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQDLLAE 284 (379)
T ss_pred eccchhhhhhcCCchhHHHHHH-HHHHHHHhhhHHhhhheeEEecHHHHHHH
Confidence 7653 1 1122222 3333333322 35789999999998764
No 385
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.08 E-value=0.05 Score=46.61 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=26.9
Q ss_pred CCChhhhHHhhhhCCC------CCCC-CceeeeccceeEEEcCeEEeeeeeeCCCCcccc
Q psy8274 1 AVGKTCLLISYTTNAF------PGEY-IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD 53 (228)
Q Consensus 1 gvGKTsli~~~~~~~~------~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 53 (228)
|||||||+|++....- .+.. ......+...-+.+++. =.|.||||...+.
T Consensus 174 GVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 174 GVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred CCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 8999999999985321 1111 11111222333444321 2567999976554
No 386
>KOG0469|consensus
Probab=93.87 E-value=0.13 Score=47.06 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=21.8
Q ss_pred cCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
++..+.+.++|.||+-+|.+-....++-.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVT 122 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVT 122 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEec
Confidence 46678899999999999876555544444
No 387
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=93.78 E-value=0.34 Score=37.93 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=41.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.++++...+ ..++..+. .+++.+.+. +.|+.+|.||.|.... ...++..+++.+|+ +++
T Consensus 116 D~vliv~~~~-~~~~~~~~-~~~~~l~~~--~~~~~vV~N~~~~~~~---------------~~~~~~~~~~~~~~-~vl 175 (179)
T cd03110 116 DAALLVTEPT-PSGLHDLE-RAVELVRHF--GIPVGVVINKYDLNDE---------------IAEEIEDYCEEEGI-PIL 175 (179)
T ss_pred CEEEEEecCC-cccHHHHH-HHHHHHHHc--CCCEEEEEeCCCCCcc---------------hHHHHHHHHHHcCC-CeE
Confidence 9999999876 44666665 666666655 5678899999997542 12356667777774 443
No 388
>PRK00098 GTPase RsgA; Reviewed
Probab=93.25 E-value=0.081 Score=45.47 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=13.1
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|||||||+|.+++..
T Consensus 174 gvGKStlin~l~~~~ 188 (298)
T PRK00098 174 GVGKSTLLNALAPDL 188 (298)
T ss_pred CCCHHHHHHHHhCCc
Confidence 899999999998653
No 389
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=93.15 E-value=0.19 Score=36.16 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=26.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhC-C-CCCEEEEEeC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHC-P-STPIILVGTK 152 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~-~~piilv~nK 152 (228)
|.++++.+. +..++..+. .+++.+++.. + ...+.+|.|+
T Consensus 66 D~vlvvv~~-~~~s~~~~~-~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 66 DRVFLVTQQ-DLPSIRNAK-RLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CeEEEEecC-ChHHHHHHH-HHHHHHHHcCCCCcCceEEEecC
Confidence 999999875 466777776 7777766653 2 3456677775
No 390
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=93.13 E-value=1.7 Score=34.36 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=62.4
Q ss_pred CCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
+.|-|+|+.|.+..-|+..++ .-+..+...+.--.+.++++-....+. ..+..++..+++..+.+ |
T Consensus 64 rIDlIVFvinl~sk~SL~~ve-~SL~~vd~~fflGKVCfl~t~a~~~~~------------~sv~~~~V~kla~~y~~-p 129 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVE-ASLSHVDPSFFLGKVCFLATNAGRESH------------CSVHPNEVRKLAATYNS-P 129 (176)
T ss_pred eeEEEEEEEecCCcccHHHHH-HHHhhCChhhhccceEEEEcCCCcccc------------cccCHHHHHHHHHHhCC-C
Confidence 359999999999999999887 444455433322234455555554443 45899999999999995 8
Q ss_pred EEEecccCCCCHHHHHHHHHHHh
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i 212 (228)
++.+.-.+.++...+=.++++.+
T Consensus 130 lL~~~le~~~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 130 LLFADLENEEGRTSLAQRLLRML 152 (176)
T ss_pred EEEeecccchHHHHHHHHHHHHH
Confidence 88887777766666666665543
No 391
>KOG0085|consensus
Probab=93.03 E-value=0.053 Score=44.79 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=44.3
Q ss_pred CCCCEEEEEeCCCCCCchHHHH----HHhhccCccccHHHHHHHHHHh----C-----CceEEEecccCCCCHHHHHHHH
Q psy8274 142 PSTPIILVGTKLDLRDDKETIE----KLKEKKLAPITYPQGLSMAKEI----G-----AVKYLECSALTQKGLKTVFDEA 208 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~----~-----~~~~~evSa~~~~~v~~lf~~l 208 (228)
.+.++|+..||-|+.++.--.. -+-++....-+.+.+..|.-++ + ++.-..++|.+-+|++-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 4789999999999987531100 0111112223334444444432 1 1223456778889999999999
Q ss_pred HHHhcCC
Q psy8274 209 IRAVLCP 215 (228)
Q Consensus 209 ~~~i~~~ 215 (228)
-..+++.
T Consensus 345 kDtiLq~ 351 (359)
T KOG0085|consen 345 KDTILQL 351 (359)
T ss_pred HHHHHHh
Confidence 9888764
No 392
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.02 E-value=0.2 Score=43.64 Aligned_cols=75 Identities=27% Similarity=0.266 Sum_probs=50.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|+|+-|.|+-++.+-..- .+.+.....|.++|+||.||.... +...=...+.+..+ ...+
T Consensus 36 d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~-------------~~~~W~~~~~~~~~-~~~~ 95 (322)
T COG1161 36 DVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKE-------------VTKKWKKYFKKEEG-IKPI 95 (322)
T ss_pred CEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHH-------------HHHHHHHHHHhcCC-CccE
Confidence 999999999988775432 444444456779999999999853 22222333333334 4577
Q ss_pred EecccCCCCHHHHHH
Q psy8274 192 ECSALTQKGLKTVFD 206 (228)
Q Consensus 192 evSa~~~~~v~~lf~ 206 (228)
.+++..+.+...+..
T Consensus 96 ~v~~~~~~~~~~i~~ 110 (322)
T COG1161 96 FVSAKSRQGGKKIRK 110 (322)
T ss_pred EEEeecccCccchHH
Confidence 888887777666664
No 393
>KOG1424|consensus
Probab=93.00 E-value=0.07 Score=48.66 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=30.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
||||||+||.+++..-.. ...|-| ..+..++.+.. .+.+.|+||--
T Consensus 324 NVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 324 NVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred CCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 799999999999876532 223333 22345555555 36778999953
No 394
>KOG1424|consensus
Probab=92.91 E-value=0.26 Score=45.11 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=47.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|+|+.+.|+-||--|..- .+..++...-+....+|+.||.||..+.. ...-..+.+..+ ++++
T Consensus 176 DivvqIVDARnPllfr~~--dLe~Yvke~d~~K~~~LLvNKaDLl~~~q--------------r~aWa~YF~~~n-i~~v 238 (562)
T KOG1424|consen 176 DIVVQIVDARNPLLFRSP--DLEDYVKEVDPSKANVLLVNKADLLPPEQ--------------RVAWAEYFRQNN-IPVV 238 (562)
T ss_pred ceEEEEeecCCccccCCh--hHHHHHhccccccceEEEEehhhcCCHHH--------------HHHHHHHHHhcC-ceEE
Confidence 999999999998777654 45555555545567788889999997531 111223444456 6888
Q ss_pred EecccC
Q psy8274 192 ECSALT 197 (228)
Q Consensus 192 evSa~~ 197 (228)
.-||..
T Consensus 239 f~SA~~ 244 (562)
T KOG1424|consen 239 FFSALA 244 (562)
T ss_pred EEeccc
Confidence 888886
No 395
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=92.81 E-value=0.29 Score=45.51 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=31.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETI 162 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~ 162 (228)
|.|+++.|..=.--.+-. .+++.+.++ ..| ++-|+++.||....+..
T Consensus 135 DLVlLlIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~stL 182 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNPSTL 182 (1077)
T ss_pred heeEEEeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccChHHH
Confidence 999999997643323332 455666666 444 56788999998765433
No 396
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.69 E-value=0.096 Score=43.98 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=45.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH----hCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE----IGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~ 187 (228)
|.+++|.-..-.+..+-+..-++ +. +=++|.||.|+......... ......+.+. |.
T Consensus 144 D~~v~v~~Pg~GD~iQ~~KaGim----Ei----aDi~vVNKaD~~gA~~~~~~----------l~~~l~l~~~~~~~W~- 204 (266)
T PF03308_consen 144 DTVVLVLVPGLGDEIQAIKAGIM----EI----ADIFVVNKADRPGADRTVRD----------LRSMLHLLREREDGWR- 204 (266)
T ss_dssp SEEEEEEESSTCCCCCTB-TTHH----HH-----SEEEEE--SHHHHHHHHHH----------HHHHHHHCSTSCTSB--
T ss_pred CeEEEEecCCCccHHHHHhhhhh----hh----ccEEEEeCCChHHHHHHHHH----------HHHHHhhccccccCCC-
Confidence 99999988776555544331222 11 22677899995543221111 1111222111 23
Q ss_pred ceEEEecccCCCCHHHHHHHHHHH
Q psy8274 188 VKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+++.+||.++.|++++++.+.+.
T Consensus 205 ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 205 PPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp -EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999988774
No 397
>KOG0464|consensus
Probab=92.48 E-value=0.024 Score=50.49 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=25.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|+++.|||.+-.-.-+-+. -|-.. .+ -++|-+...||+|...
T Consensus 127 dgavav~dasagve~qtlt-vwrqa-dk--~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 127 DGAVAVFDASAGVEAQTLT-VWRQA-DK--FKIPAHCFINKMDKLA 168 (753)
T ss_pred cCeEEEEeccCCcccceee-eehhc-cc--cCCchhhhhhhhhhhh
Confidence 9999999987532222222 33221 11 2578888889999664
No 398
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.23 E-value=1.4 Score=42.78 Aligned_cols=70 Identities=13% Similarity=0.009 Sum_probs=38.4
Q ss_pred ceEEEEEecCC-hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVN-PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~-~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+-+++|.|.+. .+.+..+. ..+.+...-.+-=+|.||.|.... .-.+..+....+ .|+
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~----~~f~~~~~~~i~glIlTKLDEt~~----------------~G~iL~i~~~~~-lPI 353 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVV----HAYRHGAGEDVDGCIITKLDEATH----------------LGPALDTVIRHR-LPV 353 (767)
T ss_pred CeEEEEECCCCcHHHHHHHH----HHHhhcccCCCCEEEEeccCCCCC----------------ccHHHHHHHHHC-CCe
Confidence 66788989874 33343332 222221110122356799997653 234566677777 477
Q ss_pred EEecccCCCCH-HHH
Q psy8274 191 LECSALTQKGL-KTV 204 (228)
Q Consensus 191 ~evSa~~~~~v-~~l 204 (228)
..+ -+|.+| +++
T Consensus 354 ~yi--t~GQ~VPdDL 366 (767)
T PRK14723 354 HYV--STGQKVPEHL 366 (767)
T ss_pred EEE--ecCCCChhhc
Confidence 666 356666 443
No 399
>KOG0393|consensus
Probab=92.17 E-value=0.094 Score=42.27 Aligned_cols=40 Identities=80% Similarity=1.144 Sum_probs=38.5
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 103 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 103 (228)
+..+|++++|..++++|+++++++.++|.+.+++.+.+.+
T Consensus 144 g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 144 GLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred HHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999998765
No 400
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=92.15 E-value=0.73 Score=42.72 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=69.5
Q ss_pred ccccccch-hHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC----------------C----hhhHHHHHHhhHHHHhh
Q psy8274 81 ALTQKGLK-TVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV----------------N----PASFENVRAKWYPEVRH 139 (228)
Q Consensus 81 ~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt----------------~----~~s~~~~~~~~~~~l~~ 139 (228)
+..|-+++ |.|.+..-+..+..| |++++|--+- | .+++.++. ..++.+++
T Consensus 300 aGFGaDlGaEKF~dIkcr~~gl~P--------~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~NL~-RHIenvr~ 370 (557)
T PRK13505 300 AGFGADLGAEKFLDIKCRKAGLKP--------DAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFANLE-RHIENIRK 370 (557)
T ss_pred ccccCCCCCceeeeeecccCCCCC--------CEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHHHHH-HHHHHHHH
Confidence 33443332 345555555556667 9999987432 1 23455665 55666666
Q ss_pred hCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEec--ccCCCCHHHHHHHHHHHhcC
Q psy8274 140 HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECS--ALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 140 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evS--a~~~~~v~~lf~~l~~~i~~ 214 (228)
+ ++|++|+.||.|...+. ..+....+|++.|+ ++..+. ++-|+|-.++-+.+.+++.+
T Consensus 371 F--GvPvVVAINKFd~DTe~--------------Ei~~I~~~c~e~Gv-~va~~~~~~~Gg~Gai~LA~aVveA~~~ 430 (557)
T PRK13505 371 F--GVPVVVAINKFVTDTDA--------------EIAALKELCEELGV-EVALSEVWAKGGEGGVELAEKVVELIEE 430 (557)
T ss_pred c--CCCEEEEEeCCCCCCHH--------------HHHHHHHHHHHcCC-CEEEecccccCCcchHHHHHHHHHHHhc
Confidence 5 89999999999988752 23456788888884 665332 44667778888888777663
No 401
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=92.05 E-value=1.2 Score=34.42 Aligned_cols=43 Identities=5% Similarity=-0.081 Sum_probs=28.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|.++++.+.+ ..++..+. .+++.+.+. ......+|.|+.|...
T Consensus 86 d~viiv~~~~-~~s~~~~~-~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 86 DEALLVTTPE-ISSLRDAD-RVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CcEEEEeCCC-cchHHHHH-HHHHHHHHc-CCceEEEEEeCCcccc
Confidence 9999998865 45666665 556666553 2234568899998654
No 402
>PRK13695 putative NTPase; Provisional
Probab=91.96 E-value=1.6 Score=34.04 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=30.0
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..|++++.+|..... ...+.....+ ..++++ +.+|=+++.+++.+.+.
T Consensus 126 ~~~~i~v~h~~~~~~-------------------~~~~i~~~~~-~~i~~~---~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 126 EKPVIATLHRRSVHP-------------------FVQEIKSRPG-GRVYEL---TPENRDSLPFEILNRLK 173 (174)
T ss_pred CCeEEEEECchhhHH-------------------HHHHHhccCC-cEEEEE---cchhhhhHHHHHHHHHh
Confidence 689999988753221 1233444445 367777 44566788888888664
No 403
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=91.88 E-value=0.38 Score=34.02 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=15.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYP 135 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~ 135 (228)
|.++++.+. +..++..+. .+++
T Consensus 63 d~viv~~~~-~~~s~~~~~-~~~~ 84 (104)
T cd02042 63 DLVLIPVQP-SPLDLDGLE-KLLE 84 (104)
T ss_pred CEEEEeccC-CHHHHHHHH-HHHH
Confidence 999999886 466776665 5544
No 404
>KOG3929|consensus
Probab=91.71 E-value=0.29 Score=41.17 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=25.8
Q ss_pred CChhhhHHhhhhCCCCCCCCceeeeccc--eeEEEcCeEEeeeeeeCCCCcc
Q psy8274 2 VGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 2 vGKTsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
-|+|++|+++....- ....||..-.|. .+..-+..+=...+|+.+|-..
T Consensus 54 ~~~tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~ 104 (363)
T KOG3929|consen 54 GGKTTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTS 104 (363)
T ss_pred CceeEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCcc
Confidence 467888888764332 234455533333 2222222233467788887544
No 405
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.70 E-value=2.2 Score=37.99 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
||||||++.++...
T Consensus 147 GvGKTTtiakLA~~ 160 (374)
T PRK14722 147 GVGKTTTTAKLAAR 160 (374)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998753
No 406
>KOG0780|consensus
Probab=91.61 E-value=0.34 Score=43.04 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=13.5
Q ss_pred ceEEEEEecCChhhHHHH
Q psy8274 112 DVFQICFSLVNPASFENV 129 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~ 129 (228)
|-+|||.|.+-..+-...
T Consensus 215 d~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 215 DEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred CeEEEEEeccccHhHHHH
Confidence 999999999865554443
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.49 E-value=1.7 Score=39.26 Aligned_cols=64 Identities=8% Similarity=-0.059 Sum_probs=35.6
Q ss_pred ceEEEEEecCC-hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVN-PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~-~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
.-.++|.|.+. ...+..+ + ..+..-.+-=++.||.|.... .-.+..++...+ .|+
T Consensus 301 ~~~~LVl~at~~~~~~~~~----~---~~f~~~~~~~~I~TKlDEt~~----------------~G~~l~~~~~~~-lPi 356 (420)
T PRK14721 301 VKHLLLLNATSSGDTLDEV----I---SAYQGHGIHGCIITKVDEAAS----------------LGIALDAVIRRK-LVL 356 (420)
T ss_pred ceEEEEEcCCCCHHHHHHH----H---HHhcCCCCCEEEEEeeeCCCC----------------ccHHHHHHHHhC-CCE
Confidence 56778888873 3333322 2 222211222356799997653 334566777777 466
Q ss_pred EEecccCCCCH
Q psy8274 191 LECSALTQKGL 201 (228)
Q Consensus 191 ~evSa~~~~~v 201 (228)
..++ +|.+|
T Consensus 357 ~yvt--~Gq~V 365 (420)
T PRK14721 357 HYVT--NGQKV 365 (420)
T ss_pred EEEE--CCCCc
Confidence 6663 55555
No 408
>KOG2423|consensus
Probab=91.03 E-value=1.1 Score=40.11 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=53.1
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+|++|-|.|.-||-+-..- ++-..+++..+..-+|+|.||+||+.. -++..=+..+.+++- .--
T Consensus 214 SDVvvqVlDARDPmGTrc~--~ve~ylkke~phKHli~vLNKvDLVPt-------------wvt~~Wv~~lSkeyP-TiA 277 (572)
T KOG2423|consen 214 SDVVVQVLDARDPMGTRCK--HVEEYLKKEKPHKHLIYVLNKVDLVPT-------------WVTAKWVRHLSKEYP-TIA 277 (572)
T ss_pred cceeEEeeeccCCcccccH--HHHHHHhhcCCcceeEEEeeccccccH-------------HHHHHHHHHHhhhCc-cee
Confidence 4999999999998775432 455566666677889999999999974 133333444555544 223
Q ss_pred EEecccCCCCHHHHHHHHHHHhcC
Q psy8274 191 LECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
|..|-.+..|-- .+-.+++++-+
T Consensus 278 fHAsi~nsfGKg-alI~llRQf~k 300 (572)
T KOG2423|consen 278 FHASINNSFGKG-ALIQLLRQFAK 300 (572)
T ss_pred eehhhcCccchh-HHHHHHHHHHh
Confidence 444544444433 33344444443
No 409
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.85 E-value=2 Score=40.01 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=37.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
...++|.+.+. ++..+. ..+..+.. ..+.-+|.||.|.... .-.+..+...++ .++.
T Consensus 459 ~a~lLVLpAts--s~~Dl~-eii~~f~~---~~~~gvILTKlDEt~~----------------lG~aLsv~~~~~-LPI~ 515 (559)
T PRK12727 459 VTSLLVLPANA--HFSDLD-EVVRRFAH---AKPQGVVLTKLDETGR----------------FGSALSVVVDHQ-MPIT 515 (559)
T ss_pred CCcEEEEECCC--ChhHHH-HHHHHHHh---hCCeEEEEecCcCccc----------------hhHHHHHHHHhC-CCEE
Confidence 45567777653 344333 33333322 2456788999997542 345666677777 4666
Q ss_pred EecccCCCCH
Q psy8274 192 ECSALTQKGL 201 (228)
Q Consensus 192 evSa~~~~~v 201 (228)
.++ +|.+|
T Consensus 516 yvt--~GQ~V 523 (559)
T PRK12727 516 WVT--DGQRV 523 (559)
T ss_pred EEe--CCCCc
Confidence 663 45555
No 410
>KOG2484|consensus
Probab=90.47 E-value=0.94 Score=40.32 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=33.9
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.|+||-|.|+-||.+-.+- +.-..+.....+.-.|||.||+||+..
T Consensus 147 sDVVleVlDARDPlgtR~~--~vE~~V~~~~gnKkLILVLNK~DLVPr 192 (435)
T KOG2484|consen 147 SDVVLEVLDARDPLGTRCP--EVEEAVLQAHGNKKLILVLNKIDLVPR 192 (435)
T ss_pred hheEEEeeeccCCCCCCCh--hHHHHHHhccCCceEEEEeehhccCCH
Confidence 3999999999999885543 233344434345789999999999864
No 411
>KOG1534|consensus
Probab=89.90 E-value=0.95 Score=37.09 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=47.3
Q ss_pred CCCCEEEEEeCCCCCCchH--HHHHHhh-----------ccCc-----cccHHHHHHHHHHhCCceEEEecccCCCCHHH
Q psy8274 142 PSTPIILVGTKLDLRDDKE--TIEKLKE-----------KKLA-----PITYPQGLSMAKEIGAVKYLECSALTQKGLKT 203 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~--~~~~~~~-----------~~~~-----~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~ 203 (228)
-.+|.|=|.+|.||..... ..+.+.. ..++ .++.. ...+...+++..|++..+.+.+.|+.
T Consensus 163 lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~-i~~~v~d~~Mv~FlPl~~~~eeSi~~ 241 (273)
T KOG1534|consen 163 LEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKC-IAQLVDDYSMVNFLPLDSSDEESINI 241 (273)
T ss_pred hcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHH-HHHHhccccceeeeecCCCCHHHHHH
Confidence 4689999999999987532 1111110 0011 01111 12333446788899999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q psy8274 204 VFDEAIRAVLCPVPT 218 (228)
Q Consensus 204 lf~~l~~~i~~~~~~ 218 (228)
++..+-.++..-.-.
T Consensus 242 iL~~ID~aiQy~Ed~ 256 (273)
T KOG1534|consen 242 ILSYIDDAIQYGEDL 256 (273)
T ss_pred HHHHHHHHHHhcccc
Confidence 999888877654433
No 412
>KOG0092|consensus
Probab=88.57 E-value=0.28 Score=39.25 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=37.0
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVP 106 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 106 (228)
++.+|++ .++.++++||+++.||++.|.+..+.+....+.+.
T Consensus 133 a~~yAe~-~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 133 AQAYAES-QGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred HHHHHHh-cCCEEEEEecccccCHHHHHHHHHHhccCcccccc
Confidence 6777877 56899999999999999999999999988888765
No 413
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.42 E-value=3.8 Score=37.76 Aligned_cols=65 Identities=9% Similarity=-0.004 Sum_probs=36.5
Q ss_pred EEEEEecCC-hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEE
Q psy8274 114 FQICFSLVN-PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLE 192 (228)
Q Consensus 114 vi~v~Dvt~-~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 192 (228)
.++|.|.+. ...+.. .+..+....+--++.||.|.... .-.+..+...++ .++..
T Consensus 368 ~~LVLdAt~~~~~l~~-------i~~~f~~~~~~g~IlTKlDet~~----------------~G~~l~i~~~~~-lPI~y 423 (484)
T PRK06995 368 RLLLLNATSHGDTLNE-------VVQAYRGPGLAGCILTKLDEAAS----------------LGGALDVVIRYK-LPLHY 423 (484)
T ss_pred eEEEEeCCCcHHHHHH-------HHHHhccCCCCEEEEeCCCCccc----------------chHHHHHHHHHC-CCeEE
Confidence 677888763 322222 22333322233456799997643 334667777777 47766
Q ss_pred ecccCCCCH-HHH
Q psy8274 193 CSALTQKGL-KTV 204 (228)
Q Consensus 193 vSa~~~~~v-~~l 204 (228)
+ -+|.+| +++
T Consensus 424 v--t~GQ~VPeDL 434 (484)
T PRK06995 424 V--SNGQRVPEDL 434 (484)
T ss_pred E--ecCCCChhhh
Confidence 6 456666 443
No 414
>KOG0098|consensus
Probab=88.31 E-value=0.26 Score=39.40 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=32.7
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 100 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (228)
+..+|++ .++.|+++||+++.||++.|-+....++.
T Consensus 134 GeaFA~e-hgLifmETSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 134 GEAFARE-HGLIFMETSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred HHHHHHH-cCceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 7778888 78999999999999999999999988875
No 415
>KOG0463|consensus
Probab=88.11 E-value=2.1 Score=38.04 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.0
Q ss_pred ceEEEecccCCCCHHHHH
Q psy8274 188 VKYLECSALTQKGLKTVF 205 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf 205 (228)
+|+|.+|-.+|.|+..+-
T Consensus 333 CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 333 CPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred cceEEeccccCCChHHHH
Confidence 589999999999987543
No 416
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=88.02 E-value=1.7 Score=29.41 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=22.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
|+|||++...+...--... .+...++ .+.++|+++...
T Consensus 9 G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~ 46 (99)
T cd01983 9 GVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLG 46 (99)
T ss_pred CCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCcc
Confidence 7999999988775321101 1112223 577889887643
No 417
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.65 E-value=1.3 Score=44.84 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=30.5
Q ss_pred ceEEEEEecCChhhHHHH--------HHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENV--------RAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~--------~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+|||+..|+.+--+-+.. .+.-+.+++... -..||.|+.||.|+..-
T Consensus 216 NGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 216 NGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred ceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 999999998752222111 113344444443 26899999999999874
No 418
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=87.35 E-value=1.5 Score=37.12 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=30.5
Q ss_pred ceEEEEEecCC-----hh--hHHHHHH---hhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVN-----PA--SFENVRA---KWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~-----~~--s~~~~~~---~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+|||+++|+.+ .+ .+....+ .-+.++.... -..||.||.||+|+..-
T Consensus 27 nGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~G 84 (266)
T PF14331_consen 27 NGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPG 84 (266)
T ss_pred CEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccC
Confidence 99999999863 21 2222221 2333444433 36899999999999875
No 419
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=87.09 E-value=3.2 Score=35.16 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=35.2
Q ss_pred CCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 107 KKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 107 ~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
.-.++|.+|+|=-.| +.++.++. ..++.+.+. ++|..+|.||.++..
T Consensus 182 sl~~aD~ai~VTEPT-p~glhD~k-r~~el~~~f--~ip~~iViNr~~~g~ 228 (284)
T COG1149 182 SLKGADLAILVTEPT-PFGLHDLK-RALELVEHF--GIPTGIVINRYNLGD 228 (284)
T ss_pred hhccCCEEEEEecCC-ccchhHHH-HHHHHHHHh--CCceEEEEecCCCCc
Confidence 344459999997776 66777776 666666666 799999999996554
No 420
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=87.06 E-value=0.36 Score=38.20 Aligned_cols=36 Identities=44% Similarity=0.779 Sum_probs=32.5
Q ss_pred cchhHHhhcchhhhhcccccccc-chhHHHHHHHHhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVL 99 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~ 99 (228)
++.+|++++++.+.++||+++.| +.+.|...++..+
T Consensus 144 ~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 144 GANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred HHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 78889998888999999999999 9999999988654
No 421
>KOG3859|consensus
Probab=86.89 E-value=0.92 Score=38.69 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc---ceeEEE--cCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMV--DGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~---~~~~~~--~~~~~~~~i~D~~g~~~ 51 (228)
|.|||||+..+.+-.|.....+-..... ..++.+ -+...++.+.||.|..+
T Consensus 52 g~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGD 107 (406)
T KOG3859|consen 52 GLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGD 107 (406)
T ss_pred CccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccccc
Confidence 7899999999999888543222111111 111222 35678999999998654
No 422
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=86.66 E-value=0.62 Score=36.71 Aligned_cols=48 Identities=50% Similarity=0.761 Sum_probs=41.7
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRC 111 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 111 (228)
++.+++..+...+.++||+++.|+++.|...++..+..-|..|--++|
T Consensus 138 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~ 185 (187)
T cd04129 138 GKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVRKSEPGAGCC 185 (187)
T ss_pred HHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcccCcccccCcc
Confidence 445566667778999999999999999999999999999998888777
No 423
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.53 E-value=7.2 Score=34.91 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=37.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
.-+++|.|.+.. ...+. ..+.++..-.+-=++.||.|.... .-.+..++...+ .|+.
T Consensus 287 ~e~~LVlsat~~--~~~~~----~~~~~~~~~~~~~~I~TKlDet~~----------------~G~~l~~~~~~~-~Pi~ 343 (388)
T PRK12723 287 AEFHLAVSSTTK--TSDVK----EIFHQFSPFSYKTVIFTKLDETTC----------------VGNLISLIYEMR-KEVS 343 (388)
T ss_pred CeEEEEEcCCCC--HHHHH----HHHHHhcCCCCCEEEEEeccCCCc----------------chHHHHHHHHHC-CCEE
Confidence 357889998764 22222 233333221233466799997653 234556666667 4665
Q ss_pred EecccCCCCH-HHH
Q psy8274 192 ECSALTQKGL-KTV 204 (228)
Q Consensus 192 evSa~~~~~v-~~l 204 (228)
.+ -+|.+| +++
T Consensus 344 yi--t~Gq~vPeDl 355 (388)
T PRK12723 344 YV--TDGQIVPHNI 355 (388)
T ss_pred EE--eCCCCChhhh
Confidence 55 355666 443
No 424
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.21 E-value=0.91 Score=40.89 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=9.6
Q ss_pred CCChhhhHHhhh
Q psy8274 1 AVGKTCLLISYT 12 (228)
Q Consensus 1 gvGKTsli~~~~ 12 (228)
|+||||.+-.+.
T Consensus 110 GsGKTTt~~KLA 121 (451)
T COG0541 110 GSGKTTTAGKLA 121 (451)
T ss_pred CCChHhHHHHHH
Confidence 799999886655
No 425
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=85.72 E-value=0.4 Score=37.79 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=23.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+.++.|.|..+-.........+...+... . +++.||+|+...
T Consensus 115 ~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A----D-vIvlnK~D~~~~ 156 (178)
T PF02492_consen 115 DSIITVVDATNFDELENIPELLREQIAFA----D-VIVLNKIDLVSD 156 (178)
T ss_dssp SEEEEEEEGTTHGGHTTHCHHHHHHHCT-----S-EEEEE-GGGHHH
T ss_pred cceeEEeccccccccccchhhhhhcchhc----C-EEEEeccccCCh
Confidence 88999999865322222221222222222 2 667799999875
No 426
>KOG2484|consensus
Probab=85.04 E-value=0.66 Score=41.27 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCccc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 52 (228)
||||||+||++...... .-..|++.... ..+.+|. .+.+.|.||--..
T Consensus 262 NVGKSSvINsL~~~k~C~vg~~pGvT~sm-qeV~Ldk---~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 262 NVGKSSVINSLKRRKACNVGNVPGVTRSM-QEVKLDK---KIRLLDSPGIVPP 310 (435)
T ss_pred CCChhHHHHHHHHhccccCCCCccchhhh-hheeccC---CceeccCCceeec
Confidence 79999999999977652 22233332222 2333343 5788899986543
No 427
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=84.68 E-value=0.68 Score=38.04 Aligned_cols=42 Identities=36% Similarity=0.535 Sum_probs=36.4
Q ss_pred cchhHHhhcchhhhhcccccccc-chhHHHHHHHHhhCCCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVLCPVPTV 105 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~ 105 (228)
++.+|++++++.++++||+++.+ |++.|...++..+...+..
T Consensus 140 g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~~~ 182 (222)
T cd04173 140 GTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGHRQ 182 (222)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccCCc
Confidence 78899999999999999999985 9999999999987755533
No 428
>KOG0078|consensus
Probab=84.32 E-value=0.63 Score=37.70 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=34.0
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 100 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (228)
++.+|.+. ++.|.++||++|.|+++.|...++.++.
T Consensus 140 ge~lA~e~-G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 140 GEALAREY-GIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHh-CCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 89999998 7999999999999999999999999985
No 429
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=84.05 E-value=0.9 Score=35.99 Aligned_cols=40 Identities=68% Similarity=1.022 Sum_probs=34.1
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 103 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 103 (228)
++.++++.+...+.++||+++.|+++.|...++.++.+.+
T Consensus 142 ~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~~ 181 (191)
T cd01875 142 GGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP 181 (191)
T ss_pred HHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcccc
Confidence 4556666777789999999999999999999999988654
No 430
>KOG0744|consensus
Probab=83.95 E-value=7.8 Score=33.99 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=12.6
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|.|||||+..+.+.
T Consensus 187 GTGKTSLCKaLaQk 200 (423)
T KOG0744|consen 187 GTGKTSLCKALAQK 200 (423)
T ss_pred CCChhHHHHHHHHh
Confidence 78999999999875
No 431
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=83.92 E-value=0.97 Score=35.66 Aligned_cols=47 Identities=43% Similarity=0.746 Sum_probs=36.5
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRC 111 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 111 (228)
..+++..+.+.+.++||+++.|+++.|...++..+.+.+.......|
T Consensus 140 ~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~~~~~~~~~~ 186 (189)
T cd04134 140 LAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVRPPHPHSSAC 186 (189)
T ss_pred HHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcccccCcCCCcc
Confidence 34555556678899999999999999999999999877755444433
No 432
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=83.91 E-value=10 Score=34.02 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=11.8
Q ss_pred EEeeeeeeCCCCcccc
Q psy8274 38 PINLGLWDTAGQEDYD 53 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~ 53 (228)
.+.+.+.||.|...+.
T Consensus 281 ~~d~ILVDTaGrs~~D 296 (407)
T COG1419 281 DCDVILVDTAGRSQYD 296 (407)
T ss_pred cCCEEEEeCCCCCccC
Confidence 3577888999976654
No 433
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=83.29 E-value=0.62 Score=33.70 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
||||||+++.+...
T Consensus 9 gsGKST~a~~La~~ 22 (121)
T PF13207_consen 9 GSGKSTLAKELAER 22 (121)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999874
No 434
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=83.18 E-value=1.4 Score=34.46 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=26.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeC-CCC
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDT-AGQ 49 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~-~g~ 49 (228)
|+|||||+.+++..- .....+..+ .+...+.-+|..+.+.+.|. .|.
T Consensus 9 G~GKTTll~k~i~~l-~~~~~~v~G-f~t~evr~~g~r~GF~iv~l~~g~ 56 (168)
T PF03266_consen 9 GVGKTTLLKKVIEEL-KKKGLPVGG-FYTEEVRENGRRIGFDIVDLNSGE 56 (168)
T ss_dssp TSSHHHHHHHHHHHH-HHTCGGEEE-EEEEEEETTSSEEEEEEEET-TS-
T ss_pred CCCHHHHHHHHHHHh-hccCCccce-EEeecccCCCceEEEEEEECcCCC
Confidence 799999999988531 111111112 22233334677777888887 443
No 435
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=83.04 E-value=0.66 Score=30.17 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=11.4
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+..+..
T Consensus 33 GsGKSTllDAi~~ 45 (62)
T PF13555_consen 33 GSGKSTLLDAIQT 45 (62)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988874
No 436
>KOG2485|consensus
Probab=82.48 E-value=0.89 Score=39.22 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=26.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeee------ccceeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFD------NYSANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~------~~~~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
|||||||+|.+........-..+++. .....+.+-.. -.+.+.||||--.
T Consensus 153 NVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGil~ 208 (335)
T KOG2485|consen 153 NVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGILV 208 (335)
T ss_pred CCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCcCC
Confidence 79999999988755442221222221 22222222221 1256679999643
No 437
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=82.23 E-value=1.1 Score=35.80 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=33.7
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVP 106 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 106 (228)
++.+++.. .+.+.++||++|.||++.|...++.+++..+.++
T Consensus 133 ~~~~a~~~-~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~~~ 174 (189)
T cd04121 133 AQAYAERN-GMTFFEVSPLCNFNITESFTELARIVLMRHGRPP 174 (189)
T ss_pred HHHHHHHc-CCEEEEecCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 56666665 4689999999999999999999998886555444
No 438
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=82.16 E-value=0.72 Score=33.40 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|||||||++.|...
T Consensus 8 GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 8 GSGKTTIAKELAER 21 (129)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998864
No 439
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=82.14 E-value=0.88 Score=35.79 Aligned_cols=38 Identities=53% Similarity=0.879 Sum_probs=31.6
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 101 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 101 (228)
++.+++..+...+.++||+++.|+++.|...++..+.|
T Consensus 138 ~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 138 GEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhcC
Confidence 56777776666799999999999999999999876543
No 440
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=81.60 E-value=0.89 Score=35.72 Aligned_cols=36 Identities=44% Similarity=0.738 Sum_probs=31.5
Q ss_pred cchhHHhhcchhhhhcccccccc-chhHHHHHHHHhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVL 99 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~ 99 (228)
++.+|++.++..+.++||++|.+ +++.|...++..|
T Consensus 140 ~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 140 GCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 67888888888999999999995 9999999988644
No 441
>KOG0097|consensus
Probab=80.94 E-value=1.1 Score=34.22 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhC
Q psy8274 55 LRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 100 (228)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (228)
.+...|.. +..+|+ .+++.|+++|+++|.||+..|.+.++.++.
T Consensus 131 qrdv~yee-ak~fae-engl~fle~saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 131 QRDVTYEE-AKEFAE-ENGLMFLEASAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred cccCcHHH-HHHHHh-hcCeEEEEecccccCcHHHHHHHHHHHHHH
Confidence 33334443 344554 457999999999999999999999998863
No 442
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=80.71 E-value=0.88 Score=33.87 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=13.0
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++.+...-
T Consensus 25 GaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 25 GAGKTTFVRGLARAL 39 (123)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc
Confidence 899999999998653
No 443
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=80.68 E-value=13 Score=33.83 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=65.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC--------------------hhhHHHHHHhhHHHHhhhCCCCCEEE
Q psy8274 89 TVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN--------------------PASFENVRAKWYPEVRHHCPSTPIIL 148 (228)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~--------------------~~s~~~~~~~~~~~l~~~~~~~piil 148 (228)
|.|.+..-+.++..| |++++|--+-- ...|.++. +.++.++++ .+|++|
T Consensus 306 EKF~dIK~r~~gl~P--------davVlVATvRALK~hGG~~~~~l~~Env~avk~G~aNL~-~Hi~Nikkf--gvp~VV 374 (554)
T COG2759 306 EKFFDIKCRSSGLKP--------DAVVLVATVRALKMHGGVPKEDLTEENVDAVKKGFANLL-KHIENIKKF--GVPVVV 374 (554)
T ss_pred hhhcceeccccCCCC--------CeEEEeeehHHHHHcCCCChHHhcchhHHHHHHHHHHHH-HHHHHHHHc--CCCeEE
Confidence 455555666677778 99999976431 12344443 334444444 799999
Q ss_pred EEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEE--ecccCCCCHHHHHHHHHHHhcC
Q psy8274 149 VGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLE--CSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 149 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e--vSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.||.-...+. .......++.++| +++.- +=++-|+|-.++-+.++..+-+
T Consensus 375 AIN~F~tDt~~--------------Ei~~i~~~~~~~g-v~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 375 AINKFPTDTEA--------------EIAAIEKLCEEHG-VEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred EeccCCCCCHH--------------HHHHHHHHHHHcC-CceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 99998644432 2234567888888 45432 3467788889999998888775
No 444
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=78.94 E-value=1.1 Score=34.07 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||+..+++.
T Consensus 10 ~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 10 NSGKTTLIRKLINE 23 (140)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999864
No 445
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=78.74 E-value=1.1 Score=33.37 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+.++..
T Consensus 9 gsGKSt~a~~l~~ 21 (143)
T PF13671_consen 9 GSGKSTLAKRLAK 21 (143)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999984
No 446
>KOG0083|consensus
Probab=78.67 E-value=1.6 Score=33.07 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=30.2
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 99 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 99 (228)
+.++|+.+ .+.||++|+++|.||+-.|.+.++...
T Consensus 126 g~kla~~y-~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 126 GEKLAEAY-GIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred HHHHHHHH-CCCceeccccccccHhHHHHHHHHHHH
Confidence 67777665 599999999999999999999887765
No 447
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=78.43 E-value=1.2 Score=29.27 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+.+.+...
T Consensus 9 gsGKst~~~~l~~~ 22 (69)
T cd02019 9 GSGKSTVAKKLAEQ 22 (69)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998864
No 448
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=77.88 E-value=1.2 Score=35.54 Aligned_cols=33 Identities=58% Similarity=0.831 Sum_probs=28.6
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHH
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 97 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 97 (228)
++.+|+++++ .++++||++|.||++.|...++.
T Consensus 162 ~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 162 GRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 7788888775 89999999999999999887653
No 449
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=77.77 E-value=1.2 Score=32.46 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=12.8
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||++++++...
T Consensus 14 G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 14 GSGKTTLIKRLARQ 27 (131)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999975
No 450
>PF13173 AAA_14: AAA domain
Probab=77.22 E-value=1.2 Score=32.97 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=13.5
Q ss_pred CCChhhhHHhhhhCCC
Q psy8274 1 AVGKTCLLISYTTNAF 16 (228)
Q Consensus 1 gvGKTsli~~~~~~~~ 16 (228)
+||||||+.++.....
T Consensus 12 ~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 12 GVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 6999999999987543
No 451
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=76.87 E-value=5.3 Score=37.22 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=64.1
Q ss_pred cchhHHhhcchhhhhccccccccch-hHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC----------------C----
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLK-TVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV----------------N---- 122 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt----------------~---- 122 (228)
+.++|-+..- +..|-+..|-+++ |.|.+..-+..+..| |++++|--+- |
T Consensus 284 At~~al~l~d--yvvTEAGFGaDlGaEKF~dIkcr~~gl~P--------~~~VlVaTvRALK~HGG~~~~~l~~eNl~al 353 (557)
T PF01268_consen 284 ATKMALKLAD--YVVTEAGFGADLGAEKFFDIKCRKSGLKP--------DAVVLVATVRALKMHGGVAKDDLNEENLEAL 353 (557)
T ss_dssp HHHHHHHHSS--EEEEEBSSSTTTHHHHHHHTHHHHHT-----------SEEEEEEEHHHHHHHTT--GGGTTS--HHHH
T ss_pred HHHHHHhhcc--eeecccccccccChhhhcCccchhcccCc--------ceEEEeeechHHHhhcCCCccccCccCHHHH
Confidence 3444444433 3333344444432 445555555566677 9999997542 1
Q ss_pred hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEec--ccCCCC
Q psy8274 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECS--ALTQKG 200 (228)
Q Consensus 123 ~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evS--a~~~~~ 200 (228)
...|.++. +.++.++++ .+|++|+.|+..-..+.+ .+...++|+++| .++..+. ++-|+|
T Consensus 354 ~~G~~NL~-rHIeNik~f--GvpvVVAIN~F~tDT~aE--------------i~~I~~~~~~~G-v~~avs~~wa~GGeG 415 (557)
T PF01268_consen 354 EKGFANLE-RHIENIKKF--GVPVVVAINRFPTDTDAE--------------IELIRELCEELG-VRAAVSEHWAKGGEG 415 (557)
T ss_dssp HHHHHHHH-HHHHHHHCT--T--EEEEEE--TTS-HHH--------------HHHHHHHCCCCC-EEEEEC-HHHHGGGG
T ss_pred HHHHHHHH-HHHHHHHhc--CCCeEEEecCCCCCCHHH--------------HHHHHHHHHhCC-CCEEEechhhccccc
Confidence 12244444 444445544 899999999987665422 234567777788 4533332 356788
Q ss_pred HHHHHHHHHHHh
Q psy8274 201 LKTVFDEAIRAV 212 (228)
Q Consensus 201 v~~lf~~l~~~i 212 (228)
-.++-+.+++.+
T Consensus 416 a~eLA~~Vv~a~ 427 (557)
T PF01268_consen 416 AVELAEAVVEAC 427 (557)
T ss_dssp CHHHHHHHHHH-
T ss_pred HHHHHHHHHHHh
Confidence 899999998887
No 452
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=76.61 E-value=1.3 Score=32.70 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+.
T Consensus 21 GsGKStLl~~l~g~ 34 (137)
T PF00005_consen 21 GSGKSTLLKALAGL 34 (137)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCccccceeeeccc
Confidence 79999999987763
No 453
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=76.58 E-value=12 Score=34.03 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=22.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE-EEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI-ILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~nK~Dl~~ 157 (228)
|.+++|.|.+... +. .+.....+...++ -+|.||.|...
T Consensus 207 devlLVvda~~gq---~a----v~~a~~F~~~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 207 DEVLLVIDATIGQ---QA----KNQAKAFHEAVGIGGIIITKLDGTA 246 (437)
T ss_pred cceeEEEeccccH---HH----HHHHHHHHhcCCCCEEEEecccCCC
Confidence 8899999987642 11 1222333223333 46679999765
No 454
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=75.93 E-value=1.4 Score=34.06 Aligned_cols=13 Identities=38% Similarity=0.445 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++++..
T Consensus 34 G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 34 GSGKTSLLRALLD 46 (185)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 455
>PRK08233 hypothetical protein; Provisional
Probab=75.84 E-value=1.4 Score=34.23 Aligned_cols=14 Identities=36% Similarity=0.283 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||+.++...
T Consensus 13 GsGKtTla~~L~~~ 26 (182)
T PRK08233 13 GGGKTTLTERLTHK 26 (182)
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999863
No 456
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=75.40 E-value=2.3 Score=37.23 Aligned_cols=29 Identities=24% Similarity=0.084 Sum_probs=18.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS 29 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~ 29 (228)
|+|||||++.++..--.....-++++...
T Consensus 170 gSGKTTll~aL~~~ip~~~ri~tiEd~~E 198 (332)
T PRK13900 170 STGKTTFTNAALREIPAIERLITVEDARE 198 (332)
T ss_pred CCCHHHHHHHHHhhCCCCCeEEEecCCCc
Confidence 79999999998864433333444455443
No 457
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=75.37 E-value=1.4 Score=33.20 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=12.7
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 32 GaGKTtl~~~l~~~ 45 (133)
T TIGR00150 32 GAGKTTLVQGLLQG 45 (133)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999875
No 458
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=75.22 E-value=1.7 Score=34.73 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=23.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc--eeEEEcCeEEeee
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPINLG 42 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~ 42 (228)
|||||||++.+.... .....+..+.+ ..-+++|..+.+.
T Consensus 14 G~GKsTl~k~L~~~~---~l~~SVS~TTR~pR~gEv~G~dY~Fv 54 (191)
T COG0194 14 GVGKSTLVKALLEDD---KLRFSVSATTRKPRPGEVDGVDYFFV 54 (191)
T ss_pred CCCHHHHHHHHHhhc---CeEEEEEeccCCCCCCCcCCceeEeC
Confidence 899999999998754 23333322222 2235567666554
No 459
>KOG0084|consensus
Probab=74.73 E-value=2 Score=34.64 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=33.0
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 100 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (228)
++.+|.+.....++++||+.+.||++.|...+..+..
T Consensus 137 a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 137 AQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred HHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHH
Confidence 7889999988889999999999999999998877654
No 460
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=74.08 E-value=1.6 Score=38.25 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=12.8
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||+++++..
T Consensus 14 GaGKTTll~~ll~~ 27 (341)
T TIGR02475 14 GAGKTTLIRHLLQN 27 (341)
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999999975
No 461
>PRK10646 ADP-binding protein; Provisional
Probab=74.04 E-value=1.6 Score=33.85 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=12.7
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 38 GaGKTtf~rgl~~~ 51 (153)
T PRK10646 38 GAGKTTFSRGFLQA 51 (153)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999865
No 462
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=73.77 E-value=1.7 Score=33.92 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+.+++.
T Consensus 12 ~SGKTTLie~lv~ 24 (161)
T COG1763 12 NSGKTTLIEKLVR 24 (161)
T ss_pred CCChhhHHHHHHH
Confidence 7999999999975
No 463
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=73.50 E-value=1.7 Score=34.51 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 9 GsGKSTl~~~l~~~ 22 (198)
T cd02023 9 GSGKTTVAEEIIEQ 22 (198)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998764
No 464
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=73.27 E-value=2.5 Score=34.95 Aligned_cols=37 Identities=41% Similarity=0.690 Sum_probs=32.3
Q ss_pred cchhHHhhcchhhhhccccccc-cchhHHHHHHHHhhC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQK-GLKTVFDEAIRAVLC 100 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~ 100 (228)
++.+|+++++..++++||++|. +|++.|...++..+.
T Consensus 152 ~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 152 GCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred HHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 7889988887789999999998 799999998877654
No 465
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=73.05 E-value=13 Score=31.10 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
.||.+|.|.|.+ .+|+.-+. +.- .|.+.-.-.++.+|.||.|-.
T Consensus 155 ~vD~vivVvDpS-~~sl~tae-ri~-~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 155 GVDLVIVVVDPS-YKSLRTAE-RIK-ELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CCCEEEEEeCCc-HHHHHHHH-HHH-HHHHHhCCceEEEEEeeccch
Confidence 359999999985 45665553 332 333332237899999999965
No 466
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=72.90 E-value=1.8 Score=35.39 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+..
T Consensus 9 GSGKTTla~~L~~ 21 (220)
T cd02025 9 AVGKSTTARVLQA 21 (220)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 467
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=72.88 E-value=1.9 Score=30.88 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=13.7
Q ss_pred CCChhhhHHhhhhCCC
Q psy8274 1 AVGKTCLLISYTTNAF 16 (228)
Q Consensus 1 gvGKTsli~~~~~~~~ 16 (228)
|+|||+++..+...-.
T Consensus 12 G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 12 GSGKTTLARALARELG 27 (148)
T ss_pred CCcHHHHHHHHHhccC
Confidence 8999999999987654
No 468
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=72.36 E-value=2 Score=32.87 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=26.9
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHH
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 96 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 96 (228)
+..++++...+.++++||+++.|+++.|...++
T Consensus 124 ~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 124 ARQLCADMKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred HHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 345666666789999999999999999988764
No 469
>PRK14737 gmk guanylate kinase; Provisional
Probab=71.98 E-value=3 Score=33.16 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=12.7
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|||||||+++++..
T Consensus 14 G~GK~tl~~~l~~~ 27 (186)
T PRK14737 14 GGGKSTIIQALLEE 27 (186)
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999999864
No 470
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=71.96 E-value=7.8 Score=28.20 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=27.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKL 153 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~ 153 (228)
.++++-|| ....+... .++..++..+.++|+++++++.
T Consensus 40 ~avvi~~d---~~~~~~~~-~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 40 AAVVISWD---GEEEDEAQ-ELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp EEEEEECH---HHHHHHHH-HHHHHHHHHSTT-EEEEEESCC
T ss_pred eEEEEEcc---cccchhHH-HHHHHHHHhCCCCCEEEEecCC
Confidence 66666666 55555555 8889999999999999998754
No 471
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=71.76 E-value=1.9 Score=34.06 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||+.++...
T Consensus 16 gsGKTTLi~~li~~ 29 (173)
T PRK10751 16 GTGKTTLLKKLIPA 29 (173)
T ss_pred CChHHHHHHHHHHH
Confidence 79999999999853
No 472
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=71.76 E-value=34 Score=31.09 Aligned_cols=66 Identities=14% Similarity=0.028 Sum_probs=36.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE-EEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI-ILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+.+++|.|.+... .+. .+...+... .++ =+|.||.|.... .-.+..++...+ .|+
T Consensus 214 ~e~lLVvda~tgq---~~~-~~a~~f~~~---v~i~giIlTKlD~~~~----------------~G~~lsi~~~~~-~PI 269 (428)
T TIGR00959 214 DEILLVVDAMTGQ---DAV-NTAKTFNER---LGLTGVVLTKLDGDAR----------------GGAALSVRSVTG-KPI 269 (428)
T ss_pred ceEEEEEeccchH---HHH-HHHHHHHhh---CCCCEEEEeCccCccc----------------ccHHHHHHHHHC-cCE
Confidence 8899999987532 222 233333322 222 466899996543 122566666677 466
Q ss_pred EEecccCCCCHHH
Q psy8274 191 LECSALTQKGLKT 203 (228)
Q Consensus 191 ~evSa~~~~~v~~ 203 (228)
..++. |+.+++
T Consensus 270 ~fi~~--Ge~i~d 280 (428)
T TIGR00959 270 KFIGV--GEKIDD 280 (428)
T ss_pred EEEeC--CCChhh
Confidence 66643 444444
No 473
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=71.62 E-value=1.7 Score=33.46 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.|...
T Consensus 9 stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 9 STGKTTLIEALAAR 22 (163)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc
Confidence 68999999999864
No 474
>PF05729 NACHT: NACHT domain
Probab=71.43 E-value=2.1 Score=32.28 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+++.+++..
T Consensus 10 G~GKStll~~~~~~ 23 (166)
T PF05729_consen 10 GSGKSTLLRKLAQQ 23 (166)
T ss_pred CCChHHHHHHHHHH
Confidence 89999999998854
No 475
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=71.24 E-value=9.1 Score=35.28 Aligned_cols=29 Identities=28% Similarity=0.178 Sum_probs=20.8
Q ss_pred CCChhhhHHhhhhCCCCCCC-Cceeeeccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEY-IPTVFDNYS 29 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~-~~t~~~~~~ 29 (228)
|+||||.++.++..-..+.. .-|++|...
T Consensus 268 GSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 268 GSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred CCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 89999999999976654333 556666544
No 476
>KOG2485|consensus
Probab=71.21 E-value=11 Score=32.67 Aligned_cols=41 Identities=29% Similarity=0.304 Sum_probs=28.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|.||-|=|+-=|-|=.+ ..+....+.+|-|+|.||+||.+.
T Consensus 48 D~iiEvrDaRiPLssrn------~~~~~~~~~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 48 DCIIEVRDARIPLSSRN------ELFQDFLPPKPRIIVLNKMDLADP 88 (335)
T ss_pred cEEEEeeccccCCcccc------HHHHHhcCCCceEEEEecccccCc
Confidence 99999999765444222 122223336888999999999985
No 477
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=71.16 E-value=2.1 Score=34.93 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||.+++...
T Consensus 14 G~GKSTLa~~La~~ 27 (216)
T COG1428 14 GAGKSTLAQALAEH 27 (216)
T ss_pred ccCHHHHHHHHHHH
Confidence 89999999999853
No 478
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=71.01 E-value=2.2 Score=34.13 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=13.2
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||+|++.+....
T Consensus 30 g~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 30 GSGKTSLLKEFINEL 44 (234)
T ss_dssp TSSHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHh
Confidence 799999999998754
No 479
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=70.92 E-value=2.7 Score=36.97 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.++..
T Consensus 172 GSGKTTll~aLl~~ 185 (344)
T PRK13851 172 GSGKTTMSKTLISA 185 (344)
T ss_pred CccHHHHHHHHHcc
Confidence 89999999999864
No 480
>PRK07261 topology modulation protein; Provisional
Probab=70.70 E-value=2.2 Score=33.32 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+..+..
T Consensus 10 GsGKSTla~~l~~ 22 (171)
T PRK07261 10 GSGKSTLARKLSQ 22 (171)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999864
No 481
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=70.65 E-value=2.4 Score=30.74 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=12.6
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||++++.+...
T Consensus 8 G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 8 GTGKTTLARALAQY 21 (132)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCeeHHHHHHHhh
Confidence 89999999999874
No 482
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=70.59 E-value=12 Score=36.34 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=29.2
Q ss_pred CCChhhhHHhhhhCCCCCC-----CCceeeeccceeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGE-----YIPTVFDNYSANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
++|||||+|.+.+-.|..- ...|.|.-...........-.+.++|+-|...
T Consensus 5 ssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~ 60 (742)
T PF05879_consen 5 SSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDG 60 (742)
T ss_pred CCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCc
Confidence 5899999999999988532 12233433322222211223456678877554
No 483
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=70.52 E-value=3.6 Score=34.12 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=16.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV 24 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~ 24 (228)
|+|||||.+.+++.+ .|..|-
T Consensus 40 GsGKSTLa~~i~G~p---~Y~Vt~ 60 (251)
T COG0396 40 GSGKSTLAYTIMGHP---KYEVTE 60 (251)
T ss_pred CCCHHHHHHHHhCCC---CceEec
Confidence 799999999999864 455554
No 484
>PRK14738 gmk guanylate kinase; Provisional
Probab=70.42 E-value=3.2 Score=33.43 Aligned_cols=25 Identities=8% Similarity=0.181 Sum_probs=17.0
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.++.+++. ..+++++.++...+...
T Consensus 171 ~~~iId~~--~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 171 DYVVVNPE--DRLDEAVAQIMAIISAE 195 (206)
T ss_pred CEEEECCC--CCHHHHHHHHHHHHHHH
Confidence 45656553 36888888888877543
No 485
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=70.14 E-value=2.3 Score=34.21 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 16 GsGKSTl~~~l~~ 28 (207)
T TIGR00235 16 GSGKTTVARKIYE 28 (207)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999875
No 486
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=69.60 E-value=2.5 Score=33.63 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=11.5
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||.+++..
T Consensus 9 gSGKTTla~~L~~ 21 (194)
T PF00485_consen 9 GSGKTTLAKRLAQ 21 (194)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999874
No 487
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=69.47 E-value=2.5 Score=32.62 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+.++..
T Consensus 9 gsGKTtl~~~l~~ 21 (155)
T TIGR00176 9 NSGKTTLIERLVK 21 (155)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999986
No 488
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=69.35 E-value=2.4 Score=33.45 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 12 GsGKsTl~~~l~~~ 25 (186)
T PRK10078 12 GSGKDSLLAALRQR 25 (186)
T ss_pred CCCHHHHHHHHhcc
Confidence 89999999999653
No 489
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=69.31 E-value=2.5 Score=32.93 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 11 GsGKttl~~~l~~~ 24 (179)
T TIGR02322 11 GAGKDTLLDYARAR 24 (179)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998764
No 490
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=69.15 E-value=3.3 Score=36.28 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=13.0
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||+|.+..-.
T Consensus 183 GSGKTTlLNal~~~i 197 (355)
T COG4962 183 GSGKTTLLNALSGFI 197 (355)
T ss_pred CCCHHHHHHHHHhcC
Confidence 799999999998744
No 491
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=69.11 E-value=2.5 Score=34.43 Aligned_cols=13 Identities=31% Similarity=0.225 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
||||||+++.+..
T Consensus 9 GsGKSTl~~~L~~ 21 (219)
T cd02030 9 ASGKGKLAKELAE 21 (219)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 492
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=68.76 E-value=2.4 Score=32.61 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.9
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++-+..+-
T Consensus 35 GAGKTtf~rgi~~~L 49 (149)
T COG0802 35 GAGKTTLVRGIAKGL 49 (149)
T ss_pred cCChHHHHHHHHHHc
Confidence 799999999998653
No 493
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=68.71 E-value=2.6 Score=32.71 Aligned_cols=13 Identities=38% Similarity=0.417 Sum_probs=12.0
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+.++..
T Consensus 11 gsGKTTli~~L~~ 23 (159)
T cd03116 11 GSGKTTLLEKLIP 23 (159)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999985
No 494
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=68.55 E-value=2.6 Score=33.26 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 9 GsGKSTl~~~L~~ 21 (193)
T cd01673 9 GAGKSTLAKELAE 21 (193)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 495
>PRK08118 topology modulation protein; Reviewed
Probab=68.13 E-value=2.7 Score=32.74 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||.+.+...
T Consensus 11 GsGKSTlak~L~~~ 24 (167)
T PRK08118 11 GSGKSTLARQLGEK 24 (167)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998854
No 496
>PRK01889 GTPase RsgA; Reviewed
Probab=68.06 E-value=3.9 Score=36.07 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=12.6
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+.
T Consensus 205 gvGKStLin~L~g~ 218 (356)
T PRK01889 205 GVGKSTLVNALLGE 218 (356)
T ss_pred CccHHHHHHHHHHh
Confidence 79999999999864
No 497
>PRK05480 uridine/cytidine kinase; Provisional
Probab=67.95 E-value=2.7 Score=33.71 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 16 GsGKTTl~~~l~~~ 29 (209)
T PRK05480 16 GSGKTTVASTIYEE 29 (209)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998864
No 498
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=67.88 E-value=2.8 Score=30.34 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.0
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||+|++.+...-
T Consensus 29 G~GKT~l~~~i~~~~ 43 (151)
T cd00009 29 GTGKTTLARAIANEL 43 (151)
T ss_pred CCCHHHHHHHHHHHh
Confidence 899999999998754
No 499
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=67.84 E-value=2.9 Score=29.91 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.|...
T Consensus 8 G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 8 GIGKSTLAKELAKD 21 (107)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998754
No 500
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=67.81 E-value=2.7 Score=32.72 Aligned_cols=13 Identities=15% Similarity=0.033 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++++..
T Consensus 13 GsGKsTl~~~l~~ 25 (188)
T TIGR01360 13 GSGKGTQCEKIVE 25 (188)
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999984
Done!