Query psy8274
Match_columns 228
No_of_seqs 114 out of 1134
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 23:18:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.1E-34 3.7E-39 236.7 13.8 152 1-214 23-176 (216)
2 3q3j_B RHO-related GTP-binding 100.0 4.6E-31 1.6E-35 214.1 16.9 172 1-220 37-209 (214)
3 2atx_A Small GTP binding prote 100.0 1.8E-30 6.2E-35 206.3 19.6 166 1-214 28-193 (194)
4 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.3E-30 7.7E-35 203.5 18.8 169 1-217 15-183 (186)
5 3reg_A RHO-like small GTPase; 100.0 2.6E-30 8.9E-35 205.6 18.0 160 1-218 33-192 (194)
6 1m7b_A RND3/RHOE small GTP-bin 100.0 2E-30 6.9E-35 204.8 16.8 166 1-214 17-183 (184)
7 2j0v_A RAC-like GTP-binding pr 100.0 1.2E-30 4.1E-35 210.3 15.4 165 1-217 19-183 (212)
8 3oes_A GTPase rhebl1; small GT 100.0 9.6E-31 3.3E-35 209.5 14.5 166 1-228 34-201 (201)
9 2q3h_A RAS homolog gene family 100.0 3.5E-30 1.2E-34 205.7 16.9 167 1-215 30-196 (201)
10 4gzl_A RAS-related C3 botulinu 100.0 5.5E-30 1.9E-34 206.0 16.9 165 1-213 40-204 (204)
11 2j1l_A RHO-related GTP-binding 100.0 6.1E-30 2.1E-34 207.2 17.1 168 1-216 44-211 (214)
12 2gco_A H9, RHO-related GTP-bin 100.0 3E-29 1E-33 201.0 19.8 166 1-214 35-200 (201)
13 1gwn_A RHO-related GTP-binding 100.0 6.3E-30 2.2E-34 206.3 15.9 166 1-214 38-204 (205)
14 2fv8_A H6, RHO-related GTP-bin 100.0 5.4E-29 1.8E-33 200.4 19.9 169 1-217 35-203 (207)
15 3bwd_D RAC-like GTP-binding pr 100.0 8.7E-30 3E-34 199.7 14.6 165 1-215 18-182 (182)
16 3t5g_A GTP-binding protein RHE 100.0 3.9E-29 1.3E-33 196.2 17.5 157 1-219 16-174 (181)
17 2bov_A RAla, RAS-related prote 100.0 1.4E-29 4.6E-34 202.5 14.4 152 1-214 24-177 (206)
18 4dsu_A GTPase KRAS, isoform 2B 100.0 3.6E-29 1.2E-33 197.1 16.4 151 1-214 14-166 (189)
19 3c5c_A RAS-like protein 12; GD 100.0 3.3E-29 1.1E-33 198.7 14.7 151 1-214 31-186 (187)
20 3ihw_A Centg3; RAS, centaurin, 100.0 4.7E-29 1.6E-33 197.6 14.9 151 1-216 30-182 (184)
21 1c1y_A RAS-related protein RAP 100.0 1.2E-28 4.2E-33 190.1 14.8 152 1-213 13-166 (167)
22 3kkq_A RAS-related protein M-R 100.0 2E-28 6.8E-33 192.4 15.6 152 1-214 28-182 (183)
23 2hup_A RAS-related protein RAB 100.0 7.7E-29 2.6E-33 198.9 13.2 155 1-216 39-195 (201)
24 2iwr_A Centaurin gamma 1; ANK 100.0 1.6E-28 5.4E-33 192.2 14.3 150 1-215 17-170 (178)
25 2gf0_A GTP-binding protein DI- 100.0 6.8E-29 2.3E-33 197.4 12.2 152 1-215 18-172 (199)
26 2fu5_C RAS-related protein RAB 100.0 4.7E-29 1.6E-33 196.0 11.1 153 1-215 18-172 (183)
27 2fn4_A P23, RAS-related protei 100.0 2.3E-28 7.9E-33 190.9 14.8 156 1-218 19-176 (181)
28 1u8z_A RAS-related protein RAL 100.0 1.7E-28 5.9E-33 189.0 13.9 152 1-214 14-167 (168)
29 1z08_A RAS-related protein RAB 100.0 3.8E-28 1.3E-32 188.0 15.7 152 1-214 16-169 (170)
30 3tw8_B RAS-related protein RAB 100.0 9.3E-28 3.2E-32 187.5 17.2 154 1-216 19-173 (181)
31 3q85_A GTP-binding protein REM 100.0 3.5E-28 1.2E-32 188.3 14.7 153 1-215 12-168 (169)
32 3q72_A GTP-binding protein RAD 100.0 5.8E-28 2E-32 186.5 14.9 151 1-214 12-164 (166)
33 2g6b_A RAS-related protein RAB 100.0 1.6E-27 5.5E-32 186.3 17.5 155 1-217 20-177 (180)
34 3cbq_A GTP-binding protein REM 100.0 2.9E-28 9.9E-33 194.8 13.2 155 1-217 33-191 (195)
35 1z2a_A RAS-related protein RAB 100.0 7.3E-28 2.5E-32 185.9 14.8 152 1-214 15-167 (168)
36 2ew1_A RAS-related protein RAB 100.0 7.6E-28 2.6E-32 193.6 15.4 153 1-215 36-190 (201)
37 2g3y_A GTP-binding protein GEM 100.0 4.7E-28 1.6E-32 196.7 14.0 154 1-216 47-205 (211)
38 2wkq_A NPH1-1, RAS-related C3 100.0 1.8E-27 6E-32 203.7 18.3 167 1-215 165-331 (332)
39 2nzj_A GTP-binding protein REM 100.0 4.6E-28 1.6E-32 188.5 13.2 153 1-215 14-170 (175)
40 2efe_B Small GTP-binding prote 100.0 1.8E-27 6.3E-32 186.2 16.6 154 1-216 22-177 (181)
41 2a5j_A RAS-related protein RAB 100.0 1.6E-27 5.4E-32 189.1 16.2 153 1-215 31-185 (191)
42 3tkl_A RAS-related protein RAB 100.0 1.1E-27 3.9E-32 189.9 15.4 155 1-217 26-182 (196)
43 3cpj_B GTP-binding protein YPT 100.0 2.1E-27 7.1E-32 193.3 17.2 155 1-217 23-179 (223)
44 2hxs_A RAB-26, RAS-related pro 100.0 4.5E-28 1.5E-32 189.2 12.6 154 1-216 16-175 (178)
45 1r2q_A RAS-related protein RAB 100.0 1.7E-27 5.7E-32 184.0 15.6 151 1-213 16-168 (170)
46 1z0f_A RAB14, member RAS oncog 100.0 1.3E-27 4.4E-32 186.3 15.0 152 1-214 25-178 (179)
47 2a9k_A RAS-related protein RAL 100.0 8.5E-28 2.9E-32 188.6 13.9 152 1-214 28-181 (187)
48 2gf9_A RAS-related protein RAB 100.0 3.7E-27 1.3E-31 186.6 17.7 152 1-214 32-185 (189)
49 2bcg_Y Protein YP2, GTP-bindin 100.0 4.4E-27 1.5E-31 188.5 18.3 151 1-213 18-170 (206)
50 1kao_A RAP2A; GTP-binding prot 100.0 8.3E-28 2.8E-32 185.0 13.0 151 1-213 13-165 (167)
51 1z0j_A RAB-22, RAS-related pro 100.0 4.6E-27 1.6E-31 181.7 16.9 151 1-213 16-168 (170)
52 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.2E-27 1.1E-31 184.2 16.0 153 1-215 17-175 (177)
53 2atv_A RERG, RAS-like estrogen 100.0 6.1E-28 2.1E-32 192.3 12.1 152 1-215 38-192 (196)
54 1g16_A RAS-related protein SEC 100.0 2.1E-27 7.3E-32 183.6 14.5 152 1-215 13-166 (170)
55 2bme_A RAB4A, RAS-related prot 99.9 2.8E-27 9.7E-32 186.1 15.3 153 1-215 20-174 (186)
56 1ek0_A Protein (GTP-binding pr 99.9 2.5E-27 8.5E-32 183.0 14.6 154 1-213 13-168 (170)
57 3con_A GTPase NRAS; structural 99.9 4.8E-27 1.6E-31 185.7 16.5 152 1-215 31-184 (190)
58 2erx_A GTP-binding protein DI- 99.9 1.1E-27 3.7E-32 185.4 12.5 152 1-214 13-167 (172)
59 1ky3_A GTP-binding protein YPT 99.9 2.2E-27 7.6E-32 185.5 13.8 155 1-215 18-179 (182)
60 2ce2_X GTPase HRAS; signaling 99.9 4.8E-27 1.6E-31 180.3 15.5 151 1-214 13-165 (166)
61 2fg5_A RAB-22B, RAS-related pr 99.9 3.5E-27 1.2E-31 187.4 14.6 153 1-215 33-187 (192)
62 1zbd_A Rabphilin-3A; G protein 99.9 5.9E-27 2E-31 187.2 15.9 152 1-214 18-171 (203)
63 2y8e_A RAB-protein 6, GH09086P 99.9 4.2E-27 1.4E-31 183.4 14.4 152 1-214 24-177 (179)
64 1x3s_A RAS-related protein RAB 99.9 8E-27 2.7E-31 184.6 16.2 153 1-216 25-180 (195)
65 3bc1_A RAS-related protein RAB 99.9 1.9E-27 6.6E-32 187.6 12.1 153 1-215 21-186 (195)
66 3dz8_A RAS-related protein RAB 99.9 4E-28 1.4E-32 192.6 8.1 154 1-216 33-188 (191)
67 2p5s_A RAS and EF-hand domain 99.9 2.9E-27 1E-31 188.9 13.2 158 1-214 38-197 (199)
68 3th5_A RAS-related C3 botulinu 99.9 1.6E-29 5.4E-34 202.8 0.0 165 1-213 40-204 (204)
69 2o52_A RAS-related protein RAB 99.9 3.9E-27 1.3E-31 188.6 13.7 153 1-215 35-189 (200)
70 1z06_A RAS-related protein RAB 99.9 4.8E-27 1.6E-31 185.9 14.1 151 1-213 30-187 (189)
71 2il1_A RAB12; G-protein, GDP, 99.9 1.5E-27 5.1E-32 189.7 11.2 153 1-214 36-190 (192)
72 2yc2_C IFT27, small RAB-relate 99.9 1.7E-27 5.8E-32 190.3 11.2 152 1-214 30-192 (208)
73 2oil_A CATX-8, RAS-related pro 99.9 1.3E-26 4.6E-31 183.8 15.7 152 1-214 35-188 (193)
74 2cjw_A GTP-binding protein GEM 99.9 1.5E-26 5.1E-31 184.4 16.0 153 1-215 16-173 (192)
75 3t1o_A Gliding protein MGLA; G 99.9 1.5E-27 5.3E-32 188.8 9.4 152 1-216 24-194 (198)
76 1vg8_A RAS-related protein RAB 99.9 2.7E-26 9.3E-31 183.6 16.3 152 1-214 18-175 (207)
77 3clv_A RAB5 protein, putative; 99.9 4.4E-26 1.5E-30 180.8 15.8 150 1-214 17-204 (208)
78 3cph_A RAS-related protein SEC 99.9 5.1E-26 1.7E-30 182.8 15.9 151 1-214 30-182 (213)
79 2f7s_A C25KG, RAS-related prot 99.9 9.7E-27 3.3E-31 188.0 11.4 152 1-214 35-199 (217)
80 3l0i_B RAS-related protein RAB 99.9 1.4E-27 4.7E-32 190.9 4.9 152 1-214 43-196 (199)
81 4bas_A ADP-ribosylation factor 99.9 1.3E-26 4.5E-31 184.1 10.6 156 1-218 27-193 (199)
82 3gj0_A GTP-binding nuclear pro 99.9 9.8E-27 3.4E-31 188.8 9.5 153 1-217 25-178 (221)
83 4djt_A GTP-binding nuclear pro 99.9 3.7E-26 1.3E-30 184.7 11.4 155 1-217 21-178 (218)
84 1f6b_A SAR1; gtpases, N-termin 99.9 1.3E-25 4.5E-30 179.7 13.9 145 1-212 35-197 (198)
85 1zj6_A ADP-ribosylation factor 99.9 2.1E-25 7.3E-30 176.1 13.2 152 1-220 26-184 (187)
86 1m2o_B GTP-binding protein SAR 99.9 6.1E-25 2.1E-29 174.6 15.2 143 1-211 33-189 (190)
87 2h57_A ADP-ribosylation factor 99.9 7E-25 2.4E-29 173.5 14.3 147 1-214 31-187 (190)
88 1zd9_A ADP-ribosylation factor 99.9 2.7E-25 9.3E-30 175.9 11.1 153 1-215 32-186 (188)
89 1r8s_A ADP-ribosylation factor 99.9 1.1E-25 3.7E-30 173.3 8.2 151 1-214 10-162 (164)
90 3llu_A RAS-related GTP-binding 99.9 6.9E-25 2.3E-29 174.8 12.3 154 1-213 30-196 (196)
91 1upt_A ARL1, ADP-ribosylation 99.9 5.9E-25 2E-29 170.1 11.2 152 1-215 17-170 (171)
92 1ksh_A ARF-like protein 2; sma 99.9 2.3E-24 8E-29 169.6 14.5 147 1-215 28-181 (186)
93 2h17_A ADP-ribosylation factor 99.9 1E-24 3.4E-29 171.5 12.3 143 1-211 31-180 (181)
94 2zej_A Dardarin, leucine-rich 99.9 1.2E-25 3.9E-30 177.6 6.0 159 1-217 12-181 (184)
95 1fzq_A ADP-ribosylation factor 99.9 1.1E-24 3.7E-29 171.8 9.7 147 1-215 26-179 (181)
96 3c5h_A Glucocorticoid receptor 99.9 1.4E-24 4.9E-29 180.7 9.7 170 1-213 38-254 (255)
97 2b6h_A ADP-ribosylation factor 99.9 5.2E-25 1.8E-29 175.2 6.7 151 1-214 39-191 (192)
98 2f9l_A RAB11B, member RAS onco 99.9 2.3E-23 7.8E-28 166.4 16.3 152 1-214 15-168 (199)
99 2x77_A ADP-ribosylation factor 99.9 2.8E-24 9.5E-29 169.8 10.8 152 1-215 32-185 (189)
100 1moz_A ARL1, ADP-ribosylation 99.9 6.2E-24 2.1E-28 166.5 12.6 146 1-214 28-180 (183)
101 1oix_A RAS-related protein RAB 99.9 6.4E-23 2.2E-27 163.1 16.3 151 1-213 39-191 (191)
102 3r7w_B Gtpase2, GTP-binding pr 99.9 1.4E-24 4.8E-29 186.1 6.7 155 1-215 9-175 (331)
103 2lkc_A Translation initiation 99.9 2E-22 6.7E-27 157.0 15.7 148 1-217 18-174 (178)
104 2fh5_B SR-beta, signal recogni 99.9 2.7E-23 9.1E-28 167.4 10.8 162 1-212 17-214 (214)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 4.7E-23 1.6E-27 176.0 10.7 156 1-214 13-181 (307)
106 3o47_A ADP-ribosylation factor 99.9 1.3E-23 4.3E-28 181.3 6.0 152 1-215 175-328 (329)
107 2wji_A Ferrous iron transport 99.9 1.8E-22 6.1E-27 156.5 10.3 150 1-212 13-163 (165)
108 3lvq_E ARF-GAP with SH3 domain 99.9 1.4E-21 4.7E-26 176.9 13.8 151 1-219 332-489 (497)
109 2cxx_A Probable GTP-binding pr 99.9 3.5E-22 1.2E-26 157.2 7.2 149 1-217 11-187 (190)
110 2dyk_A GTP-binding protein; GT 99.9 1E-21 3.4E-26 150.4 8.8 141 1-212 11-160 (161)
111 2qu8_A Putative nucleolar GTP- 99.9 2.6E-21 8.8E-26 157.8 11.7 162 1-215 39-206 (228)
112 3dpu_A RAB family protein; roc 99.8 1.1E-21 3.7E-26 179.3 7.9 151 1-216 51-210 (535)
113 3pqc_A Probable GTP-binding pr 99.8 4.7E-21 1.6E-25 151.1 9.6 152 1-214 33-194 (195)
114 2wjg_A FEOB, ferrous iron tran 99.8 2.5E-21 8.6E-26 152.3 7.9 154 1-216 17-171 (188)
115 1svi_A GTP-binding protein YSX 99.8 3.3E-21 1.1E-25 152.5 8.5 160 1-213 33-194 (195)
116 2gj8_A MNME, tRNA modification 99.8 7.2E-22 2.5E-26 154.4 4.4 149 1-213 14-165 (172)
117 3iev_A GTP-binding protein ERA 99.8 6.9E-20 2.3E-24 156.5 13.4 161 1-215 20-183 (308)
118 3a1s_A Iron(II) transport prot 99.8 1.1E-19 3.8E-24 151.5 11.7 152 1-214 15-167 (258)
119 3b1v_A Ferrous iron uptake tra 99.8 3.3E-20 1.1E-24 155.9 6.5 151 1-214 13-164 (272)
120 1nrj_B SR-beta, signal recogni 99.8 4.2E-20 1.4E-24 149.0 5.2 136 1-200 22-170 (218)
121 4dhe_A Probable GTP-binding pr 99.8 1.7E-19 5.9E-24 145.7 8.3 168 1-217 39-214 (223)
122 3iby_A Ferrous iron transport 99.8 7.5E-20 2.6E-24 152.4 6.0 153 1-211 11-164 (256)
123 1u0l_A Probable GTPase ENGC; p 99.8 1.7E-19 5.9E-24 153.6 7.4 136 5-210 31-169 (301)
124 4dcu_A GTP-binding protein ENG 99.8 2.5E-19 8.4E-24 160.7 8.2 159 1-214 205-369 (456)
125 2hjg_A GTP-binding protein ENG 99.8 1.8E-19 6.1E-24 160.8 6.9 159 1-214 185-349 (436)
126 3gee_A MNME, tRNA modification 99.8 1.7E-18 5.9E-23 155.9 12.2 145 1-213 243-397 (476)
127 1wf3_A GTP-binding protein; GT 99.8 5.7E-19 2E-23 150.4 8.5 153 1-213 17-172 (301)
128 2xtz_A Guanine nucleotide-bind 99.8 4.6E-19 1.6E-23 154.0 6.3 150 16-214 146-345 (354)
129 3i8s_A Ferrous iron transport 99.8 3E-19 1E-23 150.1 4.9 157 1-215 13-170 (274)
130 3k53_A Ferrous iron transport 99.8 1.6E-18 5.4E-23 145.2 9.1 155 1-216 13-168 (271)
131 1mky_A Probable GTP-binding pr 99.8 2.4E-18 8.2E-23 153.6 10.1 153 1-214 11-166 (439)
132 3qq5_A Small GTP-binding prote 99.7 8.7E-19 3E-23 155.5 6.7 152 1-215 44-197 (423)
133 1xzp_A Probable tRNA modificat 99.7 4E-18 1.4E-22 153.7 10.5 149 1-213 253-404 (482)
134 2e87_A Hypothetical protein PH 99.7 3E-17 1E-21 142.8 14.7 86 112-213 248-335 (357)
135 1cip_A Protein (guanine nucleo 99.7 1.2E-18 4E-23 151.5 5.6 147 16-215 162-345 (353)
136 1lnz_A SPO0B-associated GTP-bi 99.7 4.6E-18 1.6E-22 147.1 8.3 158 1-217 168-333 (342)
137 1azs_C GS-alpha; complex (lyas 99.7 7.1E-18 2.4E-22 148.4 8.0 146 17-214 187-385 (402)
138 3izy_P Translation initiation 99.7 3.1E-18 1.1E-22 155.9 4.9 151 1-215 14-169 (537)
139 3ohm_A Guanine nucleotide-bind 99.7 9.8E-18 3.4E-22 144.0 6.5 129 38-216 166-320 (327)
140 1zcb_A G alpha I/13; GTP-bindi 99.7 5.5E-17 1.9E-21 141.3 9.8 146 17-214 171-353 (362)
141 2hjg_A GTP-binding protein ENG 99.7 3.5E-18 1.2E-22 152.4 1.7 143 1-214 13-165 (436)
142 3geh_A MNME, tRNA modification 99.7 7.8E-17 2.7E-21 144.6 10.0 151 1-216 234-386 (462)
143 3sjy_A Translation initiation 99.7 9.9E-17 3.4E-21 141.7 10.5 120 38-217 74-195 (403)
144 1mky_A Probable GTP-binding pr 99.7 2.8E-16 9.4E-21 140.2 13.4 156 1-213 190-354 (439)
145 1s0u_A EIF-2-gamma, translatio 99.7 3E-16 1E-20 138.8 12.7 152 1-216 18-200 (408)
146 1ega_A Protein (GTP-binding pr 99.7 1.7E-16 5.8E-21 135.0 10.3 146 1-213 18-174 (301)
147 1wb1_A Translation elongation 99.7 2.2E-16 7.4E-21 142.5 10.9 146 1-213 29-188 (482)
148 4fid_A G protein alpha subunit 99.7 4.9E-17 1.7E-21 140.2 5.6 129 36-214 158-328 (340)
149 3cb4_D GTP-binding protein LEP 99.7 3.1E-16 1E-20 144.6 10.9 151 1-217 14-185 (599)
150 2ged_A SR-beta, signal recogni 99.7 1.2E-16 4.2E-21 125.9 6.8 106 1-159 58-172 (193)
151 2qag_A Septin-2, protein NEDD5 99.7 1.9E-17 6.5E-22 144.3 2.1 170 1-217 47-236 (361)
152 2ywe_A GTP-binding protein LEP 99.6 5.8E-16 2E-20 142.6 10.9 116 35-216 69-186 (600)
153 1kk1_A EIF2gamma; initiation o 99.6 9E-16 3.1E-20 135.8 11.2 89 112-216 108-202 (410)
154 2xtp_A GTPase IMAP family memb 99.6 7.9E-16 2.7E-20 127.6 9.3 166 1-214 32-208 (260)
155 1zo1_I IF2, translation initia 99.6 1.2E-16 4.2E-21 144.3 3.7 146 1-211 14-164 (501)
156 2c78_A Elongation factor TU-A; 99.6 1.1E-15 3.9E-20 134.9 9.6 154 1-215 21-213 (405)
157 2qtf_A Protein HFLX, GTP-bindi 99.6 2.5E-15 8.5E-20 131.0 11.5 161 1-215 189-355 (364)
158 3tr5_A RF-3, peptide chain rel 99.6 8.9E-16 3E-20 139.8 8.7 69 38-158 81-149 (528)
159 1d2e_A Elongation factor TU (E 99.6 1.8E-15 6.3E-20 133.3 10.4 151 1-215 13-196 (397)
160 1g7s_A Translation initiation 99.6 4.5E-15 1.5E-19 136.8 13.3 157 1-213 15-217 (594)
161 3j2k_7 ERF3, eukaryotic polype 99.6 2.4E-15 8.3E-20 134.2 11.0 113 38-206 94-217 (439)
162 1jny_A EF-1-alpha, elongation 99.6 4.1E-16 1.4E-20 139.0 5.0 116 35-206 80-205 (435)
163 3t5d_A Septin-7; GTP-binding p 99.6 3.1E-15 1.1E-19 125.4 9.9 177 1-213 18-203 (274)
164 1zun_B Sulfate adenylate trans 99.6 4E-15 1.4E-19 132.6 9.9 108 37-204 102-214 (434)
165 4dcu_A GTP-binding protein ENG 99.6 6.3E-16 2.1E-20 138.6 4.5 143 1-214 33-185 (456)
166 3p26_A Elongation factor 1 alp 99.6 1.5E-15 5.1E-20 137.1 6.4 113 33-203 105-227 (483)
167 1pui_A ENGB, probable GTP-bind 99.6 6.6E-15 2.3E-19 117.5 9.1 162 1-214 36-199 (210)
168 3lxx_A GTPase IMAP family memb 99.6 7.5E-15 2.6E-19 120.3 9.3 165 1-214 39-214 (239)
169 2elf_A Protein translation elo 99.6 3.1E-15 1.1E-19 130.7 6.4 140 1-213 31-179 (370)
170 1r5b_A Eukaryotic peptide chai 99.5 2E-15 6.8E-20 135.7 4.5 109 39-205 121-243 (467)
171 3izq_1 HBS1P, elongation facto 99.5 2.9E-14 9.9E-19 132.0 11.6 111 36-204 242-362 (611)
172 3avx_A Elongation factor TS, e 99.5 1.3E-14 4.4E-19 140.7 9.1 153 1-214 306-486 (1289)
173 2qnr_A Septin-2, protein NEDD5 99.5 1.9E-15 6.6E-20 128.5 3.0 78 125-217 140-217 (301)
174 2aka_B Dynamin-1; fusion prote 99.5 5E-16 1.7E-20 131.0 -0.8 85 112-211 164-250 (299)
175 1f60_A Elongation factor EEF1A 99.5 5.8E-15 2E-19 132.4 5.4 111 34-204 80-202 (458)
176 3lxw_A GTPase IMAP family memb 99.5 4.5E-14 1.5E-18 116.7 8.6 165 1-214 31-208 (247)
177 2dy1_A Elongation factor G; tr 99.5 1E-13 3.4E-18 129.6 10.3 104 1-156 19-139 (665)
178 3mca_A HBS1, elongation factor 99.5 2E-14 7E-19 132.6 4.5 101 38-202 254-371 (592)
179 3def_A T7I23.11 protein; chlor 99.4 1.7E-13 5.8E-18 114.0 8.6 115 1-157 46-165 (262)
180 1udx_A The GTP-binding protein 99.4 4.7E-13 1.6E-17 118.4 11.6 89 112-217 237-328 (416)
181 2qag_C Septin-7; cell cycle, c 99.4 1.4E-13 5E-18 121.8 7.9 174 1-213 41-226 (418)
182 2hf9_A Probable hydrogenase ni 99.4 2.7E-14 9.2E-19 115.5 1.8 59 143-213 164-223 (226)
183 2h5e_A Peptide chain release f 99.4 2E-12 6.7E-17 117.8 12.8 106 1-158 23-149 (529)
184 1h65_A Chloroplast outer envel 99.4 1E-12 3.4E-17 109.7 9.5 116 1-158 49-169 (270)
185 1dar_A EF-G, elongation factor 99.4 8.1E-13 2.8E-17 123.9 9.8 103 1-158 22-144 (691)
186 2wsm_A Hydrogenase expression/ 99.4 1.1E-12 3.8E-17 105.6 8.6 85 112-216 131-216 (221)
187 2yv5_A YJEQ protein; hydrolase 99.4 3.6E-12 1.2E-16 108.3 11.4 82 112-209 81-164 (302)
188 2j69_A Bacterial dynamin-like 99.4 1.2E-12 4E-17 122.9 8.3 99 112-214 202-325 (695)
189 2rdo_7 EF-G, elongation factor 99.3 1.2E-11 4.3E-16 116.1 13.1 71 36-158 79-149 (704)
190 3t34_A Dynamin-related protein 99.3 4E-13 1.4E-17 116.7 2.6 80 112-207 174-254 (360)
191 1jwy_B Dynamin A GTPase domain 99.3 8.6E-13 3E-17 112.0 3.7 87 112-214 169-262 (315)
192 2xex_A Elongation factor G; GT 99.3 8.5E-12 2.9E-16 117.1 10.7 103 1-158 20-142 (693)
193 1wxq_A GTP-binding protein; st 99.3 3.9E-12 1.3E-16 112.0 7.0 49 143-206 214-262 (397)
194 2x2e_A Dynamin-1; nitration, h 99.2 4.2E-13 1.5E-17 116.3 -1.8 86 112-210 169-254 (353)
195 3l82_B F-box only protein 4; T 99.2 1.1E-11 3.6E-16 99.4 4.8 111 45-215 108-224 (227)
196 3p32_A Probable GTPase RV1496/ 99.2 1.9E-11 6.4E-16 106.1 4.9 83 112-213 194-283 (355)
197 1jal_A YCHF protein; nucleotid 99.2 3.6E-10 1.2E-14 98.2 12.9 42 143-197 199-240 (363)
198 2qpt_A EH domain-containing pr 99.1 3.5E-11 1.2E-15 110.1 5.3 46 112-160 190-235 (550)
199 1yrb_A ATP(GTP)binding protein 99.1 8.8E-11 3E-15 96.8 6.4 98 112-213 139-256 (262)
200 1n0u_A EF-2, elongation factor 99.1 5.6E-11 1.9E-15 113.7 4.9 71 35-157 94-164 (842)
201 3l2o_B F-box only protein 4; s 99.0 2.1E-10 7.2E-15 96.1 5.8 110 46-215 194-309 (312)
202 2www_A Methylmalonic aciduria 99.0 1.3E-10 4.3E-15 100.7 1.9 82 112-212 189-277 (349)
203 2p67_A LAO/AO transport system 99.0 1.5E-10 5.3E-15 99.8 2.4 84 112-213 171-260 (341)
204 2dby_A GTP-binding protein; GD 98.9 2.3E-09 7.8E-14 93.4 9.2 50 144-205 202-253 (368)
205 3vqt_A RF-3, peptide chain rel 98.9 5E-09 1.7E-13 95.8 11.3 31 187-217 268-298 (548)
206 3h2y_A GTPase family protein; 98.8 5.5E-09 1.9E-13 91.0 6.5 82 112-212 71-158 (368)
207 3zvr_A Dynamin-1; hydrolase, D 98.8 2E-09 6.9E-14 101.3 2.4 83 112-210 189-274 (772)
208 4a9a_A Ribosome-interacting GT 98.7 5E-08 1.7E-12 85.1 10.7 110 1-156 82-195 (376)
209 3j25_A Tetracycline resistance 98.7 8.7E-09 3E-13 95.8 4.9 32 186-217 211-242 (638)
210 3ec1_A YQEH GTPase; atnos1, at 98.6 2.5E-08 8.7E-13 86.8 5.9 82 112-212 73-160 (369)
211 2qm8_A GTPase/ATPase; G protei 98.6 3.1E-08 1.1E-12 85.2 5.3 81 112-212 170-259 (337)
212 4fn5_A EF-G 1, elongation fact 98.4 1.4E-06 4.9E-11 81.9 12.2 32 186-217 263-294 (709)
213 1puj_A YLQF, conserved hypothe 98.3 1.3E-06 4.5E-11 73.2 6.9 79 112-213 25-105 (282)
214 2ohf_A Protein OLA1, GTP-bindi 98.2 2.8E-07 9.6E-12 80.7 2.2 53 1-53 32-100 (396)
215 3cnl_A YLQF, putative uncharac 97.8 1.2E-05 4E-10 66.7 3.8 76 111-210 22-97 (262)
216 1t9h_A YLOQ, probable GTPase E 97.8 1.5E-05 5.2E-10 67.5 4.1 86 109-207 85-170 (307)
217 2j37_W Signal recognition part 97.7 3.7E-05 1.3E-09 69.4 5.8 77 112-211 215-310 (504)
218 3ec1_A YQEH GTPase; atnos1, at 97.6 1.6E-05 5.5E-10 69.0 1.6 43 112-158 247-289 (369)
219 2rcn_A Probable GTPase ENGC; Y 97.5 0.0004 1.4E-08 60.0 9.1 84 109-207 129-212 (358)
220 2qag_B Septin-6, protein NEDD5 97.4 0.00039 1.3E-08 61.4 8.0 43 113-160 151-193 (427)
221 1ni3_A YCHF GTPase, YCHF GTP-b 97.4 0.00013 4.5E-09 63.8 4.3 51 1-51 30-97 (392)
222 3h2y_A GTPase family protein; 97.4 1.6E-05 5.6E-10 68.9 -1.4 43 112-158 246-288 (368)
223 3sop_A Neuronal-specific septi 97.0 0.0022 7.6E-08 53.0 8.5 47 110-160 111-157 (270)
224 1tq4_A IIGP1, interferon-induc 97.0 0.0038 1.3E-07 54.8 10.2 73 134-213 168-252 (413)
225 3dm5_A SRP54, signal recogniti 96.9 0.0036 1.2E-07 55.4 9.1 67 112-203 214-280 (443)
226 2v3c_C SRP54, signal recogniti 96.7 0.0012 4.1E-08 58.4 4.4 39 112-157 212-252 (432)
227 3cnl_A YLQF, putative uncharac 96.4 0.0014 4.9E-08 54.0 2.8 47 1-51 109-156 (262)
228 1puj_A YLQF, conserved hypothe 96.1 0.0038 1.3E-07 52.0 3.8 46 1-50 130-176 (282)
229 3kl4_A SRP54, signal recogniti 95.8 0.012 4E-07 52.0 5.6 65 112-201 213-277 (433)
230 1bif_A 6-phosphofructo-2-kinas 95.0 0.0017 6E-08 57.8 -2.4 35 112-150 122-156 (469)
231 1f5n_A Interferon-induced guan 94.9 0.015 5.2E-07 53.3 3.4 52 1-52 48-104 (592)
232 3e70_C DPA, signal recognition 94.2 0.096 3.3E-06 44.4 6.6 67 112-203 243-309 (328)
233 3szr_A Interferon-induced GTP- 89.3 1.4 4.8E-05 40.3 8.7 16 143-158 214-229 (608)
234 3q5d_A Atlastin-1; G protein, 88.9 0.3 1E-05 43.2 3.8 14 1-14 77-90 (447)
235 1j8m_F SRP54, signal recogniti 87.2 1 3.4E-05 37.4 5.8 66 112-203 214-280 (297)
236 1kgd_A CASK, peripheral plasma 79.9 0.59 2E-05 35.4 1.3 14 1-14 15-28 (180)
237 3a00_A Guanylate kinase, GMP k 77.8 0.74 2.5E-05 35.0 1.2 14 1-14 11-24 (186)
238 1ye8_A Protein THEP1, hypothet 77.4 0.78 2.7E-05 35.0 1.3 14 1-14 10-23 (178)
239 4dzz_A Plasmid partitioning pr 77.2 2.4 8.2E-05 32.1 4.1 43 112-157 99-144 (206)
240 3tr0_A Guanylate kinase, GMP k 77.0 0.8 2.7E-05 35.0 1.2 14 1-14 17-30 (205)
241 1lvg_A Guanylate kinase, GMP k 77.0 0.81 2.8E-05 35.3 1.3 13 1-13 14-26 (198)
242 1np6_A Molybdopterin-guanine d 76.9 0.82 2.8E-05 34.9 1.2 14 1-14 16-29 (174)
243 1zp6_A Hypothetical protein AT 76.5 0.85 2.9E-05 34.4 1.3 14 1-14 19-32 (191)
244 4dkx_A RAS-related protein RAB 76.3 0.94 3.2E-05 35.6 1.5 36 64-100 141-176 (216)
245 1htw_A HI0065; nucleotide-bind 75.4 0.97 3.3E-05 33.8 1.3 15 1-15 43-57 (158)
246 1znw_A Guanylate kinase, GMP k 74.6 1 3.5E-05 34.8 1.3 14 1-14 30-43 (207)
247 3kb2_A SPBC2 prophage-derived 74.2 1.1 3.6E-05 33.0 1.2 25 189-214 142-166 (173)
248 3c8u_A Fructokinase; YP_612366 74.0 1.1 3.7E-05 34.7 1.3 13 1-13 32-44 (208)
249 4gp7_A Metallophosphoesterase; 74.0 0.96 3.3E-05 33.9 0.9 12 1-12 19-30 (171)
250 1s96_A Guanylate kinase, GMP k 73.9 1.1 3.7E-05 35.4 1.2 14 1-14 26-39 (219)
251 1z6g_A Guanylate kinase; struc 73.4 1.1 3.9E-05 35.0 1.3 14 1-14 33-46 (218)
252 3do6_A Formate--tetrahydrofola 72.9 22 0.00076 31.7 9.3 122 64-213 273-417 (543)
253 3asz_A Uridine kinase; cytidin 72.8 1.2 4.1E-05 34.3 1.3 13 1-13 16-28 (211)
254 3ney_A 55 kDa erythrocyte memb 72.7 1.2 4.1E-05 34.7 1.3 14 1-14 29-42 (197)
255 3tau_A Guanylate kinase, GMP k 72.3 1.2 4.2E-05 34.4 1.2 14 1-14 18-31 (208)
256 2rcn_A Probable GTPase ENGC; Y 72.1 1.2 4.1E-05 38.1 1.2 14 1-14 225-238 (358)
257 2yv5_A YJEQ protein; hydrolase 72.0 1.2 4.2E-05 36.8 1.2 12 1-12 175-186 (302)
258 1ly1_A Polynucleotide kinase; 71.4 1.4 4.7E-05 32.7 1.3 13 1-13 12-24 (181)
259 3lw7_A Adenylate kinase relate 71.4 1.3 4.4E-05 32.4 1.1 11 1-11 11-21 (179)
260 2bdt_A BH3686; alpha-beta prot 71.3 1.4 4.7E-05 33.3 1.3 13 1-13 12-24 (189)
261 1xjc_A MOBB protein homolog; s 71.2 1.4 4.8E-05 33.5 1.3 13 1-13 14-26 (169)
262 1kag_A SKI, shikimate kinase I 71.2 1.4 4.7E-05 32.6 1.2 14 1-14 14-27 (173)
263 3ec2_A DNA replication protein 71.1 1.4 4.7E-05 33.0 1.2 14 1-14 48-61 (180)
264 2j41_A Guanylate kinase; GMP, 71.0 1.4 4.7E-05 33.6 1.2 14 1-14 16-29 (207)
265 3t61_A Gluconokinase; PSI-biol 70.9 1.4 4.8E-05 33.7 1.2 14 1-14 28-41 (202)
266 2qor_A Guanylate kinase; phosp 70.8 1.4 4.8E-05 33.9 1.2 14 1-14 22-35 (204)
267 1qhx_A CPT, protein (chloramph 70.3 1.5 5.1E-05 32.6 1.3 14 1-14 13-26 (178)
268 1nij_A Hypothetical protein YJ 69.7 1.5 5E-05 36.6 1.2 15 1-15 14-28 (318)
269 2pcj_A ABC transporter, lipopr 69.6 1.5 5.1E-05 34.7 1.2 13 1-13 40-52 (224)
270 2jaq_A Deoxyguanosine kinase; 69.6 1.6 5.3E-05 33.1 1.2 23 189-213 177-199 (205)
271 1nks_A Adenylate kinase; therm 69.5 1.6 5.4E-05 32.7 1.2 13 1-13 11-23 (194)
272 4eun_A Thermoresistant glucoki 69.2 1.6 5.5E-05 33.4 1.2 24 190-215 171-194 (200)
273 3tif_A Uncharacterized ABC tra 69.1 1.5 5.3E-05 34.9 1.2 13 1-13 41-53 (235)
274 4a74_A DNA repair and recombin 68.5 1.7 5.8E-05 33.6 1.3 15 1-15 35-49 (231)
275 2onk_A Molybdate/tungstate ABC 68.3 1.7 5.9E-05 34.8 1.3 14 1-14 34-47 (240)
276 1t9h_A YLOQ, probable GTPase E 68.3 0.76 2.6E-05 38.5 -0.9 14 1-14 183-196 (307)
277 1u0l_A Probable GTPase ENGC; p 68.2 1.6 5.3E-05 36.1 1.1 14 1-14 179-192 (301)
278 2ehv_A Hypothetical protein PH 68.0 1.7 5.9E-05 34.0 1.2 13 1-13 40-52 (251)
279 3b85_A Phosphate starvation-in 68.0 1.8 6.1E-05 33.9 1.3 14 1-14 32-45 (208)
280 2i3b_A HCR-ntpase, human cance 67.9 1.8 6E-05 33.4 1.2 13 1-13 11-23 (189)
281 1kht_A Adenylate kinase; phosp 67.7 1.8 6.2E-05 32.4 1.2 13 1-13 13-25 (192)
282 1jbk_A CLPB protein; beta barr 67.6 1.8 6.2E-05 31.9 1.2 14 1-14 53-66 (195)
283 2z0h_A DTMP kinase, thymidylat 67.1 1.9 6.5E-05 32.5 1.3 24 189-214 168-191 (197)
284 1gtv_A TMK, thymidylate kinase 67.0 1.2 4.1E-05 34.2 0.1 13 1-13 10-22 (214)
285 1ex7_A Guanylate kinase; subst 66.9 1.9 6.5E-05 33.2 1.2 17 198-214 168-184 (186)
286 3end_A Light-independent proto 66.9 38 0.0013 27.3 9.4 102 112-216 181-287 (307)
287 2rhm_A Putative kinase; P-loop 66.8 1.9 6.6E-05 32.3 1.3 13 1-13 15-27 (193)
288 1knq_A Gluconate kinase; ALFA/ 66.8 1.9 6.6E-05 31.9 1.2 22 190-213 151-172 (175)
289 2cbz_A Multidrug resistance-as 66.8 1.8 6.3E-05 34.4 1.2 13 1-13 41-53 (237)
290 2vp4_A Deoxynucleoside kinase; 66.6 1.8 6.2E-05 34.0 1.1 14 1-14 30-43 (230)
291 2jeo_A Uridine-cytidine kinase 66.6 1.9 6.6E-05 34.2 1.3 13 1-13 35-47 (245)
292 1sgw_A Putative ABC transporte 66.6 1.9 6.5E-05 33.9 1.2 13 1-13 45-57 (214)
293 1b0u_A Histidine permease; ABC 66.4 1.9 6.4E-05 35.0 1.2 13 1-13 42-54 (262)
294 2bbw_A Adenylate kinase 4, AK4 66.4 1.9 6.6E-05 34.1 1.2 23 190-215 213-235 (246)
295 1g6h_A High-affinity branched- 66.4 1.9 6.5E-05 34.8 1.2 14 1-14 43-56 (257)
296 3lnc_A Guanylate kinase, GMP k 66.1 1.7 5.7E-05 34.1 0.8 14 1-14 37-51 (231)
297 2pze_A Cystic fibrosis transme 66.1 1.9 6.7E-05 34.1 1.2 14 1-14 44-57 (229)
298 2d2e_A SUFC protein; ABC-ATPas 66.0 2 6.9E-05 34.5 1.3 14 1-14 39-52 (250)
299 3pzx_A Formate--tetrahydrofola 66.0 8.7 0.0003 34.4 5.3 122 64-213 287-429 (557)
300 2qi9_C Vitamin B12 import ATP- 65.5 2 6.9E-05 34.6 1.2 14 1-14 36-49 (249)
301 2if2_A Dephospho-COA kinase; a 65.5 2.1 7.3E-05 32.6 1.3 13 1-13 11-23 (204)
302 1ji0_A ABC transporter; ATP bi 65.3 2 7E-05 34.2 1.2 13 1-13 42-54 (240)
303 1vpl_A ABC transporter, ATP-bi 65.2 2.1 7E-05 34.7 1.2 14 1-14 51-64 (256)
304 2eyu_A Twitching motility prot 65.2 2.1 7.2E-05 34.7 1.2 13 1-13 35-47 (261)
305 2ff7_A Alpha-hemolysin translo 65.2 2.1 7E-05 34.4 1.2 14 1-14 45-58 (247)
306 2olj_A Amino acid ABC transpor 65.1 2.1 7E-05 34.9 1.2 13 1-13 60-72 (263)
307 1mv5_A LMRA, multidrug resista 65.1 2.1 7.1E-05 34.2 1.2 14 1-14 38-51 (243)
308 2zu0_C Probable ATP-dependent 65.0 2.2 7.4E-05 34.7 1.3 14 1-14 56-69 (267)
309 3gfo_A Cobalt import ATP-bindi 64.9 2.1 7.2E-05 35.1 1.2 13 1-13 44-56 (275)
310 2kjq_A DNAA-related protein; s 64.7 2.2 7.5E-05 31.3 1.1 14 1-14 46-59 (149)
311 3q9l_A Septum site-determining 64.6 8.9 0.0003 30.1 4.9 100 112-217 137-251 (260)
312 4g1u_C Hemin import ATP-bindin 64.3 2.1 7.2E-05 34.8 1.1 14 1-14 47-60 (266)
313 3uie_A Adenylyl-sulfate kinase 64.1 2.3 8E-05 32.5 1.3 13 1-13 35-47 (200)
314 3aez_A Pantothenate kinase; tr 63.8 2.3 7.9E-05 35.5 1.2 13 1-13 100-112 (312)
315 2w0m_A SSO2452; RECA, SSPF, un 63.7 2.4 8.2E-05 32.6 1.3 14 1-14 33-46 (235)
316 2ghi_A Transport protein; mult 63.7 2.3 7.8E-05 34.4 1.2 14 1-14 56-69 (260)
317 2plr_A DTMP kinase, probable t 63.6 2.4 8.2E-05 32.2 1.3 22 189-212 184-205 (213)
318 2ihy_A ABC transporter, ATP-bi 63.6 2.3 7.8E-05 34.9 1.2 14 1-14 57-70 (279)
319 2yz2_A Putative ABC transporte 63.5 2.3 7.9E-05 34.5 1.2 13 1-13 43-55 (266)
320 3cm0_A Adenylate kinase; ATP-b 63.4 2.4 8.3E-05 31.6 1.2 13 1-13 14-26 (186)
321 2nq2_C Hypothetical ABC transp 63.3 2.3 7.9E-05 34.3 1.1 14 1-14 41-54 (253)
322 3vaa_A Shikimate kinase, SK; s 63.3 2.5 8.4E-05 32.3 1.2 13 1-13 35-47 (199)
323 2pbr_A DTMP kinase, thymidylat 63.1 2.5 8.6E-05 31.6 1.2 23 189-213 168-190 (195)
324 1rz3_A Hypothetical protein rb 63.0 2.5 8.6E-05 32.4 1.3 13 1-13 32-44 (201)
325 2ixe_A Antigen peptide transpo 62.9 2.4 8.2E-05 34.6 1.2 14 1-14 55-68 (271)
326 1jjv_A Dephospho-COA kinase; P 62.8 2.5 8.7E-05 32.2 1.3 13 1-13 12-24 (206)
327 2wwf_A Thymidilate kinase, put 62.5 2.6 8.9E-05 32.2 1.3 25 189-215 176-200 (212)
328 3k9g_A PF-32 protein; ssgcid, 62.4 8.6 0.00029 30.5 4.5 42 112-155 168-209 (267)
329 1tev_A UMP-CMP kinase; ploop, 62.2 2.7 9.1E-05 31.4 1.3 23 189-213 171-193 (196)
330 2yvu_A Probable adenylyl-sulfa 62.1 2.7 9.2E-05 31.6 1.3 13 1-13 23-35 (186)
331 3bwd_D RAC-like GTP-binding pr 62.1 3.6 0.00012 30.2 1.9 36 65-100 146-181 (182)
332 2v54_A DTMP kinase, thymidylat 62.0 2.7 9.2E-05 31.8 1.3 14 1-14 14-27 (204)
333 2qt1_A Nicotinamide riboside k 61.9 2.7 9.3E-05 32.1 1.3 23 189-213 182-204 (207)
334 2atx_A Small GTP binding prote 61.7 3.8 0.00013 30.6 2.1 38 64-101 157-194 (194)
335 2cvh_A DNA repair and recombin 61.4 2.8 9.5E-05 32.1 1.3 13 1-13 30-42 (220)
336 2f1r_A Molybdopterin-guanine d 61.4 1.4 4.7E-05 33.4 -0.5 13 1-13 12-24 (171)
337 3trf_A Shikimate kinase, SK; a 61.4 2.8 9.7E-05 31.3 1.3 17 199-215 159-175 (185)
338 1cke_A CK, MSSA, protein (cyti 61.3 2.8 9.6E-05 32.4 1.3 13 1-13 15-27 (227)
339 3cwq_A Para family chromosome 61.3 18 0.00062 27.7 6.0 43 112-157 92-134 (209)
340 2pjz_A Hypothetical protein ST 61.0 2.7 9.3E-05 34.1 1.2 14 1-14 40-53 (263)
341 2p65_A Hypothetical protein PF 60.6 2.4 8.2E-05 31.2 0.7 14 1-14 53-66 (187)
342 1nn5_A Similar to deoxythymidy 60.4 2.9 0.0001 31.9 1.2 13 1-13 19-31 (215)
343 1sq5_A Pantothenate kinase; P- 59.8 3 0.0001 34.5 1.3 13 1-13 90-102 (308)
344 2pez_A Bifunctional 3'-phospho 59.7 3.2 0.00011 30.9 1.3 13 1-13 15-27 (179)
345 1njg_A DNA polymerase III subu 59.4 3.2 0.00011 31.7 1.2 13 1-13 55-67 (250)
346 3iij_A Coilin-interacting nucl 59.3 3.2 0.00011 30.9 1.2 13 1-13 21-33 (180)
347 2pt5_A Shikimate kinase, SK; a 59.2 3.2 0.00011 30.3 1.2 13 1-13 10-22 (168)
348 2bwj_A Adenylate kinase 5; pho 59.1 3.3 0.00011 31.2 1.3 13 1-13 22-34 (199)
349 1e6c_A Shikimate kinase; phosp 59.0 3.3 0.00011 30.4 1.3 13 1-13 12-24 (173)
350 4hlc_A DTMP kinase, thymidylat 59.0 3.2 0.00011 32.2 1.2 23 189-213 177-199 (205)
351 2vli_A Antibiotic resistance p 58.9 2.6 9E-05 31.3 0.7 17 199-215 156-172 (183)
352 2c95_A Adenylate kinase 1; tra 58.9 3.3 0.00011 31.1 1.3 13 1-13 19-31 (196)
353 3fb4_A Adenylate kinase; psych 58.8 3.3 0.00011 31.8 1.3 22 190-213 192-213 (216)
354 1qf9_A UMP/CMP kinase, protein 58.7 3.3 0.00011 30.8 1.3 13 1-13 16-28 (194)
355 2bbs_A Cystic fibrosis transme 58.7 3.1 0.00011 34.3 1.2 13 1-13 74-86 (290)
356 1gvn_B Zeta; postsegregational 58.7 3.2 0.00011 34.0 1.3 13 1-13 43-55 (287)
357 3b9q_A Chloroplast SRP recepto 58.6 3.2 0.00011 34.4 1.2 13 1-13 110-122 (302)
358 2qen_A Walker-type ATPase; unk 58.3 3.3 0.00011 34.0 1.3 14 1-14 41-54 (350)
359 3kta_A Chromosome segregation 58.3 3.4 0.00012 30.8 1.2 13 1-13 36-48 (182)
360 1zd8_A GTP:AMP phosphotransfer 58.1 3.4 0.00012 32.2 1.2 24 190-216 193-216 (227)
361 1n0w_A DNA repair protein RAD5 58.0 3.4 0.00012 32.1 1.3 15 1-15 34-48 (243)
362 1via_A Shikimate kinase; struc 57.9 3.5 0.00012 30.5 1.2 13 1-13 14-26 (175)
363 3tqc_A Pantothenate kinase; bi 57.5 3.5 0.00012 34.6 1.3 13 1-13 102-114 (321)
364 1odf_A YGR205W, hypothetical 3 57.4 3.5 0.00012 33.9 1.3 13 1-13 41-53 (290)
365 1rj9_A FTSY, signal recognitio 57.4 3.5 0.00012 34.2 1.3 66 112-202 222-287 (304)
366 2pt7_A CAG-ALFA; ATPase, prote 57.3 3.6 0.00012 34.5 1.3 14 1-14 181-194 (330)
367 1cr0_A DNA primase/helicase; R 57.2 3.6 0.00012 33.5 1.3 14 1-14 45-58 (296)
368 2gza_A Type IV secretion syste 57.2 3.5 0.00012 35.0 1.2 14 1-14 185-198 (361)
369 2cdn_A Adenylate kinase; phosp 57.1 3.7 0.00013 31.2 1.3 22 189-212 178-199 (201)
370 1ukz_A Uridylate kinase; trans 57.1 3.6 0.00012 31.2 1.2 13 1-13 25-37 (203)
371 3bos_A Putative DNA replicatio 56.9 3.7 0.00013 31.6 1.3 13 1-13 62-74 (242)
372 2v9p_A Replication protein E1; 56.9 3.6 0.00012 34.3 1.2 13 1-13 136-148 (305)
373 3dl0_A Adenylate kinase; phosp 56.9 3.7 0.00013 31.5 1.3 22 190-213 192-213 (216)
374 4ido_A Atlastin-1; GTPase, GTP 56.7 16 0.00056 32.2 5.5 18 35-52 136-153 (457)
375 3jvv_A Twitching mobility prot 56.6 3.6 0.00012 35.0 1.2 13 1-13 133-145 (356)
376 2fna_A Conserved hypothetical 56.6 3.7 0.00013 33.7 1.3 14 1-14 40-53 (357)
377 3ea0_A ATPase, para family; al 56.5 37 0.0013 26.1 7.2 44 112-157 142-186 (245)
378 2chg_A Replication factor C sm 56.4 3.8 0.00013 30.8 1.3 14 1-14 48-61 (226)
379 1y63_A LMAJ004144AAA protein; 56.0 3.9 0.00014 30.7 1.3 14 1-14 20-33 (184)
380 1zuh_A Shikimate kinase; alpha 56.0 4 0.00014 30.0 1.3 13 1-13 17-29 (168)
381 2ze6_A Isopentenyl transferase 55.8 3.9 0.00013 32.7 1.3 13 1-13 11-23 (253)
382 1ixz_A ATP-dependent metallopr 55.4 4 0.00014 32.3 1.3 14 1-14 59-72 (254)
383 1aky_A Adenylate kinase; ATP:A 55.4 4.1 0.00014 31.5 1.3 22 190-213 197-218 (220)
384 2oap_1 GSPE-2, type II secreti 55.3 5.5 0.00019 35.6 2.3 14 1-14 270-283 (511)
385 2ocp_A DGK, deoxyguanosine kin 55.2 4.1 0.00014 32.1 1.3 14 1-14 12-25 (241)
386 1lw7_A Transcriptional regulat 55.1 3.4 0.00011 35.0 0.8 14 1-14 180-193 (365)
387 4a9a_A Ribosome-interacting GT 55.0 25 0.00085 30.1 6.3 50 143-212 249-298 (376)
388 1e4v_A Adenylate kinase; trans 54.8 4.2 0.00014 31.3 1.3 22 189-212 192-213 (214)
389 2w58_A DNAI, primosome compone 54.8 4.2 0.00015 30.8 1.3 14 1-14 64-77 (202)
390 1p5z_B DCK, deoxycytidine kina 54.6 3.6 0.00012 32.9 0.9 23 189-213 235-257 (263)
391 1uf9_A TT1252 protein; P-loop, 54.5 4.3 0.00015 30.6 1.2 14 1-14 18-31 (203)
392 1z47_A CYSA, putative ABC-tran 54.5 4.2 0.00014 34.6 1.3 14 1-14 51-64 (355)
393 1zak_A Adenylate kinase; ATP:A 54.4 4.3 0.00015 31.4 1.3 23 189-213 187-209 (222)
394 2ewv_A Twitching motility prot 54.2 4.2 0.00014 34.7 1.2 13 1-13 146-158 (372)
395 1m7g_A Adenylylsulfate kinase; 54.2 4.4 0.00015 31.2 1.3 15 200-214 188-202 (211)
396 2iyv_A Shikimate kinase, SK; t 54.0 4.5 0.00015 30.1 1.3 13 1-13 12-24 (184)
397 3hjn_A DTMP kinase, thymidylat 54.0 4.4 0.00015 31.2 1.3 31 181-214 161-191 (197)
398 3a4m_A L-seryl-tRNA(SEC) kinas 53.9 4.3 0.00015 32.5 1.2 27 189-215 148-174 (260)
399 1vht_A Dephospho-COA kinase; s 53.9 4.2 0.00014 31.3 1.1 13 1-13 14-26 (218)
400 3fvq_A Fe(3+) IONS import ATP- 53.8 4.4 0.00015 34.6 1.3 14 1-14 40-53 (359)
401 2xb4_A Adenylate kinase; ATP-b 53.5 4.4 0.00015 31.5 1.2 22 189-212 201-222 (223)
402 3tui_C Methionine import ATP-b 53.2 4.5 0.00015 34.6 1.3 13 1-13 64-76 (366)
403 1p6x_A Thymidine kinase; P-loo 53.1 4.5 0.00015 34.2 1.2 13 1-13 17-29 (334)
404 2it1_A 362AA long hypothetical 53.1 4.6 0.00016 34.5 1.3 14 1-14 39-52 (362)
405 1in4_A RUVB, holliday junction 53.0 4.5 0.00016 33.7 1.3 14 1-14 61-74 (334)
406 2yyz_A Sugar ABC transporter, 52.9 4.6 0.00016 34.4 1.3 13 1-13 39-51 (359)
407 1g29_1 MALK, maltose transport 52.6 4.7 0.00016 34.5 1.3 13 1-13 39-51 (372)
408 3ihw_A Centg3; RAS, centaurin, 52.4 6.1 0.00021 29.5 1.8 36 64-99 144-179 (184)
409 2qby_A CDC6 homolog 1, cell di 52.3 4.7 0.00016 33.5 1.3 13 1-13 55-67 (386)
410 4e22_A Cytidylate kinase; P-lo 52.1 4.8 0.00016 32.1 1.2 12 1-12 37-48 (252)
411 2x8a_A Nuclear valosin-contain 52.1 4.8 0.00016 32.7 1.2 14 1-14 54-67 (274)
412 1p9r_A General secretion pathw 52.1 4.7 0.00016 35.1 1.2 14 1-14 177-190 (418)
413 2og2_A Putative signal recogni 52.1 4.8 0.00016 34.3 1.2 13 1-13 167-179 (359)
414 1v43_A Sugar-binding transport 51.9 4.9 0.00017 34.5 1.3 13 1-13 47-59 (372)
415 2obl_A ESCN; ATPase, hydrolase 51.8 4.9 0.00017 34.0 1.3 15 1-15 81-95 (347)
416 1nlf_A Regulatory protein REPA 51.7 5 0.00017 32.4 1.3 13 1-13 40-52 (279)
417 4eaq_A DTMP kinase, thymidylat 51.5 5 0.00017 31.6 1.2 23 189-213 201-223 (229)
418 2dr3_A UPF0273 protein PH0284; 51.5 5 0.00017 31.2 1.2 14 1-14 33-46 (247)
419 1e2k_A Thymidine kinase; trans 51.4 4.8 0.00016 34.0 1.1 13 1-13 14-26 (331)
420 2yhs_A FTSY, cell division pro 51.3 5 0.00017 35.9 1.3 67 112-203 413-479 (503)
421 3rlf_A Maltose/maltodextrin im 51.1 5.1 0.00017 34.5 1.3 13 1-13 39-51 (381)
422 3tlx_A Adenylate kinase 2; str 50.6 5.4 0.00018 31.6 1.3 21 190-212 221-241 (243)
423 1f2t_A RAD50 ABC-ATPase; DNA d 50.5 5.5 0.00019 29.1 1.2 12 1-12 33-44 (149)
424 1iy2_A ATP-dependent metallopr 50.0 5.5 0.00019 32.0 1.3 14 1-14 83-96 (278)
425 3be4_A Adenylate kinase; malar 49.7 5.7 0.00019 30.7 1.3 21 189-211 196-216 (217)
426 2px0_A Flagellar biosynthesis 49.6 5.6 0.00019 32.8 1.3 60 112-194 214-273 (296)
427 3reg_A RHO-like small GTPase; 49.5 9.4 0.00032 28.4 2.5 40 64-103 152-191 (194)
428 2xj4_A MIPZ; replication, cell 49.4 7 0.00024 31.6 1.8 17 141-157 175-192 (286)
429 2ph1_A Nucleotide-binding prot 49.4 15 0.00051 29.1 3.8 40 112-155 154-194 (262)
430 3nh6_A ATP-binding cassette SU 49.3 3.7 0.00013 34.2 0.1 13 1-13 90-102 (306)
431 2p5t_B PEZT; postsegregational 49.3 4.7 0.00016 32.1 0.8 14 1-14 42-55 (253)
432 3ake_A Cytidylate kinase; CMP 48.8 6 0.00021 29.9 1.3 13 1-13 12-24 (208)
433 1ak2_A Adenylate kinase isoenz 48.8 6 0.0002 30.9 1.3 22 190-213 208-229 (233)
434 1lv7_A FTSH; alpha/beta domain 48.7 5.9 0.0002 31.3 1.2 13 1-13 55-67 (257)
435 2grj_A Dephospho-COA kinase; T 48.6 6.1 0.00021 30.3 1.3 14 1-14 22-35 (192)
436 1wcv_1 SOJ, segregation protei 48.6 29 0.00099 27.2 5.4 44 112-157 135-183 (257)
437 2iwr_A Centaurin gamma 1; ANK 48.3 7.6 0.00026 28.3 1.7 36 64-99 133-168 (178)
438 1a7j_A Phosphoribulokinase; tr 48.2 4.8 0.00017 33.0 0.7 13 1-13 15-27 (290)
439 1ltq_A Polynucleotide kinase; 48.0 6.1 0.00021 32.0 1.2 13 1-13 12-24 (301)
440 1of1_A Thymidine kinase; trans 47.9 6 0.00021 34.0 1.2 13 1-13 59-71 (376)
441 3kjh_A CO dehydrogenase/acetyl 47.9 32 0.0011 26.4 5.5 41 112-155 155-195 (254)
442 1fnn_A CDC6P, cell division co 47.6 6.2 0.00021 32.9 1.3 14 1-14 54-67 (389)
443 3qf4_B Uncharacterized ABC tra 47.4 11 0.00038 34.2 3.0 13 1-13 391-403 (598)
444 3gd7_A Fusion complex of cysti 47.4 6.3 0.00022 34.0 1.3 13 1-13 57-69 (390)
445 2npi_A Protein CLP1; CLP1-PCF1 47.3 6.2 0.00021 34.8 1.3 14 1-14 148-161 (460)
446 3d31_A Sulfate/molybdate ABC t 47.3 4.3 0.00015 34.5 0.2 13 1-13 36-48 (348)
447 3h4m_A Proteasome-activating n 47.1 6.4 0.00022 31.5 1.2 14 1-14 61-74 (285)
448 1l8q_A Chromosomal replication 47.0 6.4 0.00022 32.4 1.2 13 1-13 47-59 (324)
449 1uj2_A Uridine-cytidine kinase 47.0 6.6 0.00022 31.1 1.3 13 1-13 32-44 (252)
450 1w5s_A Origin recognition comp 46.9 6.4 0.00022 33.2 1.2 13 1-13 62-74 (412)
451 4a82_A Cystic fibrosis transme 46.7 9.8 0.00033 34.4 2.5 13 1-13 377-389 (578)
452 1mh1_A RAC1; GTP-binding, GTPa 46.4 10 0.00034 27.7 2.2 36 66-101 146-181 (186)
453 1sxj_E Activator 1 40 kDa subu 46.4 6.4 0.00022 32.6 1.2 14 1-14 46-59 (354)
454 1pzn_A RAD51, DNA repair and r 45.5 7 0.00024 33.0 1.3 14 1-14 141-154 (349)
455 2v1u_A Cell division control p 45.2 7.1 0.00024 32.4 1.3 14 1-14 54-67 (387)
456 2r62_A Cell division protease 45.1 7.4 0.00025 30.9 1.3 13 1-13 54-66 (268)
457 2qz4_A Paraplegin; AAA+, SPG7, 44.6 7.5 0.00026 30.5 1.3 13 1-13 49-61 (262)
458 2dpy_A FLII, flagellum-specifi 44.3 7.4 0.00025 34.0 1.3 15 1-15 167-181 (438)
459 2f6r_A COA synthase, bifunctio 44.2 7.2 0.00025 31.7 1.1 13 1-13 85-97 (281)
460 1osn_A Thymidine kinase, VZV-T 44.2 7.6 0.00026 32.9 1.3 13 1-13 22-35 (341)
461 3b9p_A CG5977-PA, isoform A; A 44.1 7.5 0.00026 31.3 1.2 14 1-14 64-77 (297)
462 3qf7_A RAD50; ABC-ATPase, ATPa 43.9 7.6 0.00026 32.9 1.2 12 1-12 33-44 (365)
463 1cp2_A CP2, nitrogenase iron p 43.7 85 0.0029 24.4 7.6 43 112-156 142-187 (269)
464 4edh_A DTMP kinase, thymidylat 43.6 8.1 0.00028 30.1 1.3 23 189-213 183-205 (213)
465 1oxx_K GLCV, glucose, ABC tran 43.1 4.2 0.00014 34.6 -0.5 13 1-13 41-53 (353)
466 1vma_A Cell division protein F 43.0 8.2 0.00028 32.0 1.3 67 112-203 224-290 (306)
467 3nwj_A ATSK2; P loop, shikimat 42.9 8.2 0.00028 31.0 1.2 13 1-13 58-70 (250)
468 3pg5_A Uncharacterized protein 42.9 23 0.0008 29.7 4.2 39 175-214 300-347 (361)
469 2orw_A Thymidine kinase; TMTK, 42.8 8.4 0.00029 29.2 1.2 15 143-157 103-117 (184)
470 1m7b_A RND3/RHOE small GTP-bin 42.2 9.6 0.00033 28.1 1.5 36 64-99 146-182 (184)
471 2zts_A Putative uncharacterize 42.1 8.6 0.00029 29.8 1.2 13 1-13 40-52 (251)
472 2qby_B CDC6 homolog 3, cell di 42.0 8.5 0.00029 32.1 1.3 14 1-14 55-68 (384)
473 3v9p_A DTMP kinase, thymidylat 41.8 7.5 0.00026 30.8 0.8 23 189-213 203-225 (227)
474 1sxj_C Activator 1 40 kDa subu 41.4 8.8 0.0003 31.8 1.2 14 1-14 56-69 (340)
475 1ofh_A ATP-dependent HSL prote 41.4 8.9 0.00031 30.8 1.3 13 1-13 60-72 (310)
476 1yqt_A RNAse L inhibitor; ATP- 41.3 8.8 0.0003 34.5 1.3 14 1-14 57-70 (538)
477 3t15_A Ribulose bisphosphate c 41.1 9 0.00031 31.2 1.2 14 1-14 46-59 (293)
478 1d2n_A N-ethylmaleimide-sensit 41.1 9.1 0.00031 30.5 1.3 14 1-14 74-87 (272)
479 3ld9_A DTMP kinase, thymidylat 41.0 9.4 0.00032 30.1 1.3 13 1-13 31-43 (223)
480 3qks_A DNA double-strand break 40.9 9.3 0.00032 29.3 1.2 12 1-12 33-44 (203)
481 3co5_A Putative two-component 40.7 8.8 0.0003 27.5 1.0 14 1-14 37-50 (143)
482 1sxj_D Activator 1 41 kDa subu 40.7 9.2 0.00032 31.4 1.3 14 1-14 68-81 (353)
483 3syl_A Protein CBBX; photosynt 40.6 9.3 0.00032 30.9 1.3 13 1-13 77-89 (309)
484 1z6t_A APAF-1, apoptotic prote 40.5 9.2 0.00031 34.2 1.3 13 1-13 157-169 (591)
485 1svm_A Large T antigen; AAA+ f 40.3 9.4 0.00032 32.7 1.3 13 1-13 179-191 (377)
486 3ozx_A RNAse L inhibitor; ATP 40.2 9 0.00031 34.4 1.2 14 1-14 35-48 (538)
487 4tmk_A Protein (thymidylate ki 40.1 9.8 0.00033 29.7 1.2 23 189-213 183-205 (213)
488 4gzl_A RAS-related C3 botulinu 39.8 9.4 0.00032 28.9 1.1 35 64-98 169-203 (204)
489 3oes_A GTPase rhebl1; small GT 39.7 8.8 0.0003 28.8 0.9 47 64-111 152-198 (201)
490 3n70_A Transport activator; si 39.5 11 0.00036 27.1 1.3 15 1-15 34-48 (145)
491 1qhl_A Protein (cell division 39.4 6.6 0.00023 31.1 0.2 14 1-14 37-50 (227)
492 3euj_A Chromosome partition pr 39.2 9.9 0.00034 33.8 1.3 13 1-13 39-51 (483)
493 3cf0_A Transitional endoplasmi 39.1 10 0.00035 31.0 1.2 14 1-14 59-72 (301)
494 3zvl_A Bifunctional polynucleo 39.0 10 0.00034 32.8 1.3 13 1-13 268-280 (416)
495 3tmk_A Thymidylate kinase; pho 39.0 10 0.00035 29.7 1.2 25 188-213 177-201 (216)
496 3j16_B RLI1P; ribosome recycli 38.7 10 0.00035 34.7 1.3 14 1-14 113-126 (608)
497 3q3j_B RHO-related GTP-binding 38.6 12 0.0004 28.6 1.5 39 64-102 166-205 (214)
498 3lv8_A DTMP kinase, thymidylat 38.4 11 0.00037 30.0 1.2 22 190-213 206-227 (236)
499 3u02_A Putative transcription- 38.3 1.5E+02 0.0052 23.7 9.9 104 101-211 44-153 (252)
500 1j8m_F SRP54, signal recogniti 38.1 11 0.00038 31.0 1.3 12 1-12 108-119 (297)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.1e-34 Score=236.72 Aligned_cols=152 Identities=30% Similarity=0.509 Sum_probs=130.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+.+.|...|.||++..+ .+.+.+++..+.++||||+|++.|..+++.+++++
T Consensus 23 ~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a---------------- 86 (216)
T 4dkx_A 23 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDS---------------- 86 (216)
T ss_dssp TSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccc----------------
Confidence 7999999999999999999999997555 56788899999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++++||+.+. .|+..+.... +++|++|||||+|+.+.
T Consensus 87 --------------------------------~~~ilv~di~~~~Sf~~i~-~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 87 --------------------------------AAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred --------------------------------cEEEEEeecchhHHHHHHH-HHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 9999999999999999998 9999888764 67999999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
|.++.+++..+++++++ +|+|+||++|.||+++|+.+++.+..
T Consensus 134 ------------r~V~~~e~~~~a~~~~~-~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 134 ------------RQVSIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred ------------CcccHHHHhhHHHHhCC-eeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 77999999999999995 89999999999999999999998864
No 2
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=4.6e-31 Score=214.06 Aligned_cols=172 Identities=38% Similarity=0.744 Sum_probs=149.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|+++.+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 37 ~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 99 (214)
T 3q3j_B 37 QCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS----------------- 99 (214)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC-----------------
Confidence 799999999999999999999999988888888899999999999999999999999999888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||+++++||..+.+.|+..+....++.|++||+||+|+.....
T Consensus 100 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 148 (214)
T 3q3j_B 100 -------------------------------DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148 (214)
T ss_dssp -------------------------------SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHH
T ss_pred -------------------------------eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchh
Confidence 9999999999999999954499999999888899999999999987655
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC-HHHHHHHHHHHhcCCCCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVLCPVPTVP 220 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~-v~~lf~~l~~~i~~~~~~~~ 220 (228)
..........+.++.+++..+++.+++.+|+++||++|.| |+++|+++++.++......+
T Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~~ 209 (214)
T 3q3j_B 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPLP 209 (214)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC------
T ss_pred hhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCcCCC
Confidence 5555555556889999999999999966999999999998 99999999999987665443
No 3
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.8e-30 Score=206.33 Aligned_cols=166 Identities=65% Similarity=1.101 Sum_probs=148.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 28 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----------------- 90 (194)
T 2atx_A 28 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT----------------- 90 (194)
T ss_dssp TSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCC-----------------
Confidence 799999999999999998999999888877788888889999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++++|..+.+.|+..+..+.++.|++||+||+|+.....
T Consensus 91 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 139 (194)
T 2atx_A 91 -------------------------------DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 139 (194)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccccc
Confidence 9999999999999999997689999998877899999999999987665
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+++++.++.
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 140 TLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp HHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred chhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 555554445577899999999999997689999999999999999999998875
No 4
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=2.3e-30 Score=203.46 Aligned_cols=169 Identities=94% Similarity=1.493 Sum_probs=150.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 15 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 77 (186)
T 1mh1_A 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT----------------- 77 (186)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCC-----------------
Confidence 799999999999999998999999888888888899999999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|+++|+||+|+.....
T Consensus 78 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 126 (186)
T 1mh1_A 78 -------------------------------DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 126 (186)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH
T ss_pred -------------------------------cEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccch
Confidence 9999999999999999987679999988877899999999999987665
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
..+.......+.++.+++..+++.+++.+++++||++|.|++++|+++.+.++.+..
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 127 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred hhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence 555555555678899999999999996699999999999999999999999986543
No 5
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=2.6e-30 Score=205.59 Aligned_cols=160 Identities=42% Similarity=0.841 Sum_probs=145.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 33 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 95 (194)
T 3reg_A 33 AVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS----------------- 95 (194)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC-----------------
Confidence 799999999999999999999999988888888999999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+.+..++.|++||+||+|+.....
T Consensus 96 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 144 (194)
T 3reg_A 96 -------------------------------DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS 144 (194)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT
T ss_pred -------------------------------cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC
Confidence 9999999999999999985599999998888899999999999986422
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
+.+..+++..+++.+++..++++||++|.||+++|+++++.+...++.
T Consensus 145 ----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 145 ----------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp ----------TCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC-
T ss_pred ----------CcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCCC
Confidence 568889999999999975599999999999999999999999876654
No 6
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=2e-30 Score=204.76 Aligned_cols=166 Identities=43% Similarity=0.863 Sum_probs=146.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.||++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 17 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 79 (184)
T 1m7b_A 17 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS----------------- 79 (184)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCC-----------------
Confidence 799999999999999988899999888877788889899999999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++++|..+.+.|+..+....++.|++||+||+|+.+...
T Consensus 80 -------------------------------~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 128 (184)
T 1m7b_A 80 -------------------------------DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 128 (184)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHH
T ss_pred -------------------------------cEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchh
Confidence 9999999999999999984489999988878899999999999987554
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEeccc-CCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~-~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++.+++.+|+++||+ ++.||+++|+++++.+++
T Consensus 129 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 129 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred hHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 444444555578999999999999986699999999 689999999999998874
No 7
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=1.2e-30 Score=210.28 Aligned_cols=165 Identities=61% Similarity=1.029 Sum_probs=142.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 19 ~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 81 (212)
T 2j0v_A 19 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA----------------- 81 (212)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC-----------------
Confidence 799999999999999998999999888887788899999999999999999999998888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+..+.++.|++||+||+|+.....
T Consensus 82 -------------------------------d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 82 -------------------------------DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcc
Confidence 9999999999999999997689999998877899999999999976532
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
... ...+.++.+++..+++.+++.+++++||++|.||+++|+++++.+.....
T Consensus 131 ~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 131 YLA----DHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp HHH----TCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred ccc----cccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhh
Confidence 111 11235688889999999996699999999999999999999999987544
No 8
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=9.6e-31 Score=209.54 Aligned_cols=166 Identities=27% Similarity=0.443 Sum_probs=135.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 34 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 96 (201)
T 3oes_A 34 CVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV----------------- 96 (201)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC-----------------
T ss_pred CcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC-----------------
Confidence 799999999999999999999999888877777788889999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .++|++||+||+|+...
T Consensus 97 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 97 -------------------------------HGYVLVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp -------------------------------CEEEEEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 9999999999999999998 9998887763 46899999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCCCCCcccC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 228 (228)
+.++..++..+++.+++ +++++||++|.||+++|.++++.+........++++|.||
T Consensus 145 ------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~~~~~~~c~l~ 201 (201)
T 3oes_A 145 ------------REVQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201 (201)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHHHC-------------
T ss_pred ------------cccCHHHHHHHHHHhCC-eEEEEeCCCCCCHHHHHHHHHHHHHhhhhhhccccccccC
Confidence 56888899999999995 9999999999999999999999999888887888889875
No 9
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=205.73 Aligned_cols=167 Identities=57% Similarity=0.961 Sum_probs=140.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 30 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 92 (201)
T 2q3h_A 30 AVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT----------------- 92 (201)
T ss_dssp TSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC-----------------
Confidence 799999999999999988899999888888888899999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+..+.++.|++||+||+|+.....
T Consensus 93 -------------------------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 141 (201)
T 2q3h_A 93 -------------------------------DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK 141 (201)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHH
T ss_pred -------------------------------cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchh
Confidence 9999999999999999996579999998878899999999999987655
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+++++.++..
T Consensus 142 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 142 VLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 4444444445778889999999999966999999999999999999999988754
No 10
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=5.5e-30 Score=205.99 Aligned_cols=165 Identities=95% Similarity=1.490 Sum_probs=149.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+.+.+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 40 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 102 (204)
T 4gzl_A 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT----------------- 102 (204)
T ss_dssp TSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC-----------------
Confidence 799999999999999999999999888888888899999999999999999999888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+...|+..+....++.|++||+||+|+.....
T Consensus 103 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 103 -------------------------------DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 9999999999999999997689999998888899999999999998877
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+++++.++
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~l 204 (204)
T 4gzl_A 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTTC
T ss_pred hhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHhC
Confidence 77777777778899999999999999878999999999999999999998653
No 11
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=6.1e-30 Score=207.21 Aligned_cols=168 Identities=50% Similarity=0.970 Sum_probs=130.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 44 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~----------------- 106 (214)
T 2j1l_A 44 GCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDA----------------- 106 (214)
T ss_dssp TSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CE-----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccC-----------------
Confidence 799999999999999988899999888888888899999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|++||+||+|+.....
T Consensus 107 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 155 (214)
T 2j1l_A 107 -------------------------------SVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155 (214)
T ss_dssp -------------------------------EEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch
Confidence 9999999999999999997679999988878899999999999988766
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+++++.++..+
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 156 LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred hhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 55555555567899999999999999669999999999999999999999988543
No 12
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=3e-29 Score=201.01 Aligned_cols=166 Identities=57% Similarity=1.002 Sum_probs=148.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 35 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 97 (201)
T 2gco_A 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT----------------- 97 (201)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCC-----------------
Confidence 799999999999999988899999888877788899999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++++|..+.+.|+..+....++.|+++|+||+|+.....
T Consensus 98 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 98 -------------------------------DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 9999999999999999995589999988877899999999999988766
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+++++.+++
T Consensus 147 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred chhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 555555555677899999999999997689999999999999999999998764
No 13
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=6.3e-30 Score=206.26 Aligned_cols=166 Identities=43% Similarity=0.863 Sum_probs=146.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 100 (205)
T 1gwn_A 38 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS----------------- 100 (205)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC-----------------
Confidence 799999999999999998899999888877778888899999999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|++||+||+|+.....
T Consensus 101 -------------------------------d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 149 (205)
T 1gwn_A 101 -------------------------------DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 149 (205)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchh
Confidence 9999999999999999994499999988877899999999999987555
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEeccc-CCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~-~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++.+++.+|+++||+ ++.||+++|+.+++.+++
T Consensus 150 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 150 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 445555555578999999999999986699999999 689999999999998764
No 14
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.4e-29 Score=200.36 Aligned_cols=169 Identities=54% Similarity=0.957 Sum_probs=143.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 35 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 97 (207)
T 2fv8_A 35 ACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT----------------- 97 (207)
T ss_dssp TSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCC-----------------
Confidence 799999999999999988888999887877788899999999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|+++|+||+|+.....
T Consensus 98 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (207)
T 2fv8_A 98 -------------------------------DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146 (207)
T ss_dssp -------------------------------CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc
Confidence 9999999999999999995589999988878899999999999987665
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
..+.......+.++.+++..+++.+++.+++++||++|.|++++|+++.+.++.++.
T Consensus 147 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred chhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 555555555577889999999999997689999999999999999999999987543
No 15
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=8.7e-30 Score=199.65 Aligned_cols=165 Identities=62% Similarity=1.044 Sum_probs=126.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 18 ~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 80 (182)
T 3bwd_D 18 AVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA----------------- 80 (182)
T ss_dssp TSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCC-----------------
Confidence 799999999999999988899999888877777788889999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|+++|+||+|+.+...
T Consensus 81 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 81 -------------------------------DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcc
Confidence 9999999999999999997679999998877899999999999976543
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
..+. ....+.++.+++..+++.+++.+++++||++|.|++++|+++++.++.+
T Consensus 130 ~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 130 FFID--HPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp HHHH--C--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred cccc--cccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 2111 1223557888999999999966999999999999999999999988753
No 16
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=3.9e-29 Score=196.16 Aligned_cols=157 Identities=27% Similarity=0.410 Sum_probs=139.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|.+..+...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 16 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 78 (181)
T 3t5g_A 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI----------------- 78 (181)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcC-----------------
Confidence 799999999999999999999999888888888999999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|+.+. .|+..+.... .+.|++||+||+|+...
T Consensus 79 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 79 -------------------------------NGYILVYSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 9999999999999999998 8988887664 37899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTV 219 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~ 219 (228)
+.++.+++..+++.+++ +++++||++|.|++++|.++++.+...+...
T Consensus 127 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 127 ------------RVISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTSHHHHHHHHHHHHHHHHTC----
T ss_pred ------------ceecHHHHHHHHHHhCC-cEEEEecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence 66889999999999995 8999999999999999999999998766543
No 17
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=202.50 Aligned_cols=152 Identities=29% Similarity=0.512 Sum_probs=136.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 24 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 86 (206)
T 2bov_A 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG----------------- 86 (206)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC-----------------
Confidence 799999999999999988999999888888888899999999999999988877776666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+..... +.|++||+||+|+...
T Consensus 87 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 87 -------------------------------EGFLCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 9999999999999999997 89988887754 7999999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +++++||++|.||+++|.++++.+..
T Consensus 135 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 135 ------------RQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------ccccHHHHHHHHHHhCC-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45788889999999995 89999999999999999999998864
No 18
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=3.6e-29 Score=197.07 Aligned_cols=151 Identities=32% Similarity=0.555 Sum_probs=133.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|..+.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 14 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 76 (189)
T 4dsu_A 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 76 (189)
T ss_dssp TSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcC-----------------
Confidence 799999999999999988999999888888888999999999999999999888887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+..
T Consensus 77 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~- 123 (189)
T 4dsu_A 77 -------------------------------EGFLCVFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPS- 123 (189)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSS-
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCcc-
Confidence 9999999999999999998 8888887754 4799999999999985
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.++ .+++++||++|.|++++|.++.+.+..
T Consensus 124 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 124 ------------RTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp ------------CSSCHHHHHHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4577888999999999 589999999999999999999998863
No 19
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=198.72 Aligned_cols=151 Identities=28% Similarity=0.472 Sum_probs=131.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|+++.+...+.+++..+.+.+||++|++.+..+ ..+++.+
T Consensus 31 ~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~----------------- 92 (187)
T 3c5c_A 31 GAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA----------------- 92 (187)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTC-----------------
T ss_pred CCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhC-----------------
Confidence 7999999999999999999999998888777888999999999999999887764 4455666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl~ 156 (228)
|++++|||++++++|..+. .|+..+.... .+.|++||+||+|+.
T Consensus 93 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 93 -------------------------------HAFLVVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 9999999999999999998 8999888763 579999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecc-cCCCCHHHHHHHHHHHhcC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSA-LTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa-~~~~~v~~lf~~l~~~i~~ 214 (228)
.. +.++.+++..+++.+++ +++++|| ++|.||+++|+++++.+.+
T Consensus 141 ~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 141 QY------------RQVTKAEGVALAGRFGC-LFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp GG------------CSSCHHHHHHHHHHHTC-EEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred hc------------CccCHHHHHHHHHHcCC-cEEEEeecCccccHHHHHHHHHHHHhh
Confidence 64 56888999999999995 9999999 8999999999999998764
No 20
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=4.7e-29 Score=197.61 Aligned_cols=151 Identities=21% Similarity=0.347 Sum_probs=131.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+| ...+...+.+++..+.+.+|||+|++.+. +++.+
T Consensus 30 ~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~----------------- 86 (184)
T 3ihw_A 30 SSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV----------------- 86 (184)
T ss_dssp TSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCC-----------------
Confidence 79999999999999998888888 44566788899999999999999998775 55555
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.||..+. .|+..+.... .+.|++||+||+|+...
T Consensus 87 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (184)
T 3ihw_A 87 -------------------------------DAVVFVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAA 134 (184)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHTTSCGGGSCEEEEEECTTCBTT
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8999998764 47899999999999632
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
. .+.++.+++..+++.++..+|+++||++|.||+++|+++++.+.+.+
T Consensus 135 ~----------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 135 N----------PRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp B----------CCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred c----------ccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 2 16788999999999998569999999999999999999999887543
No 21
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=1.2e-28 Score=190.07 Aligned_cols=152 Identities=28% Similarity=0.498 Sum_probs=134.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~----------------- 75 (167)
T 1c1y_A 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG----------------- 75 (167)
T ss_dssp TSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccC-----------------
Confidence 799999999999999988899999888877788888899999999999998887777667666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 76 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 76 -------------------------------QGFALVYSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 9999999999999999988 888887765 357999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++..+++++||++|.|++++|+++.+.+.
T Consensus 124 ------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 124 ------------RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp ------------CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred ------------ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 5578888999999884369999999999999999999998874
No 22
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=2e-28 Score=192.41 Aligned_cols=152 Identities=32% Similarity=0.475 Sum_probs=137.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+.....+++..+.+.+||++|++.+..++..++..+
T Consensus 28 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 90 (183)
T 3kkq_A 28 GVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG----------------- 90 (183)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC-----------------
Confidence 799999999999999999999999888888888999999999999999999888887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 91 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 91 -------------------------------DGFLIVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 9999999999999999998 888888664 357899999999999874
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEeccc-CCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~-~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||+ +|.||+++|+++.+.+.+
T Consensus 139 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 139 ------------RKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp ------------CCSCHHHHHHHHHHHT-CCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred ------------cCcCHHHHHHHHHHhC-CeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 5688899999999999 589999999 999999999999998764
No 23
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=7.7e-29 Score=198.86 Aligned_cols=155 Identities=24% Similarity=0.434 Sum_probs=129.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 39 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 102 (201)
T 2hup_A 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA---------------- 102 (201)
T ss_dssp TSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC----------------
T ss_pred CCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC----------------
Confidence 7999999999999999888889987555 56778889889999999999998888777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 103 --------------------------------d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 103 --------------------------------NGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp --------------------------------SEEEEEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 9999999999999999998 9999988876 57999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.++.+++..+++.+++.+++++||++|.||+++|.++++.+....
T Consensus 150 ------------~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 150 ------------REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp ------------CCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred ------------cccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 5588889999999999558999999999999999999999887543
No 24
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=1.6e-28 Score=192.17 Aligned_cols=150 Identities=20% Similarity=0.274 Sum_probs=126.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|.. +.||+++.+...+.+++..+.+.+||++|++. ..+++++
T Consensus 17 ~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~----------------- 73 (178)
T 2iwr_A 17 RSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWA----------------- 73 (178)
T ss_dssp GGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhC-----------------
Confidence 799999999999999986 88898888888888999999999999999876 2345555
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh---C-CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH---C-PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~---~-~~~piilv~nK~Dl~ 156 (228)
|++++|||+++++||..+. .|+..+... . ++.|++||+||+|+.
T Consensus 74 -------------------------------d~~ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 74 -------------------------------DAVIFVFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999998 876665543 2 478999999999995
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
... .+.++.+++..+++.++..+++++||++|.|++++|+++++.+...
T Consensus 122 ~~~----------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 122 ASS----------PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp TTB----------CCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ccc----------cCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 321 1568889999999887446999999999999999999999988653
No 25
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.8e-29 Score=197.39 Aligned_cols=152 Identities=25% Similarity=0.425 Sum_probs=132.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 80 (199)
T 2gf0_A 18 GVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG----------------- 80 (199)
T ss_dssp TSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC-----------------
T ss_pred CCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC-----------------
Confidence 799999999999999988888998877777778899999999999999988877666666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLRD 157 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+..
T Consensus 81 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 81 -------------------------------HAFILVFSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 9999999999999999887 7777776543 4689999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+..+++..+++.+++ +++++||++|.||+++|+++++.+...
T Consensus 129 -------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 129 -------------REVDTREAQAVAQEWKC-AFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp -------------CSSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred -------------cccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 34677888899999994 899999999999999999999988654
No 26
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=4.7e-29 Score=196.00 Aligned_cols=153 Identities=28% Similarity=0.573 Sum_probs=107.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 18 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 81 (183)
T 2fu5_C 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA---------------- 81 (183)
T ss_dssp CC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTC----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcC----------------
Confidence 7999999999999998888888886555 45678899999999999999999998888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 82 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 82 --------------------------------MGIMLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 9999999999999999998 8999888764 57899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.+++ +++++||++|.||+++|.++.+.+...
T Consensus 129 ------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 129 ------------RQVSKERGEKLALDYGI-KFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred ------------CcCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45788889999999994 899999999999999999999988753
No 27
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=2.3e-28 Score=190.91 Aligned_cols=156 Identities=28% Similarity=0.467 Sum_probs=136.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 19 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~----------------- 81 (181)
T 2fn4_A 19 GVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG----------------- 81 (181)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC-----------------
Confidence 799999999999999999999999888887888899999999999999998887777777666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-C-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-C-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.+. . .+.|+++|+||+|+...
T Consensus 82 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 82 -------------------------------HGFLLVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 888887443 3 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
+.++.+++..++..+++ +++++||++|.|++++|+++.+.+.+.+..
T Consensus 130 ------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 130 ------------RQVPRSEASAFGASHHV-AYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred ------------cccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 45778889999999994 999999999999999999999998765443
No 28
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=1.7e-28 Score=188.98 Aligned_cols=152 Identities=29% Similarity=0.511 Sum_probs=132.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 14 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~----------------- 76 (168)
T 1u8z_A 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG----------------- 76 (168)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcC-----------------
Confidence 799999999999999988899999888877788899999999999999988877766666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+..... +.|+++|+||+|+.+.
T Consensus 77 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 77 -------------------------------EGFLCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 89888887653 7999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +++++||++|.|++++|+++.+.+.+
T Consensus 125 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 125 ------------RQVSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ------------CccCHHHHHHHHHHcCC-eEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 45788889999999994 89999999999999999999998864
No 29
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=3.8e-28 Score=188.03 Aligned_cols=152 Identities=29% Similarity=0.559 Sum_probs=129.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+. ..+.+++..+.+.+||++|++.+..++..++..+
T Consensus 16 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 79 (170)
T 1z08_A 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDS---------------- 79 (170)
T ss_dssp TSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccC----------------
Confidence 79999999999999998888888866554 6677788899999999999999998888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 80 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 80 --------------------------------NGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 9999999999999999998 8998887754 47899999999999765
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+.+
T Consensus 127 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 127 ------------RHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred ------------cccCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 5578888999999999 589999999999999999999998764
No 30
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.3e-28 Score=187.46 Aligned_cols=154 Identities=29% Similarity=0.536 Sum_probs=136.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 19 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 82 (181)
T 3tw8_B 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGT---------------- 82 (181)
T ss_dssp TSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccC----------------
Confidence 7999999999999999888888886554 46778899999999999999999999998888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++.++..+. .|+..+....++.|++||+||+|+...
T Consensus 83 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~- 128 (181)
T 3tw8_B 83 --------------------------------HGVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPER- 128 (181)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGG-
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchh-
Confidence 9999999999999999998 899999988888999999999998865
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+..+++..++..+++ +++++||++|.|++++|+++.+.+...+
T Consensus 129 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 129 -----------KVVETEDAYKFAGQMGI-QLFETSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp -----------CCSCHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred -----------cccCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56788889999999995 9999999999999999999999887543
No 31
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=3.5e-28 Score=188.25 Aligned_cols=153 Identities=27% Similarity=0.362 Sum_probs=120.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCccccc-CCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDR-LRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++..+...+.++. .+.+...+.+++..+.+.+||++|++.+.. ++..++..+
T Consensus 12 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~--------------- 76 (169)
T 3q85_A 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTG--------------- 76 (169)
T ss_dssp TSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHC---------------
T ss_pred CCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccC---------------
Confidence 799999999999877765555544 555567788899999999999999988765 666566666
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~ 156 (228)
|++++|||++++++|..+. .|+..+..... +.|+++|+||+|+.
T Consensus 77 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 77 ---------------------------------DAFLIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred ---------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 9999999999999999998 88888887754 79999999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+. +.++.+++..+++.+++ +++++||++|.|++++|+++++.+...
T Consensus 123 ~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 123 RS------------REVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp GG------------CCSCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred hc------------ccCCHHHHHHHHHHcCC-cEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 64 56888999999999995 999999999999999999999988654
No 32
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=5.8e-28 Score=186.50 Aligned_cols=151 Identities=24% Similarity=0.352 Sum_probs=112.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.+..+. ...++.+..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 12 ~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----------------- 73 (166)
T 3q72_A 12 GVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMG----------------- 73 (166)
T ss_dssp TSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------C-----------------
T ss_pred CCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhC-----------------
Confidence 79999999999876654 445666667777788899999999999999999998988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 74 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 74 -------------------------------DAYVIVYSVTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp -------------------------------CEEEEEEETTCHHHHHHHH-HHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 9999999999999999998 8888887653 57999999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+..
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 122 ------------REVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 5688889999999999 499999999999999999999998764
No 33
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.6e-27 Score=186.34 Aligned_cols=155 Identities=30% Similarity=0.549 Sum_probs=127.2
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+. ..+.+|++..+. ..+.+++..+.+.+||++|++.+..++..++..+
T Consensus 20 ~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~--------------- 84 (180)
T 2g6b_A 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA--------------- 84 (180)
T ss_dssp TSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC---------------
T ss_pred CCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC---------------
Confidence 79999999999999885 467788866554 4557899999999999999999998888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.++..+. .|+..+.... .+.|++||+||+|+..
T Consensus 85 ---------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 85 ---------------------------------HALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 9999999999999999998 8999888776 5799999999999987
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
. +.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.+.+.
T Consensus 131 ~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 131 E------------RVVKREDGEKLAKEYGL-PFMETSAKTGLNVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp C------------CCSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHC---
T ss_pred c------------cccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 5 45778889999999995 89999999999999999999999876543
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=194.84 Aligned_cols=155 Identities=27% Similarity=0.366 Sum_probs=127.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCccccc-CCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDR-LRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++..+...+.+++ .+.+...+.+++..+.+.+||++|++.+.. ++..+++.+
T Consensus 33 ~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~--------------- 97 (195)
T 3cbq_A 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG--------------- 97 (195)
T ss_dssp TSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC---------------
T ss_pred CCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC---------------
Confidence 799999999998654433344444 445567778899999999999999987653 555555555
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++|+|||++++.||..+. .|+..+.... .+.|++||+||+|+.
T Consensus 98 ---------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 98 ---------------------------------DAFLIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 9999999999999999998 8998888765 479999999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.. +.++.+++..+++.+++ +++++||++|.||+++|+++++.+...+.
T Consensus 144 ~~------------~~v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 144 RS------------REVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp TT------------CCSCHHHHHHHHHHTTC-EEEEEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred cc------------CCcCHHHHHHHHHHhCC-EEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 64 56888899999999995 89999999999999999999999876443
No 35
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=7.3e-28 Score=185.89 Aligned_cols=152 Identities=28% Similarity=0.471 Sum_probs=135.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 15 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 78 (168)
T 1z2a_A 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGA---------------- 78 (168)
T ss_dssp TSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCC----------------
Confidence 7999999999999999888889886544 56678888889999999999999888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++.++..+. .|+..+.....+.|+++|+||+|+...
T Consensus 79 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~- 124 (168)
T 1z2a_A 79 --------------------------------QACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD- 124 (168)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGG-
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccCcc-
Confidence 9999999999999999998 899888877678999999999999864
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +++++||++|.|++++|+++.+.+++
T Consensus 125 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 125 -----------SCIKNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp -----------CSSCHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred -----------cccCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 45778889999999995 99999999999999999999998864
No 36
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=7.6e-28 Score=193.57 Aligned_cols=153 Identities=24% Similarity=0.479 Sum_probs=135.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 36 ~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~---------------- 99 (201)
T 2ew1_A 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA---------------- 99 (201)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC----------------
Confidence 7999999999999999888888886544 56778899999999999999999988888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 100 --------------------------------d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 100 --------------------------------NALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 9999999999999999998 9999988775 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++..+ .+++++||++|.||+++|.++++.+...
T Consensus 147 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 147 ------------REVSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp ------------CSSCHHHHHHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5578888999999999 4899999999999999999999988753
No 37
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.7e-28 Score=196.67 Aligned_cols=154 Identities=27% Similarity=0.372 Sum_probs=125.0
Q ss_pred CCChhhhHHhhhhC--CCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc-cccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED-YDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|++. .|...+.++..+.+.+.+.+++..+.+.+|||+|++. +..+.+.+++.+
T Consensus 47 ~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a-------------- 112 (211)
T 2g3y_A 47 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG-------------- 112 (211)
T ss_dssp TSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC--------------
T ss_pred CCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC--------------
Confidence 79999999999954 3454444433455667788899999999999999876 444556666766
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDL 155 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl 155 (228)
+++++|||++++.||+.+. .|...+... ..++|++|||||+||
T Consensus 113 ----------------------------------~~~ilVydvt~~~sf~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 157 (211)
T 2g3y_A 113 ----------------------------------DAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDL 157 (211)
T ss_dssp ----------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred ----------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEChHH
Confidence 9999999999999999998 888777654 247999999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+. +.++.+++..++..+++ +|+|+||++|.||+++|+++++.+...+
T Consensus 158 ~~~------------r~v~~~e~~~~a~~~~~-~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 158 VRC------------REVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp GGG------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred hcC------------ceEeHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 764 56788888899999995 8999999999999999999999886543
No 38
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=1.8e-27 Score=203.69 Aligned_cols=167 Identities=93% Similarity=1.498 Sum_probs=150.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 165 ~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 227 (332)
T 2wkq_A 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT----------------- 227 (332)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTC-----------------
T ss_pred CCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCC-----------------
Confidence 799999999999999999999999988888888999999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....+++|+++|+||+|+.....
T Consensus 228 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 276 (332)
T 2wkq_A 228 -------------------------------DVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 276 (332)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHH
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccc
Confidence 9999999999999999987679999988877899999999999987665
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
..+.......+.++.+++..+++.+++.+++++||++|.|++++|+++++.++.+
T Consensus 277 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred hhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 5555555556789999999999999976999999999999999999999998764
No 39
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=4.6e-28 Score=188.45 Aligned_cols=153 Identities=25% Similarity=0.310 Sum_probs=118.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc--cccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED--YDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+...+.++..+.+...+.+++..+.+.+||++|++. +..+...++..+
T Consensus 14 ~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~--------------- 78 (175)
T 2nzj_A 14 GVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGG--------------- 78 (175)
T ss_dssp TSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSC---------------
T ss_pred CccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccC---------------
Confidence 799999999999988765544333344566778899999999999999987 344445555555
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+.
T Consensus 79 ---------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 79 ---------------------------------SAYVIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCT
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 9999999999999999998 8888887753 479999999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+. +.++.+++..++..++ .+++++||++|.|++++|+++.+.+...
T Consensus 125 ~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 125 RC------------REVSVEEGRACAVVFD-CKFIETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TT------------CCSCHHHHHHHHHHHT-SEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cc------------cccCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 64 4577888889999999 4999999999999999999999988653
No 40
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=1.8e-27 Score=186.19 Aligned_cols=154 Identities=31% Similarity=0.505 Sum_probs=134.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 22 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 85 (181)
T 2efe_B 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA---------------- 85 (181)
T ss_dssp TSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC----------------
Confidence 7999999999999999888888886655 45677888889999999999999888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... ++.|+++|+||+|+...
T Consensus 86 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 86 --------------------------------AAAIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 9999999999999999998 9999888775 57899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+....
T Consensus 133 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 133 ------------RKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCSSSCTTHHHHHHHHHHTCC---
T ss_pred ------------ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4578888999999999 48999999999999999999999886543
No 41
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=1.6e-27 Score=189.15 Aligned_cols=153 Identities=27% Similarity=0.507 Sum_probs=131.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 94 (191)
T 2a5j_A 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA---------------- 94 (191)
T ss_dssp TSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC----------------
Confidence 7999999999999999888888886655 45678889899999999999999988888888877
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 95 --------------------------------d~ii~v~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 95 --------------------------------AGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 9999999999999999998 8999888764 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.+++ +++++||++|.||+++|+++++.+.+.
T Consensus 142 ------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 142 ------------RDVKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 55788889999999995 899999999999999999999988753
No 42
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=189.86 Aligned_cols=155 Identities=27% Similarity=0.542 Sum_probs=137.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 26 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 89 (196)
T 3tkl_A 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA---------------- 89 (196)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC----------------
Confidence 7999999999999999888888886555 46778899999999999999999988888888777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 90 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 90 --------------------------------HGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8999988775 47899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.+..+++..+++.+++ +++++||++|.||+++|.++.+.+....+
T Consensus 137 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 137 ------------KVVDYTTAKEFADSLGI-PFLETSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-CEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred ------------cccCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 56888889999999994 99999999999999999999999876544
No 43
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-27 Score=193.32 Aligned_cols=155 Identities=28% Similarity=0.474 Sum_probs=129.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+. ..+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 23 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 86 (223)
T 3cpj_B 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA---------------- 86 (223)
T ss_dssp TSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC----------------
Confidence 79999999999999998888888876554 5678889889999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 87 --------------------------------d~vilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 87 --------------------------------VGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp --------------------------------CEEEEEEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred --------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 8999988775 47899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.++.+++..+++.++ .+++++||++|.||+++|+++++.+.....
T Consensus 134 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 134 ------------RAVPTEESKTFAQENQ-LLFTETSALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 5578888999999999 599999999999999999999999886443
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=4.5e-28 Score=189.17 Aligned_cols=154 Identities=25% Similarity=0.383 Sum_probs=132.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcC-eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDG-KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+...+.||++ +.+...+.+++ ..+.+.+||++|++.+..++..++..+
T Consensus 16 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~--------------- 80 (178)
T 2hxs_A 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGA--------------- 80 (178)
T ss_dssp TSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTC---------------
T ss_pred CCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhC---------------
Confidence 7999999999999998877888885 44456677776 678999999999999888888777777
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCC-EEEEEeCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTP-IILVGTKLD 154 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~p-iilv~nK~D 154 (228)
|++++|||++++.+|..+. .|+..+.... ...| ++||+||+|
T Consensus 81 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 81 ---------------------------------QGVLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 9999999999999999987 8988887753 2455 899999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+. +.++.+++..+++.+++ +++++||++|.||+++|+++.+.+....
T Consensus 127 l~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 127 LEHM------------RTIKPEKHLRFCQENGF-SSHFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp GGGG------------CSSCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred cccc------------cccCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9764 55788889999999994 8999999999999999999999987654
No 45
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=1.7e-27 Score=183.99 Aligned_cols=151 Identities=26% Similarity=0.512 Sum_probs=132.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 16 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~---------------- 79 (170)
T 1r2q_A 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGA---------------- 79 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCC----------------
Confidence 7999999999999999888888886655 45677888889999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... ++.|+++|+||+|+...
T Consensus 80 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 80 --------------------------------QAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 9999999999999999998 8988888764 57899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+.
T Consensus 127 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 127 ------------RAVDFQEAQSYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred ------------cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 4577888999999999 58999999999999999999998764
No 46
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=1.3e-27 Score=186.35 Aligned_cols=152 Identities=30% Similarity=0.545 Sum_probs=133.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 25 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 88 (179)
T 1z0f_A 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA---------------- 88 (179)
T ss_dssp TSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC----------------
Confidence 7999999999999999888888887555 45677888899999999999998877777677766
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 89 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 89 --------------------------------AGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 9999999999999999998 9998888765 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++++.+.+
T Consensus 136 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 136 ------------RDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 5578888999999999 499999999999999999999998864
No 47
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.95 E-value=8.5e-28 Score=188.61 Aligned_cols=152 Identities=29% Similarity=0.512 Sum_probs=135.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+...+.+|.++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 28 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 90 (187)
T 2a9k_A 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG----------------- 90 (187)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC-----------------
Confidence 799999999999999988899999888887888899999999999999988877776666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+..... +.|+++|+||+|+...
T Consensus 91 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 91 -------------------------------EGFLCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 88888887653 7999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +++++||+++.|++++|+++.+.+..
T Consensus 139 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 139 ------------RQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------CccCHHHHHHHHHHcCC-eEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 45788889999999995 89999999999999999999998864
No 48
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=3.7e-27 Score=186.56 Aligned_cols=152 Identities=30% Similarity=0.559 Sum_probs=135.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+. ..+.+++..+.+.+||++|++.+..++..++..+
T Consensus 32 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 95 (189)
T 2gf9_A 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA---------------- 95 (189)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC----------------
Confidence 79999999999999998888888876553 5667788889999999999999988888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 96 --------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 96 --------------------------------MGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8999988875 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.|++++|+++++.+.+
T Consensus 143 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 143 ------------RVVPAEDGRRLADDLGF-EFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ------------cCCCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778889999999994 99999999999999999999998754
No 49
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=4.4e-27 Score=188.54 Aligned_cols=151 Identities=29% Similarity=0.579 Sum_probs=135.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+. ..+.+++..+.+.+||++|++.+..++..++..+
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 81 (206)
T 2bcg_Y 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGS---------------- 81 (206)
T ss_dssp TSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCC----------------
Confidence 79999999999999998888898876554 5678899999999999999999999988888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... ...|++||+||+|+...
T Consensus 82 --------------------------------d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 82 --------------------------------HGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 9999999999999999998 8999988775 57899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+++..+++.++ .+++++||++|.||+++|.++.+.+.
T Consensus 129 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 129 ------------RVVEYDVAKEFADANK-MPFLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4578888999999999 48999999999999999999998775
No 50
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=8.3e-28 Score=184.96 Aligned_cols=151 Identities=31% Similarity=0.549 Sum_probs=133.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~----------------- 75 (167)
T 1kao_A 13 GVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG----------------- 75 (167)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC-----------------
Confidence 799999999999999988889998887778888899999999999999988877766666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 76 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 76 -------------------------------QGFILVYSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 9999999999999999998 8887777654 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.
T Consensus 124 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 124 ------------REVSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp ------------CCSCHHHHHHHHHHHTS-CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred ------------ccCCHHHHHHHHHHhCC-CEEEecCCCCcCHHHHHHHHHHHHh
Confidence 45778888999999994 8999999999999999999998764
No 51
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=4.6e-27 Score=181.73 Aligned_cols=151 Identities=25% Similarity=0.463 Sum_probs=133.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 16 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~---------------- 79 (170)
T 1z0j_A 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGS---------------- 79 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCC----------------
Confidence 7999999999999999888888887655 45677888889999999999998888887777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... +..|+++|+||+|+.+.
T Consensus 80 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 80 --------------------------------AAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 9999999999999999997 8999988774 57899999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+++..+++.++ .+++++||++|.|++++|+++.+.+.
T Consensus 127 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 127 ------------REVMERDAKDYADSIH-AIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 4577888999999999 59999999999999999999998875
No 52
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=3.2e-27 Score=184.16 Aligned_cols=153 Identities=30% Similarity=0.558 Sum_probs=129.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 80 (177)
T 1wms_A 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS---------------- 80 (177)
T ss_dssp TSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC----------------
Confidence 7999999999999999888888886555 56778899999999999999999888888888877
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~D 154 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|
T Consensus 81 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~D 127 (177)
T 1wms_A 81 --------------------------------DCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKID 127 (177)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCc
Confidence 9999999999999999997 8988887653 4689999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.. +.+..+++..+++..+..+++++||++|.|++++|+++++.+++.
T Consensus 128 l~~-------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 128 ISE-------------RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CSS-------------CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ccc-------------cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 974 457788889998855446999999999999999999999998753
No 53
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=6.1e-28 Score=192.32 Aligned_cols=152 Identities=29% Similarity=0.447 Sum_probs=133.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++. ..++..++..+
T Consensus 38 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~----------------- 99 (196)
T 2atv_A 38 GVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG----------------- 99 (196)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC-----------------
Confidence 799999999999999998999999888887788899999999999999987 44555555555
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 100 -------------------------------d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 100 -------------------------------EGFVLVYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 8888887653 47999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCC-CHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQK-GLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~-~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.++ .+++++||++|. ||+++|+++++.+.+.
T Consensus 148 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 148 ------------RQVSTEEGEKLATELA-CAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp ------------CCSCHHHHHHHHHHHT-SEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHhC-CeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 5588889999999999 499999999999 9999999999988753
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=2.1e-27 Score=183.59 Aligned_cols=152 Identities=28% Similarity=0.581 Sum_probs=127.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~---------------- 76 (170)
T 1g16_A 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGA---------------- 76 (170)
T ss_dssp TSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTE----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccC----------------
Confidence 7999999999999999888888887555 45677788889999999999999888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+..
T Consensus 77 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~- 122 (170)
T 1g16_A 77 --------------------------------MGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET- 122 (170)
T ss_dssp --------------------------------EEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT-
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCc-
Confidence 9999999999999999987 8998888775 5789999999999943
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+..+++..+++.+++ +++++||++|.|++++|.++.+.+.+.
T Consensus 123 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 123 ------------RVVTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ------------CccCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45777889999999994 899999999999999999999988653
No 55
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=2.8e-27 Score=186.07 Aligned_cols=153 Identities=27% Similarity=0.487 Sum_probs=135.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 20 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 83 (186)
T 2bme_A 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA---------------- 83 (186)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcC----------------
Confidence 7999999999999999888888886554 56678889889999999999999888888788877
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 84 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 84 --------------------------------AGALLVYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 9999999999999999998 8988887764 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++..++..+++.++ .+++++||++|.|++++|+++++.+...
T Consensus 131 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 131 ------------REVTFLEASRFAQENE-LMFLETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 4578888999999999 5999999999999999999999988753
No 56
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=2.5e-27 Score=183.01 Aligned_cols=154 Identities=27% Similarity=0.503 Sum_probs=133.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~---------------- 76 (170)
T 1ek0_A 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNA---------------- 76 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccC----------------
Confidence 7999999999999999888888886655 46677888899999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 77 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 77 --------------------------------QAALVVYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred --------------------------------cEEEEEEecCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 9999999999999999998 8998888765 57999999999999754
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. .+.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.
T Consensus 124 ~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 124 GG---------ERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp SC---------CCCSCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred cc---------ccCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 21 245778888999999994 8999999999999999999998764
No 57
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=4.8e-27 Score=185.74 Aligned_cols=152 Identities=32% Similarity=0.523 Sum_probs=126.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|.++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 93 (190)
T 3con_A 31 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 93 (190)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcC-----------------
Confidence 799999999999999988888888887877888899999999999999999888888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+..
T Consensus 94 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~- 140 (190)
T 3con_A 94 -------------------------------EGFLCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPT- 140 (190)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSC-
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCc-
Confidence 9999999999999999997 8988888764 3799999999999976
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.+.
T Consensus 141 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 141 ------------RTVDTKQAHELAKSYGI-PFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------ccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 24677888999999995 899999999999999999999988753
No 58
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.1e-27 Score=185.38 Aligned_cols=152 Identities=26% Similarity=0.441 Sum_probs=131.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+..++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~----------------- 75 (172)
T 2erx_A 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG----------------- 75 (172)
T ss_dssp TSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccC-----------------
Confidence 799999999999999988888988877777778888889999999999988776666666655
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLRD 157 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.++..+. .|+..+.+.. ++.|+++|+||+|+..
T Consensus 76 -------------------------------~~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 76 -------------------------------HAFILVYSITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 9999999999999999887 7877777653 4789999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. +.+...++..+++.++ .+++++||++|.|++++|+++.+.+..
T Consensus 124 ~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 124 S------------REVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp G------------CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred c------------cccCHHHHHHHHHHhC-CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 5 4577788889999999 489999999999999999999987654
No 59
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=2.2e-27 Score=185.45 Aligned_cols=155 Identities=29% Similarity=0.543 Sum_probs=120.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+...+.++++..+ ...+.++ +..+.+.+||++|++.+..++..++..+
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~--------------- 82 (182)
T 1ky3_A 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGA--------------- 82 (182)
T ss_dssp TSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTC---------------
T ss_pred CCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcC---------------
Confidence 7999999999999999888888885444 4556666 5678999999999999998888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKL 153 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~ 153 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+
T Consensus 83 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 83 ---------------------------------DCCVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp ---------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred ---------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 9999999999999999997 8988877653 478999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|+.... +.++.+++..+++..+..+++++||++|.|++++|+++.+.+++.
T Consensus 129 Dl~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 129 DAEESK-----------KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TSCGGG-----------CCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cccccc-----------ccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 996532 457788888998855446899999999999999999999988753
No 60
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=4.8e-27 Score=180.26 Aligned_cols=151 Identities=32% Similarity=0.535 Sum_probs=132.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+...+.++.++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~----------------- 75 (166)
T 2ce2_X 13 GVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 75 (166)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccC-----------------
Confidence 799999999999999988888988887777888899999999999999988777666666665
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+..... +.|+++|+||+|+...
T Consensus 76 -------------------------------~~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 76 -------------------------------EGFLCVFAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 9999999999999999997 89888887653 7999999999999862
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+..+++..+++.+++ +++++||++|.|++++|.++.+.+.+
T Consensus 124 -------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 124 -------------TVESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp -------------CSCHHHHHHHHHHHTC-CEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred -------------ccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 3667788899999994 89999999999999999999998754
No 61
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.5e-27 Score=187.44 Aligned_cols=153 Identities=24% Similarity=0.434 Sum_probs=134.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+. ..+.+++..+.+.+||++|++.+..++..++..+
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 96 (192)
T 2fg5_A 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS---------------- 96 (192)
T ss_dssp TSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC----------------
Confidence 79999999999999998888888876653 5567788889999999999999888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 97 --------------------------------d~iilV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 97 --------------------------------AAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp --------------------------------SEEEEEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999999999999999997 9999988876 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+...
T Consensus 144 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 144 ------------REVPLKDAKEYAESIG-AIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp ------------CCSCHHHHHHHHHTTT-CEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 4578888999999999 5899999999999999999999987643
No 62
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=5.9e-27 Score=187.25 Aligned_cols=152 Identities=26% Similarity=0.540 Sum_probs=134.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 81 (203)
T 1zbd_A 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGA---------------- 81 (203)
T ss_dssp TSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCC----------------
Confidence 7999999999999999888888886555 45677788899999999999999888888788777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 82 --------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 82 --------------------------------MGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 9999999999999999998 8999988876 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.||+++|+++.+.+..
T Consensus 129 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 129 ------------RVVSSERGRQLADHLGF-EFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHCCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55788889999999995 99999999999999999999988764
No 63
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=4.2e-27 Score=183.42 Aligned_cols=152 Identities=31% Similarity=0.509 Sum_probs=132.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeee-ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++. .+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 24 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~---------------- 87 (179)
T 2y8e_A 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS---------------- 87 (179)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCC----------------
Confidence 79999999999999998888888864 4456778899889999999999998888877777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 88 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 88 --------------------------------TVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 9999999999999999998 8988887654 47999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+..
T Consensus 135 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 135 ------------RQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp ------------CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred ------------CcCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 4577888999999999 599999999999999999999987654
No 64
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=8e-27 Score=184.61 Aligned_cols=153 Identities=27% Similarity=0.548 Sum_probs=134.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 25 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 88 (195)
T 1x3s_A 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA---------------- 88 (195)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC----------------
Confidence 7999999999999999888888886555 46678889999999999999999888887777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.++..+. .|+..+.... .+.|++||+||+|+..
T Consensus 89 --------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 89 --------------------------------QGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 9999999999999999998 8999888765 4689999999999954
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+..+++..+++.++ .+++++||+++.|++++|+++.+.+....
T Consensus 136 -------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 136 -------------REVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp -------------CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred -------------cccCHHHHHHHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 4577888999999999 48999999999999999999999987643
No 65
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=1.9e-27 Score=187.56 Aligned_cols=153 Identities=30% Similarity=0.504 Sum_probs=132.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc--eeEEEcCe---------EEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGK---------PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|||||||+++|+++.+...+.+|++..+. ..+.+++. .+.+.+||++|++.+..++..++..+
T Consensus 21 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~------ 94 (195)
T 3bc1_A 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDA------ 94 (195)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTC------
T ss_pred CCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCC------
Confidence 79999999999999998888888866554 44555655 78999999999998887777777777
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPII 147 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~pii 147 (228)
|++++|||++++.++..+. .|+..+.... .+.|++
T Consensus 95 ------------------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pii 131 (195)
T 3bc1_A 95 ------------------------------------------MGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIV 131 (195)
T ss_dssp ------------------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEE
T ss_pred ------------------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEE
Confidence 9999999999999999998 9999888765 479999
Q ss_pred EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 148 LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 148 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+|+||+|+... +.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.+.
T Consensus 132 lv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 132 LCGNKSDLEDQ------------RAVKEEEARELAEKYGI-PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp EEEECTTCGGG------------CCSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECcccccc------------cccCHHHHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999764 45778889999999995 999999999999999999999988754
No 66
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4e-28 Score=192.63 Aligned_cols=154 Identities=27% Similarity=0.533 Sum_probs=136.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 96 (191)
T 3dz8_A 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA---------------- 96 (191)
T ss_dssp TSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC----------------
T ss_pred CcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC----------------
Confidence 7999999999999999888888886555 45667788889999999999998888877777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|+.+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 97 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 97 --------------------------------MGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 9999999999999999998 8999998876 57999999999999765
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+..+++..+++.+++ +++++||++|.||+++|+++++.+.+..
T Consensus 144 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 144 ------------RVVPTEKGQLLAEQLGF-DFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred ------------cccCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 56888899999999995 9999999999999999999999887543
No 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=188.94 Aligned_cols=158 Identities=28% Similarity=0.428 Sum_probs=125.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 38 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 101 (199)
T 2p5s_A 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA---------------- 101 (199)
T ss_dssp TSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC----------------
T ss_pred CCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC----------------
Confidence 7999999999999999888888887655 46678899999999999999988877766666666
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 102 --------------------------------d~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~ 148 (199)
T 2p5s_A 102 --------------------------------DGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDT 148 (199)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHH
T ss_pred --------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8999888765 47999999999999743
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. ....+.+..+++..+++.+++ +++++||++|.||+++|.++++.+.+
T Consensus 149 ~~------~~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 149 AA------TEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HH------HTTCCCCCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred cc------cccccccCHHHHHHHHHHcCC-eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 11 011256888889999999995 99999999999999999999998864
No 68
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.6e-29 Score=202.75 Aligned_cols=165 Identities=95% Similarity=1.498 Sum_probs=142.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 40 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 102 (204)
T 3th5_A 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT----------------- 102 (204)
Confidence 799999999999999988899999888887788888889999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|+++|+||+|+.....
T Consensus 103 -------------------------------d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~ 151 (204)
T 3th5_A 103 -------------------------------DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
Confidence 9999999999999999986578888887777899999999999987544
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..+.......+.++.+++..+++.+++.+++++||++|.|++++|+++++.++
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 33333333345678888999999999668999999999999999999988653
No 69
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=188.62 Aligned_cols=153 Identities=28% Similarity=0.510 Sum_probs=124.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~---------------- 98 (200)
T 2o52_A 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA---------------- 98 (200)
T ss_dssp TSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC----------------
Confidence 7999999999999999888888886554 46677889889999999999999888888888877
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 99 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 99 --------------------------------AGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 9999999999999999998 8998887765 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++..++..+++..+ .+++++||++|.||+++|.++++.+...
T Consensus 146 ------------~~v~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 146 ------------REVTFLEASRFAQENE-LMFLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5577888999999999 5999999999999999999999988753
No 70
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=4.8e-27 Score=185.93 Aligned_cols=151 Identities=28% Similarity=0.486 Sum_probs=129.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccc-cCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYD-RLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+. .++..+++.+
T Consensus 30 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~--------------- 94 (189)
T 1z06_A 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV--------------- 94 (189)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC---------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC---------------
Confidence 7999999999999999888888886554 4667888988999999999998887 6666667666
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+.
T Consensus 95 ---------------------------------d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 95 ---------------------------------HAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp ---------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred ---------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999998 8998888764 579999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCC---CCHHHHHHHHHHHhc
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQ---KGLKTVFDEAIRAVL 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~---~~v~~lf~~l~~~i~ 213 (228)
+. +.++.+++..+++.+++ +++++||++| .||+++|.++++.+.
T Consensus 141 ~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 141 SA------------IQVPTDLAQKFADTHSM-PLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GG------------CCSCHHHHHHHHHHTTC-CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred cc------------ceeCHHHHHHHHHHcCC-EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 64 45788889999999995 8999999999 999999999988764
No 71
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=189.74 Aligned_cols=153 Identities=28% Similarity=0.502 Sum_probs=124.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 36 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~---------------- 99 (192)
T 2il1_A 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA---------------- 99 (192)
T ss_dssp TSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC----------------
T ss_pred CCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC----------------
Confidence 7999999999999999888888885444 56678889899999999999988877766666666
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 100 --------------------------------d~iilV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 100 --------------------------------KGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 9999999999999999997 8998888775 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++..+++++||++|.||+++|+++++.+.+
T Consensus 147 ------------~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 147 ------------REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp ------------CCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45778888899988633699999999999999999999998764
No 72
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=1.7e-27 Score=190.34 Aligned_cols=152 Identities=22% Similarity=0.304 Sum_probs=101.0
Q ss_pred CCChhhhHHhhhhC--CCCCCCCceee-eccceeEEEcCe--EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchh
Q psy8274 1 AVGKTCLLISYTTN--AFPGEYIPTVF-DNYSANVMVDGK--PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVK 75 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (228)
|||||||+++|+++ .+...+.+|++ +.+...+.+++. .+.+.+||++|++.+..++..++..+
T Consensus 30 ~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~------------ 97 (208)
T 2yc2_C 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV------------ 97 (208)
T ss_dssp -------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC------------
T ss_pred CCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC------------
Confidence 79999999999998 88888889986 555677788887 89999999999999888888888888
Q ss_pred hhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC----CCCEEEEEe
Q psy8274 76 YLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP----STPIILVGT 151 (228)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~----~~piilv~n 151 (228)
|++++|||++++.+|..+. .|+..+..... +.|++||+|
T Consensus 98 ------------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~n 140 (208)
T 2yc2_C 98 ------------------------------------YYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVAN 140 (208)
T ss_dssp ------------------------------------CEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred ------------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEE
Confidence 9999999999999999998 99999988764 789999999
Q ss_pred CCCCCC-chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccC-CCCHHHHHHHHHHHhcC
Q psy8274 152 KLDLRD-DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALT-QKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 152 K~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~-~~~v~~lf~~l~~~i~~ 214 (228)
|+|+.. . +.++.+++..+++.++ .+++++||++ |.|++++|+++++.+..
T Consensus 141 K~Dl~~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 141 KTDLPPQR------------HQVRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp CC-------------------CCCHHHHHHHHHHTT-CEEEECCC-------CHHHHHHHHHHHH
T ss_pred Ccccchhh------------ccCCHHHHHHHHHHcC-CEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 999986 4 4578889999999999 5999999999 99999999999998764
No 73
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=183.77 Aligned_cols=152 Identities=26% Similarity=0.476 Sum_probs=133.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 98 (193)
T 2oil_A 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA---------------- 98 (193)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC----------------
Confidence 7999999999999999888888886555 45677788889999999999998888877777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 99 --------------------------------d~vi~v~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 99 --------------------------------VGALLVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 9999999999999999988 8988887765 57899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.|++++|.++++.+.+
T Consensus 146 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 146 ------------REVPTEEARMFAENNGL-LFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45778889999999995 99999999999999999999998764
No 74
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=1.5e-26 Score=184.41 Aligned_cols=153 Identities=27% Similarity=0.379 Sum_probs=121.3
Q ss_pred CCChhhhHHhhhhC--CCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc-cccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED-YDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|++. .|...+.++..+.+...+.+++..+.+.+||++|++. +..+++.+++.+
T Consensus 16 ~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~-------------- 81 (192)
T 2cjw_A 16 GVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG-------------- 81 (192)
T ss_dssp TSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHC--------------
T ss_pred CCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccC--------------
Confidence 79999999999953 3454444443455567788899999999999999876 444556666666
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDL 155 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl 155 (228)
|++++|||+++++||..+. .|...+.... .+.|+++|+||+|+
T Consensus 82 ----------------------------------~~~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl 126 (192)
T 2cjw_A 82 ----------------------------------DAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDL 126 (192)
T ss_dssp ----------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred ----------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhh
Confidence 9999999999999999997 8887777643 47899999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
... +.+..+++..++..+++ +|+++||++|.||+++|+++++.+...
T Consensus 127 ~~~------------r~v~~~~~~~~a~~~~~-~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 127 VRX------------REVSVSEGRAXAVVFDX-KFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp GGG------------CCSCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hcc------------ccccHHHHHHHHHHhCC-ceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 754 56778888888888884 899999999999999999999988543
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=1.5e-27 Score=188.78 Aligned_cols=152 Identities=25% Similarity=0.290 Sum_probs=126.6
Q ss_pred CCChhhhHHhhhhCCCCCCC-----------Cceeeecc-ceeE-EEcCeEEeeeeeeCCCCcccccCCCCccccccchh
Q psy8274 1 AVGKTCLLISYTTNAFPGEY-----------IPTVFDNY-SANV-MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSM 67 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~-----------~~t~~~~~-~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~ 67 (228)
|||||||+ +++.+.+...+ .+|++..+ ...+ .+++..+.+.+|||+|++.+..++..+++.+
T Consensus 24 ~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---- 98 (198)
T 3t1o_A 24 LSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGV---- 98 (198)
T ss_dssp TSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTC----
T ss_pred CCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcC----
Confidence 79999999 56666776553 45665444 3444 6678889999999999999998888888888
Q ss_pred HHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC------ChhhHHHHHHhhHHHHhhhC
Q psy8274 68 AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV------NPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt------~~~s~~~~~~~~~~~l~~~~ 141 (228)
|++|+|||++ +.++|..+. .|+..+....
T Consensus 99 --------------------------------------------d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~ 133 (198)
T 3t1o_A 99 --------------------------------------------DGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTL 133 (198)
T ss_dssp --------------------------------------------CEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCT
T ss_pred --------------------------------------------CEEEEEEECCcchhhHhHHHHHHHH-HHHHhhcccc
Confidence 9999999999 667888887 8888886555
Q ss_pred CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 142 PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.|++||+||+|+.+. ++.+++..+++.+++.+++++||++|.||+++|+++++.+....
T Consensus 134 ~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPDA--------------LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp TSSCEEEEEECTTSTTC--------------CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEchhcccc--------------cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 78999999999999763 77788999999999659999999999999999999999887543
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=2.7e-26 Score=183.56 Aligned_cols=152 Identities=26% Similarity=0.509 Sum_probs=130.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++.. +...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 81 (207)
T 1vg8_A 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGA---------------- 81 (207)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCC----------------
Confidence 799999999999999988888888544 456677788889999999999999998888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~D 154 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|
T Consensus 82 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (207)
T 1vg8_A 82 --------------------------------DCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKID 128 (207)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTT
T ss_pred --------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCC
Confidence 9999999999999999997 8888877653 3689999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.. +.+..+++..+++.....+++++||++|.|++++|+++++.+..
T Consensus 129 l~~-------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 129 LEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp SSC-------------CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred Ccc-------------cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 984 34677788888884433689999999999999999999988753
No 77
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=4.4e-26 Score=180.84 Aligned_cols=150 Identities=23% Similarity=0.412 Sum_probs=127.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeE-------------------------------------Eeee
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKP-------------------------------------INLG 42 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~-------------------------------------~~~~ 42 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++.. +.+.
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (208)
T 3clv_A 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFD 96 (208)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCEEEEE
T ss_pred CCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccceeEEE
Confidence 7999999999999999888888886544 3455656554 8899
Q ss_pred eeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC
Q psy8274 43 LWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122 (228)
Q Consensus 43 i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~ 122 (228)
+||++|++.+..++..++..+ |++++|||+++
T Consensus 97 i~Dt~G~~~~~~~~~~~~~~~------------------------------------------------d~~i~v~D~~~ 128 (208)
T 3clv_A 97 IWDTAGQERYASIVPLYYRGA------------------------------------------------TCAIVVFDISN 128 (208)
T ss_dssp EEECTTGGGCTTTHHHHHTTC------------------------------------------------SEEEEEEETTC
T ss_pred EEECCCcHHHHHHHHHHhcCC------------------------------------------------CEEEEEEECCC
Confidence 999999998888777777777 99999999999
Q ss_pred hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHH
Q psy8274 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLK 202 (228)
Q Consensus 123 ~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~ 202 (228)
+.++..+. .|+..+..... .|+++|+||+|+ .. +.+..+++..+++.+++ +++++||++|.|++
T Consensus 129 ~~s~~~~~-~~~~~i~~~~~-~piilv~NK~D~-~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 192 (208)
T 3clv_A 129 SNTLDRAK-TWVNQLKISSN-YIIILVANKIDK-NK------------FQVDILEVQKYAQDNNL-LFIQTSAKTGTNIK 192 (208)
T ss_dssp HHHHHHHH-HHHHHHHHHSC-CEEEEEEECTTC-C-------------CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHH
T ss_pred HHHHHHHH-HHHHHHHhhCC-CcEEEEEECCCc-cc------------ccCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Confidence 99999988 89998887655 999999999993 32 55788899999999995 99999999999999
Q ss_pred HHHHHHHHHhcC
Q psy8274 203 TVFDEAIRAVLC 214 (228)
Q Consensus 203 ~lf~~l~~~i~~ 214 (228)
++|+++.+.+.+
T Consensus 193 ~l~~~l~~~~~~ 204 (208)
T 3clv_A 193 NIFYMLAEEIYK 204 (208)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 78
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=5.1e-26 Score=182.75 Aligned_cols=151 Identities=28% Similarity=0.586 Sum_probs=133.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 30 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 93 (213)
T 3cph_A 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA---------------- 93 (213)
T ss_dssp TSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC----------------
Confidence 7999999999999999888888886555 45678889889999999999999988888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+..... +.|++||+||+|+..
T Consensus 94 --------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~- 139 (213)
T 3cph_A 94 --------------------------------MGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET- 139 (213)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSS-
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc-
Confidence 9999999999999999988 89988887754 689999999999953
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.||+++|.++.+.+..
T Consensus 140 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 140 ------------RVVTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-CEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45777888999999995 89999999999999999999988764
No 79
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=9.7e-27 Score=188.00 Aligned_cols=152 Identities=31% Similarity=0.545 Sum_probs=131.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCe----------EEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK----------PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++. .+.+.+||++|++.+..++..++..+
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~------ 108 (217)
T 2f7s_A 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDA------ 108 (217)
T ss_dssp TSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTC------
T ss_pred CCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCC------
Confidence 7999999999999999888888886655 456667766 78999999999988877777777777
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPII 147 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~pii 147 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++
T Consensus 109 ------------------------------------------d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~pii 145 (217)
T 2f7s_A 109 ------------------------------------------MGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIV 145 (217)
T ss_dssp ------------------------------------------CEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEE
T ss_pred ------------------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEE
Confidence 9999999999999999998 8988887665 579999
Q ss_pred EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 148 LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 148 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
||+||+|+... +.++.+++..+++.+++ +++++||++|.||+++|+++.+.+..
T Consensus 146 lV~NK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 146 LIGNKADLPDQ------------REVNERQARELADKYGI-PYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEEECTTCGGG------------CCSCHHHHHHHHHHTTC-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEECCccccc------------cccCHHHHHHHHHHCCC-cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999764 45778889999999994 89999999999999999999998865
No 80
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=190.86 Aligned_cols=152 Identities=28% Similarity=0.563 Sum_probs=125.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 43 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 106 (199)
T 3l0i_B 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA---------------- 106 (199)
T ss_dssp TSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC----------------
Confidence 7999999999999999888888886555 46678899999999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 107 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 107 --------------------------------HGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp --------------------------------SEEEECC-CCCSHHHHHHH-HHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 9999999999999999998 8999988775 47899999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.||+++|.++.+.+..
T Consensus 154 ------------~~v~~~~~~~~~~~~~-~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 154 ------------KVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp ------------CCCCSCC-CHHHHTTT-CCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred ------------ccCCHHHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567777888999999 489999999999999999999887764
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=1.3e-26 Score=184.11 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=117.8
Q ss_pred CCChhhhHHhhhhCCCCC-CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+.. .+.+|++..+. .+++..+.+.+|||+|++.+..++..+++.+
T Consensus 27 ~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 87 (199)
T 4bas_A 27 NSGKTTIINQVKPAQSSSKHITATVGYNVE---TFEKGRVAFTVFDMGGAKKFRGLWETYYDNI---------------- 87 (199)
T ss_dssp TSCHHHHHHHHSCCC----CCCCCSSEEEE---EEEETTEEEEEEEECCSGGGGGGGGGGCTTC----------------
T ss_pred CCCHHHHHHHHhcCCCcccccccccceeEE---EEEeCCEEEEEEECCCCHhHHHHHHHHHhcC----------------
Confidence 799999999999999987 78888874333 2345568899999999999999998888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---------CCCCEEEEE
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---------PSTPIILVG 150 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---------~~~piilv~ 150 (228)
|++|+|||++++++|..+. .|+..+.... .+.|++||+
T Consensus 88 --------------------------------d~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~ 134 (199)
T 4bas_A 88 --------------------------------DAVIFVVDSSDHLRLCVVK-SEIQAMLKHEDIRRELPGGGRVPFLFFA 134 (199)
T ss_dssp --------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTSHHHHSBCTTSCBCCEEEEE
T ss_pred --------------------------------CEEEEEEECCcHHHHHHHH-HHHHHHHhChhhhhcccccCCCCEEEEE
Confidence 9999999999999999998 7776665431 278999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHH-HHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGL-SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
||+|+.......+ +...... .+++..+ .+++++||++|.||+++|+++++.+.....+
T Consensus 135 NK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 135 NKMDAAGAKTAAE---------LVEILDLTTLMGDHP-FVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp ECTTSTTCCCHHH---------HHHHHTHHHHHTTSC-EEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred ECcCCCCCCCHHH---------HHHHhcchhhccCCe-eEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 9999986522111 1111111 1224456 5899999999999999999999988765443
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.94 E-value=9.8e-27 Score=188.77 Aligned_cols=153 Identities=25% Similarity=0.469 Sum_probs=132.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 25 ~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 88 (221)
T 3gj0_A 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA---------------- 88 (221)
T ss_dssp TSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC----------------
Confidence 7999999999998888878888885444 55677888899999999999999998888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++.+|..+. .|+..+....++.|++||+||+|+.+..
T Consensus 89 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 89 --------------------------------QCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCS
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCcccccc
Confidence 9999999999999999998 9999999988889999999999997641
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+. .++..+++.++ .+++++||++|.||+++|.++.+.+.....
T Consensus 136 -------------~~-~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 136 -------------VK-AKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp -------------SC-GGGCCHHHHHT-CEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred -------------cc-HHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 22 24567788888 499999999999999999999999876543
No 83
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.93 E-value=3.7e-26 Score=184.70 Aligned_cols=155 Identities=23% Similarity=0.345 Sum_probs=129.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEE-cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+...+.+|.+..+. ..... ++..+.+.+||++|++.+..++..++..+
T Consensus 21 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~--------------- 85 (218)
T 4djt_A 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA--------------- 85 (218)
T ss_dssp TSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC---------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC---------------
Confidence 79999999999999988777787755443 33333 34458899999999999988888888777
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.++..+. .|+..+..... +.|++||+||+|+.+
T Consensus 86 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 86 ---------------------------------SGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred ---------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 9999999999999999998 99999887754 589999999999986
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
. +.+..+++..+++.++ .+++++||++|.|++++|.++.+.+.....
T Consensus 132 ~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 132 R------------QKISKKLVMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp ---------------CCHHHHHHHTTTCC-CEEEEEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred c------------cccCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 4 4577888888888888 489999999999999999999999887544
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.93 E-value=1.3e-25 Score=179.66 Aligned_cols=145 Identities=17% Similarity=0.279 Sum_probs=110.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+. .+.||++.. ...+.+++ +.+.+|||+|++.++.++..+++.+
T Consensus 35 ~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 93 (198)
T 1f6b_A 35 NAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAI----------------- 93 (198)
T ss_dssp TSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGC-----------------
T ss_pred CCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcC-----------------
Confidence 79999999999988874 567777654 35566777 7899999999999999988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.+. ..+.|+++|+||+|+.+.
T Consensus 94 -------------------------------d~~i~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 141 (198)
T 1f6b_A 94 -------------------------------NGIVFLVDCADHERLLESK-EELDSLMTDETIANVPILILGNKIDRPEA 141 (198)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTSCEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEEECCCcccc
Confidence 9999999999999999998 787777654 257999999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh----------------CCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI----------------GAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
++.+++..++... ...+++++||++|.||+++|+++.+.+
T Consensus 142 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 142 --------------ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp --------------CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred --------------CCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4455555554421 225899999999999999999998653
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.1e-25 Score=176.10 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=113.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+. .+.||++.. ...+.+++ +.+.+||++|++.+..++..++..+
T Consensus 26 ~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 84 (187)
T 1zj6_A 26 NAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT----------------- 84 (187)
T ss_dssp TSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCC-----------------
Confidence 79999999999988887 667777632 34555555 7899999999999888887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 85 -------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 85 -------------------------------EFVIVVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp -------------------------------CEEEEEEETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 9999999999999999998 788777665 357999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHH-----HHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMA-----KEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVP 220 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~ 220 (228)
...++..... +..+ .+++++||++|.|++++|+++++.+....+..+
T Consensus 133 --------------~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 133 --------------MTVAEISQFLKLTSIKDHQ-WHIQACCALTGEGLCQGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp --------------CCHHHHHHHHTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHHHHCC------
T ss_pred --------------CCHHHHHHHhChhhhcCCC-cEEEEccCCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 2222332222 1235 489999999999999999999999887666544
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.93 E-value=6.1e-25 Score=174.57 Aligned_cols=143 Identities=19% Similarity=0.302 Sum_probs=115.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+. .+.+|++.. ...+.+++ +.+.+||++|++.+..++..+++.+
T Consensus 33 ~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 91 (190)
T 1m2o_B 33 NAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEV----------------- 91 (190)
T ss_dssp TSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC-----------------
Confidence 79999999999998875 567777553 45566676 7889999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.+. ..+.|+++|+||+|+...
T Consensus 92 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (190)
T 1m2o_B 92 -------------------------------NGIVFLVDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNA 139 (190)
T ss_dssp -------------------------------CEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHcchhhcCCCEEEEEECCCCcCC
Confidence 9999999999999999998 787777653 257999999999999763
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH------------HhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK------------EIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~------------~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
++.+++..+.. ..+ .+++++||++|.||+++|+++.+.
T Consensus 140 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 140 --------------VSEAELRSALGLLNTTGSQRIEGQRP-VEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp --------------CCHHHHHHHTTCSSCCC---CCSSCC-EEEEECBTTTTBSHHHHHHHHHTT
T ss_pred --------------CCHHHHHHHhCCccccccccccccce-EEEEEeECCcCCCHHHHHHHHHhh
Confidence 33333333322 133 589999999999999999999764
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.92 E-value=7e-25 Score=173.54 Aligned_cols=147 Identities=16% Similarity=0.215 Sum_probs=116.9
Q ss_pred CCChhhhHHhhhhCC-CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++. +...+.+|++. ....+.+++ +.+.+||++|++.+..++..++..+
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 91 (190)
T 2h57_A 31 NSGKTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG---------------- 91 (190)
T ss_dssp TSSHHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC----------------
Confidence 799999999999887 66677787763 334455554 7899999999999988888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDL 155 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl 155 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+
T Consensus 92 --------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl 138 (190)
T 2h57_A 92 --------------------------------QAIIFVIDSSDRLRMVVAK-EELDTLLNHPDIKHRRIPILFFANKMDL 138 (190)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHSTTTTTSCCCEEEEEECTTS
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhChhhccCCCeEEEEEeCcCc
Confidence 9999999999999999998 7777766543 47899999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHH-----HhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAK-----EIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+. .+.++...+.. ..+ .+++++||++|.||+++|+++.+.+.+
T Consensus 139 ~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 139 RDA--------------VTSVKVSQLLCLENIKDKP-WHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTC--------------CCHHHHHHHHTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ccC--------------CCHHHHHHHhChhhccCCc-eEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 764 33344444442 124 589999999999999999999988754
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.92 E-value=2.7e-25 Score=175.94 Aligned_cols=153 Identities=16% Similarity=0.240 Sum_probs=114.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+.. ++...+.+.+||++|++.+..++..++..+
T Consensus 32 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 91 (188)
T 1zd9_A 32 YSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQPRFRSMWERYCRGV----------------- 91 (188)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCSHHHHTTHHHHHTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCccCCCCceeEEE---EEeCCEEEEEEECCCCHhHHHHHHHHHccC-----------------
Confidence 799999999999999988888888766542 333457899999999998888777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|++||+||+|+...
T Consensus 92 -------------------------------d~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 92 -------------------------------SAIVYMVDAADQEKIEASK-NELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 9999999999999999998 777666543 257999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+..+... .....++...+ .+++++||++|.||+++|+++.+.+...
T Consensus 140 ~~~~~~~~---------~~~~~~~~~~~-~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 140 LDEKELIE---------KMNLSAIQDRE-ICCYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp CCHHHHHH---------HTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred CCHHHHHH---------HhChhhhccCC-eeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 21100000 00000111223 5799999999999999999999987654
No 89
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.92 E-value=1.1e-25 Score=173.35 Aligned_cols=151 Identities=21% Similarity=0.221 Sum_probs=111.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|. .+.||++.. ... ++...+.+.+||++|++.+..++..++.++
T Consensus 10 ~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 68 (164)
T 1r8s_A 10 AAGKTTILYKLKLGEIV-TTIPTIGFN-VET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNT----------------- 68 (164)
T ss_dssp TSSHHHHHHHHHHHCSS-CCCCCSSCC-EEE--EECSSCEEEEEECCCCGGGHHHHHHHTTTC-----------------
T ss_pred CCCHHHHHHHHHcCCcC-cccCcCcee-EEE--EEECCEEEEEEEcCCChhhHHHHHHHhccC-----------------
Confidence 79999999999998886 456777622 222 333457899999999998887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 69 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 69 -------------------------------QGLIFVVDSNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 9999999999999999988 777776553 257999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
....+ +....+...++..+ .+++++||++|.|++++|+++.+.+.+
T Consensus 117 ~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 117 MNAAE---------ITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CCHHH---------HHHHTTGGGCSSCC-EEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CCHHH---------HHHHhCcccccCcc-EEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 21000 11011111112234 479999999999999999999998764
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.92 E-value=6.9e-25 Score=174.85 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=117.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeE--EE-cCeEEeeeeeeCCCCcccccCC---CCccccccchhHHhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANV--MV-DGKPINLGLWDTAGQEDYDRLR---PLSYPQTGLSMAKEIGA 73 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~--~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~~~~~~~~~~~~~~ 73 (228)
|||||||++++.+ .+... ++++..+ ...+ .+ ++..+.+.+||++|++.+.... ..+++++
T Consensus 30 ~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~---------- 96 (196)
T 3llu_A 30 RSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT---------- 96 (196)
T ss_dssp TSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC----------
T ss_pred CCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC----------
Confidence 7999999997665 44433 4443322 2222 33 3677899999999999987665 6777777
Q ss_pred hhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh--hhHHHHHHhhHHHHhhhCCCCCEEEEEe
Q psy8274 74 VKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP--ASFENVRAKWYPEVRHHCPSTPIILVGT 151 (228)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~--~s~~~~~~~~~~~l~~~~~~~piilv~n 151 (228)
|++|+|||++++ +++..+. .|+..+....++.|++||||
T Consensus 97 --------------------------------------~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~n 137 (196)
T 3llu_A 97 --------------------------------------GALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIH 137 (196)
T ss_dssp --------------------------------------SEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEE
T ss_pred --------------------------------------CEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEe
Confidence 999999999997 6777776 77777766677899999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHH----HhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAK----EIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
|+|+.......+. .+.+...++..+++ .++ .+|+++||++ .||+++|..+++.++
T Consensus 138 K~Dl~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 138 KVDGLSDDHKIET-----QRDIHQRANDDLADAGLEKLH-LSFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp CGGGSCHHHHHHH-----HHHHHHHHHHHHHHTTCTTSC-EEEEEECTTS-THHHHHHHHHHHHTC
T ss_pred ccccCchhhhhHH-----HhHHHHHHHHHHHHhhhhcCC-cceEEEEech-hhHHHHHHHHHHHhC
Confidence 9999874321111 14577777888888 667 5899999999 999999999998764
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.92 E-value=5.9e-25 Score=170.15 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=115.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+. .+.||++.. ...+.++ .+.+.+||++|++.+..++..++..+
T Consensus 17 ~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~----------------- 75 (171)
T 1upt_A 17 GAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNT----------------- 75 (171)
T ss_dssp TSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccC-----------------
Confidence 79999999999998885 466776532 2344555 47889999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 76 -------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 76 -------------------------------DAVIYVVDSCDRDRIGISK-SELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp -------------------------------SEEEEEEETTCCTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 9999999999999999987 6666655432 57999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+..+ +....+..+++..+ .+++++||++|.|++++|+++.+.+.++
T Consensus 124 ~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 124 MTSSE---------MANSLGLPALKDRK-WQIFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp CCHHH---------HHHHHTGGGCTTSC-EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCHHH---------HHHHhCchhccCCc-eEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 21100 11111112223345 4899999999999999999999988754
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.92 E-value=2.3e-24 Score=169.65 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=115.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++. ...+.||++.. ...+.+++ +.+.+||++|++.+..++..++..+
T Consensus 28 ~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~----------------- 86 (186)
T 1ksh_A 28 NAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFEST----------------- 86 (186)
T ss_dssp TSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCC-----------------
Confidence 799999999999888 66778887633 33445554 7889999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+... ..+.|+++|+||+|+...
T Consensus 87 -------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 87 -------------------------------DGLIWVVDSADRQRMQDCQ-RELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 9999999999999999988 777666554 257999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHH-----HHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMA-----KEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.. .++..... +..+ .+++++||++|.|++++|+++.+.+.+.
T Consensus 135 ~~--------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 135 LS--------------CNAIQEALELDSIRSHH-WRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CC--------------HHHHHHHTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CC--------------HHHHHHHhChhhccCCc-eEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 21 12222111 1234 5899999999999999999999988653
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.92 E-value=1e-24 Score=171.50 Aligned_cols=143 Identities=19% Similarity=0.289 Sum_probs=112.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+ ..+.+|++..+ ..+.+++ +.+.+||++|++.+..++..++..+
T Consensus 31 ~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 89 (181)
T 2h17_A 31 NAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT----------------- 89 (181)
T ss_dssp TSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC-----------------
T ss_pred CCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC-----------------
Confidence 7999999999999988 56667776433 4455555 7899999999999998888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+...
T Consensus 90 -------------------------------d~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 90 -------------------------------EFVIVVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp -------------------------------CEEEEEEETTCTTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 9999999999999999998 777666654 357999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHH-----HHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMA-----KEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. ..++..... +..+ .+++++||++|.||+++|+++++.
T Consensus 138 ~--------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 138 M--------------TVAEISQFLKLTSIKDHQ-WHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp C--------------CHHHHHHHTTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHTC
T ss_pred C--------------CHHHHHHHhCcccccCCc-eEEEEccCCCCcCHHHHHHHHHhh
Confidence 1 122222221 2234 489999999999999999999764
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.92 E-value=1.2e-25 Score=177.64 Aligned_cols=159 Identities=23% Similarity=0.327 Sum_probs=113.8
Q ss_pred CCChhhhHHhhhhC--CCCCCCCceeeecc-ceeEEE---cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcch
Q psy8274 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNY-SANVMV---DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAV 74 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (228)
|||||||+++|++. .+.+.+.+|++..+ ...+.+ ++..+.+.+||++|++.+..+++.++.++
T Consensus 12 gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------- 80 (184)
T 2zej_A 12 GSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR----------- 80 (184)
T ss_dssp TSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS-----------
T ss_pred CCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC-----------
Confidence 79999999999984 67777888886544 333333 34578899999999999888887777776
Q ss_pred hhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh-hhHHHHHHhhHHHHhhhCCCCCEEEEEeCC
Q psy8274 75 KYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP-ASFENVRAKWYPEVRHHCPSTPIILVGTKL 153 (228)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~-~s~~~~~~~~~~~l~~~~~~~piilv~nK~ 153 (228)
+++++|||++++ .+|..+. .|+..+....++.|++|||||+
T Consensus 81 -------------------------------------~~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~ 122 (184)
T 2zej_A 81 -------------------------------------ALYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHL 122 (184)
T ss_dssp -------------------------------------EEEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECG
T ss_pred -------------------------------------cEEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECC
Confidence 999999999997 5898887 9999888776789999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc---eEEEecccCCC-CHHHHHHHHHHHhcCCCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV---KYLECSALTQK-GLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~evSa~~~~-~v~~lf~~l~~~i~~~~~ 217 (228)
|+.+.....+ +..+.+..+++.+++. +++++||++|. +++++++.+.+.+...+.
T Consensus 123 Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 123 DVSDEKQRKA---------CMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp GGCCHHHHHH---------HHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred CcccchhhHH---------HHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence 9986532111 1134456677677753 39999999997 999999999998876543
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.91 E-value=1.1e-24 Score=171.75 Aligned_cols=147 Identities=21% Similarity=0.290 Sum_probs=109.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+ ..+.||++.. ...+.+++ +.+.+||++|++.+..++..++..+
T Consensus 26 ~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 84 (181)
T 1fzq_A 26 NAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENT----------------- 84 (181)
T ss_dssp TSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTC-----------------
T ss_pred CCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCC-----------------
Confidence 7999999999998865 3456666532 33455554 7889999999998887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 85 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 85 -------------------------------DILIYVIDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 9999999999999999987 777665443 257899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHH-----HHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSM-----AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.. .++.... +...+ .+++++||++|.||+++|+++++.+.+.
T Consensus 133 ~~--------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 133 AP--------------ASEIAEGLNLHTIRDRV-WQIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp CC--------------HHHHHHHTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred CC--------------HHHHHHHhCchhccCCc-eEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 21 1111111 11224 4799999999999999999999987643
No 96
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=180.72 Aligned_cols=170 Identities=19% Similarity=0.265 Sum_probs=114.5
Q ss_pred CCChhhhHHhhhh---CCCCCCCCcee-eeccc-eeEE--------------EcCeEEeeeeee----------------
Q psy8274 1 AVGKTCLLISYTT---NAFPGEYIPTV-FDNYS-ANVM--------------VDGKPINLGLWD---------------- 45 (228)
Q Consensus 1 gvGKTsli~~~~~---~~~~~~~~~t~-~~~~~-~~~~--------------~~~~~~~~~i~D---------------- 45 (228)
|||||||+++|++ +.|...+.+|+ +..+. +.+. +++..+.+++||
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~ 117 (255)
T 3c5h_A 38 GIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRST 117 (255)
T ss_dssp CCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGG
T ss_pred CcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEcccccccccccccccc
Confidence 7999999999998 67777888886 44332 2222 567889999999
Q ss_pred -------CCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEE
Q psy8274 46 -------TAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118 (228)
Q Consensus 46 -------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 118 (228)
++|++.+..++..++... .+.+++..|.....+ ....++|++|+||
T Consensus 118 ~~~~~~~~~g~e~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~--------~~~~~ad~vilV~ 170 (255)
T 3c5h_A 118 ALQPYIKRAAATKLASAEKLMYFCT-------------------DQLGLEQDFEQKQMP--------DGKLLVDGFLLGI 170 (255)
T ss_dssp GCCCHHHHHTCSEEECTTCBCCCCG-------------------GGTTCGGGSCCCBCG--------GGEEECCEEEEEE
T ss_pred ccccccccchhhhhhhhhhhhhhcc-------------------ccccccccccccccc--------cccccCCEEEEEE
Confidence 667777777777666510 111111110000000 0001239999999
Q ss_pred ecCCh--hhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-CCceEEEe
Q psy8274 119 SLVNP--ASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-GAVKYLEC 193 (228)
Q Consensus 119 Dvt~~--~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~ev 193 (228)
|++++ +||..+. .|+..+... ..++|++||+||+|+.... .+ +++..+++.. + .+++++
T Consensus 171 D~t~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~------------~v--~~~~~~~~~~~~-~~~~e~ 234 (255)
T 3c5h_A 171 DVSRGMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDEGVER------------YI--RDAHTFALSKKN-LQVVET 234 (255)
T ss_dssp ECBC----CHHHHH-HHHHHHHHHHHHTTCCEEEEEECGGGBCHH------------HH--HHHHHHHHTSSS-CCEEEC
T ss_pred ECCCCchhhHHHHH-HHHHHHHHHhccCCCCEEEEEEcccccccH------------HH--HHHHHHHHhcCC-CeEEEE
Confidence 99998 9999998 899888765 2579999999999997642 23 4677777764 6 589999
Q ss_pred cccCCCCHHHHHHHHHHHhc
Q psy8274 194 SALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 194 Sa~~~~~v~~lf~~l~~~i~ 213 (228)
||++|.||+++|+++++.+.
T Consensus 235 SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 235 SARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhc
Confidence 99999999999999998764
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.91 E-value=5.2e-25 Score=175.23 Aligned_cols=151 Identities=18% Similarity=0.178 Sum_probs=106.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+. .+.||++.. ...+..+ .+.+.+||++|++.+..++..++..+
T Consensus 39 ~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 97 (192)
T 2b6h_A 39 AAGKTTILYKLKLGEIV-TTIPTIGFN-VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNT----------------- 97 (192)
T ss_dssp TSSHHHHHHHHCSSCCE-EEEEETTEE-EEEEEET--TEEEEEEECC-----CTTHHHHHHTC-----------------
T ss_pred CCCHHHHHHHHHhCCcc-ccCCcCcee-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccC-----------------
Confidence 79999999999998886 456666522 2233433 47899999999998888777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 98 -------------------------------d~iilv~D~~~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 98 -------------------------------QGLIFVVDSNDRERVQESA-DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -------------------------------CEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 9999999999999999998 7777765532 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+..+ +....+..+++..+ .+++++||++|.||+++|+++++.+.+
T Consensus 146 ~~~~~---------i~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 146 MPVSE---------LTDKLGLQHLRSRT-WYVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp CCHHH---------HHHHTTGGGCSSCC-EEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred CCHHH---------HHHHhCcccccCCc-eEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 21000 11011111111233 479999999999999999999998754
No 98
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.91 E-value=2.3e-23 Score=166.38 Aligned_cols=152 Identities=30% Similarity=0.524 Sum_probs=128.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+...+.||++..+ ...+.++|..+.+.+||++|++.+..++..++..+
T Consensus 15 g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~---------------- 78 (199)
T 2f9l_A 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGA---------------- 78 (199)
T ss_dssp TSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcC----------------
Confidence 7999999999999999888888885444 56788899999999999999998887777777776
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++..+|..+. .|+..+.... ...|+++|+||+|+.+.
T Consensus 79 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 79 --------------------------------VGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 9999999999999999887 8888777654 46899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..++...++ .++++||+++.|++++|+++.+.+..
T Consensus 126 ------------~~~~~~~a~~l~~~~~~-~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 126 ------------RAVPTDEARAFAEKNNL-SFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------cCcCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45677788999999994 89999999999999999999988754
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.91 E-value=2.8e-24 Score=169.79 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=114.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+. .+.||++.. ...+..+ .+.+.+|||+|++.+..++..++..+
T Consensus 32 ~~GKssli~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~----------------- 90 (189)
T 2x77_A 32 NAGKTSILYRLHLGDVV-TTVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDT----------------- 90 (189)
T ss_dssp TSSHHHHHHHTCCSCCE-EECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCC-CcCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcC-----------------
Confidence 79999999999988875 356666522 2344444 37889999999999999988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 91 -------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 91 -------------------------------DAVIYVVDSTDRDRMGVAK-HELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp -------------------------------CEEEEEEETTCCTTHHHHH-HHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 9999999999999999987 6766665442 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+..+ +....+...++..+ .+++++||++|.|++++|+++.+.+.+.
T Consensus 139 ~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 139 ASEAE---------IAEQLGVSSIMNRT-WTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCHHH---------HHHHTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred CCHHH---------HHHHhChhhccCCc-eEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 21100 11111111122334 4799999999999999999999988654
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=6.2e-24 Score=166.46 Aligned_cols=146 Identities=15% Similarity=0.174 Sum_probs=110.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+ ..+.+|++.. ...+.+++ +.+.+||++|++.+..++..++..+
T Consensus 28 ~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 86 (183)
T 1moz_A 28 GAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADT----------------- 86 (183)
T ss_dssp TSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTE-----------------
T ss_pred CCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccC-----------------
Confidence 7999999999998877 4666776532 33445554 7889999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+... ..+.|+++|+||+|+...
T Consensus 87 -------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 87 -------------------------------AAVIFVVDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp -------------------------------EEEEEEEETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 9999999999999999998 777777665 357999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH-----HhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK-----EIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ..++...... ..+ .+++++||++|.|++++|+++.+.+.+
T Consensus 135 ~--------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 135 L--------------SASEVSKELNLVELKDRS-WSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp C--------------CHHHHHHHTTTTTCCSSC-EEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred C--------------CHHHHHHHhCcccccCCc-eEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 1 2222222211 123 479999999999999999999998753
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.90 E-value=6.4e-23 Score=163.08 Aligned_cols=151 Identities=30% Similarity=0.525 Sum_probs=130.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 39 g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~---------------- 102 (191)
T 1oix_A 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA---------------- 102 (191)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC----------------
Confidence 7999999999999999888889986555 57788899999999999999998888877777776
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++..+|..+. .|+..+.... ...|+++|+||+|+.+.
T Consensus 103 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 103 --------------------------------VGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 9999999999999999887 7888776654 46899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+...++..++...++ .++++||+++.|++++|+.+.+.++
T Consensus 150 ------------~~~~~~~a~~l~~~~~~-~~ld~Sald~~~v~~l~~~l~~~i~ 191 (191)
T 1oix_A 150 ------------RAVPTDEARAFAEKNGL-SFIETSALDSTNVEAAFQTILTEIY 191 (191)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ------------cccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 44667788999999994 8999999999999999999988763
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.90 E-value=1.4e-24 Score=186.06 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=116.2
Q ss_pred CCChhhhHHhhhhCCCCC---CCCceeeeccceeEEEcCeEEeeeeeeCCCCccccc---CCCCccccccchhHHhhcch
Q psy8274 1 AVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR---LRPLSYPQTGLSMAKEIGAV 74 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~ 74 (228)
|||||||++++..+.+.. .+.||++..+.. ++ ..+.+++|||+||++|.. .++.+|+++
T Consensus 9 gvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a----------- 73 (331)
T 3r7w_B 9 RCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSV----------- 73 (331)
T ss_dssp TSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTC-----------
T ss_pred CCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCC-----------
Confidence 799999999887664433 256777665542 33 458999999999999963 357788888
Q ss_pred hhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh--hhHHHHHHhhHHHHhhhCCCCCEEEEEeC
Q psy8274 75 KYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP--ASFENVRAKWYPEVRHHCPSTPIILVGTK 152 (228)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~--~s~~~~~~~~~~~l~~~~~~~piilv~nK 152 (228)
+++|+|||++++ +++..+. .|+..+.+..+++|++|||||
T Consensus 74 -------------------------------------~~~IlV~Ditd~~~~~~~~l~-~~l~~~~~~~~~ipillvgNK 115 (331)
T 3r7w_B 74 -------------------------------------GALVYVIDSQDEYINAITNLA-MIIEYAYKVNPSINIEVLIHK 115 (331)
T ss_dssp -------------------------------------SEEEEECCCSSCTTHHHHHHH-HHHHHHHHHCTTCEEEEECCC
T ss_pred -------------------------------------CEEEEEEECCchHHHHHHHHH-HHHHHHhhcCCCCcEEEEEEC
Confidence 999999999998 3333333 445555566778999999999
Q ss_pred CCCCCchHHHHHHhhccCccccHHHHHHHHHH----hCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKE----IGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 153 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+|+.......+. .|.+..+++..+++. ++ .+|+|+||++ ++|.++|..+++.++..
T Consensus 116 ~DL~~~~~R~~~-----~R~V~~~~~~~la~~~~~~~~-i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 116 VDGLSEDFKVDA-----QRDIMQRTGEELLELGLDGVQ-VSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CCSSCSHHHHHH-----HHHHHHHHHHTTSSSSCSCCC-EEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred cccCchhhhhhH-----HHHhhHHHHHHHHhhcccccC-ceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 999865321110 145777888888886 67 5899999998 69999999999988743
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.89 E-value=2e-22 Score=157.03 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=107.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+++...+ ...+.+++. .+.+|||+|++.+..++..++..+
T Consensus 18 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 79 (178)
T 2lkc_A 18 DHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVT---------------- 79 (178)
T ss_dssp TTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCC----------------
T ss_pred CCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhC----------------
Confidence 7999999999999998877777664433 455677775 567999999999998888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++...... .++..+.. .+.|+++|+||+|+....
T Consensus 80 --------------------------------d~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~ 123 (178)
T 2lkc_A 80 --------------------------------DIVILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN 123 (178)
T ss_dssp --------------------------------CEEEEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC
T ss_pred --------------------------------CEEEEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC
Confidence 999999999984333222 12223332 378999999999998631
Q ss_pred HHHHHHhhccCccccHHHHHHHHH-------HhC-CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAK-------EIG-AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~-------~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
. ++.....+ .++ ..+++++||++|.|++++|+++++.+...+.
T Consensus 124 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 124 P---------------DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp H---------------HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred H---------------HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 1 11111111 122 1489999999999999999999998765443
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.89 E-value=2.7e-23 Score=167.38 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=108.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCe-EEeeeeeeCCCCccccc-CCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK-PINLGLWDTAGQEDYDR-LRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|...+.++..+.+. +.+++. .+.+.+|||+|++.+.. ++..+++.+
T Consensus 17 ~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~--------------- 79 (214)
T 2fh5_B 17 DSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA--------------- 79 (214)
T ss_dssp TSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE---------------
T ss_pred CCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC---------------
Confidence 79999999999999998887766544333 555544 58899999999998876 666667777
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChh-hHHHHHHhhHHHHhhh---CCCCCEEEEEeCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPA-SFENVRAKWYPEVRHH---CPSTPIILVGTKLD 154 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~---~~~~piilv~nK~D 154 (228)
|++++|||+++.. ++....+.|...+... ..+.|++||+||+|
T Consensus 80 ---------------------------------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 126 (214)
T 2fh5_B 80 ---------------------------------RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 126 (214)
T ss_dssp ---------------------------------EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTT
T ss_pred ---------------------------------CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCC
Confidence 9999999999854 5666664555555542 34689999999999
Q ss_pred CCCchHHHHH---Hh-------hccCccccHHH------------HHHHHHHhC--CceEEEecccCC------CCHHHH
Q psy8274 155 LRDDKETIEK---LK-------EKKLAPITYPQ------------GLSMAKEIG--AVKYLECSALTQ------KGLKTV 204 (228)
Q Consensus 155 l~~~~~~~~~---~~-------~~~~~~v~~~~------------~~~~~~~~~--~~~~~evSa~~~------~~v~~l 204 (228)
+.......+. .. ......++..+ +..|+.... ..+|+|+||++| .||+++
T Consensus 127 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~l 206 (214)
T 2fh5_B 127 IAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDL 206 (214)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHH
Confidence 9764321110 00 00111122222 222222221 368999999999 999999
Q ss_pred HHHHHHHh
Q psy8274 205 FDEAIRAV 212 (228)
Q Consensus 205 f~~l~~~i 212 (228)
|+++.+.+
T Consensus 207 f~~l~~~~ 214 (214)
T 2fh5_B 207 EKWLAKIA 214 (214)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998753
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.89 E-value=4.7e-23 Score=176.04 Aligned_cols=156 Identities=18% Similarity=0.266 Sum_probs=119.6
Q ss_pred CCChhhhHHhhhhC--CCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCccc-----ccCCCCccccccchhHHhhc
Q psy8274 1 AVGKTCLLISYTTN--AFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY-----DRLRPLSYPQTGLSMAKEIG 72 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~~~~~~~ 72 (228)
|||||||+++|+++ .+. ..+.+|++..+. .+.+++ .+.+.+||++|++.+ ..++..+++++
T Consensus 13 ~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a--------- 81 (307)
T 3r7w_A 13 GSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMV--------- 81 (307)
T ss_dssp TSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTC---------
T ss_pred CCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccC---------
Confidence 79999999999987 333 245566655443 334444 588999999999987 56666666666
Q ss_pred chhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhH---HHHhhhCCCCCEEEE
Q psy8274 73 AVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWY---PEVRHHCPSTPIILV 149 (228)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~---~~l~~~~~~~piilv 149 (228)
|++++|||++++++|..+. .|. ..+....+++|++||
T Consensus 82 ---------------------------------------d~vi~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv 121 (307)
T 3r7w_A 82 ---------------------------------------QVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVL 121 (307)
T ss_dssp ---------------------------------------SEEEEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEE
T ss_pred ---------------------------------------CEEEEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEE
Confidence 9999999999999999986 564 444555678999999
Q ss_pred EeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 150 GTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+||+|+.......+. ..+..+++..+++.+|+ .+++++||++ .++.++|..++..++.
T Consensus 122 ~NK~Dl~~~~~r~~~------~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 122 LHKMDLVQLDKREEL------FQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECGGGSCHHHHHHH------HHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EecccccchhhhhHH------HHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 999999874321110 11566788999999984 6999999999 8999999999987764
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.3e-23 Score=181.29 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=105.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+... .||++..+. .++...+.+.+|||+|++.+..++..++..+
T Consensus 175 ~vGKSsLl~~l~~~~~~~~-~pT~~~~~~---~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 233 (329)
T 3o47_A 175 AAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNT----------------- 233 (329)
T ss_dssp TSSHHHHHHHTCSSCCEEE-EEETTEEEE---EEEETTEEEEEEECC-----CCSHHHHHTTE-----------------
T ss_pred CccHHHHHHHHhCCCCCCc-ccccceEEE---EEecCcEEEEEEECCCCHhHHHHHHHHhccC-----------------
Confidence 7999999999999887644 355543332 2333447899999999999998888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHH-hhhC-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEV-RHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l-~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+ .... .++|++||+||+|+.+.
T Consensus 234 -------------------------------d~vilV~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 234 -------------------------------QGLIFVVDSNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp -------------------------------EEEEEEEETTCSSSHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCchHHHHHHH-HHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 9999999999999999998 555444 3332 57999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
....+ +....+...++..+ .+++++||++|.||+++|+++++.+.+.
T Consensus 282 ~~~~~---------i~~~~~~~~~~~~~-~~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 282 MNAAE---------ITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp CCHHH---------HHHHHTCTTCCSSC-EEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred cCHHH---------HHHHhchhhhhcCC-CEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 21111 00011111111223 4799999999999999999999988753
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=1.8e-22 Score=156.54 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=101.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+...+.|++. +.....+.+++ ..+.+|||+|++.+...+. .+.+.......
T Consensus 13 gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~~~----- 79 (165)
T 2wji_A 13 NVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSI------DEIIARDYIIN----- 79 (165)
T ss_dssp TSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSH------HHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcch------hHHHHHHHHhc-----
Confidence 7999999999998776544445442 33344555665 5789999999987643210 01111110000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
..++++++|||+++.+++ . .|+..+.+. +.|+++|+||+|+...
T Consensus 80 -----------------------------~~~~~~i~v~D~~~~~~~---~-~~~~~~~~~--~~p~ilv~nK~Dl~~~- 123 (165)
T 2wji_A 80 -----------------------------EKPDLVVNIVDATALERN---L-YLTLQLMEM--GANLLLALNKMDLAKS- 123 (165)
T ss_dssp -----------------------------HCCSEEEEEEETTCHHHH---H-HHHHHHHHT--TCCEEEEEECHHHHHH-
T ss_pred -----------------------------CCCCEEEEEecCCchhHh---H-HHHHHHHhc--CCCEEEEEEchHhccc-
Confidence 011999999999986543 3 566666553 7999999999998653
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++. ++..+++.++ .+++++||++|.||+++|+++.+.+
T Consensus 124 -----------~~~~~-~~~~~~~~~~-~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 124 -----------LGIEI-DVDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp -----------TTCCC-CHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred -----------cChhh-HHHHHHHHhC-CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 22332 4677888889 4899999999999999999998875
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=1.4e-21 Score=176.88 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=113.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+. .+.||++..+. .++...+.+.+|||+|++.+..++..++..+
T Consensus 332 nvGKSsLl~~l~~~~~~-~~~~T~~~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a----------------- 390 (497)
T 3lvq_E 332 AAGKTTILYKLKLGQSV-TTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT----------------- 390 (497)
T ss_dssp TSSHHHHHHHHHHSSCC-CCCCCSSEEEE---EEESSSCEEEEEEECCCGGGSGGGGGGGTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCC-CcCCccceeEE---EEEeCCEEEEEEECCCcHHHHHHHHHHhccC-----------------
Confidence 79999999999998875 45567654443 2334457899999999999999998888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++++|..+. .|+..+.+.. .++|++||+||+|+...
T Consensus 391 -------------------------------d~~i~V~D~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 391 -------------------------------QGLIFVVDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp -------------------------------CEEEEEEETTCGGGHHHHH-HHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred -------------------------------CEEEEEEECcchhHHHHHH-HHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 9999999999999999998 6666665432 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHH-----HHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSM-----AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTV 219 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~ 219 (228)
. +..+.... +...+ .+++++||++|.||+++|+++.+.+....+..
T Consensus 439 ~--------------~~~~~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 439 M--------------KPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYKSKLAAA 489 (497)
T ss_dssp C--------------CHHHHHHHTTCTTCCSSC-EEEEECBTTTTBTHHHHHHHHHHHCC------
T ss_pred C--------------CHHHHHHHhchhhhhcCC-eEEEEEECCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 2 11111111 11123 46999999999999999999999887655543
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.86 E-value=3.5e-22 Score=157.18 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=105.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCccc-----------ccCCCCcccc-ccchhH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY-----------DRLRPLSYPQ-TGLSMA 68 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~~~~~~~-~~~~~~ 68 (228)
|||||||+++|+++.+...+.|++... ...+.++ .+.+||++|.... ..++..+++. +
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 80 (190)
T 2cxx_A 11 NVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA----- 80 (190)
T ss_dssp TSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG-----
T ss_pred CCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhh-----
Confidence 799999999999998877766655321 2223333 6899999995432 2121112211 1
Q ss_pred HhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHH--------Hhh-
Q psy8274 69 KEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPE--------VRH- 139 (228)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~--------l~~- 139 (228)
+++++||+++|..+|..+.+.|... +..
T Consensus 81 -------------------------------------------~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (190)
T 2cxx_A 81 -------------------------------------------KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117 (190)
T ss_dssp -------------------------------------------GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred -------------------------------------------ccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHH
Confidence 8888889999999998875477653 211
Q ss_pred h-CCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc------eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 140 H-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV------KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 140 ~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
. ..+.|+++|+||+|+.... .+++..+++.+++. +++++||++|.|++++|+++++.+
T Consensus 118 ~~~~~~piilv~nK~Dl~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 118 LRELDIPTIVAVNKLDKIKNV---------------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHTTCCEEEEEECGGGCSCH---------------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhcCCceEEEeehHhccCcH---------------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 1 2479999999999998741 34567788888852 479999999999999999999988
Q ss_pred cCCCC
Q psy8274 213 LCPVP 217 (228)
Q Consensus 213 ~~~~~ 217 (228)
...+.
T Consensus 183 ~~~~~ 187 (190)
T 2cxx_A 183 RERQG 187 (190)
T ss_dssp HHC--
T ss_pred chhhc
Confidence 76543
No 110
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.86 E-value=1e-21 Score=150.41 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=94.9
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccC-------CCCccccccchhHHhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL-------RPLSYPQTGLSMAKEI 71 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~~~~~~~~~ 71 (228)
|||||||+++|.++.+. ..+.++..+.+...+..++. .+.+||++|+..+... +..++..
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~--------- 79 (161)
T 2dyk_A 11 NVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED--------- 79 (161)
T ss_dssp TSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT---------
T ss_pred CCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh---------
Confidence 79999999999988753 33333334444555666664 6789999998764321 1111222
Q ss_pred cchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEe
Q psy8274 72 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGT 151 (228)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~n 151 (228)
+|++++|||++++.+.... .+...+.. .+.|+++|+|
T Consensus 80 ---------------------------------------~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~ilv~n 116 (161)
T 2dyk_A 80 ---------------------------------------AEVVLFAVDGRAELTQADY--EVAEYLRR--KGKPVILVAT 116 (161)
T ss_dssp ---------------------------------------CSEEEEEEESSSCCCHHHH--HHHHHHHH--HTCCEEEEEE
T ss_pred ---------------------------------------CCEEEEEEECCCcccHhHH--HHHHHHHh--cCCCEEEEEE
Confidence 2999999999987555432 33444444 3689999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
|+|+.+.. +++..++ .+++.+++++||++|.|++++|+++++.+
T Consensus 117 K~Dl~~~~----------------~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 117 KVDDPKHE----------------LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CCCSGGGG----------------GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred Ccccccch----------------HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 99998642 1223344 56755899999999999999999998865
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=2.6e-21 Score=157.78 Aligned_cols=162 Identities=12% Similarity=0.112 Sum_probs=100.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCc-eeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+.....+ +..+........++ ..+.+|||+|+.......... +. ..++.
T Consensus 39 ~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~-------~~--~~~~~---- 103 (228)
T 2qu8_A 39 NVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNT-------IE--MTTIT---- 103 (228)
T ss_dssp TSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCH-------HH--HHHHH----
T ss_pred CCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhh-------HH--HHHHH----
Confidence 7999999999999877422211 11111122223333 678999999985421100000 00 00000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHH-HhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVR-AKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~-~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.. ...+|++++|||++++.+|.... ..|+..+....++.|+++|+||+|+...
T Consensus 104 -----------------~~---------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 104 -----------------AL---------AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp -----------------HH---------HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred -----------------Hh---------hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 00 01129999999999998875221 1566666665568999999999999864
Q ss_pred hHHHHHHhhccCccccHH---HHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYP---QGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~---~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. .+..+ .+..++...+ ..+++++||++|.||+++|+++++.+...
T Consensus 158 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 158 D------------SLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp -------------CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred h------------hhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 2 24333 4556666665 24899999999999999999999988643
No 112
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.85 E-value=1.1e-21 Score=179.31 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=110.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecccee-------E--EEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-------V--MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEI 71 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~-------~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 71 (228)
|||||||+++|+++.|...+.+|++..+... + ..++..+.+.+||++|++.+..+...+++.+
T Consensus 51 ~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~-------- 122 (535)
T 3dpu_A 51 MAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRS-------- 122 (535)
T ss_dssp CSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSS--------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCC--------
Confidence 7999999999999999888889887665422 1 2234468899999999999888877777776
Q ss_pred cchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEe
Q psy8274 72 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGT 151 (228)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~n 151 (228)
|++++|||+++.+. +. .|+..+..+.++.|++||+|
T Consensus 123 ----------------------------------------d~ii~V~D~s~~~~---~~-~~~~~l~~~~~~~pvilV~N 158 (535)
T 3dpu_A 123 ----------------------------------------SVYMLLLDSRTDSN---KH-YWLRHIEKYGGKSPVIVVMN 158 (535)
T ss_dssp ----------------------------------------EEEEEEECGGGGGG---HH-HHHHHHHHHSSSCCEEEEEC
T ss_pred ----------------------------------------cEEEEEEeCCCchh---HH-HHHHHHHHhCCCCCEEEEEE
Confidence 99999999987644 34 78888888877899999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
|+|+... +.+..+++..++..+++ +++++||++|.||+++|..+.+.+....
T Consensus 159 K~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 159 KIDENPS------------YNIEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp CTTTCTT------------CCCCHHHHHHHCGGGTT-CEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred CCCcccc------------cccCHHHHHHHHHhcCC-ceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 9999864 45777888888888884 8999999999999999999999887654
No 113
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.84 E-value=4.7e-21 Score=151.09 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=99.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCc----------ccccCCCCccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE----------DYDRLRPLSYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~~~~~~~~~~ 70 (228)
|||||||+++|+++.+. .+.++.+..........+ ..+.+||++|.. .+..++..++..+
T Consensus 33 ~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~------- 102 (195)
T 3pqc_A 33 NVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNR------- 102 (195)
T ss_dssp TSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHC-------
T ss_pred CCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcC-------
Confidence 79999999999988743 444554443332222112 357799999932 2221111111110
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
..++++++|+|+++..+.... .+...+... +.|+++|+
T Consensus 103 --------------------------------------~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~ 140 (195)
T 3pqc_A 103 --------------------------------------WSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVL 140 (195)
T ss_dssp --------------------------------------TTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEE
T ss_pred --------------------------------------cCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEE
Confidence 122999999999886554433 233333333 68999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
||+|+....+ +....+++..++...+..+++++||++|.||+++|+++.+.+.+
T Consensus 141 nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 141 TKMDKVKMSE----------RAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECGGGSCGGG----------HHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EChhcCChHH----------HHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 9999986432 23444566777777665789999999999999999999988753
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=2.5e-21 Score=152.30 Aligned_cols=154 Identities=17% Similarity=0.124 Sum_probs=105.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+...+.+++ .+.....+.+++ ..+.+|||+|++.+..... ...+.....
T Consensus 17 gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~------~~~~~~~~~------- 81 (188)
T 2wjg_A 17 NVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSI------DEIIARDYI------- 81 (188)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSH------HHHHHHHHH-------
T ss_pred CCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccH------HHHHHHHHH-------
Confidence 799999999999876544444444 233345556665 6789999999987642210 001110000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
.. ..++++++|+|.++ +.... .|+..+... +.|+++|+||+|+...
T Consensus 82 ------------~~---------------~~~~~~i~v~d~~~---~~~~~-~~~~~~~~~--~~piilv~nK~Dl~~~- 127 (188)
T 2wjg_A 82 ------------IN---------------EKPDLVVNIVDATA---LERNL-YLTLQLMEM--GANLLLALNKMDLAKS- 127 (188)
T ss_dssp ------------HH---------------HCCSEEEEEEEGGG---HHHHH-HHHHHHHTT--TCCEEEEEECHHHHHH-
T ss_pred ------------hc---------------cCCCEEEEEecchh---HHHHH-HHHHHHHhc--CCCEEEEEEhhhcccc-
Confidence 00 01299999999886 44444 676666653 7899999999998754
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+. .++..+++.++ .+++++||+++.|++++|+++++.+....
T Consensus 128 -----------~~~~-~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 128 -----------LGIE-IDVDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp -----------TTCC-CCHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred -----------ccch-HHHHHHHHHhC-CCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 2233 35678888889 48999999999999999999999887654
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.84 E-value=3.3e-21 Score=152.45 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=91.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccce-eEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.++.+.+... ...+++ .+.+|||+|........
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~----------------------- 86 (195)
T 1svi_A 33 NVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSK----------------------- 86 (195)
T ss_dssp TSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCH-----------------------
T ss_pred CCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCH-----------------------
Confidence 799999999999988766666666544432 234444 58999999943211000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
...+.+.......+... ..+|++++|||++++.++... .++..+.. .+.|+++|+||+|+....
T Consensus 87 ------~~~~~~~~~~~~~~~~~------~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 87 ------SEREAWGRMIETYITTR------EELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKG 150 (195)
T ss_dssp ------HHHHHHHHHHHHHHHHC------TTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGG
T ss_pred ------HHHHHHHHHHHHHHhhh------hcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChH
Confidence 00000111111111100 112899999999998888765 34444444 378999999999998753
Q ss_pred HHHHHHhhccCccccHHHHHH-HHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 160 ETIEKLKEKKLAPITYPQGLS-MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+..+ ..+++.. +....+ .+++++||++|.|++++|+++.+.+.
T Consensus 151 ~~~~----------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 151 KWDK----------HAKVVRQTLNIDPE-DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp GHHH----------HHHHHHHHHTCCTT-SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHH----------HHHHHHHHHcccCC-CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 2111 1122222 222234 58999999999999999999998764
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=7.2e-22 Score=154.44 Aligned_cols=149 Identities=18% Similarity=0.255 Sum_probs=100.9
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++..+ ...+.++..+.+...+.+++. .+.+|||+|+..+..... ...+...+..+
T Consensus 14 g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~------~~~~~~~~~~~---- 81 (172)
T 2gj8_A 14 NAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVE------RIGIERAWQEI---- 81 (172)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHH------HHHHHHHHHHH----
T ss_pred CCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHH------HHHHHHHHHHH----
Confidence 7999999999998764 334445545555667777875 478999999865321100 00000000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~ 157 (228)
..+|++++|||++++.++... .|+..+.+.. .++|+++|+||+|+..
T Consensus 82 ------------------------------~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 82 ------------------------------EQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp ------------------------------HTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred ------------------------------HhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCc
Confidence 112999999999999998743 6777777654 4699999999999854
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. .. +++..+ .+++++||++|.||+++|+++.+.+.
T Consensus 130 ~~-------------~~------~~~~~~-~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 130 ET-------------LG------MSEVNG-HALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CC-------------CE------EEEETT-EEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred ch-------------hh------hhhccC-CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 21 00 111234 58999999999999999999998764
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=6.9e-20 Score=156.50 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=108.3
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++..+.. ....|...........+ ....+.+|||||+..+.. +. .. +..|
T Consensus 20 nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~-~~-~l---~~~~----------- 82 (308)
T 3iev_A 20 NVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKK-SD-VL---GHSM----------- 82 (308)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCT-TC-HH---HHHH-----------
T ss_pred CCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCcccc-ch-hH---HHHH-----------
Confidence 799999999999988742 22222222222223333 146788999999876431 00 00 1111
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.......+ ..+|++++|+|++++.++.... .|+..+... +.|+++|+||+|+...
T Consensus 83 -------------~~~~~~~l---------~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~ 137 (308)
T 3iev_A 83 -------------VEIAKQSL---------EEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGP 137 (308)
T ss_dssp -------------HHHHHHHH---------HHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSS
T ss_pred -------------HHHHHHHh---------hcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCC
Confidence 11111110 0129999999999999998876 667777774 7899999999999832
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+....+....+.+.++ ..+++++||++|.|++++|+++...+...
T Consensus 138 ------------~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 138 ------------AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp ------------GGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred ------------HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 2244455667777773 56899999999999999999999988653
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.81 E-value=1.1e-19 Score=151.53 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=103.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCc-eeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+.....| +..+.....+..++ ..+.+||+||+..+...+. ...++.....
T Consensus 15 nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~------~e~v~~~~~~------ 80 (258)
T 3a1s_A 15 NVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSI------DEKIARDYLL------ 80 (258)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSH------HHHHHHHHHH------
T ss_pred CCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCH------HHHHHHHHHh------
Confidence 7999999999998765322222 22222233334334 6889999999987754331 0011110000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
. ..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+...
T Consensus 81 --------------------~--------~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~- 125 (258)
T 3a1s_A 81 --------------------K--------GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKK- 125 (258)
T ss_dssp --------------------H--------SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHH-
T ss_pred --------------------h--------cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCc-
Confidence 0 1129999999999976654 344455444 7999999999998654
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+.. ++..+++.+|+ +++++||++|.|++++|+++.+.+..
T Consensus 126 -----------~~i~~-~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 126 -----------TGMKI-DRYELQKHLGI-PVVFTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp -----------TTCCB-CHHHHHHHHCS-CEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred -----------cchHH-HHHHHHHHcCC-CEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence 22332 46788899994 99999999999999999999997753
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.80 E-value=3.3e-20 Score=155.93 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=102.2
Q ss_pred CCChhhhHHhhhhCC-CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++.. +.+.+..+..+ .+...++. ...+.+|||||+..+..... ...++....
T Consensus 13 nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~------~e~v~~~~~------- 76 (272)
T 3b1v_A 13 NSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSP------EAKVARDYL------- 76 (272)
T ss_dssp TSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSH------HHHHHHHHH-------
T ss_pred CCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCCh------HHHHHHHHH-------
Confidence 799999999999865 34444322222 22233444 56899999999987653211 001111000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
.. ..+|++++|||+++.+++. .|...+... +.|+++|+||+|+...
T Consensus 77 -------------------~~--------~~~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~- 122 (272)
T 3b1v_A 77 -------------------LS--------QRADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDG- 122 (272)
T ss_dssp -------------------HT--------TCCSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHH-
T ss_pred -------------------hc--------CCCCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCc-
Confidence 00 1129999999999876653 444555543 7999999999998653
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+. .++..+++.+|+ +++++||++|.|++++|+++.+.+..
T Consensus 123 -----------~~~~-~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 123 -----------QGKK-INVDKLSYHLGV-PVVATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp -----------TTCC-CCHHHHHHHHTS-CEEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred -----------CCcH-HHHHHHHHHcCC-CEEEEEccCCCCHHHHHHHHHHHHhh
Confidence 2233 356788888995 89999999999999999999986543
No 120
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=4.2e-20 Score=149.01 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=93.1
Q ss_pred CCChhhhHHhhhhCCCCC---CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCcccc----ccchhHHhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ----TGLSMAKEIGA 73 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~~~~~~~~~~ 73 (228)
|||||||+++|.++.+.. .+.++++..+ ..+.+.+||++|++.++..+..++.. +
T Consensus 22 g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~---------- 83 (218)
T 1nrj_B 22 NSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV---------- 83 (218)
T ss_dssp TSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE----------
T ss_pred CCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccccC----------
Confidence 799999999999988754 3566665444 34678999999998887665555443 3
Q ss_pred hhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC-ChhhHHHHHHhhHHHHhhh-----CCCCCEE
Q psy8274 74 VKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV-NPASFENVRAKWYPEVRHH-----CPSTPII 147 (228)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt-~~~s~~~~~~~~~~~l~~~-----~~~~pii 147 (228)
|++++|||++ ++.+|..+. .|+..+... ..+.|++
T Consensus 84 --------------------------------------~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~i 124 (218)
T 1nrj_B 84 --------------------------------------KGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDIL 124 (218)
T ss_dssp --------------------------------------EEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEE
T ss_pred --------------------------------------CEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEE
Confidence 9999999999 899999888 776666543 2579999
Q ss_pred EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC
Q psy8274 148 LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG 200 (228)
Q Consensus 148 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~ 200 (228)
+|+||+|+.......+. ...-.+++..++...+ .+++++||++|.+
T Consensus 125 lv~nK~Dl~~~~~~~~~------~~~l~~~~~~~~~~~~-~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 125 IACNKSELFTARPPSKI------KDALESEIQKVIERRK-KSLNEVERKINEE 170 (218)
T ss_dssp EEEECTTSTTCCCHHHH------HHHHHHHHHHHHHHHH-HHHHC--------
T ss_pred EEEEchHhcccCCHHHH------HHHHHHHHHHHHHHHh-ccccccccccccc
Confidence 99999999875321111 0111445667777777 4788999998764
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.79 E-value=1.7e-19 Score=145.70 Aligned_cols=168 Identities=14% Similarity=0.026 Sum_probs=96.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+.....++.+.+.. ....+. .....+.+|||||......... .
T Consensus 39 ~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---------~----------- 98 (223)
T 4dhe_A 39 NAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGA---------A----------- 98 (223)
T ss_dssp HHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCST---------H-----------
T ss_pred CCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChh---------h-----------
Confidence 68999999999988632222222222221 122333 3346789999999643211000 0
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.+.+.......+.. ...+|++++|+|++++.+.... .|+..+... +.|+++|+||+|+...
T Consensus 99 ---------~~~~~~~~~~~~~~------~~~~d~vi~v~d~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 99 ---------KAHWEQLLSSYLQT------RPQLCGMILMMDARRPLTELDR--RMIEWFAPT--GKPIHSLLTKCDKLTR 159 (223)
T ss_dssp ---------HHHHHHHHHHHHHH------CTTEEEEEEEEETTSCCCHHHH--HHHHHHGGG--CCCEEEEEECGGGSCH
T ss_pred ---------HHHHHHHHHHHHhc------CcCcCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEeccccCCh
Confidence 00000000000000 0112899999999986554332 566666654 7899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh------CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI------GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
....+. .++.......+ ...+++++||++|.||+++|+++.+.+.....
T Consensus 160 ~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 160 QESINA----------LRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHHH----------HHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred hhHHHH----------HHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 432111 11222222221 33689999999999999999999998875443
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.79 E-value=7.5e-20 Score=152.40 Aligned_cols=153 Identities=11% Similarity=0.121 Sum_probs=100.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|+|++..+.....|++ .+.....+.+++. .+.+|||||+..+....... .....++.....
T Consensus 11 n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~--~~~e~i~~~~~~------ 80 (256)
T 3iby_A 11 NCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGI--SQDEQIAAQSVI------ 80 (256)
T ss_dssp TSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC--------CHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCC--CHHHHHHHHHHh------
Confidence 799999999999876533333333 3444555666664 78999999997765321100 000001110000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
. ..+|++++|+|+++.+++..+. . .+... +.|+++|+||+|+....
T Consensus 81 --------------------~--------~~~d~vi~VvDas~~~~~~~l~-~---~l~~~--~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 81 --------------------D--------LEYDCIINVIDACHLERHLYLT-S---QLFEL--GKPVVVALNMMDIAEHR 126 (256)
T ss_dssp --------------------H--------SCCSEEEEEEEGGGHHHHHHHH-H---HHTTS--CSCEEEEEECHHHHHHT
T ss_pred --------------------h--------CCCCEEEEEeeCCCchhHHHHH-H---HHHHc--CCCEEEEEEChhcCCcC
Confidence 0 1129999999999977766554 3 33333 68999999999987542
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+.. +...+.+.+| .+++++||++|.|++++|+++.+.
T Consensus 127 ------------~~~~-~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 127 ------------GISI-DTEKLESLLG-CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------------TCEE-CHHHHHHHHC-SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------------CcHH-HHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHhh
Confidence 1222 2456778889 499999999999999999999886
No 123
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=1.7e-19 Score=153.59 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=111.3
Q ss_pred hhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccc
Q psy8274 5 TCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALT 83 (228)
Q Consensus 5 Tsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (228)
.+|+.+|+.+.|. ..+.||+++.+...+..++ .+.+||+ +++++.+++.+++++
T Consensus 31 ~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~a-------------------- 85 (301)
T 1u0l_A 31 GERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANV-------------------- 85 (301)
T ss_dssp CCEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESC--------------------
T ss_pred CcEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccC--------------------
Confidence 3789999999998 8999999987765433333 7899999 899999999999998
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHH
Q psy8274 84 QKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETI 162 (228)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~ 162 (228)
|++|+|||++++. ++..+. .|+..+... ++|++||+||+||.+...
T Consensus 86 ----------------------------d~vilV~D~~~~~~s~~~l~-~~l~~~~~~--~~piilv~NK~DL~~~~~-- 132 (301)
T 1u0l_A 86 ----------------------------DQVILVVTVKMPETSTYIID-KFLVLAEKN--ELETVMVINKMDLYDEDD-- 132 (301)
T ss_dssp ----------------------------CEEEEEECSSTTCCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGCCHHH--
T ss_pred ----------------------------CEEEEEEeCCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEeHHHcCCchh--
Confidence 9999999999998 788776 899887663 799999999999986522
Q ss_pred HHHhhccCccccHHHHHHHHHHhCC-ceEEEecccCCCCHHHHHHHHHH
Q psy8274 163 EKLKEKKLAPITYPQGLSMAKEIGA-VKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 163 ~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
+ +++..+++.++. .+++++||++|.||+++|..+..
T Consensus 133 ----------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 133 ----------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp ----------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred ----------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 2 345666666651 38999999999999999988754
No 124
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=2.5e-19 Score=160.73 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=103.7
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++.. +...+.+|..+.+...+..++. .+.+|||+|...........- .........++.
T Consensus 205 ~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e---~~~~~~~~~~~~--- 276 (456)
T 4dcu_A 205 NVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTE---KYSVLRALKAID--- 276 (456)
T ss_dssp TSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCS---HHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHH---HHHHHHHHHHHh---
Confidence 799999999999764 2345555656666777777775 688999999543221110000 000000000111
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
++|++++|+|++++.+-... .|...+... +.|++||+||+|+...
T Consensus 277 -------------------------------~ad~~llviD~~~~~~~~~~--~~~~~~~~~--~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 277 -------------------------------RSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDK 321 (456)
T ss_dssp -------------------------------HCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCC
T ss_pred -------------------------------hCCEEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEEChhcCCC
Confidence 11999999999986554443 566666653 6999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh----CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI----GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++...++.. +..+++++||++|.||+++|..+.+.+..
T Consensus 322 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 322 ------------DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ------------CSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ------------chHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 345566666666654 23689999999999999999999987743
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=1.8e-19 Score=160.80 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=101.6
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++..+ ...+.+|..+.+...+..++. .+.+|||+|+.+........-.. .......++..
T Consensus 185 nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~---~~~~~~~~~~~-- 257 (436)
T 2hjg_A 185 NVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKY---SVLRALKAIDR-- 257 (436)
T ss_dssp TSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHH---HHHHHHHHHHH--
T ss_pred CCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHH---HHHHHHHHHHh--
Confidence 7999999999998876 344555556666667777775 47899999986543321110000 00000001111
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+|++++|||++++.+++.. .|+..+... +.|+++|+||+|+.+.
T Consensus 258 --------------------------------ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 258 --------------------------------SEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDK 301 (436)
T ss_dssp --------------------------------CSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCC
T ss_pred --------------------------------CCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCc
Confidence 1999999999999998886 577776654 7999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHH-HHHh---CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSM-AKEI---GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~---~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ..+.++.... .+.+ +..+++++||++|.||+++|+.+.+.+..
T Consensus 302 ~------------~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 302 D------------ESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp C------------TTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred c------------hHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 2 2222233222 2222 23589999999999999999999887753
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.77 E-value=1.7e-18 Score=155.86 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=86.7
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCC--------ccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL--------SYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~--------~~~~~~~~~~~~ 70 (228)
|||||||+|+|++.. +...+.+|..+.+...+.+++ +.+.+|||+|+..+...+.. ++..+
T Consensus 243 nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~a------- 313 (476)
T 3gee_A 243 NAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEA------- 313 (476)
T ss_dssp TSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCCSSC-------
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccC-------
Confidence 799999999999875 344455555666667777777 56899999998775533321 23333
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
|++++|||++++.++..+. .+...+... .+.|+++|+
T Consensus 314 -----------------------------------------D~vl~VvD~s~~~s~~~~~-~~~~~l~~l-~~~piIvV~ 350 (476)
T 3gee_A 314 -----------------------------------------DLILYLLDLGTERLDDELT-EIRELKAAH-PAAKFLTVA 350 (476)
T ss_dssp -----------------------------------------SEEEEEEETTTCSSGGGHH-HHHHHHHHC-TTSEEEEEE
T ss_pred -----------------------------------------CEEEEEEECCCCcchhhhH-HHHHHHHhc-CCCCEEEEE
Confidence 9999999999998885432 222222222 269999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
||+|+..... .. ...+.+. +..+++++||++|.|++++|+++.+.+.
T Consensus 351 NK~Dl~~~~~------------~~---~~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 351 NKLDRAANAD------------AL---IRAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ECTTSCTTTH------------HH---HHHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ECcCCCCccc------------hh---HHHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 9999987532 11 1233333 2258999999999999999999999887
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=5.7e-19 Score=150.38 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=97.2
Q ss_pred CCChhhhHHhhhhCCCCC-CCC-ceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYI-PTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++..+.. ... .|+.+.....+.. ....+.+|||||........
T Consensus 17 nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l---------------------- 72 (301)
T 1wf3_A 17 NVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDAL---------------------- 72 (301)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHH----------------------
T ss_pred CCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchhhHH----------------------
Confidence 799999999999988742 222 2333222222222 34688999999987532110
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
++.|.......+ ..+|++++|||++++.+.... .++..+....++.|+++|+||+|+...
T Consensus 73 ---------~~~~~~~~~~~l---------~~ad~il~VvD~~~~~~~~~~--~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 73 ---------GEFMDQEVYEAL---------ADVNAVVWVVDLRHPPTPEDE--LVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp ---------HHHHHHHHHHHT---------SSCSEEEEEEETTSCCCHHHH--HHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred ---------HHHHHHHHHHHH---------hcCCEEEEEEECCCCCChHHH--HHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 011111111111 123999999999987665532 344566665557999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHH-hCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKE-IGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
... ....++. .++.+++++||++|.|++++|+.+...+.
T Consensus 133 ~~~----------------~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 133 PEE----------------AMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp HHH----------------HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred hHH----------------HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 320 1112222 34457999999999999999999988664
No 128
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.76 E-value=4.6e-19 Score=154.00 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=107.7
Q ss_pred CCCCCCceeeeccceeE----------EEcC----eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccc
Q psy8274 16 FPGEYIPTVFDNYSANV----------MVDG----KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSA 81 (228)
Q Consensus 16 ~~~~~~~t~~~~~~~~~----------~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (228)
+.+.|.||+++.+..++ .+++ ..+.+++|||+|++.++.+|..+|+++
T Consensus 146 ~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~------------------ 207 (354)
T 2xtz_A 146 SDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGV------------------ 207 (354)
T ss_dssp HSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTE------------------
T ss_pred hcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCC------------------
Confidence 35678899877664322 2355 678999999999999999999999999
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC----------ChhhHHHHHHhhHHHHhhh--CCCCCEEEE
Q psy8274 82 LTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV----------NPASFENVRAKWYPEVRHH--CPSTPIILV 149 (228)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt----------~~~s~~~~~~~~~~~l~~~--~~~~piilv 149 (228)
+++|+|||++ +..+|.... .|+..+.+. ..++|++||
T Consensus 208 ------------------------------~~iI~v~dis~ydq~l~e~~~~~s~~~~~-~~~~~i~~~~~~~~~piiLv 256 (354)
T 2xtz_A 208 ------------------------------TAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLF 256 (354)
T ss_dssp ------------------------------EEEEEEEEGGGTTCBCSSCTTSBHHHHHH-HHHHHHHTCGGGSSCEEEEE
T ss_pred ------------------------------CEEEEEEECcccccccccccchhHHHHHH-HHHHHHHhccccCCCeEEEE
Confidence 9999999998 888999988 788777654 357999999
Q ss_pred EeCCCCCCchHHHHH------Hhhcc---CccccHHHHHHHHHHh---------------CCceEEEecccCCCCHHHHH
Q psy8274 150 GTKLDLRDDKETIEK------LKEKK---LAPITYPQGLSMAKEI---------------GAVKYLECSALTQKGLKTVF 205 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~~---------------~~~~~~evSa~~~~~v~~lf 205 (228)
|||+|+...+-.... +.... ....+.+++..++... ....++++||+++.||+++|
T Consensus 257 gNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF 336 (354)
T 2xtz_A 257 LNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF 336 (354)
T ss_dssp EECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred EECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence 999998643110000 00000 0012356777775431 22356899999999999999
Q ss_pred HHHHHHhcC
Q psy8274 206 DEAIRAVLC 214 (228)
Q Consensus 206 ~~l~~~i~~ 214 (228)
.++.+.+++
T Consensus 337 ~~v~~~I~~ 345 (354)
T 2xtz_A 337 KLVDETLRR 345 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 129
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=3e-19 Score=150.13 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=102.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|+|++..+...+.|++ .+.....+..++ ..+.+|||||+..+......... ...++......
T Consensus 13 n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~--~e~i~~~~~~~----- 83 (274)
T 3i8s_A 13 NSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSL--DEQIACHYILS----- 83 (274)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCH--HHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCH--HHHHHHHHHhh-----
Confidence 799999999999876543333333 333344455555 45788999999877643321110 00111111000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
..+|++++|+|+++.++...+. ..+... +.|+++|+||+|+....
T Consensus 84 -----------------------------~~~d~ii~VvD~~~~~~~~~~~----~~l~~~--~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 84 -----------------------------GDADLLINVVDASNLERNLYLT----LQLLEL--GIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp -----------------------------TCCSEEEEEEEGGGHHHHHHHH----HHHHHH--TCCEEEEEECHHHHHHT
T ss_pred -----------------------------cCCCEEEEEecCCChHHHHHHH----HHHHhc--CCCEEEEEECccchhhh
Confidence 1229999999999876655443 344444 79999999999987542
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+. .+...+++.+|+ +++++||++|.|++++|+++.+.+...
T Consensus 129 ------------~~~-~~~~~l~~~lg~-~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 129 ------------NIR-IEIDALSARLGC-PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp ------------TEE-ECHHHHHHHHTS-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred ------------hHH-HHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 122 235677888894 999999999999999999998876543
No 130
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.76 E-value=1.6e-18 Score=145.19 Aligned_cols=155 Identities=20% Similarity=0.092 Sum_probs=102.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+...+.+++ .+.....+..++. .+.+||+||+..+..... ...++....
T Consensus 13 g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~------~~~~~~~~~------- 77 (271)
T 3k53_A 13 NVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSI------DELIARNFI------- 77 (271)
T ss_dssp SSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCH------HHHHHHHHH-------
T ss_pred CCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCH------HHHHHHHhh-------
Confidence 799999999999877643333433 2333445555664 589999999987654211 000000000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
. ...+|++++|+|+++.+... .|...+... ...|+++|+||+|+....
T Consensus 78 -------------------~--------~~~~d~vi~v~D~~~~~~~~----~~~~~~~~~-~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 78 -------------------L--------DGNADVIVDIVDSTCLMRNL----FLTLELFEM-EVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp -------------------H--------TTCCSEEEEEEEGGGHHHHH----HHHHHHHHT-TCCSEEEEEECHHHHHHH
T ss_pred -------------------h--------ccCCcEEEEEecCCcchhhH----HHHHHHHhc-CCCCEEEEEEChhcCccc
Confidence 0 01129999999999864322 333344443 239999999999987542
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.. +...+.+.+| .+++++||++|.|++++|+.+...+....
T Consensus 126 ------------~~~~-~~~~l~~~lg-~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 126 ------------GAKI-DIKKMRKELG-VPVIPTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp ------------TCCC-CHHHHHHHHS-SCEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred ------------ccHH-HHHHHHHHcC-CcEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence 1222 2677888899 58999999999999999999999876543
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=2.4e-18 Score=153.60 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=93.6
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|+++.. ..++..+..+.....+.+++. .+.+|||+|.+.... ..+. ..+..
T Consensus 11 nvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~---~~~~---~~~~~--------- 73 (439)
T 1mky_A 11 NVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQ---DIIS---QKMKE--------- 73 (439)
T ss_dssp TSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGG---GCCC---HHHHH---------
T ss_pred CCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCcccccc---chHH---HHHHH---------
Confidence 7999999999998764 344444445666677777886 468899999875321 0000 00000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+....+ ..+|++++|||++++.+..+. .+...++.. ++|++||+||+|+.+.
T Consensus 74 ---------------~~~~~~---------~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~ 125 (439)
T 1mky_A 74 ---------------VTLNMI---------READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE 125 (439)
T ss_dssp ---------------HHHHHH---------TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH
T ss_pred ---------------HHHHHH---------HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc
Confidence 000000 112999999999987666542 233334443 6899999999998642
Q ss_pred hHHHHHHhhccCccccHHHH-HHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQG-LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ..++ ..+. .+|+.+++++||++|.|++++|+++...+..
T Consensus 126 ~---------------~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 126 F---------------EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp H---------------HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred c---------------HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 0 0112 2333 4565578999999999999999999998864
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.75 E-value=8.7e-19 Score=155.55 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=102.3
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||+++|++..+. ..+.++..+.....+.+.+. ..+.+|||+|+..+..+........ ..++
T Consensus 44 ~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~-------~~~l---- 111 (423)
T 3qq5_A 44 NVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA-------RRVF---- 111 (423)
T ss_dssp STTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH-------HHHH----
T ss_pred CCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH-------HHHH----
Confidence 79999999999988763 33444444555566666554 2788999999998766544311110 0000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..+|++++|||++..+.. ..|+..+... +.|+++|+||+|+...
T Consensus 112 ------------------------------~~aD~vllVvD~~~~~~~----~~~l~~l~~~--~~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 112 ------------------------------YRADCGILVTDSAPTPYE----DDVVNLFKEM--EIPFVVVVNKIDVLGE 155 (423)
T ss_dssp ------------------------------TSCSEEEEECSSSCCHHH----HHHHHHHHHT--TCCEEEECCCCTTTTC
T ss_pred ------------------------------hcCCEEEEEEeCCChHHH----HHHHHHHHhc--CCCEEEEEeCcCCCCc
Confidence 112999999999433222 2677777766 7999999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. .. +.+..+++.++ .+++++||++|.|++++|+++.+.+...
T Consensus 156 ~------------~~--~~~~~l~~~~g-~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 156 K------------AE--ELKGLYESRYE-AKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp C------------CT--HHHHHSSCCTT-CCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred c------------HH--HHHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 2 12 45566666778 4899999999999999999999998655
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.74 E-value=4e-18 Score=153.66 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=103.0
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCc-ccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE-DYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+|+|++.. +..++..|..+.....+.+++. .+.+|||+|.. .+....... + +...+..+.
T Consensus 253 nvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~----g--i~~~~~~~~-- 322 (482)
T 1xzp_A 253 NVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERL----G--IERTLQEIE-- 322 (482)
T ss_dssp HHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCC----C--HHHHHHHHH--
T ss_pred CCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHH----H--HHHHHHHhh--
Confidence 689999999999875 3556666667777777888874 57899999987 543222111 0 000000000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
.+|++|+|||++++.+++.. .++..+ .+.|+++|+||+|+..
T Consensus 323 --------------------------------~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 323 --------------------------------KADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVE 364 (482)
T ss_dssp --------------------------------HCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCC
T ss_pred --------------------------------cccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECccccc
Confidence 11999999999999888765 344333 3689999999999975
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
. ++.++...++. ++ .+++++||++|.|++++|+++.+.+.
T Consensus 365 ~--------------~~~~~~~~~~~-~~-~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 365 K--------------INEEEIKNKLG-TD-RHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp C--------------CCHHHHHHHHT-CS-TTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred c--------------cCHHHHHHHhc-CC-CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3 23334433332 33 47999999999999999999998765
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.74 E-value=3e-17 Score=142.79 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=71.4
Q ss_pred ceEEEEEecCChh--hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 112 DVFQICFSLVNPA--SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~--s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
|++++|+|++++. ++.... .|+..+.....+.|+++|+||+|+..... .+++..+++..+ .+
T Consensus 248 d~illV~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~~~--------------~~~~~~~~~~~~-~~ 311 (357)
T 2e87_A 248 NLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADEEN--------------IKRLEKFVKEKG-LN 311 (357)
T ss_dssp SEEEEEECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCHHH--------------HHHHHHHHHHTT-CC
T ss_pred CEEEEEEeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCChHH--------------HHHHHHHHHhcC-CC
Confidence 9999999999887 677776 88888887655799999999999987532 134556666777 58
Q ss_pred EEEecccCCCCHHHHHHHHHHHhc
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++++||++|.|++++|+++.+.+.
T Consensus 312 ~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 312 PIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp CEECBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999998774
No 135
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.74 E-value=1.2e-18 Score=151.46 Aligned_cols=147 Identities=18% Similarity=0.239 Sum_probs=108.8
Q ss_pred CCCCCCceeeeccc----------eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccc
Q psy8274 16 FPGEYIPTVFDNYS----------ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQK 85 (228)
Q Consensus 16 ~~~~~~~t~~~~~~----------~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (228)
+.+.|.||..+.+. ..+.++ .+.+.+|||+|++.++.+|..+|+++
T Consensus 162 ~~~~Y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a---------------------- 217 (353)
T 1cip_A 162 AQPNYIPTQQDVLRTRVKTTGIVETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGV---------------------- 217 (353)
T ss_dssp TSTTCCCCHHHHHTCCCCCCSEEEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTC----------------------
T ss_pred hcCCCCCCccccccccCceeceEEEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcC----------------------
Confidence 34567776654322 123333 47899999999999999999999999
Q ss_pred cchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC----------hhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCC
Q psy8274 86 GLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN----------PASFENVRAKWYPEVRHH--CPSTPIILVGTKL 153 (228)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~ 153 (228)
+++|||||+++ ..+|.... .|+..+.+. ..++|++|++||+
T Consensus 218 --------------------------~~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 218 --------------------------TAIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp --------------------------SEEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECH
T ss_pred --------------------------CEEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcEEEEEECc
Confidence 99999999999 56788887 787777654 2579999999999
Q ss_pred CCCCchHHH---HH-HhhccCccccHHHHHHHHHH-----------hCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 154 DLRDDKETI---EK-LKEKKLAPITYPQGLSMAKE-----------IGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 154 Dl~~~~~~~---~~-~~~~~~~~v~~~~~~~~~~~-----------~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|+....-.. +. +... ...++.+++..+++. .+ +.++++||+++.||+++|.++.+.+++.
T Consensus 271 DL~~~ki~~~~l~~~fp~~-~g~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTC-CSCSCHHHHHHHHHHHHHTTCSCTTTCC-EEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred Cchhhhccccchhhccccc-CCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 986431000 00 0000 013678888888873 44 5899999999999999999999988753
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.73 E-value=4.6e-18 Score=147.11 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=107.2
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++..+. ..|..|........+.+++ ...+.+||+||.......+
T Consensus 168 nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~----------------------- 223 (342)
T 1lnz_A 168 SVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQG----------------------- 223 (342)
T ss_dssp TSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCT-----------------------
T ss_pred CCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCccccccc-----------------------
Confidence 79999999999977542 2333232222222344443 1468899999964321111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHC---PSTPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~ 153 (228)
.++...|..+.+. ++++|+|+|+++ +.++..+. .|..++..+. .+.|++||+||+
T Consensus 224 -----~~l~~~fl~~i~~-------------~d~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~ 284 (342)
T 1lnz_A 224 -----VGLGHQFLRHIER-------------TRVIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKM 284 (342)
T ss_dssp -----TTTHHHHHHHHHH-------------CCEEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECT
T ss_pred -----chhHHHHHHHHHh-------------ccEEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECc
Confidence 0111112222221 299999999998 88999887 8999998875 368999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-ceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA-VKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
|+.... +....+.+.++. .+++++||+++.|++++|.++.+.+.....
T Consensus 285 Dl~~~~----------------e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 285 DMPEAA----------------ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp TSTTHH----------------HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred cCCCCH----------------HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 998642 234455555542 479999999999999999999998876443
No 137
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.72 E-value=7.1e-18 Score=148.44 Aligned_cols=146 Identities=15% Similarity=0.192 Sum_probs=106.3
Q ss_pred CCCCCceeeeccce----------eEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcccccccc
Q psy8274 17 PGEYIPTVFDNYSA----------NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKG 86 (228)
Q Consensus 17 ~~~~~~t~~~~~~~----------~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (228)
.++|.||+.+.+.. .+.+++ +.+++|||+|++.++.+|..+|+++
T Consensus 187 ~~~Y~PT~~Dil~~r~~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a----------------------- 241 (402)
T 1azs_C 187 QDDYVPSDQDLLRCRVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDV----------------------- 241 (402)
T ss_dssp CTTCCCCHHHHHHCCCCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTC-----------------------
T ss_pred ccccCCccccccccccceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhccCC-----------------------
Confidence 45788887665532 233343 7899999999999999999999999
Q ss_pred chhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC----------hhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCC
Q psy8274 87 LKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN----------PASFENVRAKWYPEVRHH--CPSTPIILVGTKLD 154 (228)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~D 154 (228)
+++|||||+++ ..+|..+. .|+..+.+. ..++|++|||||+|
T Consensus 242 -------------------------~~iIfV~dis~ydq~l~ed~~~ns~~e~~-~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 242 -------------------------TAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp -------------------------CEEEEEEETTGGGCBCTTTSCSBHHHHHH-HHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred -------------------------CEEEEEEECcccccccccccccchHHHHH-HHHHHHHhcccCCCCeEEEEEEChh
Confidence 99999999999 89999998 888888765 35799999999999
Q ss_pred CCCchHHHHH------Hhhcc------------CccccHHHHHHHHH-----H--------hCCceEEEecccCCCCHHH
Q psy8274 155 LRDDKETIEK------LKEKK------------LAPITYPQGLSMAK-----E--------IGAVKYLECSALTQKGLKT 203 (228)
Q Consensus 155 l~~~~~~~~~------~~~~~------------~~~v~~~~~~~~~~-----~--------~~~~~~~evSa~~~~~v~~ 203 (228)
|...+-.... +-... ...-+.+++..|++ . .+ +.++++||+++.||++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~-~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY-CYPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC-EEEEECCTTCHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc-cEEEEEEeecCcCHHH
Confidence 8643210000 00000 00002456666642 2 23 4678999999999999
Q ss_pred HHHHHHHHhcC
Q psy8274 204 VFDEAIRAVLC 214 (228)
Q Consensus 204 lf~~l~~~i~~ 214 (228)
+|..+.+.+++
T Consensus 375 vF~~v~~~I~~ 385 (402)
T 1azs_C 375 VFNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 138
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.71 E-value=3.1e-18 Score=155.87 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=105.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++|.+..+...+.+++...+ ...+.+++ ...+.+|||||++.|..++...+..+
T Consensus 14 ~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~a---------------- 76 (537)
T 3izy_P 14 DHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVT---------------- 76 (537)
T ss_dssp TTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSB----------------
T ss_pred CCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccC----------------
Confidence 7999999999998877655666664433 23333321 23688999999999999888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|+|+++........ ++..+.. .++|+++|+||+|+....
T Consensus 77 --------------------------------D~vILVVDa~dg~~~qt~e--~l~~~~~--~~vPiIVViNKiDl~~~~ 120 (537)
T 3izy_P 77 --------------------------------DIVILVVAADDGVMKQTVE--SIQHAKD--AHVPIVLAINKCDKAEAD 120 (537)
T ss_dssp --------------------------------SSCEEECBSSSCCCHHHHH--HHHHHHT--TTCCEEECCBSGGGTTTS
T ss_pred --------------------------------CEEEEEEECCCCccHHHHH--HHHHHHH--cCCcEEEEEecccccccc
Confidence 9999999999876665443 2333333 368999999999997532
Q ss_pred HHHHHHhhccCccccHHHHHHH---HHHh-CCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSM---AKEI-GAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~---~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. ..+. .+...+ +..+ +..+++++||++|.|++++|+.+...+...
T Consensus 121 ~----------~~v~-~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 121 P----------EKVK-KELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEML 169 (537)
T ss_dssp C----------CSSS-SHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred h----------HHHH-HHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcc
Confidence 1 0111 111111 1112 125899999999999999999999876543
No 139
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.70 E-value=9.8e-18 Score=143.96 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=99.2
Q ss_pred EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEE
Q psy8274 38 PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 117 (228)
.+.+++||++||+.++.+|..+|+++ +++|+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~------------------------------------------------~~iIfV 197 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENV------------------------------------------------TSIMFL 197 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSC------------------------------------------------SEEEEE
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCC------------------------------------------------CEEEEE
Confidence 47899999999999999999999999 999999
Q ss_pred EecC----------ChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCchH----HHHHHhhccCccccHHHHHHH
Q psy8274 118 FSLV----------NPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDDKE----TIEKLKEKKLAPITYPQGLSM 181 (228)
Q Consensus 118 ~Dvt----------~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~v~~~~~~~~ 181 (228)
||++ +..+|.... .|+..+.+.. .++|++|++||+|+...+- ...-+.......++.+++..+
T Consensus 198 ~dls~ydq~l~d~~~~nr~~es~-~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~f 276 (327)
T 3ohm_A 198 VALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF 276 (327)
T ss_dssp EEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHH
T ss_pred EECccccccccccccHhHHHHHH-HHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHH
Confidence 9665 677788777 6776665432 5799999999999875320 000011111224788889888
Q ss_pred HH----------HhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 182 AK----------EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 182 ~~----------~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+. ..+ +.++++||+++.||+.+|..+.+.|++..
T Consensus 277 i~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 277 ILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 54 345 57899999999999999999999998654
No 140
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.69 E-value=5.5e-17 Score=141.33 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=99.4
Q ss_pred CCCCCceeeeccce----------eEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcccccccc
Q psy8274 17 PGEYIPTVFDNYSA----------NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKG 86 (228)
Q Consensus 17 ~~~~~~t~~~~~~~----------~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (228)
.+.|.||..+.+.. .+.++ .+.+.+|||+|++.++..|..+|+++
T Consensus 171 ~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~----------------------- 225 (362)
T 1zcb_A 171 VPDYIPSQQDILLARRPTKGIHEYDFEIK--NVPFKMVDVGGQRSERKRWFECFDSV----------------------- 225 (362)
T ss_dssp STTCCCCHHHHHHCCCCCSSEEEEEEEET--TEEEEEEEECC-------CTTSCTTC-----------------------
T ss_pred cCCCCCChhhhhhccCCccceEEEEeeeC--CeEEEEEeccchhhhhhhHHHHhCCC-----------------------
Confidence 44677776544322 23333 37899999999999999999999999
Q ss_pred chhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC----------hhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCC
Q psy8274 87 LKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN----------PASFENVRAKWYPEVRHH--CPSTPIILVGTKLD 154 (228)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~D 154 (228)
+++|||||+++ ..+|.... .|+..+.+. ..++|++|++||+|
T Consensus 226 -------------------------~~iIfv~dls~~dq~l~ed~~~n~~~es~-~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 226 -------------------------TSILFLVSSSEFDQVLMEDRQTNRLTESL-NIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp -------------------------CEEEEEEETTCTTCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred -------------------------CEEEEEEECccccccccccccccHHHHHH-HHHHHHhcchhhCCCCEEEEEEChh
Confidence 99999999999 78999988 777777654 35799999999999
Q ss_pred CCCchHH---HH-HHhhccCccccHHHHHHHHH-----------HhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKET---IE-KLKEKKLAPITYPQGLSMAK-----------EIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~---~~-~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+....-. .. -+.......++.+++..++. ..+ +.++++||+++.||+++|.++.+.+++
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 8643100 00 00000001266778887762 234 478999999999999999999998864
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=3.5e-18 Score=152.38 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=84.7
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccc--------cCCCCccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD--------RLRPLSYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~~~~~~~~~ 70 (228)
|||||||+|+|++..+. .++..+..+.....+.+++ ..+.+|||+|++... ..+..++..+
T Consensus 13 nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a------- 83 (436)
T 2hjg_A 13 NVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA------- 83 (436)
T ss_dssp TSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHHHC-------
T ss_pred CCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC-------
Confidence 79999999999987653 2222232332333333333 578999999986211 1111111111
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
|++++|+|++++.++.+. .+...+++ .+.|++||+
T Consensus 84 -----------------------------------------d~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~ 118 (436)
T 2hjg_A 84 -----------------------------------------DVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAV 118 (436)
T ss_dssp -----------------------------------------SEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEE
T ss_pred -----------------------------------------CEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEE
Confidence 999999999998777653 34444443 378999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
||+|+..... . ...+. .+|+.+++++||++|.|++++|+++.+.+..
T Consensus 119 NK~D~~~~~~----------~------~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 119 NKLDNTEMRA----------N------IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ECCCC---------------C------CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred ECccCccchh----------h------HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 9999875321 0 01122 3454579999999999999999999998864
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.68 E-value=7.8e-17 Score=144.57 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=94.6
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++..+ ...+.+|..+.....+.+++. .+.+|||+|...+........-..
T Consensus 234 nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~--------------- 296 (462)
T 3geh_A 234 NVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVER--------------- 296 (462)
T ss_dssp TSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC---------------------------------
T ss_pred CCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHH---------------
Confidence 7999999999997643 444445555666677778884 568999999865443222110000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+-.....+|++++|||++++.+.... .|+..+. ..|+++|+||+|+...
T Consensus 297 -------------------------~~~~~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 297 -------------------------SRQAANTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEK 345 (462)
T ss_dssp ---------------------------CCCCSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCG
T ss_pred -------------------------HhhhhhcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcc
Confidence 00011222999999999998877663 5665553 3799999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.. +. ....+. .+ .+++++||++|.|++++|+++.+.+....
T Consensus 346 ~~------------~~--~~~~~~--~~-~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 346 QL------------IT--SLEYPE--NI-TQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp GG------------ST--TCCCCT--TC-CCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred hh------------hH--HHHHhc--cC-CcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 32 11 011111 23 58999999999999999999999887654
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.68 E-value=9.9e-17 Score=141.65 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=85.1
Q ss_pred EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEE
Q psy8274 38 PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 117 (228)
...+.+|||||++.|.......+..+ |++++|
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~------------------------------------------------D~~ilV 105 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALM------------------------------------------------DGAILV 105 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTC------------------------------------------------SEEEEE
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhC------------------------------------------------CEEEEE
Confidence 36899999999988766555445555 999999
Q ss_pred EecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC--CceEEEecc
Q psy8274 118 FSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG--AVKYLECSA 195 (228)
Q Consensus 118 ~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~evSa 195 (228)
+|++++.++.... .|+..+.... ..|+++|+||+|+.+.....+ ..++...+....+ ..+++++||
T Consensus 106 vda~~~~~~~qt~-~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~----------~~~~i~~~l~~~~~~~~~ii~vSA 173 (403)
T 3sjy_A 106 VAANEPFPQPQTR-EHFVALGIIG-VKNLIIVQNKVDVVSKEEALS----------QYRQIKQFTKGTWAENVPIIPVSA 173 (403)
T ss_dssp EETTSCSSCHHHH-HHHHHHHHHT-CCCEEEEEECGGGSCHHHHHH----------HHHHHHHHHTTSTTTTCCEEECBT
T ss_pred EECCCCCCcHHHH-HHHHHHHHcC-CCCEEEEEECccccchHHHHH----------HHHHHHHHHHhhCCCCCEEEEEEC
Confidence 9999987666665 5665555442 358999999999987542111 1122233332221 258999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCC
Q psy8274 196 LTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 196 ~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
++|.|++++|+.+.+.+..+..
T Consensus 174 ~~g~gi~~L~~~l~~~l~~~~~ 195 (403)
T 3sjy_A 174 LHKINIDSLIEGIEEYIKTPYR 195 (403)
T ss_dssp TTTBSHHHHHHHHHHHSCCCCC
T ss_pred CCCcChHHHHHHHHHhCCCCCC
Confidence 9999999999999987765443
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.68 E-value=2.8e-16 Score=140.25 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=95.3
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCC---CccccccchhHHhhcchh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP---LSYPQTGLSMAKEIGAVK 75 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (228)
|||||||+|++++... ...+..|..+.....+.++|. .+.+|||+|......... ..+... ....++.
T Consensus 190 gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~-----~~~~~i~ 262 (439)
T 1mky_A 190 NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY-----RVVDSIE 262 (439)
T ss_dssp TSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH-----HHHHHHH
T ss_pred CCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH-----HHHHHHh
Confidence 7999999999998764 344455555666677888886 568899999865443321 011000 0000000
Q ss_pred hhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCC
Q psy8274 76 YLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDL 155 (228)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 155 (228)
.+|++++|+|++++.+.... .+...+... +.|+++|+||+|+
T Consensus 263 ----------------------------------~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl 304 (439)
T 1mky_A 263 ----------------------------------KADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDL 304 (439)
T ss_dssp ----------------------------------HCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGG
T ss_pred ----------------------------------hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccC
Confidence 01999999999988777653 344444443 7899999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHH-HHHHh---CCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLS-MAKEI---GAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~---~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.+... .+.++... +.+.+ +..+++++||++|.||+++|+.+.+.+.
T Consensus 305 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 305 VVHRE------------KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp STTGG------------GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCchh------------hHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 76421 22222222 22222 2358999999999999999999987654
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=3e-16 Score=138.77 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=89.3
Q ss_pred CCChhhhHHhhhhC---CCCCCCCc--eeeeccce-eEEE-------------c--C----eEEeeeeeeCCCCcccccC
Q psy8274 1 AVGKTCLLISYTTN---AFPGEYIP--TVFDNYSA-NVMV-------------D--G----KPINLGLWDTAGQEDYDRL 55 (228)
Q Consensus 1 gvGKTsli~~~~~~---~~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~~~i~D~~g~~~~~~~ 55 (228)
++|||||+++|++. .+..++.+ |+...|.. .+.. + + ....+.+||+||++.|...
T Consensus 18 d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~ 97 (408)
T 1s0u_A 18 DHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMAT 97 (408)
T ss_dssp TSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHH
Confidence 68999999999843 34444444 44322221 1111 1 1 1368999999999877543
Q ss_pred CCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC----hhhHHHHHH
Q psy8274 56 RPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN----PASFENVRA 131 (228)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~----~~s~~~~~~ 131 (228)
.......+ |++++|+|+++ +.+++.+.
T Consensus 98 ~~~~~~~~------------------------------------------------D~~ilVvda~~g~~~~qt~e~l~- 128 (408)
T 1s0u_A 98 MLSGASLM------------------------------------------------DGAILVIAANEPCPQPQTKEHLM- 128 (408)
T ss_dssp HHTTCSCC------------------------------------------------SEEEEEEETTSCSSCHHHHHHHH-
T ss_pred HHHhHhhC------------------------------------------------CEEEEEEECCCCCCCchhHHHHH-
Confidence 33333333 99999999995 45555543
Q ss_pred hhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--CCceEEEecccCCCCHHHHHHHHH
Q psy8274 132 KWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI--GAVKYLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 132 ~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~evSa~~~~~v~~lf~~l~ 209 (228)
.+... ...|+++|+||+|+..... .....++...+++.. ...+++++||++|.|++++++.+.
T Consensus 129 ----~~~~l-~~~~iivv~NK~Dl~~~~~----------~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 129 ----ALEIL-GIDKIIIVQNKIDLVDEKQ----------AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp ----HHHHT-TCCCEEEEEECTTSSCTTT----------TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred ----HHHHc-CCCeEEEEEEccCCCCHHH----------HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 22222 2358999999999986421 112334555565542 125899999999999999999999
Q ss_pred HHhcCCC
Q psy8274 210 RAVLCPV 216 (228)
Q Consensus 210 ~~i~~~~ 216 (228)
..+..+.
T Consensus 194 ~~i~~~~ 200 (408)
T 1s0u_A 194 DFIPTPK 200 (408)
T ss_dssp HHSCCCC
T ss_pred HhCCCCc
Confidence 8776543
No 146
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.67 E-value=1.7e-16 Score=135.03 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=94.3
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCc-c--------cccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQE-D--------YDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~~~~~~~~~~~~~ 69 (228)
|||||||++++++..+.. ....|........+..+ ...+.+|||||.. . +.......+..+
T Consensus 18 nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~------ 89 (301)
T 1ega_A 18 NVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV------ 89 (301)
T ss_dssp SSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE------
T ss_pred CCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcC------
Confidence 799999999999876531 11112221111222223 3578899999987 2 222233334444
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILV 149 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv 149 (228)
|++++|+|+++ +....+.+...+.. .+.|+++|
T Consensus 90 ------------------------------------------D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilv 122 (301)
T 1ega_A 90 ------------------------------------------ELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVILA 122 (301)
T ss_dssp ------------------------------------------EEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEEE
T ss_pred ------------------------------------------CEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEEE
Confidence 99999999977 33333122333332 36899999
Q ss_pred EeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 150 GTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+||+|+..... ...+....+.+.+++..++++||+++.|++++++.+...+.
T Consensus 123 lNK~D~~~~~~------------~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 123 VNKVDNVQEKA------------DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp EESTTTCCCHH------------HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred EECcccCccHH------------HHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 99999986211 12233455656667557999999999999999999988664
No 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.67 E-value=2.2e-16 Score=142.54 Aligned_cols=146 Identities=22% Similarity=0.142 Sum_probs=95.7
Q ss_pred CCChhhhHHhhhhCC-------CCCCCCceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhc
Q psy8274 1 AVGKTCLLISYTTNA-------FPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIG 72 (228)
Q Consensus 1 gvGKTsli~~~~~~~-------~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 72 (228)
|+|||||+++|++.. +..+..+.+. +.....+.+++ ..+.+||+||++.|.......+..+
T Consensus 29 d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~a--------- 97 (482)
T 1wb1_A 29 DHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAADII--------- 97 (482)
T ss_dssp TSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTTSC---------
T ss_pred CChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHhhC---------
Confidence 689999999999766 2223332221 11122344455 6789999999987755444444444
Q ss_pred chhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEE
Q psy8274 73 AVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTPIILV 149 (228)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv 149 (228)
|++++|+|+++ +.+++.+. .+... ++|+++|
T Consensus 98 ---------------------------------------D~~ilVvda~~g~~~qt~e~l~-----~~~~~--~ip~Ivv 131 (482)
T 1wb1_A 98 ---------------------------------------DLALIVVDAKEGPKTQTGEHML-----ILDHF--NIPIIVV 131 (482)
T ss_dssp ---------------------------------------CEEEEEEETTTCSCHHHHHHHH-----HHHHT--TCCBCEE
T ss_pred ---------------------------------------CEEEEEEecCCCccHHHHHHHH-----HHHHc--CCCEEEE
Confidence 99999999998 55555442 33333 6888999
Q ss_pred EeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-C--CceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 150 GTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-G--AVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~--~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+||+|+.+.... ....++...+++.. + ..+++++||++|.|++++++.+...+.
T Consensus 132 iNK~Dl~~~~~~----------~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 132 ITKSDNAGTEEI----------KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECTTSSCHHHH----------HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EECCCcccchhH----------HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 999999864221 11233455555544 2 258999999999999999999999774
No 148
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.66 E-value=4.9e-17 Score=140.17 Aligned_cols=129 Identities=18% Similarity=0.146 Sum_probs=97.8
Q ss_pred CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEE
Q psy8274 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115 (228)
Q Consensus 36 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi 115 (228)
...+.+++||++||+.++.+|..+|+++ +++|
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a------------------------------------------------~~iI 189 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDV------------------------------------------------DCAI 189 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSC------------------------------------------------SEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccC------------------------------------------------CEEE
Confidence 3457899999999999999999999999 9999
Q ss_pred EEEecC----------ChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCchHHHHH----HhhccCccccHHHHH
Q psy8274 116 ICFSLV----------NPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEK----LKEKKLAPITYPQGL 179 (228)
Q Consensus 116 ~v~Dvt----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~v~~~~~~ 179 (228)
+|||++ +..+|.... .|+..+.+. ..++|++|++||+|+...+-.... +..... ..+.+++.
T Consensus 190 fV~diS~ydq~l~e~~~~nr~~es~-~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g-~~~~e~a~ 267 (340)
T 4fid_A 190 FVTSLAEYDMKLYEDGNTSRLTESI-AVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTG-GDNAVMGA 267 (340)
T ss_dssp EEEEGGGTTCBCC--CCSBHHHHHH-HHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCC-TTCHHHHH
T ss_pred EEEECCccccccccccccchHHHHH-HHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcC-CCCHHHHH
Confidence 999999 788898887 677666654 257999999999998753210000 000111 12567776
Q ss_pred HHHHHhC--------------------------CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 180 SMAKEIG--------------------------AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 180 ~~~~~~~--------------------------~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.++.... .+.++++||++..||+.+|..+.+.|++
T Consensus 268 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 268 QYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 6654321 2578999999999999999999998875
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.66 E-value=3.1e-16 Score=144.58 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=98.0
Q ss_pred CCChhhhHHhhhhCC--CCCC-CCcee----------eecc-ce--eEEE---cCeEEeeeeeeCCCCcccccCCCCccc
Q psy8274 1 AVGKTCLLISYTTNA--FPGE-YIPTV----------FDNY-SA--NVMV---DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~-~~~t~----------~~~~-~~--~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~ 61 (228)
|+|||||+++|+... +... ...+. +.+. .. .+.+ ++..+.+.+|||||+.+|...+...+.
T Consensus 14 d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~ 93 (599)
T 3cb4_D 14 DHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLA 93 (599)
T ss_dssp ----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHH
Confidence 689999999998632 2110 00111 1111 11 1222 566789999999999887655444444
Q ss_pred cccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC
Q psy8274 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~ 141 (228)
.+ |++++|+|++++.++.... .|...+.
T Consensus 94 ~a------------------------------------------------D~aILVVDa~~gv~~qt~~-~~~~~~~--- 121 (599)
T 3cb4_D 94 AC------------------------------------------------EGALLVVDAGQGVEAQTLA-NCYTAME--- 121 (599)
T ss_dssp HC------------------------------------------------SEEEEEEETTTCCCTHHHH-HHHHHHH---
T ss_pred HC------------------------------------------------CEEEEEEECCCCCCHHHHH-HHHHHHH---
Confidence 44 9999999999988877765 6655443
Q ss_pred CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 142 PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.+.|+++|+||+|+.... .......+.+.+++ ..++++||++|.|++++|+++.+.+..+..
T Consensus 122 ~~ipiIvViNKiDl~~a~--------------~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~ 185 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPAAD--------------PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG 185 (599)
T ss_dssp TTCEEEEEEECTTSTTCC--------------HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred CCCCEEEeeeccCccccc--------------HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence 268999999999998642 11223445555563 248999999999999999999998876543
No 150
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.2e-16 Score=125.92 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=73.9
Q ss_pred CCChhhhHHhhhhCCCCC---CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|.++.+.. .+.+++...+ ..+.+.+||++|+..+...+..++... .
T Consensus 58 g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~-------~------ 116 (193)
T 2ged_A 58 NSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTR-------A------ 116 (193)
T ss_dssp TSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHH-------G------
T ss_pred CCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhh-------c------
Confidence 799999999999987643 2233332222 446889999999988876655544330 0
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC-ChhhHHHHHHhhHHHHhhh-----CCCCCEEEEEe
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV-NPASFENVRAKWYPEVRHH-----CPSTPIILVGT 151 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt-~~~s~~~~~~~~~~~l~~~-----~~~~piilv~n 151 (228)
..+|++++|||++ ++.+|..+. .|+..+... ..+.|+++|+|
T Consensus 117 -------------------------------~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~n 164 (193)
T 2ged_A 117 -------------------------------KFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACN 164 (193)
T ss_dssp -------------------------------GGEEEEEEEEETTCCHHHHHHHH-HHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred -------------------------------ccCCEEEEEEECCCCchhHHHHH-HHHHHHHhhhhhccccCCCEEEEEE
Confidence 0019999999999 999999987 676665542 24799999999
Q ss_pred CCCCCCch
Q psy8274 152 KLDLRDDK 159 (228)
Q Consensus 152 K~Dl~~~~ 159 (228)
|+|+....
T Consensus 165 K~Dl~~~~ 172 (193)
T 2ged_A 165 KSELFTAR 172 (193)
T ss_dssp CTTSTTCC
T ss_pred chHhcCCC
Confidence 99998653
No 151
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.9e-17 Score=144.34 Aligned_cols=170 Identities=17% Similarity=0.188 Sum_probs=82.0
Q ss_pred CCChhhhHHhhhh-CCCCCCCC--------ceeeecc-ceeEEEcCeEEeeeeeeCCCCcc-------cccCCCCccccc
Q psy8274 1 AVGKTCLLISYTT-NAFPGEYI--------PTVFDNY-SANVMVDGKPINLGLWDTAGQED-------YDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~-~~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 63 (228)
|+|||||++++.. +.+...+. +|++..+ ...+..++..+.+.+|||+|+.. +..++.
T Consensus 47 g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~------ 120 (361)
T 2qag_A 47 GLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIIS------ 120 (361)
T ss_dssp TSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHH------
T ss_pred CCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHH------
Confidence 7999999999764 44443332 4443322 33445567778999999999843 332222
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC-hhhHHHHHHhhHHHHhhhCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN-PASFENVRAKWYPEVRHHCP 142 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~-~~s~~~~~~~~~~~l~~~~~ 142 (228)
.+ .+.|....+...+..-. .....++.+++|++++ ..++..+...|+..+ ..
T Consensus 121 --~i--------------------~~~~~~yl~~~~~~~r~--~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~ 173 (361)
T 2qag_A 121 --YI--------------------DEQFERYLHDESGLNRR--HIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HN 173 (361)
T ss_dssp --HH--------------------HHHHHHHHHHHTCSCCC---CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS
T ss_pred --HH--------------------HHHHHHHHHHhhhhccc--cccCCceEEEEEEEecCCCCcchhHHHHHHHh---cc
Confidence 00 00000000110000000 0111134456677765 566766653455444 35
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccH--HHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITY--PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
++|+|+|+||+|+....+ +.. +++..+++.++ ++++++||+++.+ ++.|.++.+.+....|
T Consensus 174 ~~piIlV~NK~Dl~~~~e------------v~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 174 KVNIVPVIAKADTLTLKE------------RERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp -SCEEEEEECCSSSCHHH------------HHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTCS
T ss_pred CCCEEEEEECCCCCCHHH------------HHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 799999999999987543 222 45667777778 4899999999999 8888888888765544
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.64 E-value=5.8e-16 Score=142.61 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=87.0
Q ss_pred cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceE
Q psy8274 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVF 114 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~v 114 (228)
++..+.+.+|||||+.+|.......+..+ |++
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~a------------------------------------------------D~a 100 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAAC------------------------------------------------EGA 100 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTC------------------------------------------------SEE
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhC------------------------------------------------CEE
Confidence 56678999999999998765444334444 999
Q ss_pred EEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ceEEE
Q psy8274 115 QICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VKYLE 192 (228)
Q Consensus 115 i~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e 192 (228)
++|+|++++.++.... .|..... .+.|+++|+||+|+..... ......+.+.+++ ..+++
T Consensus 101 ILVVDa~~gv~~qt~~-~~~~a~~---~~ipiIvviNKiDl~~a~~--------------~~v~~el~~~lg~~~~~vi~ 162 (600)
T 2ywe_A 101 LLLIDASQGIEAQTVA-NFWKAVE---QDLVIIPVINKIDLPSADV--------------DRVKKQIEEVLGLDPEEAIL 162 (600)
T ss_dssp EEEEETTTBCCHHHHH-HHHHHHH---TTCEEEEEEECTTSTTCCH--------------HHHHHHHHHTSCCCGGGCEE
T ss_pred EEEEECCCCccHHHHH-HHHHHHH---CCCCEEEEEeccCccccCH--------------HHHHHHHHHhhCCCcccEEE
Confidence 9999999988887776 6655443 2689999999999976421 1123344455553 24899
Q ss_pred ecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 193 CSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 193 vSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+||++|.||+++|+++++.+..+.
T Consensus 163 vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 163 ASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred EEeecCCCchHHHHHHHHhccccc
Confidence 999999999999999999887654
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.64 E-value=9e-16 Score=135.77 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=60.8
Q ss_pred ceEEEEEecCC----hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVN----PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~----~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|++++|+|+++ +.+++.+. .+... ...|+++|+||+|+....... ...++...+.+..
T Consensus 108 D~~ilVvda~~g~~~~qt~e~l~-----~~~~~-~~~~iivviNK~Dl~~~~~~~----------~~~~~i~~~l~~~~~ 171 (410)
T 1kk1_A 108 DGAILVIAANEPCPRPQTREHLM-----ALQII-GQKNIIIAQNKIELVDKEKAL----------ENYRQIKEFIEGTVA 171 (410)
T ss_dssp SEEEEEEETTSCSSCHHHHHHHH-----HHHHH-TCCCEEEEEECGGGSCHHHHH----------HHHHHHHHHHTTSTT
T ss_pred CEEEEEEECCCCCCChhHHHHHH-----HHHHc-CCCcEEEEEECccCCCHHHHH----------HHHHHHHHHHHhcCc
Confidence 99999999995 44555443 22222 235899999999998753211 1223344454431
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
...+++++||++|.|++++++.+...+..+.
T Consensus 172 ~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 172 ENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp TTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 2258999999999999999999998776543
No 154
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.63 E-value=7.9e-16 Score=127.61 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=93.5
Q ss_pred CCChhhhHHhhhhCC-CCCCCCce-e-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPT-V-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t-~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|++.. +...+.++ + .......+..++ ..+.+|||||+..+......+. +.+.
T Consensus 32 g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~--------~~i~----- 96 (260)
T 2xtp_A 32 GTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALY--------KEVQ----- 96 (260)
T ss_dssp TSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHH--------HHHH-----
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHH--------HHHH-----
Confidence 799999999999876 55444444 2 222334455555 4688999999876543211100 0000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEe-CC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGT-KL 153 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~n-K~ 153 (228)
...... ...+|++++|||+++...... .+...+..... ..|+++|.| |+
T Consensus 97 ---------------~~~~~~---------~~~~d~il~V~d~~~~~~~~~---~~~~~l~~~~~~~~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 97 ---------------RCYLLS---------APGPHVLLLVTQLGRYTSQDQ---QAAQRVKEIFGEDAMGHTIVLFTHKE 149 (260)
T ss_dssp ---------------HHHHHH---------TTCCSEEEEEEETTCCCHHHH---HHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred ---------------HHHHhc---------CCCCcEEEEEEeCCCCCHHHH---HHHHHHHHHhCchhhccEEEEEEccc
Confidence 000000 012299999999986222211 22333333321 345555555 99
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce--E--EEecccCCCCHHHHHHHHHHHhcC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK--Y--LECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~--~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
|+.... ..+. ... ....++..+++.++... + +++||+++.|++++|.++.+.+..
T Consensus 150 Dl~~~~-~~~~-i~~----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 150 DLNGGS-LMDY-MHD----SDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGTTCC-HHHH-HHH----CCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcc-HHHH-HHh----cchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 998531 1110 000 11134555666665211 2 789999999999999999987754
No 155
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.62 E-value=1.2e-16 Score=144.28 Aligned_cols=146 Identities=16% Similarity=0.279 Sum_probs=95.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++|....+.....+.+.... ...+..++ ..+.+|||||++.|..++...+..+
T Consensus 14 d~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~a---------------- 75 (501)
T 1zo1_I 14 DHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQAT---------------- 75 (501)
T ss_dssp TSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSC----------------
T ss_pred CCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhC----------------
Confidence 6899999999997766544333332111 22233344 4688999999999988887777766
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+.
T Consensus 76 --------------------------------D~aILVVda~~g~~~qT~e~l~-----~~~~--~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 76 --------------------------------DIVVLVVAADDGVMPQTIEAIQ-----HAKA--AQVPVVVAVNKIDKP 116 (501)
T ss_dssp --------------------------------SSEEEEEETTTBSCTTTHHHHH-----HHHH--TTCCEEEEEECSSSS
T ss_pred --------------------------------CEEEEEeecccCccHHHHHHHH-----HHHh--cCceEEEEEEecccc
Confidence 99999999988 44444332 2222 368999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
..... + . ...... ...+++.++ ..+++++||++|.|++++|+++...
T Consensus 117 ~~~~~-~-v----~~~l~~--~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 117 EADPD-R-V----KNELSQ--YGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTCCC-C-T----TCCCCC--CCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred ccCHH-H-H----HHHHHH--hhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 53110 0 0 000000 000112222 2589999999999999999998764
No 156
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.62 E-value=1.1e-15 Score=134.87 Aligned_cols=154 Identities=18% Similarity=0.116 Sum_probs=99.5
Q ss_pred CCChhhhHHhhhhC--------CCCCCC--C-----ceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCcccccc
Q psy8274 1 AVGKTCLLISYTTN--------AFPGEY--I-----PTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTG 64 (228)
Q Consensus 1 gvGKTsli~~~~~~--------~~~~~~--~-----~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 64 (228)
|+|||||+++|+.. .|.... . .+.+.+. .....++.....+.+|||||+++|.......+..+
T Consensus 21 ~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~a- 99 (405)
T 2c78_A 21 DHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQM- 99 (405)
T ss_dssp TSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHC-
Confidence 69999999999973 221100 0 0111111 12233444456789999999998754444444444
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPST 144 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~ 144 (228)
|++|+|+|++++...... .|+..+... ++
T Consensus 100 -----------------------------------------------D~~ilVvda~~g~~~qt~--~~l~~~~~~--~i 128 (405)
T 2c78_A 100 -----------------------------------------------DGAILVVSAADGPMPQTR--EHILLARQV--GV 128 (405)
T ss_dssp -----------------------------------------------SSEEEEEETTTCCCHHHH--HHHHHHHHT--TC
T ss_pred -----------------------------------------------CEEEEEEECCCCCcHHHH--HHHHHHHHc--CC
Confidence 999999999987654432 455555544 67
Q ss_pred C-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----ceEEEecccCCCC------------------H
Q psy8274 145 P-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA----VKYLECSALTQKG------------------L 201 (228)
Q Consensus 145 p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~evSa~~~~~------------------v 201 (228)
| +++|+||+|+.......+ ...++...+++.+++ .+++++||++|.| +
T Consensus 129 p~iivviNK~Dl~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i 199 (405)
T 2c78_A 129 PYIVVFMNKVDMVDDPELLD---------LVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKI 199 (405)
T ss_dssp CCEEEEEECGGGCCCHHHHH---------HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHH
T ss_pred CEEEEEEECccccCcHHHHH---------HHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccH
Confidence 8 889999999985322111 122355667777764 5899999999987 7
Q ss_pred HHHHHHHHHHhcCC
Q psy8274 202 KTVFDEAIRAVLCP 215 (228)
Q Consensus 202 ~~lf~~l~~~i~~~ 215 (228)
.++++.+...+..+
T Consensus 200 ~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 200 WELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhcCCC
Confidence 78888887766543
No 157
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.61 E-value=2.5e-15 Score=131.04 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=97.7
Q ss_pred CCChhhhHHhhhhCCCCC-CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+|++++..+.. .+..+..+.....+.+++. .+.+|||+|.....+ ... +. .
T Consensus 189 naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp--~~l-------ve-~--------- 247 (364)
T 2qtf_A 189 NSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIP--PQI-------VD-A--------- 247 (364)
T ss_dssp TSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCC--GGG-------HH-H---------
T ss_pred CCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCC--HHH-------HH-H---------
Confidence 799999999999876532 2333334455667788884 568999999632110 000 00 0
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChh--hHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPA--SFENVRAKWYPEVRHHC-PSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~--s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~ 156 (228)
|...... ...+|++++|+|++++. +...+. .|...+.... .+.|+++|+||+|+.
T Consensus 248 -----------f~~tl~~----------~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 248 -----------FFVTLSE----------AKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp -----------HHHHHHG----------GGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred -----------HHHHHHH----------HHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 0000000 01129999999999877 555554 5666666543 478999999999987
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHh-C-CceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEI-G-AVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
..... .....+..+++.+ . ..+++++||+++.|++++++.+.+.+..+
T Consensus 306 ~~~~~-----------~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 306 NGDLY-----------KKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CSCHH-----------HHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CchHH-----------HHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 63210 0012233444555 2 13689999999999999999998877543
No 158
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.61 E-value=8.9e-16 Score=139.81 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=54.3
Q ss_pred EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEE
Q psy8274 38 PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 117 (228)
.+.+.+|||||+.+|......+++.+ |++++|
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~a------------------------------------------------D~allV 112 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLTAV------------------------------------------------DSALMV 112 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGC------------------------------------------------SEEEEE
T ss_pred CEEEEEEECCCchhHHHHHHHHHHhC------------------------------------------------CEEEEE
Confidence 46789999999998877666666666 999999
Q ss_pred EecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 118 FSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 118 ~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+|+++..+..... ++..+... ++|+++|+||+|+...
T Consensus 113 vDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 113 IDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp EETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred EeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc
Confidence 9999987777664 33444444 6899999999999753
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.61 E-value=1.8e-15 Score=133.28 Aligned_cols=151 Identities=18% Similarity=0.124 Sum_probs=98.6
Q ss_pred CCChhhhHHhhhhC-------CCCCC-----------CCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCcccc
Q psy8274 1 AVGKTCLLISYTTN-------AFPGE-----------YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62 (228)
Q Consensus 1 gvGKTsli~~~~~~-------~~~~~-----------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 62 (228)
|+|||||+++|+.. .|... .-.|+.. ....++.....+.+|||||++.|.......+..
T Consensus 13 ~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~---~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~ 89 (397)
T 1d2e_A 13 DHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA---AHVEYSTAARHYAHTDCPGHADYVKNMITGTAP 89 (397)
T ss_dssp TSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC---EEEEEECSSCEEEEEECSSHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe---eeEEeccCCeEEEEEECCChHHHHHHHHhhHhh
Confidence 68999999999964 12110 0012111 112334444678899999998876544444555
Q ss_pred ccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC
Q psy8274 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP 142 (228)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~ 142 (228)
+ |++|+|+|+++....+... .| ..+...
T Consensus 90 a------------------------------------------------D~~ilVvda~~g~~~qt~e-~l-~~~~~~-- 117 (397)
T 1d2e_A 90 L------------------------------------------------DGCILVVAANDGPMPQTRE-HL-LLARQI-- 117 (397)
T ss_dssp C------------------------------------------------SEEEEEEETTTCSCHHHHH-HH-HHHHHT--
T ss_pred C------------------------------------------------CEEEEEEECCCCCCHHHHH-HH-HHHHHc--
Confidence 5 9999999999865444332 33 344333
Q ss_pred CCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----ceEEEecccCCCC----------HHHHHHH
Q psy8274 143 STP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA----VKYLECSALTQKG----------LKTVFDE 207 (228)
Q Consensus 143 ~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~evSa~~~~~----------v~~lf~~ 207 (228)
++| +++|+||+|+....+..+ ...++...+++.+++ .+++++||++|.| +.++|+.
T Consensus 118 ~vp~iivviNK~Dl~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~ 188 (397)
T 1d2e_A 118 GVEHVVVYVNKADAVQDSEMVE---------LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDA 188 (397)
T ss_dssp TCCCEEEEEECGGGCSCHHHHH---------HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHH
T ss_pred CCCeEEEEEECcccCCCHHHHH---------HHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHH
Confidence 678 789999999985322111 123456677777764 5899999999765 8899999
Q ss_pred HHHHhcCC
Q psy8274 208 AIRAVLCP 215 (228)
Q Consensus 208 l~~~i~~~ 215 (228)
+...+..+
T Consensus 189 l~~~~p~p 196 (397)
T 1d2e_A 189 VDTYIPVP 196 (397)
T ss_dssp HHHHSCCC
T ss_pred HHHhCCCC
Confidence 98877644
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.61 E-value=4.5e-15 Score=136.83 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=95.8
Q ss_pred CCChhhhHHhhhhCCCCCCC----Cceeeeccce-------------eEEEcCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEY----IPTVFDNYSA-------------NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~----~~t~~~~~~~-------------~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||+++|++..+.... .++++..+.. .+.++.....+.+|||||++.|..++...+..+
T Consensus 15 d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~a 94 (594)
T 1g7s_A 15 DHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALA 94 (594)
T ss_dssp TSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSC
T ss_pred CCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhC
Confidence 79999999999976543211 1122221110 000001112489999999999988888777777
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHH 140 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~ 140 (228)
|++|+|||+++ +.++..+. .+...
T Consensus 95 ------------------------------------------------D~aILVvDa~~Gv~~qT~e~l~-----~l~~~ 121 (594)
T 1g7s_A 95 ------------------------------------------------DLAILIVDINEGFKPQTQEALN-----ILRMY 121 (594)
T ss_dssp ------------------------------------------------SEEEEEEETTTCCCHHHHHHHH-----HHHHT
T ss_pred ------------------------------------------------CEEEEEEECCCCccHhHHHHHH-----HHHHc
Confidence 99999999999 77776553 23333
Q ss_pred CCCCCEEEEEeCCCCCCchH------HHHHHhhccCcccc------HHHHHHHHHHhC--------------CceEEEec
Q psy8274 141 CPSTPIILVGTKLDLRDDKE------TIEKLKEKKLAPIT------YPQGLSMAKEIG--------------AVKYLECS 194 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~~~------~~~~~~~~~~~~v~------~~~~~~~~~~~~--------------~~~~~evS 194 (228)
++|+++|+||+|+..... ..+..... ...+. ..+......+.+ ..+++++|
T Consensus 122 --~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~-~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vS 198 (594)
T 1g7s_A 122 --RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ-DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPIS 198 (594)
T ss_dssp --TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECC
T ss_pred --CCeEEEEecccccccccccccCCchHHHHHHh-HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEe
Confidence 689999999999964210 00000000 00000 001111111222 24899999
Q ss_pred ccCCCCHHHHHHHHHHHhc
Q psy8274 195 ALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 195 a~~~~~v~~lf~~l~~~i~ 213 (228)
|++|.|++++++++...+.
T Consensus 199 A~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 199 AITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred ccCCCCchhHHHHHHhhcc
Confidence 9999999999999988664
No 161
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.61 E-value=2.4e-15 Score=134.18 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=72.1
Q ss_pred EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEE
Q psy8274 38 PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 117 (228)
...+.+|||||+++|.......+..+ |++++|
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~a------------------------------------------------D~~ilV 125 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQA------------------------------------------------DLAVLV 125 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhC------------------------------------------------CEEEEE
Confidence 35889999999998876555555555 999999
Q ss_pred EecCChhh---HHHHH--HhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----
Q psy8274 118 FSLVNPAS---FENVR--AKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA---- 187 (228)
Q Consensus 118 ~Dvt~~~s---~~~~~--~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---- 187 (228)
+|+++... |.... ...+..+.. .++| +++|+||+|+.......+. .....++...+++.+|+
T Consensus 126 VDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~~~~~~~------~~~i~~~~~~~l~~~g~~~~~ 197 (439)
T 3j2k_7 126 ISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTVNWSNER------YEECKEKLVPFLKKVGFNPKK 197 (439)
T ss_pred EECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcccchHHHH------HHHHHHHHHHHHHHhcccccC
Confidence 99998532 11100 011122222 2566 9999999999643111000 11223445566666653
Q ss_pred -ceEEEecccCCCCHHHHHH
Q psy8274 188 -VKYLECSALTQKGLKTVFD 206 (228)
Q Consensus 188 -~~~~evSa~~~~~v~~lf~ 206 (228)
.+++++||++|.|++++++
T Consensus 198 ~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 198 DIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CeeEEEeeccCCcccccccc
Confidence 4799999999999999654
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.60 E-value=4.1e-16 Score=139.03 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=79.9
Q ss_pred cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceE
Q psy8274 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVF 114 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~v 114 (228)
+.....+.+|||||+++|.......+..+ |++
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~a------------------------------------------------D~~ 111 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMITGASQA------------------------------------------------DAA 111 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHHHTSSCC------------------------------------------------SEE
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhhhhc------------------------------------------------CEE
Confidence 34456899999999999876655556666 999
Q ss_pred EEEEecCChhhHHHHHHhhHHHHhhhC-----CC-CCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-
Q psy8274 115 QICFSLVNPASFENVRAKWYPEVRHHC-----PS-TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA- 187 (228)
Q Consensus 115 i~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~-~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 187 (228)
|+|+|+++ .+|+.+. .|......+. .+ .|+++|+||+|+.+.....+. .....+++..+++.+++
T Consensus 112 ilVvDa~~-gsfe~~~-~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~------~~~~~~~i~~~~~~~~~~ 183 (435)
T 1jny_A 112 ILVVSAKK-GEYEAGM-SVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR------YKEIVDQVSKFMRSYGFN 183 (435)
T ss_dssp EEEEECST-THHHHHH-STTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHH------HHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCC-Ccccccc-ccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHH------HHHHHHHHHHHHHHcCCC
Confidence 99999998 7787665 4544433321 13 468999999999863100000 01223556777777763
Q ss_pred ---ceEEEecccCCCCHHHHHH
Q psy8274 188 ---VKYLECSALTQKGLKTVFD 206 (228)
Q Consensus 188 ---~~~~evSa~~~~~v~~lf~ 206 (228)
.+++++||++|.|+.+++.
T Consensus 184 ~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 184 TNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CTTCEEEECBTTTTBTTTBCCS
T ss_pred cCCceEEEeecccCcccccccc
Confidence 5799999999999986543
No 163
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.60 E-value=3.1e-15 Score=125.37 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=85.5
Q ss_pred CCChhhhHHhhhhC-CCCCCC-------Cceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhh
Q psy8274 1 AVGKTCLLISYTTN-AFPGEY-------IPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEI 71 (228)
Q Consensus 1 gvGKTsli~~~~~~-~~~~~~-------~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 71 (228)
|+|||||+|+++.. .+...+ .+|++.. +...+..++..+.+.+|||||.......... +......
T Consensus 18 g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~-~~~i~~~----- 91 (274)
T 3t5d_A 18 GLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC-WQPVIDY----- 91 (274)
T ss_dssp TSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT-THHHHHH-----
T ss_pred CCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh-HHHHHHH-----
Confidence 79999999997654 444444 4555332 3344445676789999999998654221111 1100000
Q ss_pred cchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEe
Q psy8274 72 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGT 151 (228)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~n 151 (228)
+.+-|....+.-....-....-.++|+++++.+.+.. ++......++..+.. ++|+++|+|
T Consensus 92 ---------------i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~n 152 (274)
T 3t5d_A 92 ---------------IDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIA 152 (274)
T ss_dssp ---------------HHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEES
T ss_pred ---------------HHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEe
Confidence 0001111111111111111122345889999877652 222222245555554 799999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
|+|+....+.. .............+ ++++++||+++.|+++++.++.+.+.
T Consensus 153 K~D~~~~~e~~----------~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 153 KADTLTPEECQ----------QFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp SGGGSCHHHHH----------HHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTCS
T ss_pred ccCCCCHHHHH----------HHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 99997653311 11223445555677 58999999999999999999988653
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=4e-15 Score=132.58 Aligned_cols=108 Identities=18% Similarity=0.136 Sum_probs=72.7
Q ss_pred eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEE
Q psy8274 37 KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQI 116 (228)
Q Consensus 37 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 116 (228)
....+.+|||||++.|.......+..+ |++|+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~a------------------------------------------------D~~il 133 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTC------------------------------------------------DLAII 133 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTC------------------------------------------------SEEEE
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhC------------------------------------------------CEEEE
Confidence 346789999999988765444444444 99999
Q ss_pred EEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch-HHHHHHhhccCccccHHHHHHHHHHhC--C--ceEE
Q psy8274 117 CFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK-ETIEKLKEKKLAPITYPQGLSMAKEIG--A--VKYL 191 (228)
Q Consensus 117 v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~--~--~~~~ 191 (228)
|+|++++...... .++..+... ...|+++|+||+|+.+.. +..+ ...++...+++.++ . .+++
T Consensus 134 VvDa~~g~~~qt~--~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~---------~i~~~~~~~~~~~g~~~~~~~~i 201 (434)
T 1zun_B 134 LVDARYGVQTQTR--RHSYIASLL-GIKHIVVAINKMDLNGFDERVFE---------SIKADYLKFAEGIAFKPTTMAFV 201 (434)
T ss_dssp EEETTTCSCHHHH--HHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHH---------HHHHHHHHHHHTTTCCCSEEEEE
T ss_pred EEECCCCCcHHHH--HHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHH---------HHHHHHHHHHHHhCCCccCceEE
Confidence 9999986543332 344344333 223699999999998631 1111 12345666777776 1 5799
Q ss_pred EecccCCCCHHHH
Q psy8274 192 ECSALTQKGLKTV 204 (228)
Q Consensus 192 evSa~~~~~v~~l 204 (228)
++||++|.|++++
T Consensus 202 ~vSA~~g~gi~~~ 214 (434)
T 1zun_B 202 PMSALKGDNVVNK 214 (434)
T ss_dssp ECCTTTCTTTSSC
T ss_pred EEeccCCCCcccc
Confidence 9999999999984
No 165
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.58 E-value=6.3e-16 Score=138.56 Aligned_cols=143 Identities=14% Similarity=0.129 Sum_probs=83.2
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc--------cccCCCCccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED--------YDRLRPLSYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~~~~~~~~ 70 (228)
|||||||+|+|++..+. .++..+..+.. ...++.....+.+|||+|... +......++..+
T Consensus 33 nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~--~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a------- 103 (456)
T 4dcu_A 33 NVGKSTIFNRIAGERISIVEDTPGVTRDRI--YSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA------- 103 (456)
T ss_dssp SSSHHHHHHHHEEEEEC-----------CE--EEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC-------
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCcceeEE--EEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC-------
Confidence 79999999999987653 12222222222 223333446889999999542 111111112222
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
|++|+|+|..+..+.... .+...+++ .+.|++||+
T Consensus 104 -----------------------------------------d~il~VvD~~~~~~~~d~--~l~~~l~~--~~~pvilV~ 138 (456)
T 4dcu_A 104 -----------------------------------------DVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAV 138 (456)
T ss_dssp -----------------------------------------SEEEEEEESSSCSCHHHH--HHHHHHTT--CCSCEEEEE
T ss_pred -----------------------------------------CEEEEEEeCCCCCChHHH--HHHHHHHH--cCCCEEEEE
Confidence 999999998875544432 34444444 379999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
||+|+..... +...+ ..+|+...+++||++|.|+.++|+++.+.+..
T Consensus 139 NK~D~~~~~~----------------~~~e~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 139 NKLDNTEMRA----------------NIYDF-YSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp ECC-------------------------CCS-GGGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred ECccchhhhh----------------hHHHH-HHcCCCceEEeecccccchHHHHHHHHhhccc
Confidence 9999875311 00111 12344467899999999999999999987754
No 166
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.57 E-value=1.5e-15 Score=137.09 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=70.1
Q ss_pred EEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCc
Q psy8274 33 MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCD 112 (228)
Q Consensus 33 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d 112 (228)
.++.....+.+|||||++.|.......+..+ |
T Consensus 105 ~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~a------------------------------------------------D 136 (483)
T 3p26_A 105 HFSTHRANFTIVDAPGHRDFVPNAIMGISQA------------------------------------------------D 136 (483)
T ss_dssp EEECSSCEEEEECCCCCGGGHHHHHHHHTTC------------------------------------------------S
T ss_pred EEecCCceEEEEECCCcHHHHHHHHHhhhhC------------------------------------------------C
Confidence 3444557899999999998876665555655 9
Q ss_pred eEEEEEecCChhhHHHH-----HHhhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHHHHhC
Q psy8274 113 VFQICFSLVNPASFENV-----RAKWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMAKEIG 186 (228)
Q Consensus 113 ~vi~v~Dvt~~~s~~~~-----~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 186 (228)
++|+|+|++++.++..+ ....+..+ ......|++||+||+|+.+... ..+ ...++...+...+|
T Consensus 137 ~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~~~~~iIvviNK~Dl~~~~~~~~~---------~i~~~~~~~l~~~g 206 (483)
T 3p26_A 137 MAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSLGIHNLIIAMNKMDNVDWSQQRFE---------EIKSKLLPYLVDIG 206 (483)
T ss_dssp EEEEEEECCC------CCCCHHHHHHHHHH-HHTTCCCEEEEEECGGGGTTCHHHHH---------HHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCccccccchhhhHHHHHHHH-HHcCCCcEEEEEECcCcccchHHHHH---------HHHHHHHHHHHHcC
Confidence 99999999997654321 10111122 2223357999999999986321 111 11223444555554
Q ss_pred C----ceEEEecccCCCCHHH
Q psy8274 187 A----VKYLECSALTQKGLKT 203 (228)
Q Consensus 187 ~----~~~~evSa~~~~~v~~ 203 (228)
+ .+++++||++|.|+++
T Consensus 207 ~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 207 FFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CCGGGEEEEECCSSSCTTSSS
T ss_pred CCcccceEEEEeeecCCCccc
Confidence 3 5799999999999985
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=6.6e-15 Score=117.54 Aligned_cols=162 Identities=11% Similarity=0.013 Sum_probs=89.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++..+...+.++.+.... ..+.+++ .+.+||++|...... .... ...+...
T Consensus 36 g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~-~~~~----~~~~~~~--------- 98 (210)
T 1pui_A 36 NAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEV-PEEM----KRKWQRA--------- 98 (210)
T ss_dssp TSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC-------CC----HHHHHHH---------
T ss_pred CCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCccccc-CHHH----HHHHHHH---------
Confidence 79999999999987765555666654432 3334444 578999999754210 0000 0000000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+...+.. ...++++++++|++++.++... .+...+.. ...|+++|+||+|+....
T Consensus 99 -------~~~~~~~--------------~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 99 -------LGEYLEK--------------RQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASG 153 (210)
T ss_dssp -------HHHHHHH--------------CTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHH
T ss_pred -------HHHHHHh--------------hhcccEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCCch
Confidence 0000000 0112999999999987766432 22222332 268999999999987643
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. +......+..++...+ ...++++||+++.|++++++.+.+.+..
T Consensus 154 ~----------~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 154 A----------RKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp H----------HHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred h----------HHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 2 1112334555555554 3578899999999999999999887654
No 168
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.57 E-value=7.5e-15 Score=120.30 Aligned_cols=165 Identities=13% Similarity=-0.011 Sum_probs=91.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCce--e-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPT--V-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t--~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||++++++..+.....++ + .......+.+++ ..+.+|||||....... ...
T Consensus 39 g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~--------~~~----------- 97 (239)
T 3lxx_A 39 GAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVP--------NAE----------- 97 (239)
T ss_dssp TSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-------------CHH-----------
T ss_pred CCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCC--------HHH-----------
Confidence 79999999999998876554442 2 222234455566 46789999996542210 000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTPIILVGTKLD 154 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~D 154 (228)
+.+.+....... ...+|++|+|+|+++...-+ . .|+..+.... ...|++||+||+|
T Consensus 98 ---------~~~~~~~~~~~~---------~~~~~~~l~v~d~~~~~~~~-~--~~l~~~~~~~~~~~~~~~iiv~nK~D 156 (239)
T 3lxx_A 98 ---------TSKEIIRCILLT---------SPGPHALLLVVPLGRYTEEE-H--KATEKILKMFGERARSFMILIFTRKD 156 (239)
T ss_dssp ---------HHHHHHHHHHHT---------TTCCSEEEEEEETTCCSSHH-H--HHHHHHHHHHHHHHGGGEEEEEECGG
T ss_pred ---------HHHHHHHHHHhc---------CCCCcEEEEEeeCCCCCHHH-H--HHHHHHHHHhhhhccceEEEEEeCCc
Confidence 000011111110 01239999999997644421 1 3444443321 2369999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCC-----CCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQ-----KGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~-----~~v~~lf~~l~~~i~~ 214 (228)
+.......+. .....+.+..+++.++. .++.++...+ .+|.++|..+...+..
T Consensus 157 ~~~~~~~~~~------i~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 157 DLGDTNLHDY------LREAPEDIQDLMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp GC------------------CHHHHHHHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHH------HHhchHHHHHHHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8765321111 00112467888888884 7888876643 6899999988877643
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.55 E-value=3.1e-15 Score=130.70 Aligned_cols=140 Identities=8% Similarity=-0.054 Sum_probs=89.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||+++|+ .+-.|+...+ ..+......+.+|||||+++|.......+..+
T Consensus 31 d~GKSTL~~~L~------~~giTi~~~~---~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~a----------------- 84 (370)
T 2elf_A 31 KSGRTSLAANLG------KKGTSSDITM---YNNDKEGRNMVFVDAHSYPKTLKSLITALNIS----------------- 84 (370)
T ss_dssp TSSHHHHHHTTS------EEEEESSSEE---EEECSSSSEEEEEECTTTTTCHHHHHHHHHTC-----------------
T ss_pred CCCHHHHHHHHH------hCCEEEEeeE---EEEecCCeEEEEEECCChHHHHHHHHHHHHHC-----------------
Confidence 689999999998 1222322111 12333345699999999988753333233333
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE-EEEEe-CCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI-ILVGT-KLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~n-K~Dl~~~ 158 (228)
|++|+|+| ++. .+.... .++..+... ++|. ++++| |+|+ +.
T Consensus 85 -------------------------------D~ailVvd-~~g-~~~qt~-e~~~~~~~~--~i~~~ivvvNNK~Dl-~~ 127 (370)
T 2elf_A 85 -------------------------------DIAVLCIP-PQG-LDAHTG-ECIIALDLL--GFKHGIIALTRSDST-HM 127 (370)
T ss_dssp -------------------------------SEEEEEEC-TTC-CCHHHH-HHHHHHHHT--TCCEEEEEECCGGGS-CH
T ss_pred -------------------------------CEEEEEEc-CCC-CcHHHH-HHHHHHHHc--CCCeEEEEEEeccCC-CH
Confidence 99999999 543 333333 455455444 5777 88888 9999 53
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhC--CceEEE--ecccC---CCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIG--AVKYLE--CSALT---QKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e--vSa~~---~~~v~~lf~~l~~~i~ 213 (228)
... + ...++...+++.++ ..++++ +||++ +.|++++++.+.+.+.
T Consensus 128 ~~~-~---------~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 128 HAI-D---------ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp HHH-H---------HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred HHH-H---------HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 211 1 01234444444433 258999 99999 9999999999987654
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.55 E-value=2e-15 Score=135.73 Aligned_cols=109 Identities=20% Similarity=0.181 Sum_probs=65.1
Q ss_pred EeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEE
Q psy8274 39 INLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118 (228)
Q Consensus 39 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 118 (228)
..+.+|||||++.|.......+..+ |++|+|+
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~a------------------------------------------------D~~ilVv 152 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQA------------------------------------------------DIGVLVI 152 (467)
T ss_dssp EEEEECCCCC-----------TTSC------------------------------------------------SEEEEEE
T ss_pred eEEEEEECCCcHHHHHHHHhhcccC------------------------------------------------CEEEEEE
Confidence 5789999999999887666666666 9999999
Q ss_pred ecCCh---hhHHHHHHhhHHHHhhh-CCCCC-EEEEEeCCCCCCc---hHHHHHHhhccCccccHHHHHHHHHHh-CC--
Q psy8274 119 SLVNP---ASFENVRAKWYPEVRHH-CPSTP-IILVGTKLDLRDD---KETIEKLKEKKLAPITYPQGLSMAKEI-GA-- 187 (228)
Q Consensus 119 Dvt~~---~s~~~~~~~~~~~l~~~-~~~~p-iilv~nK~Dl~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~-- 187 (228)
|+++. .||+... ++...+... ..++| ++||+||+|+... .+.. .....+...+++.+ |+
T Consensus 153 Da~~g~~e~sf~~~~-qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~---------~~i~~e~~~~l~~~~g~~~ 222 (467)
T 1r5b_A 153 SARRGEFEAGFERGG-QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY---------KECVDKLSMFLRRVAGYNS 222 (467)
T ss_dssp ECSTTHHHHTTSTTC-CHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH---------HHHHHHHHHHHHHHHCCCH
T ss_pred eCCcCccccccCCCC-cHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHH---------HHHHHHHHHHHHHhcCCCc
Confidence 99986 3443222 232222221 13577 9999999999642 1111 12233456666665 42
Q ss_pred ---ceEEEecccCCCCHHHHH
Q psy8274 188 ---VKYLECSALTQKGLKTVF 205 (228)
Q Consensus 188 ---~~~~evSa~~~~~v~~lf 205 (228)
.+++++||++|.|+.++|
T Consensus 223 ~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 223 KTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHEEEEECBTTTTBTTSSCC
T ss_pred cCCceEEeccccccccccccc
Confidence 469999999999998765
No 171
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.9e-14 Score=131.96 Aligned_cols=111 Identities=17% Similarity=0.250 Sum_probs=71.7
Q ss_pred CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEE
Q psy8274 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115 (228)
Q Consensus 36 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi 115 (228)
.....+.+|||||++.|.......+..+ |++|
T Consensus 242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~a------------------------------------------------D~~l 273 (611)
T 3izq_1 242 THRANFTIVDAPGHRDFVPNAIMGISQA------------------------------------------------DMAI 273 (611)
T ss_dssp CSSCEEEEEECCSSSCHHHHHTTTSSCC------------------------------------------------SEEE
T ss_pred cCCceEEEEECCCCcccHHHHHHHHhhc------------------------------------------------CceE
Confidence 3446889999999998877766667777 9999
Q ss_pred EEEecCChh---hHH--HHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHHHHhCC--
Q psy8274 116 ICFSLVNPA---SFE--NVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMAKEIGA-- 187 (228)
Q Consensus 116 ~v~Dvt~~~---s~~--~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 187 (228)
+|+|++++. +|. ......+..+.. ....|++||+||+|+..... ..+ ....+...+...+|+
T Consensus 274 lVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNKiDl~~~~~~~~~---------ei~~~l~~~l~~~g~~~ 343 (611)
T 3izq_1 274 LCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQRFE---------EIKSKLLPYLVDIGFFE 343 (611)
T ss_dssp EEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEECTTTTTTCHHHHH---------HHHHHHHHHHHHHTCCG
T ss_pred EEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEecccccchhHHHHH---------HHHHHHHHHHHhhcccc
Confidence 999998742 110 000011112221 12245999999999986311 111 112345556666553
Q ss_pred --ceEEEecccCCCCHHHH
Q psy8274 188 --VKYLECSALTQKGLKTV 204 (228)
Q Consensus 188 --~~~~evSa~~~~~v~~l 204 (228)
.+++++||++|.||.++
T Consensus 344 ~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 344 DNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp GGCEEEECCTTTCTTTSSC
T ss_pred cCccEEeeecccCCCcccc
Confidence 58999999999999976
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.53 E-value=1.3e-14 Score=140.65 Aligned_cols=153 Identities=18% Similarity=0.069 Sum_probs=98.5
Q ss_pred CCChhhhHHhhhhCC-------CCC-------CCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccc
Q psy8274 1 AVGKTCLLISYTTNA-------FPG-------EYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGL 65 (228)
Q Consensus 1 gvGKTsli~~~~~~~-------~~~-------~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 65 (228)
|+|||||+++|+... +.. ....+.+.+.. ..+.++.....+.+|||||++.|.......+..+
T Consensus 306 DvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~A-- 383 (1289)
T 3avx_A 306 DHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM-- 383 (1289)
T ss_dssp TSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCC--
T ss_pred CCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhC--
Confidence 689999999998641 110 00111222211 2234455557889999999998765554455555
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP 145 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p 145 (228)
|++|+|+|++++...+.. .++..+... ++|
T Consensus 384 ----------------------------------------------D~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP 413 (1289)
T 3avx_A 384 ----------------------------------------------DGAILVVAATDGPMPQTR--EHILLGRQV--GVP 413 (1289)
T ss_dssp ----------------------------------------------SEEEEEEETTTCSCTTHH--HHHHHHHHH--TCS
T ss_pred ----------------------------------------------CEEEEEEcCCccCcHHHH--HHHHHHHHc--CCC
Confidence 999999999986543332 344444444 678
Q ss_pred -EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----ceEEEecccCC--------CCHHHHHHHHHHHh
Q psy8274 146 -IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA----VKYLECSALTQ--------KGLKTVFDEAIRAV 212 (228)
Q Consensus 146 -iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~evSa~~~--------~~v~~lf~~l~~~i 212 (228)
++||+||+|+.+..+..+ ...+++..+++.+++ .+++++||++| .|+.++|+.+...+
T Consensus 414 ~IIVVINKiDLv~d~e~le---------~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 414 YIIVFLNKCDMVDDEELLE---------LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CEEEEEECCTTCCCHHHHH---------HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred eEEEEEeecccccchhhHH---------HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 789999999986322111 123456677777763 58999999999 46899999988866
Q ss_pred cC
Q psy8274 213 LC 214 (228)
Q Consensus 213 ~~ 214 (228)
..
T Consensus 485 p~ 486 (1289)
T 3avx_A 485 PE 486 (1289)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 173
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.53 E-value=1.9e-15 Score=128.53 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=49.7
Q ss_pred hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHH
Q psy8274 125 SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTV 204 (228)
Q Consensus 125 s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~l 204 (228)
+|+.+.. ..+.......|+++|+||.|+....+ .....+++..+++.++ ++++++||+++ |++++
T Consensus 140 ~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e----------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~ 204 (301)
T 2qnr_A 140 GLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE----------RERLKKRILDEIEEHN-IKIYHLPDAES-DEDED 204 (301)
T ss_dssp SCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH----------HHHHHHHHHHHHHHTT-CCCCCCC----------
T ss_pred CCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH----------HHHHHHHHHHHHHHcC-CeEEecCCccc-cccHH
Confidence 4665531 33444445689999999999986532 1234567888899999 59999999999 99999
Q ss_pred HHHHHHHhcCCCC
Q psy8274 205 FDEAIRAVLCPVP 217 (228)
Q Consensus 205 f~~l~~~i~~~~~ 217 (228)
|.++.+.+....|
T Consensus 205 f~~l~~~i~~~~p 217 (301)
T 2qnr_A 205 FKEQTRLLKASIP 217 (301)
T ss_dssp CHHHHHHHHTTCS
T ss_pred HHHHHHHhhcCCC
Confidence 9999999876554
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.53 E-value=5e-16 Score=130.98 Aligned_cols=85 Identities=18% Similarity=0.019 Sum_probs=54.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHH--HHHhCCce
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSM--AKEIGAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~ 189 (228)
+++++|+|+++..+..... .|+..+.. .+.|+++|+||+|+..... ...+..... ....+..+
T Consensus 164 ~~il~v~d~~~~~~~~~~~-~~~~~~~~--~~~~~i~V~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~ 228 (299)
T 2aka_B 164 CLILAVSPANSDLANSDAL-KIAKEVDP--QGQRTIGVITKLDLMDEGT------------DARDVLENKLLPLRRGYIG 228 (299)
T ss_dssp EEEEEEEESSSCGGGCHHH-HHHHHHCT--TCSSEEEEEECGGGSCTTC------------CCHHHHTTCSSCCTTCEEE
T ss_pred eEEEEEecCCcchhhhHHH-HHHHHhCC--CCCeEEEEEEccccCCCCc------------hHHHHHhCCcCcCCCCcEE
Confidence 3445799998765554433 34444443 3689999999999986422 111111100 00113347
Q ss_pred EEEecccCCCCHHHHHHHHHHH
Q psy8274 190 YLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~ 211 (228)
++++||++|.|++++|+++...
T Consensus 229 v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 229 VVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CCCCCCBCTTSCBCHHHHHHHH
T ss_pred EECCChhhccccccHHHHHHHH
Confidence 8899999999999999998763
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.52 E-value=5.8e-15 Score=132.40 Aligned_cols=111 Identities=12% Similarity=0.104 Sum_probs=73.5
Q ss_pred EcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCce
Q psy8274 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDV 113 (228)
Q Consensus 34 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 113 (228)
++.....+.+|||||++.|.......+..+ |+
T Consensus 80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~a------------------------------------------------D~ 111 (458)
T 1f60_A 80 FETPKYQVTVIDAPGHRDFIKNMITGTSQA------------------------------------------------DC 111 (458)
T ss_dssp EECSSEEEEEEECCCCTTHHHHHHHSSSCC------------------------------------------------SE
T ss_pred EecCCceEEEEECCCcHHHHHHHHhhhhhC------------------------------------------------CE
Confidence 344456899999999998776555555555 99
Q ss_pred EEEEEecCChh---hHH---HHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCc-hHHHHHHhhccCccccHHHHHHHHHHh
Q psy8274 114 FQICFSLVNPA---SFE---NVRAKWYPEVRHHCPSTP-IILVGTKLDLRDD-KETIEKLKEKKLAPITYPQGLSMAKEI 185 (228)
Q Consensus 114 vi~v~Dvt~~~---s~~---~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 185 (228)
+|+|+|+++.. +|+ ... .++..+.. .++| ++||+||+|+... ....+ ...++...+++.+
T Consensus 112 ~ilVvda~~g~~~~sf~~~~qt~-~~~~~~~~--~~v~~iivviNK~Dl~~~~~~~~~---------~i~~~~~~~l~~~ 179 (458)
T 1f60_A 112 AILIIAGGVGEFEAGISKDGQTR-EHALLAFT--LGVRQLIVAVNKMDSVKWDESRFQ---------EIVKETSNFIKKV 179 (458)
T ss_dssp EEEEEECSHHHHHHHTCTTSHHH-HHHHHHHH--TTCCEEEEEEECGGGGTTCHHHHH---------HHHHHHHHHHHHH
T ss_pred EEEEEeCCcCccccccCcchhHH-HHHHHHHH--cCCCeEEEEEEccccccCCHHHHH---------HHHHHHHHHHHHc
Confidence 99999999763 331 112 22222222 2565 8999999999841 11111 1234566777777
Q ss_pred CC----ceEEEecccCCCCHHHH
Q psy8274 186 GA----VKYLECSALTQKGLKTV 204 (228)
Q Consensus 186 ~~----~~~~evSa~~~~~v~~l 204 (228)
++ .+++++||++|.|+.++
T Consensus 180 g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 180 GYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCCccCceEEEeecccCcCcccc
Confidence 74 58999999999999743
No 176
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.50 E-value=4.5e-14 Score=116.67 Aligned_cols=165 Identities=11% Similarity=-0.018 Sum_probs=91.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee---eccceeEEEcCeEEeeeeeeCCCCcccccCC-CCccccccchhHHhhcchhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMVDGKPINLGLWDTAGQEDYDRLR-PLSYPQTGLSMAKEIGAVKY 76 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 76 (228)
|||||||+|++++..+.....++.+ .........++ ..+.+|||||........ ..+....
T Consensus 31 g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i------------- 95 (247)
T 3lxw_A 31 GAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER------------- 95 (247)
T ss_dssp TSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH-------------
T ss_pred CCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH-------------
Confidence 7999999999998776433332221 11223344455 567899999975332111 1111100
Q ss_pred hhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeC
Q psy8274 77 LECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTK 152 (228)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK 152 (228)
.+..... ...+|++|+|+|+++....+ ..++..+.... .+.|++|++||
T Consensus 96 ------------------~~~~~~~------~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 96 ------------------GHCYLLS------APGPHALLLVTQLGRFTAQD---QQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp ------------------HHHHHHH------TTCCSEEEEEEETTBCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred ------------------HHHHHhc------CCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHhChhhhccEEEEEEch
Confidence 0000000 01129999999998522211 13344444332 25899999999
Q ss_pred CCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccC-----CCCHHHHHHHHHHHhcC
Q psy8274 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALT-----QKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 153 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~-----~~~v~~lf~~l~~~i~~ 214 (228)
+|+....- +.... ....++...+.+.+|. ++..+++.. +.||++|+..+.+.+..
T Consensus 149 ~Dl~~~~~--~~~l~----~~~~~~l~~l~~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 149 EDLAGGSL--HDYVS----NTENRALRELVAECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GGGTTCCH--HHHHH----HCCCHHHHHHHHHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCH--HHHHh----hcccHHHHHHHHHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 99975321 11000 0122456788888884 677666554 57999999999887764
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.48 E-value=1e-13 Score=129.60 Aligned_cols=104 Identities=17% Similarity=0.059 Sum_probs=67.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee----------------eecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV----------------FDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~----------------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||+++|+..........++ +..+ .....+....+.+.+|||+|+.++.......++.+
T Consensus 19 gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~a 98 (665)
T 2dy1_A 19 GSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAA 98 (665)
T ss_dssp TSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhc
Confidence 799999999999544321111111 1111 12233333457889999999988765444444444
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPS 143 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~ 143 (228)
|++++|+|+++....... .++..+... +
T Consensus 99 ------------------------------------------------d~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ 126 (665)
T 2dy1_A 99 ------------------------------------------------DAALVAVSAEAGVQVGTE--RAWTVAERL--G 126 (665)
T ss_dssp ------------------------------------------------SEEEEEEETTTCSCHHHH--HHHHHHHHT--T
T ss_pred ------------------------------------------------CcEEEEEcCCcccchhHH--HHHHHHHHc--c
Confidence 999999999876554433 444455443 6
Q ss_pred CCEEEEEeCCCCC
Q psy8274 144 TPIILVGTKLDLR 156 (228)
Q Consensus 144 ~piilv~nK~Dl~ 156 (228)
+|+++|+||+|+.
T Consensus 127 ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 127 LPRMVVVTKLDKG 139 (665)
T ss_dssp CCEEEEEECGGGC
T ss_pred CCEEEEecCCchh
Confidence 9999999999987
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.47 E-value=2e-14 Score=132.55 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=59.4
Q ss_pred EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEE
Q psy8274 38 PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 117 (228)
...+.||||||++.|.......+..+ |++|+|
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~a------------------------------------------------D~alLV 285 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSA------------------------------------------------DFAVLV 285 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------------------------------------------------------CCSE
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhC------------------------------------------------CEEEEE
Confidence 36789999999999887766666666 999999
Q ss_pred EecCCh----------hhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCc-hHHHHHHhhccCccccHHHHHHHH-HH
Q psy8274 118 FSLVNP----------ASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDD-KETIEKLKEKKLAPITYPQGLSMA-KE 184 (228)
Q Consensus 118 ~Dvt~~----------~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~ 184 (228)
+|++++ .+...+ ..+... ++| +|||+||+|+... ....+ ....+...+. +.
T Consensus 286 VDa~~g~~e~gi~~~~qt~e~l-----~~~~~l--gip~iIvviNKiDl~~~~~~~~~---------~i~~el~~~l~~~ 349 (592)
T 3mca_A 286 VDSSQNNFERGFLENGQTREHA-----YLLRAL--GISEIVVSVNKLDLMSWSEDRFQ---------EIKNIVSDFLIKM 349 (592)
T ss_dssp EEEEECCSSTTSCSCSSHHHHH-----HHHHHS--SCCCEEEEEECGGGGTTCHHHHH---------HHHHHHHHHHTTT
T ss_pred EECCCCccccccccchHHHHHH-----HHHHHc--CCCeEEEEEeccccccccHHHHH---------HHHHHHHHHHHHh
Confidence 999864 333322 122222 455 9999999999752 11111 1123344444 44
Q ss_pred hCC----ceEEEecccCCCCHH
Q psy8274 185 IGA----VKYLECSALTQKGLK 202 (228)
Q Consensus 185 ~~~----~~~~evSa~~~~~v~ 202 (228)
+|+ .+++++||++|.||.
T Consensus 350 ~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 350 VGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp SCCCGGGEEEEEECSSSCSSSC
T ss_pred hCCCccceEEEEEecccCcccc
Confidence 554 379999999999998
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=1.7e-13 Score=113.99 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=74.1
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++..+ ...+.++........+..++ ..+.+|||||+..+......+++.
T Consensus 46 g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~---------------- 107 (262)
T 3def_A 46 GVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALEL---------------- 107 (262)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHH----------------
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHH----------------
Confidence 7999999999998874 34444444444444455565 478999999998876443322211
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEeCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLDL 155 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl 155 (228)
....+. ...+|++++|+|++... +......|+..+..... ..|+++|+||+|+
T Consensus 108 ----------------i~~~l~-------~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 108 ----------------IKGFLV-------NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp ----------------HHHHTT-------TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred ----------------HHHHHh-------cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 011110 01229999999997655 54443367777776543 2499999999999
Q ss_pred CC
Q psy8274 156 RD 157 (228)
Q Consensus 156 ~~ 157 (228)
..
T Consensus 164 ~~ 165 (262)
T 3def_A 164 SP 165 (262)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.44 E-value=4.7e-13 Score=118.43 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=68.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
+.+++++|++ ...+..+. .|...+..+.. ..|.+||+||+|+... . ...+.....+..+ .
T Consensus 237 ~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-------------~~~~l~~~l~~~g-~ 299 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-------------AVKALADALAREG-L 299 (416)
T ss_dssp SEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-------------HHHHHHHHHHTTT-S
T ss_pred HhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-------------HHHHHHHHHHhcC-C
Confidence 9999999998 66777776 77777666542 5899999999999864 1 1223444455556 4
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+++++||+++.|++++++++.+.+.....
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 89999999999999999999998876543
No 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=121.78 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=76.1
Q ss_pred CCChhhhHHhhhhCCCCCCC--------Cceeee-ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEY--------IPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEI 71 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~--------~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 71 (228)
|+|||||++.|++..+.... .+|+.. .....+..++....+.+||++|....... ...+. .+.+
T Consensus 41 GaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~~~----~i~~-- 113 (418)
T 2qag_C 41 GLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNCWQ----PVID-- 113 (418)
T ss_dssp TSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------CH----HHHH--
T ss_pred CCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhhHH----HHHH--
Confidence 89999999999987763111 122221 11222233455568999999998654210 00000 0100
Q ss_pred cchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh-hhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 72 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP-ASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~-~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
++ ++.+......-+..+. .-...+++.+++|+.+.. .+++.+...|+..+. .++|+|+|+
T Consensus 114 ----~i----------~~~~~~~l~qr~~IaR--al~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVi 174 (418)
T 2qag_C 114 ----YI----------DSKFEDYLNAESRVNR--RQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLI 174 (418)
T ss_dssp ----HH----------HHHHHHHTTTSCC-CC--CCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEE
T ss_pred ----HH----------HHHHHHHHHHHHHHHH--HhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEE
Confidence 00 0001000000000000 112233555666666553 466665435666664 369999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccH--HHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITY--PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
||+|+....+ +.. .++..++..++ ++++++|++++.+++++|..+...+.
T Consensus 175 nK~Dll~~~e------------v~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 175 AKADTLTPEE------------CQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp ESTTSSCHHH------------HHHHHHHHHHHHHHHT-CCCCCCC-----------------CC
T ss_pred EcccCccHHH------------HHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 9999987533 222 56777788888 58999999999999999988887654
No 182
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.42 E-value=2.7e-14 Score=115.48 Aligned_cols=59 Identities=24% Similarity=0.208 Sum_probs=46.5
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..|.++|+||+|+... +....+++..+++.++ ..+++++||++|.|++++|+++.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADA------------VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHH------------HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCch------------hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4788999999998753 2245566777777653 258999999999999999999988764
No 183
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.40 E-value=2e-12 Score=117.82 Aligned_cols=106 Identities=17% Similarity=0.092 Sum_probs=65.1
Q ss_pred CCChhhhHHhhhhCC--CCC--------CCCcee----------eecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCc
Q psy8274 1 AVGKTCLLISYTTNA--FPG--------EYIPTV----------FDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~--------~~~~t~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 59 (228)
|+|||||+++|+... +.. .+..+. +.+. .....++...+.+.+|||||+.+|......+
T Consensus 23 ~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 102 (529)
T 2h5e_A 23 DAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT 102 (529)
T ss_dssp TSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHG
T ss_pred CChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHH
Confidence 799999999999632 100 000111 1111 1122333334788999999998877555555
Q ss_pred cccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh
Q psy8274 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH 139 (228)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~ 139 (228)
+..+ |++|+|+|+++...-... .++..+..
T Consensus 103 l~~a------------------------------------------------D~~IlVvDa~~g~~~~t~--~~~~~~~~ 132 (529)
T 2h5e_A 103 LTAV------------------------------------------------DCCLMVIDAAKGVEDRTR--KLMEVTRL 132 (529)
T ss_dssp GGGC------------------------------------------------SEEEEEEETTTCSCHHHH--HHHHHHTT
T ss_pred HHHC------------------------------------------------CEEEEEEeCCccchHHHH--HHHHHHHH
Confidence 5555 999999999986433221 33333333
Q ss_pred hCCCCCEEEEEeCCCCCCc
Q psy8274 140 HCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 140 ~~~~~piilv~nK~Dl~~~ 158 (228)
.++|+++|+||+|+...
T Consensus 133 --~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 133 --RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp --TTCCEEEEEECTTSCCS
T ss_pred --cCCCEEEEEcCcCCccc
Confidence 26899999999999754
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.39 E-value=1e-12 Score=109.72 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=70.5
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||+++|++..+. ..+.++..... ...++.....+.+|||||+..+..+...+.. .+
T Consensus 49 g~GKSSLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~--------~i------- 111 (270)
T 1h65_A 49 GVGKSSTVNSIIGERVVSISPFQSEGPRPV--MVSRSRAGFTLNIIDTPGLIEGGYINDMALN--------II------- 111 (270)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCSSCE--EEEEEETTEEEEEEECCCSEETTEECHHHHH--------HH-------
T ss_pred CCCHHHHHHHHhCCCcccccCCCCcceeeE--EEEEeeCCeEEEEEECCCCCCCccchHHHHH--------HH-------
Confidence 79999999999988763 23333322222 2233333467999999999876433221110 00
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-C--CCEEEEEeCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-S--TPIILVGTKLDL 155 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~--~piilv~nK~Dl 155 (228)
...+ ....+|++++|||++.. ++......|+..+..... . .|+++|+||+|+
T Consensus 112 -----------------~~~~-------~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 112 -----------------KSFL-------LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp -----------------HHHT-------TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred -----------------HHHh-------hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence 0000 00122999999999753 454443377777776543 2 699999999999
Q ss_pred CCc
Q psy8274 156 RDD 158 (228)
Q Consensus 156 ~~~ 158 (228)
..+
T Consensus 167 ~~~ 169 (270)
T 1h65_A 167 SPP 169 (270)
T ss_dssp CCG
T ss_pred CCc
Confidence 754
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.39 E-value=8.1e-13 Score=123.93 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=66.9
Q ss_pred CCChhhhHHhhhhC--CCCC------------------CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCcc
Q psy8274 1 AVGKTCLLISYTTN--AFPG------------------EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 60 (228)
|+|||||+++|+.. .+.. .+..|+... ...+..+ .+.+.+|||||+.+|...+...+
T Consensus 22 ~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTPG~~df~~~~~~~l 98 (691)
T 1dar_A 22 DAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTPGHVDFTIEVERSM 98 (691)
T ss_dssp TSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCCSSTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECcCccchHHHHHHHH
Confidence 79999999999842 2210 111222111 1122223 36889999999988765544444
Q ss_pred ccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh
Q psy8274 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH 140 (228)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~ 140 (228)
..+ |++++|+|+++..++.... .|. .+...
T Consensus 99 ~~a------------------------------------------------D~~ilVvDa~~g~~~~t~~-~~~-~~~~~ 128 (691)
T 1dar_A 99 RVL------------------------------------------------DGAIVVFDSSQGVEPQSET-VWR-QAEKY 128 (691)
T ss_dssp HHC------------------------------------------------SEEEEEEETTTCSCHHHHH-HHH-HHHHT
T ss_pred HHC------------------------------------------------CEEEEEEECCCCcchhhHH-HHH-HHHHc
Confidence 444 9999999999988887664 444 34433
Q ss_pred CCCCCEEEEEeCCCCCCc
Q psy8274 141 CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~ 158 (228)
+.|+++|+||+|+...
T Consensus 129 --~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 129 --KVPRIAFANKMDKTGA 144 (691)
T ss_dssp --TCCEEEEEECTTSTTC
T ss_pred --CCCEEEEEECCCcccC
Confidence 7999999999999754
No 186
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.38 E-value=1.1e-12 Score=105.55 Aligned_cols=85 Identities=18% Similarity=0.086 Sum_probs=58.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC-CceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG-AVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 190 (228)
+.+++|+|+++.... .. .+.. .. ..|+++|+||+|+... +....++...+++.++ ..++
T Consensus 131 ~~~i~vvd~~~~~~~--~~-~~~~---~~--~~~~iiv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~i 190 (221)
T 2wsm_A 131 NYRVVMVSVTEGDDV--VE-KHPE---IF--RVADLIVINKVALAEA------------VGADVEKMKADAKLINPRAKI 190 (221)
T ss_dssp SEEEEEEEGGGCTTH--HH-HCHH---HH--HTCSEEEEECGGGHHH------------HTCCHHHHHHHHHHHCTTSEE
T ss_pred CcEEEEEeCCCcchh--hh-hhhh---hh--hcCCEEEEecccCCcc------------hhhHHHHHHHHHHHhCCCCeE
Confidence 789999999875431 11 2211 11 4789999999998653 1234555666666553 2589
Q ss_pred EEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 191 LECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+++||++|.|++++|+++.+.+....
T Consensus 191 ~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 191 IEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHC---
T ss_pred EEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886543
No 187
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.36 E-value=3.6e-12 Score=108.33 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=66.8
Q ss_pred ceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCcccc-HHHHHHHHHHhCCce
Q psy8274 112 DVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT-YPQGLSMAKEIGAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~ 189 (228)
|++++|||++++. ++..+. .|+..+... ++|++||+||+||.+... +. .++...+++.+|+ +
T Consensus 81 D~vliV~d~~~p~~s~~~l~-~~l~~~~~~--~~~~ilV~NK~DL~~~~~------------v~~~~~~~~~~~~~g~-~ 144 (302)
T 2yv5_A 81 DRVIIVETLKMPEFNNYLLD-NMLVVYEYF--KVEPVIVFNKIDLLNEEE------------KKELERWISIYRDAGY-D 144 (302)
T ss_dssp CEEEEEECSTTTTCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGCCHHH------------HHHHHHHHHHHHHTTC-E
T ss_pred CEEEEEEECCCCCCCHHHHH-HHHHHHHhC--CCCEEEEEEcccCCCccc------------cHHHHHHHHHHHHCCC-e
Confidence 9999999999986 888776 888877663 799999999999986521 22 3455677777884 8
Q ss_pred EEEecccCCCCHHHHHHHHH
Q psy8274 190 YLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~ 209 (228)
++++||++|.|++++|..+.
T Consensus 145 ~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 145 VLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEECCTTTCTTHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHhhcc
Confidence 99999999999999998754
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.35 E-value=1.2e-12 Score=122.92 Aligned_cols=99 Identities=10% Similarity=0.143 Sum_probs=60.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH----HHHHHhhccCccccHHHHHHHHHHhC-
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE----TIEKLKEKKLAPITYPQGLSMAKEIG- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~- 186 (228)
|++++|+|++++.+..... .|...+... ..|+++|+||+|+..... ..+...... ..+.......+....+
T Consensus 202 D~vL~Vvda~~~~s~~e~~-~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~-~~i~~~~~~~l~~~~~~ 277 (695)
T 2j69_A 202 HAILFVMRASQPCTLGERR-YLENYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASE-NRLRQVFNANLAEYCTV 277 (695)
T ss_dssp SEEEEEEETTSTTCHHHHH-HHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHH-HHHHHHHHHHHGGGGBS
T ss_pred CEEEEEEeCCCccchhHHH-HHHHHHHhh--CCCEEEEEECcccccccccChhhHHHHHHHH-HHHHHHHHHHHHHhhcc
Confidence 9999999999988888775 555444433 678999999999975420 000000000 0000000001111111
Q ss_pred ------CceEEEeccc--------------CCCCHHHHHHHHHHHhcC
Q psy8274 187 ------AVKYLECSAL--------------TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 187 ------~~~~~evSa~--------------~~~~v~~lf~~l~~~i~~ 214 (228)
..++++|||+ ++.|+++++..+...+..
T Consensus 278 ~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 278 EGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp SSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred cccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1368999999 999999999999886643
No 189
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.32 E-value=1.2e-11 Score=116.08 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=51.9
Q ss_pred CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEE
Q psy8274 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115 (228)
Q Consensus 36 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi 115 (228)
+..+.+.+|||||+.+|...+...++.+ |++|
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~a------------------------------------------------D~aI 110 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVL------------------------------------------------DGAV 110 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHC------------------------------------------------CEEE
Confidence 3448899999999988765554444444 9999
Q ss_pred EEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 116 ICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 116 ~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+|+|+++..+..... .| ..+... ++|+++|+||+|+...
T Consensus 111 lVvDa~~gv~~qt~~-~~-~~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 111 MVYCAVGGVQPQSET-VW-RQANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEEeCCCCCcHHHHH-HH-HHHHHc--CCCEEEEEeCCCcccc
Confidence 999999876655443 33 333333 6899999999998754
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.31 E-value=4e-13 Score=116.70 Aligned_cols=80 Identities=14% Similarity=0.025 Sum_probs=52.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
|++|+|+|.++...... .|+..+.... .+.|+++|+||+|+.... ....+.+..+...++ .+|
T Consensus 174 d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~ 237 (360)
T 3t34_A 174 NCIILAISPANQDLATS---DAIKISREVDPSGDRTFGVLTKIDLMDKG------------TDAVEILEGRSFKLK-YPW 237 (360)
T ss_dssp SEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEEEEECGGGCCTT------------CCSHHHHTTSSSCCS-SCC
T ss_pred CeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEEEEeCCccCCCc------------ccHHHHHcCcccccc-CCe
Confidence 99999998865443321 3444444443 368999999999998652 233333333444456 579
Q ss_pred EEecccCCCCHHHHHHH
Q psy8274 191 LECSALTQKGLKTVFDE 207 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~ 207 (228)
+++|++++.++++.+..
T Consensus 238 ~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 238 VGVVNRSQADINKNVDM 254 (360)
T ss_dssp EEECCCCHHHHHTTCCH
T ss_pred EEEEECChHHhccCCCH
Confidence 99999998888776544
No 191
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.30 E-value=8.6e-13 Score=112.00 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=49.2
Q ss_pred ceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
|++++|+|.++.. +-.... .+...+.. .+.|+++|+||+|+..... ...+........++ ..|
T Consensus 169 d~iilvvd~~~~~~~~~~~~-~i~~~~~~--~~~~~i~v~NK~Dl~~~~~------------~~~~~~~~~~~~~~-~~~ 232 (315)
T 1jwy_B 169 NAIIVAVTPANTDLANSDAL-QLAKEVDP--EGKRTIGVITKLDLMDKGT------------DAMEVLTGRVIPLT-LGF 232 (315)
T ss_dssp TEEEEEEEESSSCSTTCSHH-HHHHHHCS--SCSSEEEEEECTTSSCSSC------------CCHHHHTTSSSCCT-TCE
T ss_pred CeEEEEEEecCcchhhhHHH-HHHHHhCC--CCCcEEEEEcCcccCCcch------------HHHHHHhCCCccCC-CCe
Confidence 9999999985432 111111 23333332 3689999999999986421 11111110000111 245
Q ss_pred EEecc---cC---CCCHHHHHHHHHHHhcC
Q psy8274 191 LECSA---LT---QKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 191 ~evSa---~~---~~~v~~lf~~l~~~i~~ 214 (228)
+++|+ .+ +.|+++++..+...+..
T Consensus 233 ~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 233 IGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 56554 45 78999999998877654
No 192
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.30 E-value=8.5e-12 Score=117.06 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=67.2
Q ss_pred CCChhhhHHhhhh--CCCCC-----------CC-------CceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCcc
Q psy8274 1 AVGKTCLLISYTT--NAFPG-----------EY-------IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60 (228)
Q Consensus 1 gvGKTsli~~~~~--~~~~~-----------~~-------~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 60 (228)
|+|||||+++|+. +.+.. ++ ..|+.. ....+..++ +.+.+|||||+.++.......+
T Consensus 20 ~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~-~~~~~~~~~--~~i~liDTPG~~df~~~~~~~l 96 (693)
T 2xex_A 20 DAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITS-AATTAAWEG--HRVNIIDTPGHVDFTVEVERSL 96 (693)
T ss_dssp GGTHHHHHHHHHHHHSSCC-------------------------CC-SEEEEEETT--EEEEEECCCCCSSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEee-eeEEEEECC--eeEEEEECcCCcchHHHHHHHH
Confidence 6899999999995 33311 00 011111 011233333 6789999999987665444344
Q ss_pred ccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh
Q psy8274 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH 140 (228)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~ 140 (228)
+.+ |++++|+|+++..+..... .|. .+...
T Consensus 97 ~~a------------------------------------------------D~~llVvDa~~g~~~~~~~-~~~-~~~~~ 126 (693)
T 2xex_A 97 RVL------------------------------------------------DGAVTVLDAQSGVEPQTET-VWR-QATTY 126 (693)
T ss_dssp HHC------------------------------------------------SEEEEEEETTTBSCHHHHH-HHH-HHHHT
T ss_pred HHC------------------------------------------------CEEEEEECCCCCCcHHHHH-HHH-HHHHc
Confidence 444 9999999999988877664 443 44444
Q ss_pred CCCCCEEEEEeCCCCCCc
Q psy8274 141 CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~ 158 (228)
+.|+++|+||+|+...
T Consensus 127 --~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 127 --GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp --TCCEEEEEECTTSTTC
T ss_pred --CCCEEEEEECCCcccc
Confidence 6899999999999764
No 193
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.28 E-value=3.9e-12 Score=112.01 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHH
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFD 206 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~ 206 (228)
.+|+++|+||+|+... . ............+ .+++++||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~~~-~-------------~l~~l~~~~~~~~-~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASD-E-------------QIKRLVREEEKRG-YIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCH-H-------------HHHHHHHHHHHTT-CEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccch-H-------------HHHHHHHHHhhcC-CcEEEEeccchhhHHHHHh
Confidence 3899999999998732 1 0122222223335 4899999999988876544
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.23 E-value=4.2e-13 Score=116.32 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=49.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
+++++|.|.+...+-.... .++..+.. .+.|+++|+||+|+.+....... ..+...+...+|+.+++
T Consensus 169 ~iiL~v~~a~~~~~~~~~~-~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~----------~~~~~~~~l~~~~~~v~ 235 (353)
T 2x2e_A 169 CLILAVSPANSDLANSDAL-KVAKEVDP--QGQRTIGVITKLDLMDEGTDARD----------VLENKLLPLRRGYIGVV 235 (353)
T ss_dssp EEEEEEEETTSCGGGCHHH-HHHHHHCT--TCTTEEEEEECGGGSCTTCCCHH----------HHTTCSSCCTTCEEECC
T ss_pred eEEEEEecCCCccchhHHH-HHHHHhCc--CCCceEEEeccccccCcchhHHH----------HHhCCcccccCCceEEE
Confidence 6666676765432211111 23333332 36899999999999864220000 00000001113445678
Q ss_pred EecccCCCCHHHHHHHHHH
Q psy8274 192 ECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~ 210 (228)
++||+++.|++++++.+..
T Consensus 236 ~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 236 NRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CCCHHHHHTTCCHHHHHHH
T ss_pred eCCcccccccccHHHHHHH
Confidence 8999999999999998876
No 195
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=99.43 Aligned_cols=111 Identities=9% Similarity=-0.021 Sum_probs=69.0
Q ss_pred eCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChh
Q psy8274 45 DTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPA 124 (228)
Q Consensus 45 D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~ 124 (228)
|.+||..++++|..||.++ |++|+|.|.+|.+
T Consensus 108 ~~GGQ~klRplWr~Yy~~T------------------------------------------------dglIfVVDSsD~~ 139 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVV------------------------------------------------DGFIYVANAEAHK 139 (227)
T ss_dssp ---------CCHHHHHHHC------------------------------------------------SEEEEEEECBTTC
T ss_pred ccCcHHHHHHHHHHHhcCC------------------------------------------------CEEEEEeccccHh
Confidence 3458999999999999998 9999999999986
Q ss_pred hHHHHHHhh---HHHHhhhC--CCCCEEEEEeCC-CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCC
Q psy8274 125 SFENVRAKW---YPEVRHHC--PSTPIILVGTKL-DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQ 198 (228)
Q Consensus 125 s~~~~~~~~---~~~l~~~~--~~~piilv~nK~-Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~ 198 (228)
.++ ..+++ ...+.+.. .+.|++|++||. |+....+..+..+...+.. + ... +.+..|||++|
T Consensus 140 R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~--------l--~R~-W~Iq~csA~TG 207 (227)
T 3l82_B 140 RHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL--------L--NHP-WLVQDTEAETL 207 (227)
T ss_dssp CCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGG--------G--CSC-EEEEEEETTTC
T ss_pred HHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcC--------C--CCC-EEEEEeECCCC
Confidence 654 33233 23333322 468999999995 7765433222211111110 0 122 56899999999
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy8274 199 KGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 199 ~~v~~lf~~l~~~i~~~ 215 (228)
+|+.+.++|+...+...
T Consensus 208 eGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 208 TGFLNGIEWILEEVESK 224 (227)
T ss_dssp TTHHHHHHHHTTTTTTC
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 99999999999877543
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.16 E-value=1.9e-11 Score=106.09 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=54.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH-------
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE------- 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------- 184 (228)
|++++|+|.+..+.+..+. ..+ ...|+++|+||+|+....... ....+.......
T Consensus 194 D~vl~V~d~~~~~~~~~l~----~~~----~~~p~ivVlNK~Dl~~~~~~~----------~~~~~l~~~l~~~~~~~~~ 255 (355)
T 3p32_A 194 DTFVLLTLARTGDQLQGIK----KGV----LELADIVVVNKADGEHHKEAR----------LAARELSAAIRLIYPREAL 255 (355)
T ss_dssp SEEEEEEESSTTCTTTTCC----TTS----GGGCSEEEEECCCGGGHHHHH----------HHHHHHHHHHHHHSTTCCS
T ss_pred CEEEEEECCCCCccHHHHH----HhH----hhcCCEEEEECCCCcChhHHH----------HHHHHHHHHHhhccccccC
Confidence 9999999987665543221 111 135899999999997542210 011111122111
Q ss_pred hCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 185 IGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 185 ~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++ .+++++||++|.|++++++++.+.+.
T Consensus 256 ~~-~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 256 WR-PPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp CC-CCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred CC-CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 23 58999999999999999999988764
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=3.6e-10 Score=98.15 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=29.7
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccC
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALT 197 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~ 197 (228)
..|+++++|+.|..-. .......+..++...+ .+++++||+.
T Consensus 199 ~KPvi~v~N~~e~~~~------------~n~~~~~v~~~~~~~~-~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDGFE------------NNPYLDRVREIAAKEG-AVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTCSS------------SCHHHHHHHHHHHHTT-CEEEEECHHH
T ss_pred CCcEEEEEeccccccc------------ccHHHHHHHHHHHHcC-CCEEEechHH
Confidence 4899999999996521 1123455677777778 4899999764
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.12 E-value=3.5e-11 Score=110.07 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=34.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|+|+++........ .|+..+... ..|+++|+||+|+....+
T Consensus 190 D~il~VvDa~~~~~~~~~~-~~l~~l~~~--~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 190 DLIILLFDAHKLEISDEFS-EAIGALRGH--EDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp SEEEEEEETTSCCCCHHHH-HHHHHTTTC--GGGEEEEEECGGGSCHHH
T ss_pred CEEEEEEeCCcCCCCHHHH-HHHHHHHhc--CCCEEEEEECCCccCHHH
Confidence 9999999998855444444 666666544 579999999999987543
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.10 E-value=8.8e-11 Score=96.82 Aligned_cols=98 Identities=15% Similarity=0.029 Sum_probs=54.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHh-hhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHH-------------
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ------------- 177 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~------------- 177 (228)
++++++.|.....+.......+..... ....+.|+++|+||+|+....+..+. ... .+ ..+.
T Consensus 139 ~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~-~~~-l~--~~~~~~~~l~~~~~~~~ 214 (262)
T 1yrb_A 139 PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERH-RKY-FE--DIDYLTARLKLDPSMQG 214 (262)
T ss_dssp CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHH-HHH-HH--CHHHHHHHHHHCCSHHH
T ss_pred ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHH-HHH-Hh--ChHHHHHHHhccccccc
Confidence 677777776543333222211111111 11236899999999999865421111 000 00 0000
Q ss_pred -----HHHHHHHhCC-ceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 178 -----GLSMAKEIGA-VKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 178 -----~~~~~~~~~~-~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
...+++.++. .+++++||+++.|++++++++.+.+.
T Consensus 215 ~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 215 LMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1112345543 37999999999999999999987653
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.08 E-value=5.6e-11 Score=113.69 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=55.5
Q ss_pred cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceE
Q psy8274 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVF 114 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~v 114 (228)
++..+.+.+|||||+.+|...+..+++.+ |++
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~a------------------------------------------------D~a 125 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVT------------------------------------------------DGA 125 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTC------------------------------------------------SEE
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhC------------------------------------------------CEE
Confidence 44578899999999998876665555555 999
Q ss_pred EEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 115 QICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 115 i~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|+|+|++++.++.... .|.... . .+.|+++|+||+|+..
T Consensus 126 ilVvDa~~g~~~qt~~-~~~~~~-~--~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 126 LVVVDTIEGVCVQTET-VLRQAL-G--ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEETTTBSCHHHHH-HHHHHH-H--TTCEEEEEEECHHHHH
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH-H--cCCCeEEEEECCCcch
Confidence 9999999998888764 554332 2 2689999999999873
No 201
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.03 E-value=2.1e-10 Score=96.09 Aligned_cols=110 Identities=9% Similarity=-0.036 Sum_probs=73.7
Q ss_pred CCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh
Q psy8274 46 TAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS 125 (228)
Q Consensus 46 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s 125 (228)
.+||..++++|..||.++ |++|+|.|.+|++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~t------------------------------------------------dglIfVVDSsDreR 225 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVV------------------------------------------------DGFIYVANAEAHKR 225 (312)
T ss_dssp ---CCCCCHHHHHHHHHC------------------------------------------------SEEEECCBCBTTCC
T ss_pred CCCHHHHHHHHHHHhcCC------------------------------------------------CEEEEEecCCcHhH
Confidence 568899999999999998 99999999999886
Q ss_pred HHHHHHh---hHHHHhhh--CCCCCEEEEEeC-CCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCC
Q psy8274 126 FENVRAK---WYPEVRHH--CPSTPIILVGTK-LDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQK 199 (228)
Q Consensus 126 ~~~~~~~---~~~~l~~~--~~~~piilv~nK-~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~ 199 (228)
++ ..++ +...+.+. ..+.|++|.+|| .|+....+..+..+...... + ... ..+..|||.+|+
T Consensus 226 le-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~--------l--~r~-W~Iq~csA~tGe 293 (312)
T 3l2o_B 226 HE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL--------L--NHP-WLVQDTEAETLT 293 (312)
T ss_dssp CC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGG--------G--CSC-EEEEEEETTTCT
T ss_pred HH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCcc--------C--CCc-EEEEecccCCCc
Confidence 54 2212 22333332 247999999996 68876533222211111110 0 122 568999999999
Q ss_pred CHHHHHHHHHHHhcCC
Q psy8274 200 GLKTVFDEAIRAVLCP 215 (228)
Q Consensus 200 ~v~~lf~~l~~~i~~~ 215 (228)
|+.+.++|+...+...
T Consensus 294 GL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 294 GFLNGIEWILEEVESK 309 (312)
T ss_dssp THHHHHHHHHHHSCC-
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988644
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.96 E-value=1.3e-10 Score=100.71 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=47.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHH-------HHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSM-------AKE 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~ 184 (228)
|.+++|+|++++.....+. . .+ ...|.++|.||+|+........ ...+.... +..
T Consensus 189 d~vl~V~d~~~~~~~~~i~-~---~i----l~~~~ivVlNK~Dl~~~~~~~~----------~~~~l~~~l~~~~~~a~~ 250 (349)
T 2www_A 189 DMFVLLLPPAGGDELQGIK-R---GI----IEMADLVAVTKSDGDLIVPARR----------IQAEYVSALKLLRKRSQV 250 (349)
T ss_dssp SEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHHH----------HHHHHHHHHTTCC-----
T ss_pred CEEEEEEcCCcchhHHHhH-H---HH----HhcCCEEEEeeecCCCchhHHH----------HHHHHHHHHHhcCccccC
Confidence 9999999998764332221 1 11 1458899999999975321000 00001000 011
Q ss_pred hCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 185 IGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 185 ~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
++ .+++++||++|.|++++++++.+.+
T Consensus 251 ~~-~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 251 WK-PKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CC-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CC-ceEEEEecCCCCCHHHHHHHHHHHH
Confidence 23 5789999999999999999998764
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.96 E-value=1.5e-10 Score=99.79 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=49.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC-----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG----- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----- 186 (228)
|++++|+|.++...+. .+.. .. .+.|.++|+||+|+........ ...+.......++
T Consensus 171 D~vl~Vvd~~~~~~~~-----~l~~-~~--~~~p~ivv~NK~Dl~~~~~~~~----------~~~~l~~~l~~~~~~~~~ 232 (341)
T 2p67_A 171 DCFISLQIAGGGDDLQ-----GIKK-GL--MEVADLIVINKDDGDNHTNVAI----------ARHMYESALHILRRKYDE 232 (341)
T ss_dssp SEEEEEECC------C-----CCCH-HH--HHHCSEEEECCCCTTCHHHHHH----------HHHHHHHHHHHSCCSBTT
T ss_pred CEEEEEEeCCccHHHH-----HHHH-hh--hcccCEEEEECCCCCChHHHHH----------HHHHHHHHHHhccccccC
Confidence 9999999997654321 1111 00 1468899999999986422110 0011122122222
Q ss_pred -CceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 187 -AVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 187 -~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..+++++||++|.|++++++.+...+.
T Consensus 233 ~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 233 WQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp BCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 257899999999999999999988653
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.95 E-value=2.3e-09 Score=93.39 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCEEEEEeCCCCC--CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHH
Q psy8274 144 TPIILVGTKLDLR--DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVF 205 (228)
Q Consensus 144 ~piilv~nK~Dl~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf 205 (228)
.|+++++||.|.. +.. +....+.+..+++..| .+++++||++..++.+++
T Consensus 202 KPvi~v~N~~e~d~~~~~-----------~n~~~~~v~~~a~~~g-~~vv~iSAk~E~el~eL~ 253 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDGR-----------GNPQVEAVRRKALEEG-AEVVVVSARLEAELAELS 253 (368)
T ss_dssp SCEEEEEECCGGGTTTCT-----------TCHHHHHHHHHHHHHT-CEEEEECHHHHHHHHTSC
T ss_pred CCeEEeccccHHhhcccc-----------hhhHHHHHHHHHHHcC-CeEEEeechhHHHHHHhc
Confidence 7999999999843 210 1134456777888888 589999998854444433
No 205
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.93 E-value=5e-09 Score=95.78 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.1
Q ss_pred CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.|.+..||++|.||+.+++.++..+..+..
T Consensus 268 ~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~ 298 (548)
T 3vqt_A 268 LTPVFFGSAINNFGVREMLDMFVEFAPGPQP 298 (548)
T ss_dssp EEEEEECBGGGTBSHHHHHHHHHHHSCCSCC
T ss_pred cceeeecccccCcCHHHHHHHHHHhCCCCCC
Confidence 4678899999999999999999999877654
No 206
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.80 E-value=5.5e-09 Score=90.99 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=63.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHH----HHHHHHhCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG----LSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~ 187 (228)
+++++|+|++|+. . .|...+.+...+.|+++|+||+||.... ...++. ..+++..|.
T Consensus 71 ~~il~VvD~~d~~-----~-~~~~~l~~~~~~~p~ilV~NK~DL~~~~-------------~~~~~~~~~l~~~~~~~g~ 131 (368)
T 3h2y_A 71 ALVVKIVDIFDFN-----G-SWLPGLHRFVGNNKVLLVGNKADLIPKS-------------VKHDKVKHWMRYSAKQLGL 131 (368)
T ss_dssp CEEEEEEETTSHH-----H-HCCTTHHHHSSSSCEEEEEECGGGSCTT-------------SCHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEEECCCCc-----c-cHHHHHHHHhCCCcEEEEEEChhcCCcc-------------cCHHHHHHHHHHHHHHcCC
Confidence 7999999999853 2 7888888877789999999999997532 222233 333566674
Q ss_pred --ceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 188 --VKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 188 --~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..++++||++|.|++++++.+....
T Consensus 132 ~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 132 KPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp CCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 2789999999999999999987654
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.76 E-value=2e-09 Score=101.30 Aligned_cols=83 Identities=19% Similarity=0.087 Sum_probs=54.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHH---HHHHhCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS---MAKEIGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~ 188 (228)
|++++|.|++++.+-.+.. .++..+... +.|+++|.||+|+..... .. .+... +...+++.
T Consensus 189 DlIL~VVDAs~~~~~~d~l-~ll~~L~~~--g~pvIlVlNKiDlv~~~~------------~~-~~il~~~~~~l~lg~~ 252 (772)
T 3zvr_A 189 CLILAVSPANSDLANSDAL-KIAKEVDPQ--GQRTIGVITKLDLMDEGT------------DA-RDVLENKLLPLRRGYI 252 (772)
T ss_dssp EEEEEEEETTSCSSSCHHH-HHHHHHCTT--CSSEEEEEECTTSSCTTC------------CS-HHHHTTCSSCCSSCEE
T ss_pred cEEEEEEcCCCCcchhHHH-HHHHHHHhc--CCCEEEEEeCcccCCcch------------hh-HHHHHHHhhhhhccCC
Confidence 9999999998754433322 334444433 689999999999986432 11 11111 00012445
Q ss_pred eEEEecccCCCCHHHHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~ 210 (228)
+++.+||++|.|++++++.+..
T Consensus 253 ~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 253 GVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp ECCCCCCEESSSSEEHHHHHHH
T ss_pred ceEEecccccccchhHHHHHHH
Confidence 6788999999999999999886
No 208
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.75 E-value=5e-08 Score=85.07 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=70.8
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|++++... ..+|..|+.+.....+.+++. .+++.||||-..- +
T Consensus 82 NvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~----------a---------------- 133 (376)
T 4a9a_A 82 SVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDG----------A---------------- 133 (376)
T ss_dssp CHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC---------------------------
T ss_pred CCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCC----------c----------------
Confidence 7999999999997653 455666665555666777774 5678899995321 1
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh---CCCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH---CPSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~ 156 (228)
..+.+++..|...++.. |++++|.|++++..-.. .+..+|... ..+.|.+++.||.|..
T Consensus 134 --~~~~~~g~~~l~~i~~a-------------d~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 134 --KDGRGRGKQVIAVARTC-------------NLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp ------CHHHHHHHHHHHC-------------SEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred --hhhhHHHHHHHHHHHhc-------------CccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 23344444555555543 99999999998744322 223334433 2357888899999964
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.70 E-value=8.7e-09 Score=95.82 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=26.7
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
...|.+..||++|.||+.+++.+...+..+..
T Consensus 211 ~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~ 242 (638)
T 3j25_A 211 SLFPLYHGSAKSNIGIDNLIEVITNKFYSSTH 242 (638)
T ss_dssp SCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGG
T ss_pred ccccccccccccCCCchhHhhhhhccccCccc
Confidence 34688899999999999999999987765543
No 210
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.65 E-value=2.5e-08 Score=86.79 Aligned_cols=82 Identities=26% Similarity=0.380 Sum_probs=62.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHH----HHHHHHhCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG----LSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~ 187 (228)
+++++|+|++|+.+ .|...+.+...+.|+++|+||+|+.... ...+.. ..+++..|.
T Consensus 73 ~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-------------~~~~~~~~~l~~~~~~~g~ 133 (369)
T 3ec1_A 73 ALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-------------VKYPKLLRWMRRMAEELGL 133 (369)
T ss_dssp CEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-------------CCHHHHHHHHHHHHHTTTC
T ss_pred cEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-------------cCHHHHHHHHHHHHHHcCC
Confidence 89999999999763 5666777776689999999999997642 222222 334556674
Q ss_pred --ceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 188 --VKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 188 --~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..++++||++|.|++++++.+....
T Consensus 134 ~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 134 CPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp CCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3689999999999999999987654
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.61 E-value=3.1e-08 Score=85.24 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=47.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh---C--
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI---G-- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~-- 186 (228)
|.+++|+|....+....+. ..+. ..|.+++.||+|+..... ......+.+.... .
T Consensus 170 d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivvlNK~Dl~~~~~------------~s~~~~~~l~~a~~l~~~~ 229 (337)
T 2qm8_A 170 DFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVNKADDGDGER------------RASAAASEYRAALHILTPP 229 (337)
T ss_dssp SEEEEEECSCC------CC----TTHH----HHCSEEEEECCSTTCCHH------------HHHHHHHHHHHHHTTBCCS
T ss_pred CEEEEEEcCCCcccHHHHH----HHHh----ccccEEEEEchhccCchh------------HHHHHHHHHHHHHHhcccc
Confidence 9999999986543322111 1111 235677779999764321 1111122222211 1
Q ss_pred ----CceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 187 ----AVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 187 ----~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..+++.+||+++.|++++++.+.+..
T Consensus 230 ~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 230 SATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp BTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 25789999999999999999988754
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.44 E-value=1.4e-06 Score=81.85 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.1
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
...|.+..||..+.|+..+++.++..+..+..
T Consensus 263 ~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~ 294 (709)
T 4fn5_A 263 EIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTE 294 (709)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHSCCTTS
T ss_pred eeeeeeeeecccCCchHHHHHHHHhhCCCCcc
Confidence 34678889999999999999999998876643
No 213
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.28 E-value=1.3e-06 Score=73.20 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=58.7
Q ss_pred ceEEEEEecCChhhHHH--HHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 112 DVFQICFSLVNPASFEN--VRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~--~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
|++++|+|+.++.+..+ +. +| ..+.|+++|.||+||.+... .+....+.+..| .+
T Consensus 25 DvVl~VvDAr~p~~~~~~~l~-~~-------l~~kp~ilVlNK~DL~~~~~--------------~~~~~~~~~~~g-~~ 81 (282)
T 1puj_A 25 DIVYELVDARIPMSSRNPMIE-DI-------LKNKPRIMLLNKADKADAAV--------------TQQWKEHFENQG-IR 81 (282)
T ss_dssp SEEEEEEETTSTTTTSCHHHH-HH-------CSSSCEEEEEECGGGSCHHH--------------HHHHHHHHHTTT-CC
T ss_pred CEEEEEEeCCCCCccCCHHHH-HH-------HCCCCEEEEEECcccCCHHH--------------HHHHHHHHHhcC-Cc
Confidence 99999999999888753 22 33 25799999999999987421 122234444557 48
Q ss_pred EEEecccCCCCHHHHHHHHHHHhc
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++++||+++.|+++++..+.+.+.
T Consensus 82 ~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 82 SLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHHH
Confidence 999999999999999988776553
No 214
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.25 E-value=2.8e-07 Score=80.75 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=25.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCc-eeeeccceeEEEcCe---------------EEeeeeeeCCCCcccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGK---------------PINLGLWDTAGQEDYD 53 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 53 (228)
|||||||+|++++..+.....| +..+.....+.+++. ...+.+||++|.....
T Consensus 32 nvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 32 NVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 7999999999998765332222 222222333444332 2358999999987543
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.81 E-value=1.2e-05 Score=66.67 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=54.3
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+|++++|+|+.++.+..... +. + . ++|.++|.||+||.+... .+....+.+..|. ++
T Consensus 22 ~D~vl~VvDar~P~~~~~~~---l~-l---l-~k~~iivlNK~DL~~~~~--------------~~~~~~~~~~~g~-~v 78 (262)
T 3cnl_A 22 VNTVVEVRDARAPFATSAYG---VD-F---S-RKETIILLNKVDIADEKT--------------TKKWVEFFKKQGK-RV 78 (262)
T ss_dssp CSEEEEEEETTSTTTTSCTT---SC-C---T-TSEEEEEEECGGGSCHHH--------------HHHHHHHHHHTTC-CE
T ss_pred CCEEEEEeeCCCCCcCcChH---HH-h---c-CCCcEEEEECccCCCHHH--------------HHHHHHHHHHcCC-eE
Confidence 39999999999987765421 11 1 1 789999999999987421 1122344455674 67
Q ss_pred EEecccCCCCHHHHHHHHHH
Q psy8274 191 LECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~ 210 (228)
.+||+++.|+++++..+..
T Consensus 79 -~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 79 -ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp -EECCTTSCHHHHHHHHCCC
T ss_pred -EEECCCCcCHHHHHHHHHH
Confidence 9999999999998877644
No 216
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.77 E-value=1.5e-05 Score=67.49 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=56.8
Q ss_pred CCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 109 KRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
.|+|.+++|+|+.+|..-....+.++...... ++|.+||.||+||.+..... ....+...+.+..| .
T Consensus 85 anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~~~----------~~~~~~~~~y~~~g-~ 151 (307)
T 1t9h_A 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDTE----------DTIQAYAEDYRNIG-Y 151 (307)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHHH----------HHHHHHHHHHHHHT-C
T ss_pred HhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhhhH----------HHHHHHHHHHHhCC-C
Confidence 45599999999986655333433555444333 78889999999998752100 00123344455568 4
Q ss_pred eEEEecccCCCCHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDE 207 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~ 207 (228)
+.+.+||.++.|+++++..
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 8999999999998876643
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.72 E-value=3.7e-05 Score=69.41 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=47.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE-EEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI-ILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|.+++|.|.+...... .....+... .|+ .+|.||+|...... .+.......+.
T Consensus 215 d~vllVvDa~~g~~~~----~~a~~~~~~---~~i~gvVlNK~D~~~~~g----------------~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 215 DNIVYVMDASIGQACE----AQAKAFKDK---VDVASVIVTKLDGHAKGG----------------GALSAVAATKSPII 271 (504)
T ss_dssp SEEEEEEETTCCTTHH----HHHHHHHHH---HCCCCEEEECTTSCCCCT----------------HHHHHHHHHCCCEE
T ss_pred ceEEEEEeccccccHH----HHHHHHHhh---cCceEEEEeCCccccchH----------------HHHHHHHHhCCCeE
Confidence 9999999998754321 222233332 675 78899999875321 01112222221
Q ss_pred --------------ceEEEecccCCCC-HHHHHHHHHHH
Q psy8274 188 --------------VKYLECSALTQKG-LKTVFDEAIRA 211 (228)
Q Consensus 188 --------------~~~~evSa~~~~~-v~~lf~~l~~~ 211 (228)
.+...+|+..|.| +.++++++.+.
T Consensus 272 fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 272 FIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1234579999999 99999998765
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.59 E-value=1.6e-05 Score=69.01 Aligned_cols=43 Identities=2% Similarity=-0.155 Sum_probs=26.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
++++++.|....-.+..+ ..+..+.. .+.|++++.||.|....
T Consensus 247 ~~~~~~l~~~~~~~~g~l--~~l~~l~~--~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 247 HPRVYQLNEGQTLFFGGL--ARLDYIKG--GRRSFVCYMANELTVHR 289 (369)
T ss_dssp CCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEE
T ss_pred CceEEEEcCCceEEECCE--EEEEEccC--CCceEEEEecCCccccc
Confidence 888999887432111122 11222222 25799999999998764
No 219
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.50 E-value=0.0004 Score=59.98 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=53.9
Q ss_pred CCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 109 KRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
-|+|.+++|.... |..-....+.++-..... ++|++||.||+||.+.... + ..++.....+..| .
T Consensus 129 anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~-~----------~~~~~~~~y~~~G-~ 193 (358)
T 2rcn_A 129 ANIDQIVIVSAIL-PELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGM-D----------FVNEQMDIYRNIG-Y 193 (358)
T ss_dssp ECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHH-H----------HHHHHHHHHHTTT-C
T ss_pred hcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhH-H----------HHHHHHHHHHhCC-C
Confidence 4569999887654 444333333555444444 6788999999999875210 0 0112233344567 4
Q ss_pred eEEEecccCCCCHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDE 207 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~ 207 (228)
+++.+||.++.|++++...
T Consensus 194 ~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 194 RVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp CEEECBTTTTBTHHHHHHH
T ss_pred cEEEEecCCCcCHHHHHHh
Confidence 7999999999999988764
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.41 E-value=0.00039 Score=61.39 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=26.3
Q ss_pred eEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 113 VFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 113 ~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
+++|+.|...+-+-.++ .++..+. .++|+|+|.||+|...+.+
T Consensus 151 ~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp EEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCHHH
T ss_pred EEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccchHH
Confidence 36667676544443333 3444443 4789999999999887543
No 221
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.36 E-value=0.00013 Score=63.78 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCChhhhHHhhhhCCC-CC-CCCceeeeccceeEEEcCeE---------------EeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAF-PG-EYIPTVFDNYSANVMVDGKP---------------INLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~ 51 (228)
|||||||+|.+++..+ .. .+..+..+.....+.+++.. ..+.+||++|...
T Consensus 30 naGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 30 NVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 7999999999998765 32 33333333334455555421 3578999999653
No 222
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.36 E-value=1.6e-05 Score=68.94 Aligned_cols=43 Identities=5% Similarity=-0.107 Sum_probs=25.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+.++++.|....-.+..+ ..+..+.. .+.|++++.||.|....
T Consensus 246 ~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 246 KPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp CCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEE
T ss_pred CceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCcccccc
Confidence 778888876322111121 11222222 25799999999998864
No 223
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.04 E-value=0.0022 Score=53.03 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=29.1
Q ss_pred CCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
++++.+++.|.+. .++..+...++..+... .++++|.+|+|.....+
T Consensus 111 Ral~~lllldep~-~gL~~lD~~~l~~L~~~---~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 111 RVHCCLYFISPTG-HSLRPLDLEFMKHLSKV---VNIIPVIAKADTMTLEE 157 (270)
T ss_dssp SCCEEEEEECCCS-SSCCHHHHHHHHHHHTT---SEEEEEETTGGGSCHHH
T ss_pred eeeeeeEEEecCC-CcCCHHHHHHHHHHHhc---CcEEEEEeccccCCHHH
Confidence 3477888888541 12222221444555443 89999999999887543
No 224
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.03 E-value=0.0038 Score=54.83 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=40.8
Q ss_pred HHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHH----HHH----HHhC--CceEEEecc--cCCCCH
Q psy8274 134 YPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL----SMA----KEIG--AVKYLECSA--LTQKGL 201 (228)
Q Consensus 134 ~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~----~~~----~~~~--~~~~~evSa--~~~~~v 201 (228)
...+.+. +.|+++|.||.|+.--.+ -. .........+.. .+. .+.| ....+.+|+ ..+.|+
T Consensus 168 a~aL~~~--~~p~~lV~tkpdlllLDE---Pt--sgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~ 240 (413)
T 1tq4_A 168 AKAISMM--KKEFYFVRTKVDSDITNE---AD--GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 240 (413)
T ss_dssp HHHHHHT--TCEEEEEECCHHHHHHHH---HT--TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTH
T ss_pred HHHHHhc--CCCeEEEEecCcccccCc---cc--ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCH
Confidence 3344443 689999999999651100 00 000112222222 222 1222 235788999 677789
Q ss_pred HHHHHHHHHHhc
Q psy8274 202 KTVFDEAIRAVL 213 (228)
Q Consensus 202 ~~lf~~l~~~i~ 213 (228)
+++.+.+...+.
T Consensus 241 e~L~d~I~~~Lp 252 (413)
T 1tq4_A 241 PVLMDKLISDLP 252 (413)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhCc
Confidence 999999987664
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.92 E-value=0.0036 Score=55.44 Aligned_cols=67 Identities=12% Similarity=-0.018 Sum_probs=39.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.+++|.|.+....-... ...+... -.+..+|.||.|..... ..+..+....+ .|+.
T Consensus 214 d~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~~~g----------------G~~ls~~~~~g-~PI~ 270 (443)
T 3dm5_A 214 HEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGSAKG----------------GGALSAVAATG-APIK 270 (443)
T ss_dssp SEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSCSSH----------------HHHHHHHHTTC-CCEE
T ss_pred ceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCcccc----------------cHHHHHHHHHC-CCEE
Confidence 899999998865433222 2223322 23456888999987642 12344455567 4777
Q ss_pred EecccCCCCHHH
Q psy8274 192 ECSALTQKGLKT 203 (228)
Q Consensus 192 evSa~~~~~v~~ 203 (228)
.++. |+++++
T Consensus 271 fig~--Ge~vdd 280 (443)
T 3dm5_A 271 FIGT--GEKIDD 280 (443)
T ss_dssp EEEC--SSSTTC
T ss_pred EEEc--CCChHH
Confidence 6764 555543
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.72 E-value=0.0012 Score=58.42 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=25.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCC-C-EEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPST-P-IILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~-p-iilv~nK~Dl~~ 157 (228)
|.+++|.|.+.... .. .. +...+... | ..+|.||+|...
T Consensus 212 d~vllVvda~~g~~---~~-~~---~~~~~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 212 DEIILVIDGTIGQQ---AG-IQ---AKAFKEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SEEEEEEEGGGGGG---HH-HH---HHHHHTTSCSCEEEEEECSSSCS
T ss_pred cceeEEeeccccHH---HH-HH---HHHHhhcccCCeEEEEeCCCCcc
Confidence 99999999876532 11 11 22222335 6 788999999865
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.42 E-value=0.0014 Score=53.98 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=26.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
|||||||+|++.+..... ..++.+.+.. ..+.++. .+.+|||||...
T Consensus 109 ~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 109 NTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp TSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred CCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 799999999999766531 2222232222 1223332 688999999754
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.12 E-value=0.0038 Score=51.98 Aligned_cols=46 Identities=24% Similarity=0.127 Sum_probs=25.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
|||||||+|++++..... ..+..+.+. ...+.++. .+.+|||||..
T Consensus 130 nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 130 NVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp TSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 799999999999765321 111111111 11233333 57899999974
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.77 E-value=0.012 Score=52.02 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=39.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
+.+++|.|.+.......+ ...+... -.+..+|.||.|..... ..+.......+ .|+.
T Consensus 213 d~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a~~----------------G~als~~~~~g-~Pi~ 269 (433)
T 3kl4_A 213 DDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTAKG----------------GGALSAVVATG-ATIK 269 (433)
T ss_dssp SEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCSCH----------------HHHHHHHHHHT-CEEE
T ss_pred cceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEecccccccc----------------hHHHHHHHHHC-CCEE
Confidence 899999999865332222 2233322 24567889999987531 23455555667 5777
Q ss_pred EecccCCCCH
Q psy8274 192 ECSALTQKGL 201 (228)
Q Consensus 192 evSa~~~~~v 201 (228)
.++. |+++
T Consensus 270 fig~--Ge~v 277 (433)
T 3kl4_A 270 FIGT--GEKI 277 (433)
T ss_dssp EEEC--CSSS
T ss_pred EEEC--CCCh
Confidence 7775 5554
No 230
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.00 E-value=0.0017 Score=57.81 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=22.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
.+.++|+|.++. +..... .|...+... ..+++.+-
T Consensus 122 ~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 122 GGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp CCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEE
T ss_pred CCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEE
Confidence 788999999987 555544 676666655 34444443
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.88 E-value=0.015 Score=53.30 Aligned_cols=52 Identities=23% Similarity=0.079 Sum_probs=28.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEE----E-cCeEEeeeeeeCCCCccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----V-DGKPINLGLWDTAGQEDY 52 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~~~i~D~~g~~~~ 52 (228)
|||||||+|++++....-...+|.......... + ......+.++||||-...
T Consensus 48 nvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 48 RTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp TSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 799999999999765311222222111111111 1 122246788999997654
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.18 E-value=0.096 Score=44.42 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=39.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|-.+++.|.+...... .....+.+. ...-+++.||.|.... ...+.......+ .|+.
T Consensus 243 de~llvLDa~t~~~~~----~~~~~~~~~--~~it~iilTKlD~~a~----------------~G~~l~~~~~~~-~pi~ 299 (328)
T 3e70_C 243 NLVIFVGDALAGNAIV----EQARQFNEA--VKIDGIILTKLDADAR----------------GGAALSISYVID-APIL 299 (328)
T ss_dssp SEEEEEEEGGGTTHHH----HHHHHHHHH--SCCCEEEEECGGGCSC----------------CHHHHHHHHHHT-CCEE
T ss_pred CCCEEEEecHHHHHHH----HHHHHHHHh--cCCCEEEEeCcCCccc----------------hhHHHHHHHHHC-CCEE
Confidence 8889999987653222 222233322 1223667799996432 223556677778 5777
Q ss_pred EecccCCCCHHH
Q psy8274 192 ECSALTQKGLKT 203 (228)
Q Consensus 192 evSa~~~~~v~~ 203 (228)
.++ +|+++++
T Consensus 300 ~i~--~Ge~v~d 309 (328)
T 3e70_C 300 FVG--VGQGYDD 309 (328)
T ss_dssp EEE--CSSSTTC
T ss_pred EEe--CCCCccc
Confidence 776 6766654
No 233
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.32 E-value=1.4 Score=40.34 Aligned_cols=16 Identities=38% Similarity=0.262 Sum_probs=13.7
Q ss_pred CCCEEEEEeCCCCCCc
Q psy8274 143 STPIILVGTKLDLRDD 158 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~ 158 (228)
..+.|+|.||.|+.+.
T Consensus 214 g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 214 GDRTIGILTKPDLVDK 229 (608)
T ss_dssp CCSEEEEEECGGGSSS
T ss_pred CCceEEEecchhhcCc
Confidence 5789999999998864
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=88.90 E-value=0.3 Score=43.16 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
++|||+|+|++++.
T Consensus 77 ~~GKStLLN~llg~ 90 (447)
T 3q5d_A 77 RKGKSFLMDFMLRY 90 (447)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhh
Confidence 68999999999863
No 235
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.23 E-value=1 Score=37.45 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=39.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
|.+++|.|.+..... . .....+.. ..| ..+|.||.|.... ...+..+....+ .|+
T Consensus 214 d~vllVvda~~g~~~---~-~~~~~~~~---~~~i~gvVlnk~D~~~~----------------~g~~~~~~~~~~-~pi 269 (297)
T 1j8m_F 214 DEVTLVIDASIGQKA---Y-DLASKFNQ---ASKIGTIIITKMDGTAK----------------GGGALSAVAATG-ATI 269 (297)
T ss_dssp SEEEEEEEGGGGGGH---H-HHHHHHHH---TCTTEEEEEECGGGCTT----------------HHHHHHHHHTTT-CCE
T ss_pred CEEEEEeeCCchHHH---H-HHHHHHHh---hCCCCEEEEeCCCCCcc----------------hHHHHHHHHHHC-cCE
Confidence 999999998743221 1 11222222 356 6688899997643 123455666777 477
Q ss_pred EEecccCCCCHHH
Q psy8274 191 LECSALTQKGLKT 203 (228)
Q Consensus 191 ~evSa~~~~~v~~ 203 (228)
..++ +|+++++
T Consensus 270 ~~i~--~Ge~v~d 280 (297)
T 1j8m_F 270 KFIG--TGEKIDE 280 (297)
T ss_dssp EEEE--CSSSTTC
T ss_pred EEEe--CCCChhh
Confidence 7775 5666654
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=79.90 E-value=0.59 Score=35.37 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 15 GsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 15 GVGRRHIKNTLITK 28 (180)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999863
No 237
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=77.79 E-value=0.74 Score=34.97 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+.
T Consensus 11 GaGKsTl~~~L~~~ 24 (186)
T 3a00_A 11 GTGKSTLLKKLFAE 24 (186)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999863
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=77.41 E-value=0.78 Score=34.96 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=12.1
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+-
T Consensus 10 GsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 10 GVGKTTLVKKIVER 23 (178)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988853
No 239
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=77.22 E-value=2.4 Score=32.13 Aligned_cols=43 Identities=9% Similarity=-0.154 Sum_probs=29.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhh---CCCCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHH---CPSTPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~~ 157 (228)
|.++++...+... ..+. .++..+... ++..++.+|.|+.|...
T Consensus 99 d~viiv~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 99 DLVIIPVTPSPLD--FSAA-GSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp SEEEEEECSCTTT--HHHH-HHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CEEEEEecCCHHH--HHHH-HHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 9999999875443 4554 555555543 34567789999999643
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=77.04 E-value=0.8 Score=34.96 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+.
T Consensus 17 GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 17 GAGKTSLVRALVKA 30 (205)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999874
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=77.03 E-value=0.81 Score=35.30 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=12.0
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 14 GaGKSTLl~~L~~ 26 (198)
T 1lvg_A 14 GAGKSTLLKKLFQ 26 (198)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999886
No 242
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=76.94 E-value=0.82 Score=34.86 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||+++++..
T Consensus 16 GsGKTTl~~~l~~~ 29 (174)
T 1np6_A 16 GTGKTTLLKKLIPA 29 (174)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999999863
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.54 E-value=0.85 Score=34.42 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 19 GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 19 GSGKSTIAEALANL 32 (191)
T ss_dssp TSCHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999999874
No 244
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=76.30 E-value=0.94 Score=35.62 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=29.9
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 100 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (228)
++.+|++++ +.+.++||++|.||++.|...++.+..
T Consensus 141 ~~~~a~~~~-~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 141 GERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHT-CEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred HhhHHHHhC-CeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 677888876 469999999999999999999888653
No 245
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=75.35 E-value=0.97 Score=33.81 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.0
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++-+.+..
T Consensus 43 GaGKTTLlr~l~g~l 57 (158)
T 1htw_A 43 GAGKTTLTRGMLQGI 57 (158)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC
Confidence 799999999998754
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=74.63 E-value=1 Score=34.82 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+-
T Consensus 30 GsGKSTLl~~l~gl 43 (207)
T 1znw_A 30 AVGKSTVVRCLRER 43 (207)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999998864
No 247
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=74.21 E-value=1.1 Score=33.04 Aligned_cols=25 Identities=12% Similarity=-0.072 Sum_probs=16.7
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.++.+.+. +..++++...+...+..
T Consensus 142 ~~~~id~~-~~~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 142 HTYSWDTG-QWSSDEIAKDIIFLVEL 166 (173)
T ss_dssp CEEEEETT-TSCHHHHHHHHHHHHHH
T ss_pred CEEEEECC-CCCHHHHHHHHHHHHhC
Confidence 45566542 24789999988887654
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=74.03 E-value=1.1 Score=34.69 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 32 GsGKSTl~~~l~~ 44 (208)
T 3c8u_A 32 GSGKSTLSNPLAA 44 (208)
T ss_dssp TSCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=73.98 E-value=0.96 Score=33.94 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=10.6
Q ss_pred CCChhhhHHhhh
Q psy8274 1 AVGKTCLLISYT 12 (228)
Q Consensus 1 gvGKTsli~~~~ 12 (228)
|+|||||++.+.
T Consensus 19 GsGKSTl~~~~~ 30 (171)
T 4gp7_A 19 GSGKSTFAKKHF 30 (171)
T ss_dssp TSCHHHHHHHHS
T ss_pred CCCHHHHHHHHc
Confidence 899999999865
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=73.91 E-value=1.1 Score=35.45 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+.
T Consensus 26 GsGKSTLlk~L~g~ 39 (219)
T 1s96_A 26 GAGKSSLIQALLKT 39 (219)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcc
Confidence 89999999998864
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=73.38 E-value=1.1 Score=35.04 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+-
T Consensus 33 GsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 33 GVGKGTLIKKLLNE 46 (218)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999873
No 252
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=72.95 E-value=22 Score=31.66 Aligned_cols=122 Identities=15% Similarity=0.184 Sum_probs=72.1
Q ss_pred cchhHHhhcchhhhhccccccccch-hHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC----------------C----
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLK-TVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV----------------N---- 122 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt----------------~---- 122 (228)
+.++|-+.. -+..|-+..|-+++ |.|.+..-+..+..| |++++|--+- |
T Consensus 273 Atk~ALkla--DyvVTEAGFGADlGaEKF~dIKCR~~gl~P--------~avVlVATvRALK~hGG~~~~~l~~enl~al 342 (543)
T 3do6_A 273 ATKMAMKLS--EYTVTEAGFGADLGAEKFIDFVSRVGGFYP--------NAAVLVATVRALKYHGGANLKNIHEENLEAL 342 (543)
T ss_dssp HHHHHHHHC--SEEEEEBSSSTTTHHHHHHHTHHHHHTCCC--------SEEEEEECHHHHHHHTTCCGGGTTSCCHHHH
T ss_pred HHHHHHhcc--CeEEEecccccccchHhhcCccccccCCCC--------CEEEEEeehHHHHhcCCCChhhcCccCHHHH
Confidence 344444443 22333344444432 445555555556668 9999997321 1
Q ss_pred hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEec--ccCCCC
Q psy8274 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECS--ALTQKG 200 (228)
Q Consensus 123 ~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evS--a~~~~~ 200 (228)
...+.++. +.++.++++ .+|++|+.|+..-..+. ..+....+|++.|+ .+..+. ++-|+|
T Consensus 343 ~~G~~NL~-kHIen~~~f--GvpvVVaiN~F~tDT~a--------------Ei~~v~~~~~~~G~-~~~~s~~wa~GG~G 404 (543)
T 3do6_A 343 KEGFKNLR-VHVENLRKF--NLPVVVALNRFSTDTEK--------------EIAYVVKECEKLGV-RVAVSEVFKKGSEG 404 (543)
T ss_dssp HHHHHHHH-HHHHHHHHT--TCCEEEEEECCTTCCHH--------------HHHHHHHHHHTTTC-EEEEECHHHHGGGG
T ss_pred HHHHHHHH-HHHHHHHHc--CCCeEEEEeCCCCCCHH--------------HHHHHHHHHHHcCC-CEEEechhhccchh
Confidence 12234444 444555554 89999999998766542 23456788888885 554332 456788
Q ss_pred HHHHHHHHHHHhc
Q psy8274 201 LKTVFDEAIRAVL 213 (228)
Q Consensus 201 v~~lf~~l~~~i~ 213 (228)
-.++-+.+++.+-
T Consensus 405 ~~~LA~~Vv~~~e 417 (543)
T 3do6_A 405 GVELAKAVAEAAK 417 (543)
T ss_dssp SHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhc
Confidence 8888888888765
No 253
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.81 E-value=1.2 Score=34.25 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 16 GsGKSTl~~~l~~ 28 (211)
T 3asz_A 16 ASGKTTLAQALAR 28 (211)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998876
No 254
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=72.74 E-value=1.2 Score=34.71 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 29 GaGKsTL~~~L~~~ 42 (197)
T 3ney_A 29 GVGRSHIKNALLSQ 42 (197)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999864
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=72.34 E-value=1.2 Score=34.43 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=12.6
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 18 GsGKsTl~~~L~~~ 31 (208)
T 3tau_A 18 GVGKGTVREAVFKD 31 (208)
T ss_dssp TSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999864
No 256
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=72.09 E-value=1.2 Score=38.11 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=12.6
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|||||||+|.+.+.
T Consensus 225 G~GKSTLln~L~g~ 238 (358)
T 2rcn_A 225 GVGKSSLLNALLGL 238 (358)
T ss_dssp TSSHHHHHHHHHCC
T ss_pred CccHHHHHHHHhcc
Confidence 89999999999864
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=71.97 E-value=1.2 Score=36.84 Aligned_cols=12 Identities=42% Similarity=0.628 Sum_probs=11.5
Q ss_pred CCChhhhHHhhh
Q psy8274 1 AVGKTCLLISYT 12 (228)
Q Consensus 1 gvGKTsli~~~~ 12 (228)
|+|||||+|.+.
T Consensus 175 G~GKSTLln~l~ 186 (302)
T 2yv5_A 175 GVGKSSILSRLT 186 (302)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999999998
No 258
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=71.44 E-value=1.4 Score=32.70 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=12.0
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 12 GsGKST~a~~L~~ 24 (181)
T 1ly1_A 12 GSGKSTWAREFIA 24 (181)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999986
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=71.42 E-value=1.3 Score=32.43 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=10.5
Q ss_pred CCChhhhHHhh
Q psy8274 1 AVGKTCLLISY 11 (228)
Q Consensus 1 gvGKTsli~~~ 11 (228)
|+||||+++.+
T Consensus 11 GsGKsT~a~~L 21 (179)
T 3lw7_A 11 GSGKSEFAKLL 21 (179)
T ss_dssp TSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 89999999998
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=71.34 E-value=1.4 Score=33.31 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+..
T Consensus 12 GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 12 GVGKSTTCKRLAA 24 (189)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHhc
Confidence 8999999999975
No 261
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=71.16 E-value=1.4 Score=33.48 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+.++..
T Consensus 14 GsGKTTl~~~L~~ 26 (169)
T 1xjc_A 14 HSGKTTLMEKWVA 26 (169)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999885
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=71.15 E-value=1.4 Score=32.60 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=12.1
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||.+.+...
T Consensus 14 GsGKSTl~~~La~~ 27 (173)
T 1kag_A 14 GAGKSTIGRQLAQQ 27 (173)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998763
No 263
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=71.09 E-value=1.4 Score=33.03 Aligned_cols=14 Identities=36% Similarity=0.442 Sum_probs=12.1
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+.+.
T Consensus 48 G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 48 GVGKTHLAVATLKA 61 (180)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988753
No 264
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=70.98 E-value=1.4 Score=33.56 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 16 GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 16 GVGKGTVRKRIFED 29 (207)
T ss_dssp TSCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999998764
No 265
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=70.92 E-value=1.4 Score=33.70 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=12.1
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+++.+...
T Consensus 28 GsGKSTla~~L~~~ 41 (202)
T 3t61_A 28 GSGKSSVGEAIAEA 41 (202)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998753
No 266
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=70.82 E-value=1.4 Score=33.87 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|||||||++.+...
T Consensus 22 GsGKsTl~~~L~~~ 35 (204)
T 2qor_A 22 GVGKGTLIKKVLSE 35 (204)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999999763
No 267
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=70.29 E-value=1.5 Score=32.58 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+.+.+...
T Consensus 13 GsGKST~a~~La~~ 26 (178)
T 1qhx_A 13 SAGKSGIVRCLQSV 26 (178)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999998763
No 268
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=69.71 E-value=1.5 Score=36.63 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=13.2
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++.+.+..
T Consensus 14 GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 14 GAGKTTLLRHILNEQ 28 (318)
T ss_dssp SSSCHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHhhc
Confidence 899999999999753
No 269
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=69.58 E-value=1.5 Score=34.66 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 40 GsGKSTLl~~l~G 52 (224)
T 2pcj_A 40 GSGKSTLLYILGL 52 (224)
T ss_dssp TSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999998875
No 270
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=69.56 E-value=1.6 Score=33.10 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=16.3
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..+.+.+.. .++++...+...+.
T Consensus 177 ~~~~Id~~~--~~~~v~~~I~~~l~ 199 (205)
T 2jaq_A 177 PFFVVDAEL--DVKTQIELIMNKLN 199 (205)
T ss_dssp CEEEEETTS--CHHHHHHHHHHHHH
T ss_pred cEEEEECCC--CHHHHHHHHHHHHH
Confidence 466665443 78999998887664
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=69.53 E-value=1.6 Score=32.71 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 11 GsGKsT~~~~L~~ 23 (194)
T 1nks_A 11 GVGKSTVLAKVKE 23 (194)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=69.24 E-value=1.6 Score=33.43 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=17.3
Q ss_pred EEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+.+.. + ..++++...+...+...
T Consensus 171 ~~~Id~-~-~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 171 GIVLDL-R-QPPEQLIERALTWLDIA 194 (200)
T ss_dssp EEEEET-T-SCHHHHHHHHHHHHCCC
T ss_pred eEEEEC-C-CCHHHHHHHHHHHHHhc
Confidence 455554 2 38999999999887654
No 273
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=69.12 E-value=1.5 Score=34.85 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 41 GsGKSTLl~~l~G 53 (235)
T 3tif_A 41 GSGKSTMLNIIGC 53 (235)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhc
Confidence 8999999998875
No 274
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=68.48 E-value=1.7 Score=33.59 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=13.0
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++.+....
T Consensus 35 GsGKSTll~~l~g~~ 49 (231)
T 4a74_A 35 GSGKTQLAHTLAVMV 49 (231)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH
Confidence 799999999998743
No 275
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=68.29 E-value=1.7 Score=34.78 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 34 GsGKSTLl~~l~Gl 47 (240)
T 2onk_A 34 GAGKSVFLELIAGI 47 (240)
T ss_dssp TSSHHHHHHHHHTS
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999998763
No 276
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=68.26 E-value=0.76 Score=38.47 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|||||||+|.+...
T Consensus 183 G~GKSTLln~L~g~ 196 (307)
T 1t9h_A 183 GVGKSSLLNAISPE 196 (307)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHhccc
Confidence 78999999999864
No 277
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=68.24 E-value=1.6 Score=36.15 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||+|.+.+.
T Consensus 179 G~GKSTll~~l~g~ 192 (301)
T 1u0l_A 179 GVGKSSLLNAINPG 192 (301)
T ss_dssp TSSHHHHHHHHSTT
T ss_pred CCcHHHHHHHhccc
Confidence 89999999999864
No 278
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=68.05 E-value=1.7 Score=34.04 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.++.
T Consensus 40 GsGKSTLl~~i~~ 52 (251)
T 2ehv_A 40 GTGKTTFAAQFIY 52 (251)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998883
No 279
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=68.04 E-value=1.8 Score=33.86 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 32 GsGKSTLl~~l~Gl 45 (208)
T 3b85_A 32 GSGKTYLAMAKAVQ 45 (208)
T ss_dssp TSSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHhcC
Confidence 89999999998864
No 280
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=67.88 E-value=1.8 Score=33.36 Aligned_cols=13 Identities=38% Similarity=0.504 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 11 G~GKTTll~~l~g 23 (189)
T 2i3b_A 11 GVGKTTLIHKASE 23 (189)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHh
Confidence 8999999998875
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=67.71 E-value=1.8 Score=32.35 Aligned_cols=13 Identities=23% Similarity=0.043 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 13 GsGKsT~~~~L~~ 25 (192)
T 1kht_A 13 GVGSTTSSQLAMD 25 (192)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 282
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=67.58 E-value=1.8 Score=31.88 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=12.1
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 53 G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 53 GVGKTAIVEGLAQR 66 (195)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988754
No 283
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=67.09 E-value=1.9 Score=32.48 Aligned_cols=24 Identities=8% Similarity=0.311 Sum_probs=17.2
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.++.+.+ +..+++++..+...+..
T Consensus 168 ~~~~Id~--~~~~e~~~~~i~~~l~~ 191 (197)
T 2z0h_A 168 RIVVLDG--KRSIEEIHRDVVREVKR 191 (197)
T ss_dssp TEEEEET--TSCHHHHHHHHHHHTTC
T ss_pred CEEEEeC--CCCHHHHHHHHHHHHHH
Confidence 4566664 35799999998887653
No 284
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=66.99 E-value=1.2 Score=34.20 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=11.5
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 10 GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 10 GAGKRTLVEKLSG 22 (214)
T ss_dssp EEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999875
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=66.90 E-value=1.9 Score=33.20 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy8274 198 QKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 198 ~~~v~~lf~~l~~~i~~ 214 (228)
|+++++.+.++...|..
T Consensus 168 Nddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 168 NDDLDKAYKELKDFIFA 184 (186)
T ss_dssp CSSHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 56899999999876653
No 286
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=66.87 E-value=38 Score=27.28 Aligned_cols=102 Identities=8% Similarity=0.040 Sum_probs=52.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEE-EEEeCCCCCCchHHHH-HHhhccCccccHHHHHHHHHHhCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPII-LVGTKLDLRDDKETIE-KLKEKKLAPITYPQGLSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~pii-lv~nK~Dl~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~ 187 (228)
|.+++|.+. +..++..+. .++..+... +.+.+++ +|.|+.+......... .........+.......-+...|.
T Consensus 181 D~viiv~~~-~~~s~~~~~-~~~~~l~~~~~~~~~~~~gvV~N~~~~~~~~~~~~~~~g~~v~~~Ip~~~~v~~a~~~g~ 258 (307)
T 3end_A 181 DQAVVVTAN-DFDSIYAMN-RIIAAVQAKSKNYKVRLAGCVANRSRATDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKK 258 (307)
T ss_dssp SEEEEEECS-SHHHHHHHH-HHHHHHHTTTTTCCCEEEEEEEESCSCCHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTC
T ss_pred CEEEEEecC-cHHHHHHHH-HHHHHHHHhhhcCCCceEEEEEecCCcHHHHHHHHHHcCCCceeeCCccHHHHHHHHcCC
Confidence 999999875 466677765 666666654 2356655 8899998532211111 111111222333334444444452
Q ss_pred ceEEEecccC-CCCHHHHHHHHHHHhcCCC
Q psy8274 188 VKYLECSALT-QKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 188 ~~~~evSa~~-~~~v~~lf~~l~~~i~~~~ 216 (228)
++++..... .......|..+...++...
T Consensus 259 -~v~~~~p~~~~s~~~~~~~~la~~l~~~~ 287 (307)
T 3end_A 259 -TLFEMDEDQDVLAARAEYIRLAESLWRGL 287 (307)
T ss_dssp -CTTTSCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred -CeEeeCCccccHHHHHHHHHHHHHHHhcC
Confidence 333332220 0235666666666666443
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=66.83 E-value=1.9 Score=32.31 Aligned_cols=13 Identities=46% Similarity=0.473 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 15 GsGKST~~~~L~~ 27 (193)
T 2rhm_A 15 ATGKTTLSQALAT 27 (193)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=66.78 E-value=1.9 Score=31.93 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=15.2
Q ss_pred EEEecccCCCCHHHHHHHHHHHhc
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.+.+... ..++++...+...+.
T Consensus 151 ~~~Id~~--~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 151 VLVVDID--QPLEGVVASTIEVIK 172 (175)
T ss_dssp EEEEECS--SCHHHHHHHHHHHHH
T ss_pred eEEEeCC--CCHHHHHHHHHHHHh
Confidence 4555542 478999988887664
No 289
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=66.77 E-value=1.8 Score=34.44 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 41 GsGKSTLl~~l~G 53 (237)
T 2cbz_A 41 GCGKSSLLSALLA 53 (237)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999876
No 290
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=66.63 E-value=1.8 Score=34.04 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 30 GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 30 GSGKTTYLNHFEKY 43 (230)
T ss_dssp TSCHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999998764
No 291
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=66.61 E-value=1.9 Score=34.18 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 35 GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 35 ASGKSTVCEKIME 47 (245)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 292
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=66.56 E-value=1.9 Score=33.93 Aligned_cols=13 Identities=46% Similarity=0.669 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 45 GsGKSTLlk~l~G 57 (214)
T 1sgw_A 45 GIGKTTLLKTIST 57 (214)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999876
No 293
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=66.44 E-value=1.9 Score=34.98 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 42 GsGKSTLlk~l~G 54 (262)
T 1b0u_A 42 GSGKSTFLRCINF 54 (262)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhc
Confidence 8999999999876
No 294
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=66.44 E-value=1.9 Score=34.13 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=15.9
Q ss_pred EEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
++.+.+.. -++++..+.+.+.+.
T Consensus 213 ~~~id~~~---~~~v~~~i~~~l~~~ 235 (246)
T 2bbw_A 213 LHQFSGTE---TNKIWPYVYTLFSNK 235 (246)
T ss_dssp EEEEECSC---HHHHHHHHHHHHHTT
T ss_pred EEEECCCC---cHHHHHHHHHHHHhh
Confidence 66676642 388888888877653
No 295
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=66.40 E-value=1.9 Score=34.81 Aligned_cols=14 Identities=29% Similarity=0.261 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 43 GsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 43 GSGKSTLINVITGF 56 (257)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999998763
No 296
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=66.06 E-value=1.7 Score=34.13 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=7.4
Q ss_pred CCChhhhHHhhh-hC
Q psy8274 1 AVGKTCLLISYT-TN 14 (228)
Q Consensus 1 gvGKTsli~~~~-~~ 14 (228)
|+|||||++.+. +.
T Consensus 37 GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 37 GCGKTTVANKLLEKQ 51 (231)
T ss_dssp C----CHHHHHHC--
T ss_pred CCCHHHHHHHHHhcC
Confidence 899999999998 53
No 297
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=66.05 E-value=1.9 Score=34.08 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 44 GsGKSTLl~~l~Gl 57 (229)
T 2pze_A 44 GAGKTSLLMMIMGE 57 (229)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999998763
No 298
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=66.01 E-value=2 Score=34.47 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 39 GsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 39 GAGKSTLGKILAGD 52 (250)
T ss_dssp TSSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999998874
No 299
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=65.96 E-value=8.7 Score=34.41 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=66.6
Q ss_pred cchhHHhhcchhhhhccccccccch-hHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC----------------C----
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLK-TVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV----------------N---- 122 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt----------------~---- 122 (228)
+.++|-+.. -+..|-+..|-+++ |.|.+..-+..+..| |++++|--+- |
T Consensus 287 Atk~ALkl~--dyvVTEAGFGaDlGaEKF~dIKcR~~gl~P--------~avVlVATvRALK~hGG~~~~~l~~en~~al 356 (557)
T 3pzx_A 287 ATKTALKLA--DYVVTEAGFGADLGAEKFYDVKCRYAGFKP--------DATVIVATVRALKMHGGVPKSDLATENLEAL 356 (557)
T ss_dssp HHHHHHHHC--SEEEEEBSSCTTTHHHHHHHTHHHHHTCCC--------CEEEEEECHHHHHHHTTCCGGGTTSCCHHHH
T ss_pred HHHHHHhcc--CeEEEecccCcCcchhhhcCCcccccCCCC--------CEEEEEeehHHHHhcCCCChhhcCccCHHHH
Confidence 344444443 22333344444443 445555555556668 9999997321 1
Q ss_pred hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHH
Q psy8274 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLK 202 (228)
Q Consensus 123 ~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~ 202 (228)
...+.++. +.++.++++ .+|++|+.|+..-..+.+ .+....+|++.|+ .+..+=++-|+|-.
T Consensus 357 ~~G~~NL~-kHien~~~f--GvpvVVaiN~F~tDT~aE--------------i~~v~~~~~~~G~-~~~~~wa~GG~G~~ 418 (557)
T 3pzx_A 357 REGFANLE-KHIENIGKF--GVPAVVAINAFPTDTEAE--------------LNLLYELCAKAGA-EVALSWAKGGEGGL 418 (557)
T ss_dssp HHHHHHHH-HHHHHHHTT--TCCEEEEEECCTTCCHHH--------------HHHHHHHCCSSEE-EEECHHHHGGGGGH
T ss_pred HHHHHHHH-HHHHHHHHc--CCCeEEEEeCCCCCCHHH--------------HHHHHHHHHHcCC-CEEEEecccchhHH
Confidence 12233343 444444444 899999999987665422 2234555555663 43333355667777
Q ss_pred HHHHHHHHHhc
Q psy8274 203 TVFDEAIRAVL 213 (228)
Q Consensus 203 ~lf~~l~~~i~ 213 (228)
++-+.+++.+-
T Consensus 419 ~LA~~Vv~~~~ 429 (557)
T 3pzx_A 419 ELARKVLQTLE 429 (557)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777664
No 300
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=65.47 E-value=2 Score=34.58 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=12.1
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 36 GsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 36 GAGKSTLLARMAGM 49 (249)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCcHHHHHHHHhCC
Confidence 89999999998763
No 301
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=65.46 E-value=2.1 Score=32.59 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=12.0
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 11 GsGKSTl~~~L~~ 23 (204)
T 2if2_A 11 GCGKSTVAQMFRE 23 (204)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 8999999999887
No 302
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=65.32 E-value=2 Score=34.22 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 42 GsGKSTLl~~l~G 54 (240)
T 1ji0_A 42 GAGKTTTLSAIAG 54 (240)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHhC
Confidence 8999999999876
No 303
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=65.22 E-value=2.1 Score=34.69 Aligned_cols=14 Identities=36% Similarity=0.268 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 51 GsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 51 GAGKTTTLRIISTL 64 (256)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcC
Confidence 89999999998763
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=65.20 E-value=2.1 Score=34.68 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 35 GsGKSTll~~l~g 47 (261)
T 2eyu_A 35 GSGKSTTIASMID 47 (261)
T ss_dssp TCSHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 8999999999886
No 305
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=65.19 E-value=2.1 Score=34.41 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 45 GsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 45 GSGKSTLTKLIQRF 58 (247)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcC
Confidence 89999999998763
No 306
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=65.14 E-value=2.1 Score=34.85 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 60 GsGKSTLlk~l~G 72 (263)
T 2olj_A 60 GSGKSTFLRCLNL 72 (263)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHHc
Confidence 8999999999876
No 307
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=65.09 E-value=2.1 Score=34.22 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 38 GsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 38 GGGKSTIFSLLERF 51 (243)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcC
Confidence 89999999998763
No 308
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=64.97 E-value=2.2 Score=34.71 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 56 GsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 56 GSGKSTLSATLAGR 69 (267)
T ss_dssp TSSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999998874
No 309
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=64.86 E-value=2.1 Score=35.07 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 44 GsGKSTLl~~l~G 56 (275)
T 3gfo_A 44 GVGKSTLFQNFNG 56 (275)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCCHHHHHHHHHc
Confidence 8999999998876
No 310
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=64.66 E-value=2.2 Score=31.34 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+.+.
T Consensus 46 G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 46 GAGKSHLLQAWVAQ 59 (149)
T ss_dssp TTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998863
No 311
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=64.62 E-value=8.9 Score=30.08 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=53.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhC-------CCCCEEEEEeCCCCCCc--------hHHHHHHhhccCccccHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHC-------PSTPIILVGTKLDLRDD--------KETIEKLKEKKLAPITYP 176 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-------~~~piilv~nK~Dl~~~--------~~~~~~~~~~~~~~v~~~ 176 (228)
|.+++|.+. +..++..+. .++..+.... +..++.+|.|+.|.... ....+.+.......+...
T Consensus 137 d~vi~v~~~-~~~s~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~ 214 (260)
T 3q9l_A 137 DEAIITTNP-EVSSVRDSD-RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPED 214 (260)
T ss_dssp SEEEEEECS-SHHHHHHHH-HHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEEEEEEECC
T ss_pred CEEEEEecC-ChhHHHHHH-HHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCceEEecCCC
Confidence 999999886 466777666 6666665432 12456788999884321 111111111111123333
Q ss_pred HHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 177 ~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
....-+...| .++++ .........|..+.+.++....
T Consensus 215 ~~~~~a~~~g-~~v~~---~~~s~~~~~~~~la~~l~~~~~ 251 (260)
T 3q9l_A 215 QSVLRASNQG-EPVIL---DINADAGKAYADTVERLLGEER 251 (260)
T ss_dssp HHHHHHHHHT-CCGGG---CTTCHHHHHHHHHHHHHTTCCC
T ss_pred hhHHHHHHcC-CCeEE---CCCCHHHHHHHHHHHHHhcCCC
Confidence 3333333344 23333 2344567788888888876443
No 312
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=64.32 E-value=2.1 Score=34.82 Aligned_cols=14 Identities=36% Similarity=0.356 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 47 GsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 47 GAGKSTLLRLLTGY 60 (266)
T ss_dssp TSCHHHHHHHHTSS
T ss_pred CCcHHHHHHHHhcC
Confidence 89999999998763
No 313
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=64.10 E-value=2.3 Score=32.46 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||.+.+..
T Consensus 35 GsGKSTl~~~La~ 47 (200)
T 3uie_A 35 GSGKSTLACALNQ 47 (200)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998875
No 314
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=63.75 E-value=2.3 Score=35.46 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 100 GsGKSTL~~~L~g 112 (312)
T 3aez_A 100 AVGKSTTARVLQA 112 (312)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CchHHHHHHHHHh
Confidence 8999999998875
No 315
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=63.70 E-value=2.4 Score=32.64 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 33 GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 33 GTGKTIFSLHFIAK 46 (235)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999843
No 316
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=63.69 E-value=2.3 Score=34.43 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 56 GsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 56 GSGKSTIAKLLYRF 69 (260)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcc
Confidence 89999999998763
No 317
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=63.65 E-value=2.4 Score=32.22 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=15.3
Q ss_pred eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.++.+.+. ..+++++..+...+
T Consensus 184 ~~~~Id~~--~~~e~v~~~I~~~l 205 (213)
T 2plr_A 184 NFIVIDGT--KTPKEIQIQIRKFV 205 (213)
T ss_dssp TCEEEETT--SCHHHHHHHHHHHH
T ss_pred CEEEEECC--CCHHHHHHHHHHHH
Confidence 35666653 47899888887765
No 318
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=63.61 E-value=2.3 Score=34.88 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 57 GsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 57 GAGKTTLLNILNAY 70 (279)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCcHHHHHHHHhCC
Confidence 89999999998763
No 319
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=63.47 E-value=2.3 Score=34.49 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 43 GsGKSTLl~~i~G 55 (266)
T 2yz2_A 43 GSGKSTLLQIVAG 55 (266)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhC
Confidence 8999999999876
No 320
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=63.36 E-value=2.4 Score=31.63 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 14 GsGKST~~~~La~ 26 (186)
T 3cm0_A 14 GAGKGTQASRLAQ 26 (186)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999874
No 321
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=63.33 E-value=2.3 Score=34.26 Aligned_cols=14 Identities=29% Similarity=0.197 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 41 GsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 41 GCGKSTLLDLLLGI 54 (253)
T ss_dssp SSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999998763
No 322
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=63.25 E-value=2.5 Score=32.30 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 35 GsGKsTl~~~La~ 47 (199)
T 3vaa_A 35 GAGKTTLGKAFAR 47 (199)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 323
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=63.06 E-value=2.5 Score=31.62 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=16.1
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.++.+.+ +..++++...+...+.
T Consensus 168 ~~~~Id~--~~~~~~~~~~i~~~l~ 190 (195)
T 2pbr_A 168 NVVVIDA--SGEEEEVFKEILRALS 190 (195)
T ss_dssp TEEEEET--TSCHHHHHHHHHHHHH
T ss_pred CEEEEEC--CCCHHHHHHHHHHHHH
Confidence 3566655 3478999988887664
No 324
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=62.99 E-value=2.5 Score=32.37 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=11.5
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+..
T Consensus 32 GsGKstl~~~l~~ 44 (201)
T 1rz3_A 32 RSGKTTLANQLSQ 44 (201)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998875
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=62.92 E-value=2.4 Score=34.55 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 55 GsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 55 GSGKSTVAALLQNL 68 (271)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhcC
Confidence 89999999998763
No 326
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=62.82 E-value=2.5 Score=32.24 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 12 GsGKST~~~~La~ 24 (206)
T 1jjv_A 12 GSGKTTIANLFTD 24 (206)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999976
No 327
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=62.55 E-value=2.6 Score=32.16 Aligned_cols=25 Identities=8% Similarity=0.287 Sum_probs=17.6
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.++.+.+. ..+++++..+...+...
T Consensus 176 ~~~~Id~~--~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 176 YWINIDAT--RKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp TEEEEECS--SCHHHHHHHHHHHHTTS
T ss_pred CEEEEECC--CCHHHHHHHHHHHHHHh
Confidence 35666543 57999999998877544
No 328
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=62.37 E-value=8.6 Score=30.52 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=31.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDL 155 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 155 (228)
|.+|++... +..++..+. .++..+.....+.++.+|.|+.+.
T Consensus 168 D~vivv~~~-~~~s~~~~~-~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 168 DYVIIPMTA-EKWAVESLD-LFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp SEEEEEEES-CTTHHHHHH-HHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CeEEEEeCC-ChHHHHHHH-HHHHHHHHHhccCCEEEEEecccC
Confidence 999999987 456777766 667777766556788899999953
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=62.21 E-value=2.7 Score=31.43 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=16.0
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.++.+.+. ..+++++..+...+.
T Consensus 171 ~~~~id~~--~~~~~v~~~i~~~l~ 193 (196)
T 1tev_A 171 KVKKIDAS--KSVDEVFDEVVQIFD 193 (196)
T ss_dssp CEEEEETT--SCHHHHHHHHHHHHH
T ss_pred CEEEEECC--CCHHHHHHHHHHHHH
Confidence 35566554 578999998887664
No 330
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=62.13 E-value=2.7 Score=31.56 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=11.5
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 23 GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 23 GSGKTTIATRLAD 35 (186)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 331
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=62.05 E-value=3.6 Score=30.18 Aligned_cols=36 Identities=50% Similarity=0.731 Sum_probs=29.4
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 100 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (228)
..+++..+...+.++||+++.|+++.|....+.++.
T Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 146 EELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 455666665688999999999999999999888764
No 332
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=62.04 E-value=2.7 Score=31.85 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+++.+...
T Consensus 14 GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 14 KSGKTTQCMNIMES 27 (204)
T ss_dssp TSSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998763
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=61.87 E-value=2.7 Score=32.13 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=16.0
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.++.+.+. ..+++++..+...+.
T Consensus 182 ~v~~Id~~--~~~eev~~~I~~~l~ 204 (207)
T 2qt1_A 182 EVVYLDGT--KSEEDLFLQVYEDLI 204 (207)
T ss_dssp CCEEEETT--SCHHHHHHHHHHHHT
T ss_pred eEEEecCC--CCHHHHHHHHHHHHH
Confidence 45556543 479999999887664
No 334
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=61.74 E-value=3.8 Score=30.56 Aligned_cols=38 Identities=76% Similarity=1.092 Sum_probs=30.5
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 101 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 101 (228)
+..+++..+...+.++|++++.|+++.|....+.++.|
T Consensus 157 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 157 GQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp HHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhcC
Confidence 44556666655889999999999999999998887753
No 335
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=61.41 E-value=2.8 Score=32.08 Aligned_cols=13 Identities=38% Similarity=0.378 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+..+..
T Consensus 30 GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 30 ASGKTTLALQTGL 42 (220)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999987
No 336
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=61.39 E-value=1.4 Score=33.44 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 12 GsGKSTL~~~L~~ 24 (171)
T 2f1r_A 12 DSGKTTLITRMMP 24 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6899999999886
No 337
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=61.36 E-value=2.8 Score=31.26 Aligned_cols=17 Identities=0% Similarity=-0.031 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy8274 199 KGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 199 ~~v~~lf~~l~~~i~~~ 215 (228)
.+++++.+.++..+...
T Consensus 159 ~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 159 LNPRQLATQILVDIKQT 175 (185)
T ss_dssp CCHHHHHHHHHHHSCC-
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 46899999998877543
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=61.33 E-value=2.8 Score=32.40 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 15 GsGKSTl~~~L~~ 27 (227)
T 1cke_A 15 GAGKGTLCKAMAE 27 (227)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 339
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=61.29 E-value=18 Score=27.67 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=31.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|.++++... +..++..+. ..+..+.... ..++.+|.|+.|...
T Consensus 92 D~viiv~~~-~~~~~~~~~-~~~~~l~~~~-~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 92 DLLVIPSTP-DALALDALM-LTIETLQKLG-NNRFRILLTIIPPYP 134 (209)
T ss_dssp SEEEEEECS-SHHHHHHHH-HHHHHHHHTC-SSSEEEEECSBCCTT
T ss_pred CEEEEEecC-CchhHHHHH-HHHHHHHhcc-CCCEEEEEEecCCcc
Confidence 999999886 456666665 6666666533 466889999999764
No 340
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=61.00 E-value=2.7 Score=34.11 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 40 GsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 40 GSGKTTLLRAISGL 53 (263)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999998763
No 341
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=60.57 E-value=2.4 Score=31.19 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=12.0
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 53 G~GKT~la~~~~~~ 66 (187)
T 2p65_A 53 GVGKTAIVEGLAIK 66 (187)
T ss_dssp GGCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999988753
No 342
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=60.44 E-value=2.9 Score=31.87 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 19 GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 19 RAGKSTQSRKLVE 31 (215)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 343
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=59.84 E-value=3 Score=34.47 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 90 GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 90 AVGKSTTARVLQA 102 (308)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998876
No 344
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=59.67 E-value=3.2 Score=30.94 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=11.5
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 15 GsGKST~~~~L~~ 27 (179)
T 2pez_A 15 GAGKTTVSMALEE 27 (179)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998875
No 345
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=59.35 E-value=3.2 Score=31.72 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++.+..
T Consensus 55 G~GKT~l~~~~~~ 67 (250)
T 1njg_A 55 GVGKTSIARLLAK 67 (250)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 346
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.33 E-value=3.2 Score=30.91 Aligned_cols=13 Identities=38% Similarity=0.399 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 21 GsGKst~~~~l~~ 33 (180)
T 3iij_A 21 GVGKTTLGKELAS 33 (180)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999874
No 347
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=59.24 E-value=3.2 Score=30.33 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 10 GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 10 CSGKSTVGSLLSR 22 (168)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999875
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=59.14 E-value=3.3 Score=31.18 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 22 GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 22 GSGKGTQCEKLVE 34 (199)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=59.00 E-value=3.3 Score=30.39 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 12 GsGKsT~a~~La~ 24 (173)
T 1e6c_A 12 GCGMTTVGRELAR 24 (173)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 350
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=58.96 E-value=3.2 Score=32.23 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=16.5
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.+..+.|. ..++++.+.+...+.
T Consensus 177 ~~~~IDa~--~~~e~V~~~i~~~i~ 199 (205)
T 4hlc_A 177 RFKSVNAD--QPLENVVEDTYQTII 199 (205)
T ss_dssp TEEEEETT--SCHHHHHHHHHHHHH
T ss_pred CEEEEECC--CCHHHHHHHHHHHHH
Confidence 47777764 468888888877664
No 351
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=58.92 E-value=2.6 Score=31.28 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy8274 199 KGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 199 ~~v~~lf~~l~~~i~~~ 215 (228)
..++++.+.+...+...
T Consensus 156 ~~~~~~~~~I~~~l~~~ 172 (183)
T 2vli_A 156 LGTQQVAEQIAAQVGLT 172 (183)
T ss_dssp CCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 47999999998887543
No 352
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=58.92 E-value=3.3 Score=31.05 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 19 GsGKsT~~~~La~ 31 (196)
T 2c95_A 19 GSGKGTQCEKIVQ 31 (196)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999874
No 353
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=58.77 E-value=3.3 Score=31.79 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=16.0
Q ss_pred EEEecccCCCCHHHHHHHHHHHhc
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++.+.+. ..+++++..+...+.
T Consensus 192 ~~~id~~--~~~~~v~~~i~~~l~ 213 (216)
T 3fb4_A 192 LKDIDGQ--QDIKKVFVDINDLLG 213 (216)
T ss_dssp EEEEECS--SCHHHHHHHHHHHHH
T ss_pred EEEEECC--CCHHHHHHHHHHHHH
Confidence 5666643 468999999887764
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.73 E-value=3.3 Score=30.80 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 16 GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 16 GSGKGTQCANIVR 28 (194)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 355
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=58.68 E-value=3.1 Score=34.28 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 74 GsGKSTLlk~l~G 86 (290)
T 2bbs_A 74 GAGKTSLLMMIMG 86 (290)
T ss_dssp TSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHhc
Confidence 8999999999876
No 356
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=58.67 E-value=3.2 Score=33.98 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+..
T Consensus 43 GsGKSTla~~L~~ 55 (287)
T 1gvn_B 43 GSGKTSLRSAIFE 55 (287)
T ss_dssp TSCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999975
No 357
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=58.61 E-value=3.2 Score=34.38 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+.+
T Consensus 110 GsGKTTll~~Lag 122 (302)
T 3b9q_A 110 GGGKTTSLGKLAH 122 (302)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 358
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=58.26 E-value=3.3 Score=33.98 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 41 G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 41 RVGKSSLLRAFLNE 54 (350)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 79999999999864
No 359
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=58.26 E-value=3.4 Score=30.75 Aligned_cols=13 Identities=15% Similarity=0.015 Sum_probs=11.3
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+..+..
T Consensus 36 GsGKStll~ai~~ 48 (182)
T 3kta_A 36 GSGKSNIGDAILF 48 (182)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998864
No 360
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=58.14 E-value=3.4 Score=32.19 Aligned_cols=24 Identities=8% Similarity=-0.014 Sum_probs=18.4
Q ss_pred EEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
++.+.+. .+++++..+...+...-
T Consensus 193 ~~~id~~---~~~~v~~~i~~~l~~~~ 216 (227)
T 1zd8_A 193 LETFSGT---ETNKIWPYVYAFLQTKV 216 (227)
T ss_dssp EEEEECS---SHHHHHHHHHHHHTTTS
T ss_pred EEEEeCC---CHHHHHHHHHHHHHhhc
Confidence 6777764 78999999998876543
No 361
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=58.04 E-value=3.4 Score=32.10 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=13.2
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||+|+..++...
T Consensus 34 GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 34 RTGKTQICHTLAVTC 48 (243)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHH
Confidence 799999999999753
No 362
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=57.85 E-value=3.5 Score=30.54 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 14 GsGKsTla~~La~ 26 (175)
T 1via_A 14 GSGKSTLARALAK 26 (175)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 363
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=57.48 E-value=3.5 Score=34.61 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=11.3
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+..
T Consensus 102 GSGKSTl~~~L~~ 114 (321)
T 3tqc_A 102 AVGKSTTSRVLKA 114 (321)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988864
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=57.40 E-value=3.5 Score=33.93 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=11.2
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+..
T Consensus 41 GsGKSTla~~L~~ 53 (290)
T 1odf_A 41 GSGKSFTSIQIYN 53 (290)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988764
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=57.38 E-value=3.5 Score=34.21 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=35.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
+.++++.|.+........ +..+.+.. .. .+++.||.|.... ...+......++ .|..
T Consensus 222 ~~~lLvLDa~t~~~~~~~----~~~~~~~~-~~-t~iivTh~d~~a~----------------gg~~l~i~~~~~-~pi~ 278 (304)
T 1rj9_A 222 KEVWLVLDAVTGQNGLEQ----AKKFHEAV-GL-TGVIVTKLDGTAK----------------GGVLIPIVRTLK-VPIK 278 (304)
T ss_dssp SEEEEEEETTBCTHHHHH----HHHHHHHH-CC-SEEEEECTTSSCC----------------CTTHHHHHHHHC-CCEE
T ss_pred CeEEEEEcHHHHHHHHHH----HHHHHHHc-CC-cEEEEECCccccc----------------ccHHHHHHHHHC-CCeE
Confidence 778889998765443322 22232221 23 3566799986542 122445566677 4666
Q ss_pred EecccCCCCHH
Q psy8274 192 ECSALTQKGLK 202 (228)
Q Consensus 192 evSa~~~~~v~ 202 (228)
.++ +|++++
T Consensus 279 ~ig--~Ge~~~ 287 (304)
T 1rj9_A 279 FVG--VGEGPD 287 (304)
T ss_dssp EEE--CSSSTT
T ss_pred EEe--CCCChh
Confidence 664 444443
No 366
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=57.26 E-value=3.6 Score=34.50 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+-
T Consensus 181 GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 181 GSGKTTYIKSIMEF 194 (330)
T ss_dssp TSCHHHHHHHGGGG
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999998864
No 367
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=57.24 E-value=3.6 Score=33.50 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 45 G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 45 GMGKSTFVRQQALQ 58 (296)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998864
No 368
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=57.18 E-value=3.5 Score=35.02 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+-
T Consensus 185 GsGKSTll~~l~~~ 198 (361)
T 2gza_A 185 GSGKTTLMKALMQE 198 (361)
T ss_dssp SSCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999999863
No 369
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=57.15 E-value=3.7 Score=31.21 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=15.6
Q ss_pred eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.++.+.+ +..++++...+...+
T Consensus 178 ~~~~Id~--~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 178 QLKTVDA--VGTMDEVFARALRAL 199 (201)
T ss_dssp TEEEEEC--CSCHHHHHHHHHHHT
T ss_pred cEEEEeC--CCCHHHHHHHHHHHH
Confidence 4666665 346899998888765
No 370
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=57.13 E-value=3.6 Score=31.21 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 25 GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 25 GAGKGTQCEKLVK 37 (203)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 371
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=56.94 E-value=3.7 Score=31.63 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++.+..
T Consensus 62 G~GKT~la~~l~~ 74 (242)
T 3bos_A 62 KSGRTHLIHAACA 74 (242)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 372
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=56.86 E-value=3.6 Score=34.27 Aligned_cols=13 Identities=31% Similarity=0.286 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 136 GsGKSTLl~lL~g 148 (305)
T 2v9p_A 136 NTGKSMLCNSLIH 148 (305)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHhh
Confidence 8999999999885
No 373
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=56.85 E-value=3.7 Score=31.53 Aligned_cols=22 Identities=5% Similarity=0.157 Sum_probs=15.9
Q ss_pred EEEecccCCCCHHHHHHHHHHHhc
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++.+.+. ..+++++..+...+.
T Consensus 192 ~~~id~~--~~~~~v~~~i~~~l~ 213 (216)
T 3dl0_A 192 LVNVNGQ--QDIQDVYADLKVLLG 213 (216)
T ss_dssp EEEEECS--SCHHHHHHHHHHHHG
T ss_pred EEEEECC--CCHHHHHHHHHHHHH
Confidence 5666654 468999999887664
No 374
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=56.67 E-value=16 Score=32.15 Aligned_cols=18 Identities=44% Similarity=0.549 Sum_probs=14.3
Q ss_pred cCeEEeeeeeeCCCCccc
Q psy8274 35 DGKPINLGLWDTAGQEDY 52 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~ 52 (228)
+|..+.+.+.||.|....
T Consensus 136 ~g~~~~vlllDTEG~~d~ 153 (457)
T 4ido_A 136 DGKKVAVLLMDTQGTFDS 153 (457)
T ss_dssp TSCEEEEEEEEECCBTCT
T ss_pred CCCeeEEEEEeccCCCCc
Confidence 567788999999997544
No 375
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=56.64 E-value=3.6 Score=34.98 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+++
T Consensus 133 GSGKTTlL~~l~g 145 (356)
T 3jvv_A 133 GSGKSTTLAAMLD 145 (356)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999875
No 376
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=56.57 E-value=3.7 Score=33.75 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 40 G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 40 RTGKSSIIKIGINE 53 (357)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999999863
No 377
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=56.48 E-value=37 Score=26.08 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=32.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~ 157 (228)
|.++++... +..++..+. .+++.+..... ...+-+|.|+.|...
T Consensus 142 d~viiv~~~-~~~~~~~~~-~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 142 DELCIVTTP-SLQSLRRAG-QLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp SEEEEEECS-SHHHHHHHH-HHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred CEEEEEecC-cHHHHHHHH-HHHHHHHHhCCCccceEEEEecCCCCC
Confidence 999999886 467777776 77777776543 345778899998654
No 378
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=56.36 E-value=3.8 Score=30.84 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=12.1
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 48 G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 48 GTGKTATAIALARD 61 (226)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988753
No 379
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=56.05 E-value=3.9 Score=30.71 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+.+.+...
T Consensus 20 GsGKSTv~~~La~~ 33 (184)
T 1y63_A 20 GTGKTSMAEMIAAE 33 (184)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999998764
No 380
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=56.02 E-value=4 Score=29.96 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=11.5
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 17 GsGKSTva~~La~ 29 (168)
T 1zuh_A 17 GSGKSSLAQELGL 29 (168)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 381
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.81 E-value=3.9 Score=32.72 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||.+.+..
T Consensus 11 GSGKSTla~~La~ 23 (253)
T 2ze6_A 11 CSGKTDMAIQIAQ 23 (253)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHh
Confidence 8999999999875
No 382
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=55.43 E-value=4 Score=32.27 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+.+.
T Consensus 59 G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 59 GVGKTHLARAVAGE 72 (254)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998863
No 383
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=55.41 E-value=4.1 Score=31.50 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=16.3
Q ss_pred EEEecccCCCCHHHHHHHHHHHhc
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++.+.+. ..+++++..+...+.
T Consensus 197 ~~~id~~--~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 197 WAGVDAS--QPPATVWADILNKLG 218 (220)
T ss_dssp EEEEETT--SCHHHHHHHHHHHHT
T ss_pred EEEEECC--CCHHHHHHHHHHHHh
Confidence 6677653 479999999988664
No 384
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=55.30 E-value=5.5 Score=35.61 Aligned_cols=14 Identities=36% Similarity=0.221 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+++-
T Consensus 270 GSGKTTlL~aL~~~ 283 (511)
T 2oap_1 270 ASGKTTTLNAIMMF 283 (511)
T ss_dssp TSSHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999998764
No 385
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=55.15 E-value=4.1 Score=32.05 Aligned_cols=14 Identities=36% Similarity=0.460 Sum_probs=12.0
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+++.+...
T Consensus 12 g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 12 AVGKSTFVKLLTKT 25 (241)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988753
No 386
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=55.06 E-value=3.4 Score=34.98 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+-
T Consensus 180 GsGKSTLlk~L~gl 193 (365)
T 1lw7_A 180 SSGKSVLVNKLAAV 193 (365)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998874
No 387
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=55.00 E-value=25 Score=30.06 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=36.4
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..|++++.||+|.... ++...+. ....++++|+..+.|++.+...+.+.+
T Consensus 249 ~~p~i~v~nKid~~~~-----------------eele~l~---~~~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 249 YMPAIYVLNKIDSLSI-----------------EELELLY---RIPNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EECEEEEEECGGGSCH-----------------HHHHHHT---TSTTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccceEEEEecccccCH-----------------HHHHHHh---cccchhhhhhhhcccchhHHHHHHHHc
Confidence 4799999999997653 2222222 223588999999999999988887765
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=54.82 E-value=4.2 Score=31.29 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=16.7
Q ss_pred eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.++.+.+. ..+++++..+...+
T Consensus 192 ~~~~ida~--~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 192 KYAKVDGT--KPVAEVRADLEKIL 213 (214)
T ss_dssp EEEEEETT--SCHHHHHHHHHHHH
T ss_pred eEEEEECC--CCHHHHHHHHHHHh
Confidence 57778774 36899999988765
No 389
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=54.76 E-value=4.2 Score=30.78 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=12.0
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|+..+...
T Consensus 64 GtGKT~la~~i~~~ 77 (202)
T 2w58_A 64 GVGKTYLLAAIANE 77 (202)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999988753
No 390
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=54.61 E-value=3.6 Score=32.88 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=16.7
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+++.+.+.. .+++++..+...+.
T Consensus 235 ~~~~Id~~~--~~eev~~~I~~~l~ 257 (263)
T 1p5z_B 235 PILTLDVNE--DFKDKYESLVEKVK 257 (263)
T ss_dssp CEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CEEEEECCC--CHHHHHHHHHHHHH
Confidence 467776653 78999888887663
No 391
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=54.53 E-value=4.3 Score=30.60 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+.+.+...
T Consensus 18 GsGKST~~~~La~~ 31 (203)
T 1uf9_A 18 GSGKSTVAALLRSW 31 (203)
T ss_dssp TSCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHC
Confidence 89999999998874
No 392
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=54.49 E-value=4.2 Score=34.64 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 51 GsGKSTLLr~iaGl 64 (355)
T 1z47_A 51 GSGKTTILRLIAGL 64 (355)
T ss_dssp TSSHHHHHHHHHTS
T ss_pred CCcHHHHHHHHhCC
Confidence 89999999998763
No 393
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=54.42 E-value=4.3 Score=31.40 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=17.0
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.++.+.+ +..+++++..+...+.
T Consensus 187 ~~~~Id~--~~~~~ev~~~I~~~l~ 209 (222)
T 1zak_A 187 IIVKVQG--DATVDAVFAKIDELLG 209 (222)
T ss_dssp CEEEEEC--SSCHHHHHHHHHHHHH
T ss_pred cEEEEEC--CCCHHHHHHHHHHHHH
Confidence 4677776 3578999998887663
No 394
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=54.24 E-value=4.2 Score=34.73 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=12.0
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 146 GsGKTTll~~l~~ 158 (372)
T 2ewv_A 146 GSGKSTTIASMID 158 (372)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999886
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=54.17 E-value=4.4 Score=31.16 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHhcC
Q psy8274 200 GLKTVFDEAIRAVLC 214 (228)
Q Consensus 200 ~v~~lf~~l~~~i~~ 214 (228)
.++++...+...+..
T Consensus 188 s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 188 PVQDAVKQIIDYLDT 202 (211)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 689999998887753
No 396
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=54.01 E-value=4.5 Score=30.13 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 12 GsGKsT~a~~La~ 24 (184)
T 2iyv_A 12 GSGKSTIGRRLAK 24 (184)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999998875
No 397
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=53.99 E-value=4.4 Score=31.16 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=21.5
Q ss_pred HHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 181 ~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+++... ..+..+.|. ..++++...+...+.+
T Consensus 161 la~~~~-~~~~~IDa~--~~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 161 LAREHP-ERIVVLDGK--RSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHCT-TTEEEEETT--SCHHHHHHHHHHHHSC
T ss_pred HHHhCC-CCEEEEcCC--CCHHHHHHHHHHHHHH
Confidence 344444 357777764 4799999999988864
No 398
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=53.85 E-value=4.3 Score=32.49 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=17.8
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+.+.+.....++++...+...+..+
T Consensus 148 ~~~~Id~~~~~~~~ei~~~I~~~l~~~ 174 (260)
T 3a4m_A 148 PFLIIDTTKDIDFNEIAKKLIEKSKEI 174 (260)
T ss_dssp CSEEEETTSCCCHHHHHHHHHHHHTSC
T ss_pred CEEEEeCCCCCCHHHHHHHHHhcccCC
Confidence 355665544346888888888876543
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=53.85 E-value=4.2 Score=31.33 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 14 GSGKST~~~~L~~ 26 (218)
T 1vht_A 14 GSGKSTVANAFAD 26 (218)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 400
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=53.77 E-value=4.4 Score=34.60 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 40 GsGKSTLLr~iaGl 53 (359)
T 3fvq_A 40 GCGKTTLLRCLAGF 53 (359)
T ss_dssp TSSHHHHHHHHHTS
T ss_pred CchHHHHHHHHhcC
Confidence 89999999998773
No 401
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=53.48 E-value=4.4 Score=31.54 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=17.0
Q ss_pred eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.++.+.+ ...+++++..+...+
T Consensus 201 ~~~~ida--~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 201 VYIELDG--EGSIDSIKDTLLAQL 222 (223)
T ss_dssp EEEEEET--TSCHHHHHHHHHHHH
T ss_pred eEEEEEC--CCCHHHHHHHHHHHh
Confidence 5778877 357999999988765
No 402
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=53.16 E-value=4.5 Score=34.62 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 64 GaGKSTLlr~i~G 76 (366)
T 3tui_C 64 GAGKSTLIRCVNL 76 (366)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CchHHHHHHHHhc
Confidence 8999999998876
No 403
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=53.10 E-value=4.5 Score=34.18 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=11.3
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 17 GaGKTT~~~~La~ 29 (334)
T 1p6x_A 17 GIGKSTTGRVMAS 29 (334)
T ss_dssp TSSHHHHHHHHHS
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988764
No 404
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=53.06 E-value=4.6 Score=34.50 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 39 GsGKSTLLr~iaGl 52 (362)
T 2it1_A 39 GSGKSTLLYTIAGI 52 (362)
T ss_dssp TSSHHHHHHHHHTS
T ss_pred CchHHHHHHHHhcC
Confidence 89999999998763
No 405
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=53.03 E-value=4.5 Score=33.69 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+.+.
T Consensus 61 G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 61 GLGKTTLAHIIASE 74 (334)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 89999999998853
No 406
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=52.95 E-value=4.6 Score=34.44 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 39 GsGKSTLLr~iaG 51 (359)
T 2yyz_A 39 GCGKTTTLLMLAG 51 (359)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CchHHHHHHHHHC
Confidence 8999999999876
No 407
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=52.60 E-value=4.7 Score=34.54 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 39 GsGKSTLLr~iaG 51 (372)
T 1g29_1 39 GCGKTTTLRMIAG 51 (372)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CcHHHHHHHHHHc
Confidence 8999999999876
No 408
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=52.38 E-value=6.1 Score=29.46 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=29.6
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 99 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 99 (228)
+..+++..+++.+.++||+++.|+++.|....+.++
T Consensus 144 ~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 144 ARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp HHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 456677777788999999999999999998877654
No 409
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=52.31 E-value=4.7 Score=33.48 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++.+..
T Consensus 55 G~GKTtl~~~l~~ 67 (386)
T 2qby_A 55 GTGKTAVVKFVLS 67 (386)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999886
No 410
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=52.14 E-value=4.8 Score=32.09 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=11.3
Q ss_pred CCChhhhHHhhh
Q psy8274 1 AVGKTCLLISYT 12 (228)
Q Consensus 1 gvGKTsli~~~~ 12 (228)
|+|||||++.+.
T Consensus 37 GsGKSTl~k~La 48 (252)
T 4e22_A 37 GAGKGTLCKALA 48 (252)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999999988
No 411
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=52.13 E-value=4.8 Score=32.65 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+.+.
T Consensus 54 GtGKTtLakala~~ 67 (274)
T 2x8a_A 54 GCGKTLLAKAVANE 67 (274)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 89999999998763
No 412
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=52.12 E-value=4.7 Score=35.10 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+++-
T Consensus 177 GSGKTTlL~allg~ 190 (418)
T 1p9r_A 177 GSGKSTTLYAGLQE 190 (418)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999998863
No 413
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=52.05 E-value=4.8 Score=34.33 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+.+
T Consensus 167 GsGKTTll~~Lag 179 (359)
T 2og2_A 167 GGGKTTSLGKLAH 179 (359)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHh
Confidence 8999999998875
No 414
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=51.89 E-value=4.9 Score=34.45 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 47 GsGKSTLLr~iaG 59 (372)
T 1v43_A 47 GCGKTTTLRMIAG 59 (372)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CChHHHHHHHHHc
Confidence 8999999999876
No 415
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=51.81 E-value=4.9 Score=34.02 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=13.2
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++.+.+..
T Consensus 81 GaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 81 GVGKSTLLGMICNGA 95 (347)
T ss_dssp TSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhcCC
Confidence 899999999998763
No 416
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=51.75 E-value=5 Score=32.37 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+..+..
T Consensus 40 GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 40 GAGKSMLALQLAA 52 (279)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999885
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=51.55 E-value=5 Score=31.59 Aligned_cols=23 Identities=13% Similarity=0.472 Sum_probs=16.7
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.++.+.+ +..+++++.++...+.
T Consensus 201 ~~~vIDa--~~s~eev~~~I~~~l~ 223 (229)
T 4eaq_A 201 RFKSVNA--DQPLENVVEDTYQTII 223 (229)
T ss_dssp TEEEEET--TSCHHHHHHHHHHHHH
T ss_pred CEEEEeC--CCCHHHHHHHHHHHHH
Confidence 4677766 3478999998887664
No 418
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=51.52 E-value=5 Score=31.16 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|+.+++.+
T Consensus 33 GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 33 GTGKTIFSQQFLWN 46 (247)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999888743
No 419
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=51.37 E-value=4.8 Score=33.96 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=11.2
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 14 GsGKTT~~~~La~ 26 (331)
T 1e2k_A 14 GMGKTTTTQLLVA 26 (331)
T ss_dssp TSSHHHHHHHHTC
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988754
No 420
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=51.28 E-value=5 Score=35.90 Aligned_cols=67 Identities=12% Similarity=-0.017 Sum_probs=36.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
+-++||.|.+....- + .....+.... ... .+|.||.|-... ...+..+...++ .++.
T Consensus 413 ~evLLvLDattGq~a--l--~~ak~f~~~~-~it-gvIlTKLD~tak----------------gG~~lsi~~~~~-~PI~ 469 (503)
T 2yhs_A 413 HEVMLTIDASTGQNA--V--SQAKLFHEAV-GLT-GITLTKLDGTAK----------------GGVIFSVADQFG-IPIR 469 (503)
T ss_dssp SEEEEEEEGGGTHHH--H--HHHHHHHHHT-CCS-EEEEECGGGCSC----------------CTHHHHHHHHHC-CCEE
T ss_pred CeeEEEecCcccHHH--H--HHHHHHHhhc-CCC-EEEEEcCCCccc----------------ccHHHHHHHHHC-CCEE
Confidence 788999998754221 1 1122333221 233 456799995432 234566777777 4666
Q ss_pred EecccCCCCHHH
Q psy8274 192 ECSALTQKGLKT 203 (228)
Q Consensus 192 evSa~~~~~v~~ 203 (228)
.+ -+|.++++
T Consensus 470 fi--g~Ge~vdD 479 (503)
T 2yhs_A 470 YI--GVGERIED 479 (503)
T ss_dssp EE--ECSSSGGG
T ss_pred EE--ecCCChhh
Confidence 65 45555544
No 421
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=51.09 E-value=5.1 Score=34.48 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 39 GsGKSTLLr~iaG 51 (381)
T 3rlf_A 39 GCGKSTLLRMIAG 51 (381)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CchHHHHHHHHHc
Confidence 8999999999876
No 422
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=50.57 E-value=5.4 Score=31.62 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=14.9
Q ss_pred EEEecccCCCCHHHHHHHHHHHh
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i 212 (228)
++.+.+. ..+++++..+...+
T Consensus 221 ~~~id~~--~~~~~v~~~i~~~l 241 (243)
T 3tlx_A 221 LINLDAT--QPANDLEKKISQHI 241 (243)
T ss_dssp EEEEETT--SCHHHHHHHHHHHH
T ss_pred EEEEECC--CCHHHHHHHHHHHH
Confidence 5666543 36899999888765
No 423
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=50.45 E-value=5.5 Score=29.08 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=10.6
Q ss_pred CCChhhhHHhhh
Q psy8274 1 AVGKTCLLISYT 12 (228)
Q Consensus 1 gvGKTsli~~~~ 12 (228)
|+|||+|+..+.
T Consensus 33 GsGKStil~Ai~ 44 (149)
T 1f2t_A 33 GSGKSSLLDAIL 44 (149)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 799999998875
No 424
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=49.96 E-value=5.5 Score=32.04 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+.+.
T Consensus 83 GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 83 GVGKTHLARAVAGE 96 (278)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHH
Confidence 89999999998863
No 425
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=49.66 E-value=5.7 Score=30.67 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=15.4
Q ss_pred eEEEecccCCCCHHHHHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.++.+.+. ..+++++..+...
T Consensus 196 ~~~~id~~--~~~~~v~~~i~~~ 216 (217)
T 3be4_A 196 ILKRVNAK--LPPKEVTEQIKKI 216 (217)
T ss_dssp CEEEEETT--SCHHHHHHHHHHH
T ss_pred CEEEEECC--CCHHHHHHHHHhh
Confidence 46777763 4789999988764
No 426
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=49.56 E-value=5.6 Score=32.77 Aligned_cols=60 Identities=10% Similarity=0.003 Sum_probs=32.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
+.+++|.|.+.. ...+. .+...+... + ..-+|.||.|.... ...+...+...+ .|+.
T Consensus 214 ~~~~lVl~at~~--~~~~~-~~~~~~~~l--~-~~giVltk~D~~~~----------------~g~~~~~~~~~~-~pi~ 270 (296)
T 2px0_A 214 IQSFLVLSATAK--YEDMK-HIVKRFSSV--P-VNQYIFTKIDETTS----------------LGSVFNILAESK-IGVG 270 (296)
T ss_dssp EEEEEEEETTBC--HHHHH-HHTTTTSSS--C-CCEEEEECTTTCSC----------------CHHHHHHHHTCS-CCCS
T ss_pred CeEEEEEECCCC--HHHHH-HHHHHHhcC--C-CCEEEEeCCCcccc----------------hhHHHHHHHHHC-cCEE
Confidence 788899987643 23333 332222211 1 23456699997643 124556666777 4655
Q ss_pred Eec
Q psy8274 192 ECS 194 (228)
Q Consensus 192 evS 194 (228)
.++
T Consensus 271 ~i~ 273 (296)
T 2px0_A 271 FMT 273 (296)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
No 427
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=49.51 E-value=9.4 Score=28.36 Aligned_cols=40 Identities=28% Similarity=0.683 Sum_probs=31.9
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 103 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 103 (228)
+..+++..+...+.++||+++.|+++.|....+.++...+
T Consensus 152 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 152 GDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCC
Confidence 4556666666668899999999999999999888876544
No 428
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=49.43 E-value=7 Score=31.64 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=13.0
Q ss_pred CCC-CCEEEEEeCCCCCC
Q psy8274 141 CPS-TPIILVGTKLDLRD 157 (228)
Q Consensus 141 ~~~-~piilv~nK~Dl~~ 157 (228)
++. .++.+|.|+.|...
T Consensus 175 ~~~~~~~~vV~N~~~~~~ 192 (286)
T 2xj4_A 175 QRQAMDWVVLRNRLATTE 192 (286)
T ss_dssp SSCCCEEEEEEECCTTCC
T ss_pred CCccccEEEEEeeecCCC
Confidence 445 67789999998765
No 429
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=49.37 E-value=15 Score=29.11 Aligned_cols=40 Identities=13% Similarity=-0.006 Sum_probs=27.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEE-EEEeCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDL 155 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pii-lv~nK~Dl 155 (228)
|.+|+|...+ ..+...+. ..++.++.. +.|++ +|.|+.|.
T Consensus 154 D~viiv~~~~-~~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 154 TGVVVVSTPQ-ELTAVIVE-KAINMAEET--NTSVLGLVENMSYF 194 (262)
T ss_dssp SEEEEEECSS-SCCHHHHH-HHHHHHHTT--TCCEEEEEETTCCE
T ss_pred CeEEEEecCc-cchHHHHH-HHHHHHHhC--CCCEEEEEECCCcc
Confidence 9899998765 44566665 555566554 56776 88999884
No 430
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=49.32 E-value=3.7 Score=34.19 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=11.5
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 90 GsGKSTLl~ll~g 102 (306)
T 3nh6_A 90 GAGKSTILRLLFR 102 (306)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHc
Confidence 7999999988876
No 431
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=49.28 E-value=4.7 Score=32.08 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=12.0
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+.+.+...
T Consensus 42 GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 42 GAGKTTIHRIKQKE 55 (253)
T ss_dssp GGTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999998753
No 432
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=48.84 E-value=6 Score=29.87 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=11.5
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 12 GsGKst~~~~la~ 24 (208)
T 3ake_A 12 ASGKSSVARRVAA 24 (208)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998865
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=48.79 E-value=6 Score=30.94 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=16.7
Q ss_pred EEEecccCCCCHHHHHHHHHHHhc
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++.+.+. ..+++++..+...+.
T Consensus 208 ~~~id~~--~~~~~v~~~I~~~l~ 229 (233)
T 1ak2_A 208 HSAIDAS--QTPDVVFASILAAFS 229 (233)
T ss_dssp EEEEETT--SCHHHHHHHHHHHHH
T ss_pred EEEEECC--CCHHHHHHHHHHHHH
Confidence 6777774 478999999887663
No 434
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=48.70 E-value=5.9 Score=31.31 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++.+.+
T Consensus 55 GtGKT~la~~la~ 67 (257)
T 1lv7_A 55 GTGKTLLAKAIAG 67 (257)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=48.61 E-value=6.1 Score=30.30 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+.+.|...
T Consensus 22 GSGKSTva~~L~~~ 35 (192)
T 2grj_A 22 GTGKSTVCEILKNK 35 (192)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 79999999998764
No 436
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=48.57 E-value=29 Score=27.24 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=28.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhh----hCCCCCEE-EEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRH----HCPSTPII-LVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~----~~~~~pii-lv~nK~Dl~~ 157 (228)
|.+|++...+ ..++..+. .++..+.. .+.+.+++ +|.|+.|...
T Consensus 135 D~viiv~~~~-~~s~~~~~-~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 135 EGVVVPVQAE-YYALEGVA-GLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp SEEEEEEESS-THHHHHHH-HHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred CeEEEEecCc-hHHHHHHH-HHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 9999999864 45555544 34444432 23466764 8899998654
No 437
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=48.33 E-value=7.6 Score=28.29 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=28.0
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 99 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 99 (228)
++.++....++.+.++||+++.|+++.|...++.++
T Consensus 133 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 133 ARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHH
Confidence 344556666778899999999999999988877654
No 438
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=48.22 E-value=4.8 Score=33.01 Aligned_cols=13 Identities=8% Similarity=0.319 Sum_probs=8.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.|..
T Consensus 15 GSGKSTva~~L~~ 27 (290)
T 1a7j_A 15 GAGTSTVKHTFDQ 27 (290)
T ss_dssp ---CCTHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999999875
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=47.98 E-value=6.1 Score=32.03 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+++..
T Consensus 12 GsGKST~a~~L~~ 24 (301)
T 1ltq_A 12 GSGKSTWAREFIA 24 (301)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999886
No 440
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=47.90 E-value=6 Score=33.98 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=11.3
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 59 GsGKTT~~~~Lae 71 (376)
T 1of1_A 59 GMGKTTTTQLLVA 71 (376)
T ss_dssp TSSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH
Confidence 8999999988764
No 441
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=47.89 E-value=32 Score=26.40 Aligned_cols=41 Identities=12% Similarity=-0.057 Sum_probs=28.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDL 155 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 155 (228)
|.+++|.+. +..++..+. .+...+.... -..+.+|.|+.+-
T Consensus 155 D~viiv~~~-~~~s~~~~~-~~~~~~~~~~-~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 155 DMMIAVIEP-NLNSIKTGL-NIEKLAGDLG-IKKVRYVINKVRN 195 (254)
T ss_dssp SEEEEEECS-SHHHHHHHH-HHHHHHHHHT-CSCEEEEEEEECC
T ss_pred CEEEEecCC-CHHHHHHHH-HHHHHHHHcC-CccEEEEEeCCCC
Confidence 999999886 466677665 5555554442 2456788999983
No 442
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=47.62 E-value=6.2 Score=32.93 Aligned_cols=14 Identities=29% Similarity=0.159 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 54 G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 54 GTGKTVTLRKLWEL 67 (389)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998864
No 443
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=47.43 E-value=11 Score=34.16 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 391 GsGKSTll~~l~g 403 (598)
T 3qf4_B 391 GSGKTTIVNLLMR 403 (598)
T ss_dssp TSSTTHHHHHHTT
T ss_pred CCcHHHHHHHHhc
Confidence 8999999998876
No 444
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=47.38 E-value=6.3 Score=33.97 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 57 GsGKSTLLr~iaG 69 (390)
T 3gd7_A 57 GSGKSTLLSAFLR 69 (390)
T ss_dssp TSSHHHHHHHHHT
T ss_pred CChHHHHHHHHhC
Confidence 7999999998876
No 445
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=47.30 E-value=6.2 Score=34.76 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=12.1
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 148 GsGKSTLlr~L~Gl 161 (460)
T 2npi_A 148 QTGKTSLSRTLCSY 161 (460)
T ss_dssp TSSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhCc
Confidence 79999999988763
No 446
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=47.25 E-value=4.3 Score=34.46 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 36 GsGKSTLLr~iaG 48 (348)
T 3d31_A 36 GAGKTLFLELIAG 48 (348)
T ss_dssp THHHHHHHHHHHT
T ss_pred CccHHHHHHHHHc
Confidence 7999999999876
No 447
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=47.09 E-value=6.4 Score=31.50 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 61 GtGKT~la~~la~~ 74 (285)
T 3h4m_A 61 GTGKTLLAKAVATE 74 (285)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 89999999998764
No 448
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=47.03 E-value=6.4 Score=32.35 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++.+..
T Consensus 47 GtGKT~la~~i~~ 59 (324)
T 1l8q_A 47 GTGKTHLLQAAGN 59 (324)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8999999999876
No 449
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=47.03 E-value=6.6 Score=31.13 Aligned_cols=13 Identities=23% Similarity=0.301 Sum_probs=11.5
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.|..
T Consensus 32 GSGKST~a~~L~~ 44 (252)
T 1uj2_A 32 ASGKSSVCAKIVQ 44 (252)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998875
No 450
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=46.89 E-value=6.4 Score=33.20 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++.+..
T Consensus 62 G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 62 GIGKTTLAKFTVK 74 (412)
T ss_dssp SSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 451
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=46.67 E-value=9.8 Score=34.37 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=11.4
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 377 GsGKSTll~~l~g 389 (578)
T 4a82_A 377 GGGKSTLINLIPR 389 (578)
T ss_dssp TSSHHHHHTTTTT
T ss_pred CChHHHHHHHHhc
Confidence 8999999988765
No 452
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=46.42 E-value=10 Score=27.67 Aligned_cols=36 Identities=94% Similarity=1.411 Sum_probs=28.5
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 101 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 101 (228)
.+++..+...+.++||+++.|+++.|....+.++.+
T Consensus 146 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 146 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred HHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 345555545788999999999999999998888654
No 453
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.40 E-value=6.4 Score=32.59 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+++.+.+.
T Consensus 46 G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 46 GTGKKTRCMALLES 59 (354)
T ss_dssp TSSHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998773
No 454
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=45.51 E-value=7 Score=32.95 Aligned_cols=14 Identities=29% Similarity=0.238 Sum_probs=12.7
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+...
T Consensus 141 GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 141 GSGKTQLAHTLAVM 154 (349)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999875
No 455
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=45.24 E-value=7.1 Score=32.43 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 54 G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 54 GTGKTAVARLVLRR 67 (387)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998753
No 456
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=45.08 E-value=7.4 Score=30.86 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++.+..
T Consensus 54 GtGKT~la~~la~ 66 (268)
T 2r62_A 54 GTGKTLLAKAVAG 66 (268)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 8999999999875
No 457
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=44.63 E-value=7.5 Score=30.51 Aligned_cols=13 Identities=38% Similarity=0.388 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++.+..
T Consensus 49 GtGKT~la~~la~ 61 (262)
T 2qz4_A 49 GCGKTLLAKAVAT 61 (262)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 458
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=44.30 E-value=7.4 Score=34.02 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=13.0
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++.+.+..
T Consensus 167 GsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 167 GVGKSVLLGMMARYT 181 (438)
T ss_dssp TSSHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhccc
Confidence 899999999988753
No 459
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=44.20 E-value=7.2 Score=31.69 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.|..
T Consensus 85 GSGKSTva~~La~ 97 (281)
T 2f6r_A 85 GSGKSSVAQRLKN 97 (281)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999874
No 460
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=44.17 E-value=7.6 Score=32.86 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=10.7
Q ss_pred CCChhhhH-Hhhhh
Q psy8274 1 AVGKTCLL-ISYTT 13 (228)
Q Consensus 1 gvGKTsli-~~~~~ 13 (228)
|+||||++ +.+..
T Consensus 22 GaGKTT~~~~~L~~ 35 (341)
T 1osn_A 22 GIGKTTAAEEFLHH 35 (341)
T ss_dssp SSCTTHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999 76654
No 461
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=44.15 E-value=7.5 Score=31.34 Aligned_cols=14 Identities=36% Similarity=0.323 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 64 GtGKT~la~~la~~ 77 (297)
T 3b9p_A 64 GNGKTLLARAVATE 77 (297)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998863
No 462
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=43.89 E-value=7.6 Score=32.94 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=10.9
Q ss_pred CCChhhhHHhhh
Q psy8274 1 AVGKTCLLISYT 12 (228)
Q Consensus 1 gvGKTsli~~~~ 12 (228)
|+|||||++.+.
T Consensus 33 GaGKTTll~ai~ 44 (365)
T 3qf7_A 33 GAGKSSLFEAIS 44 (365)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999999876
No 463
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=43.74 E-value=85 Score=24.42 Aligned_cols=43 Identities=5% Similarity=-0.025 Sum_probs=28.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCE-EEEEeCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPI-ILVGTKLDLR 156 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~pi-ilv~nK~Dl~ 156 (228)
|.++++... +..++..+. .++..+..... +.++ -+|.|+.+..
T Consensus 142 D~viiv~~~-~~~s~~~~~-~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 142 QEIYIVASG-EMMALYAAN-NISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp CEEEEEECS-SHHHHHHHH-HHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred CEEEEeecC-chhhHHHHH-HHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 999999875 456666665 55566655432 4554 5788998754
No 464
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=43.59 E-value=8.1 Score=30.13 Aligned_cols=23 Identities=22% Similarity=0.024 Sum_probs=17.0
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.++.+.+. ..+++++..+...+.
T Consensus 183 ~~~vIDa~--~s~eeV~~~I~~~l~ 205 (213)
T 4edh_A 183 RYQVLDAG--LPLAEVQAGLDRLLP 205 (213)
T ss_dssp TEEEEETT--SCHHHHHHHHHHHHH
T ss_pred cEEEEeCC--CCHHHHHHHHHHHHH
Confidence 57778765 478999888877653
No 465
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=43.10 E-value=4.2 Score=34.56 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 41 GsGKSTLLr~iaG 53 (353)
T 1oxx_K 41 GAGKTTFMRIIAG 53 (353)
T ss_dssp HHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHhC
Confidence 6899999999876
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=42.97 E-value=8.2 Score=32.01 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=37.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
+.+++|.|.+.. .+.+. . ...+... .++ .-+|.||.|.... ...+..+....+ .|+.
T Consensus 224 ~~vllVlda~t~--~~~l~-~-a~~~~~~-~~i-~gvVlTk~D~~~~----------------gG~~l~~~~~~~-~Pi~ 280 (306)
T 1vma_A 224 HETLLVIDATTG--QNGLV-Q-AKIFKEA-VNV-TGIILTKLDGTAK----------------GGITLAIARELG-IPIK 280 (306)
T ss_dssp SEEEEEEEGGGH--HHHHH-H-HHHHHHH-SCC-CEEEEECGGGCSC----------------TTHHHHHHHHHC-CCEE
T ss_pred cEEEEEEECCCC--HHHHH-H-HHHHHhc-CCC-CEEEEeCCCCccc----------------hHHHHHHHHHHC-CCEE
Confidence 889999998733 22221 1 1223222 122 2355699996542 234677777888 4777
Q ss_pred EecccCCCCHHH
Q psy8274 192 ECSALTQKGLKT 203 (228)
Q Consensus 192 evSa~~~~~v~~ 203 (228)
.++. |+.+++
T Consensus 281 ~i~~--Ge~~~d 290 (306)
T 1vma_A 281 FIGV--GEKAED 290 (306)
T ss_dssp EEEC--SSSGGG
T ss_pred EEeC--CCChhh
Confidence 7643 444444
No 467
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=42.94 E-value=8.2 Score=30.97 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=11.6
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+.+.+..
T Consensus 58 GsGKSTl~~~La~ 70 (250)
T 3nwj_A 58 GSGKTTVGKIMAR 70 (250)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 468
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=42.90 E-value=23 Score=29.70 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhCCceEEEecccC---------CCCHHHHHHHHHHHhcC
Q psy8274 175 YPQGLSMAKEIGAVKYLECSALT---------QKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~evSa~~---------~~~v~~lf~~l~~~i~~ 214 (228)
.......++..+ .|.|++++.. ..+..+.|..+...++.
T Consensus 300 ~~s~~~~aq~~~-~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~ 347 (361)
T 3pg5_A 300 MHSMPATAQDVH-APIMELSSSDRVRGAQINQRNAYAEKINSVAANVYK 347 (361)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHC-CCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777 5899998755 44788888888888763
No 469
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=42.76 E-value=8.4 Score=29.15 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=11.6
Q ss_pred CCCEEEEEeCCCCCC
Q psy8274 143 STPIILVGTKLDLRD 157 (228)
Q Consensus 143 ~~piilv~nK~Dl~~ 157 (228)
+.++++.|...|-..
T Consensus 103 ~~~Vi~~Gl~~~f~~ 117 (184)
T 2orw_A 103 GIDVFCAGLDLTHKQ 117 (184)
T ss_dssp TCEEEEEEESBCTTS
T ss_pred CCCEEEEeecccccc
Confidence 788999998877443
No 470
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=42.20 E-value=9.6 Score=28.07 Aligned_cols=36 Identities=44% Similarity=0.803 Sum_probs=29.1
Q ss_pred cchhHHhhcchhhhhcccc-ccccchhHHHHHHHHhh
Q psy8274 64 GLSMAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVL 99 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 99 (228)
+..+++..+++.+.++||+ ++.|+++.|....+.++
T Consensus 146 ~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 146 GANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 4456666666789999998 68999999999888765
No 471
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=42.06 E-value=8.6 Score=29.78 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.4
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|+.+++.
T Consensus 40 G~GKT~l~l~~~~ 52 (251)
T 2zts_A 40 GTGKTTFAAQFIY 52 (251)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999998864
No 472
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=41.98 E-value=8.5 Score=32.07 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 55 G~GKT~la~~l~~~ 68 (384)
T 2qby_B 55 GTGKTFVSKYIFNE 68 (384)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998763
No 473
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=41.85 E-value=7.5 Score=30.77 Aligned_cols=23 Identities=0% Similarity=0.094 Sum_probs=17.4
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+++.+.+. ..+++++..+...+.
T Consensus 203 ~~~vIDa~--~s~eeV~~~I~~~l~ 225 (227)
T 3v9p_A 203 RFVIVDSS--EPIAQIRKQLEGVLA 225 (227)
T ss_dssp TEEEEETT--SCHHHHHHHHHHHHH
T ss_pred CEEEEeCC--CCHHHHHHHHHHHHH
Confidence 57778765 479999999887653
No 474
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.41 E-value=8.8 Score=31.81 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+++.+...
T Consensus 56 G~GKTtla~~la~~ 69 (340)
T 1sxj_C 56 GTGKTSTIVALARE 69 (340)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998864
No 475
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=41.40 E-value=8.9 Score=30.82 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++.+..
T Consensus 60 GtGKT~la~~la~ 72 (310)
T 1ofh_A 60 GVGKTEIARRLAK 72 (310)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 476
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=41.30 E-value=8.8 Score=34.48 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 57 GaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 57 GTGKSTAVKILAGQ 70 (538)
T ss_dssp TSSHHHHHHHHHTS
T ss_pred CCCHHHHHHHHhCC
Confidence 89999999998864
No 477
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=41.13 E-value=9 Score=31.23 Aligned_cols=14 Identities=14% Similarity=-0.024 Sum_probs=12.1
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 46 GtGKT~la~aiA~~ 59 (293)
T 3t15_A 46 GQGKSFQCELVFRK 59 (293)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998753
No 478
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=41.11 E-value=9.1 Score=30.49 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 74 GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 74 HSGKTALAAKIAEE 87 (272)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 89999999998763
No 479
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=40.96 E-value=9.4 Score=30.14 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=11.4
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++.+..
T Consensus 31 g~GKst~~~~l~~ 43 (223)
T 3ld9_A 31 GSGKTTQSHLLAE 43 (223)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988874
No 480
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=40.89 E-value=9.3 Score=29.35 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=10.4
Q ss_pred CCChhhhHHhhh
Q psy8274 1 AVGKTCLLISYT 12 (228)
Q Consensus 1 gvGKTsli~~~~ 12 (228)
|+|||||+..+.
T Consensus 33 gsGKStil~ai~ 44 (203)
T 3qks_A 33 GSGKSSLLDAIL 44 (203)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 799999998765
No 481
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=40.70 E-value=8.8 Score=27.48 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||++++.+...
T Consensus 37 GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 37 GSPFETVARYFHKN 50 (143)
T ss_dssp TCCHHHHHGGGCCT
T ss_pred CccHHHHHHHHHHh
Confidence 89999999887653
No 482
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.69 E-value=9.2 Score=31.43 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||++++.+...
T Consensus 68 G~GKT~la~~la~~ 81 (353)
T 1sxj_D 68 GTGKTSTILALTKE 81 (353)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998764
No 483
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=40.63 E-value=9.3 Score=30.87 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=10.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|++.+..
T Consensus 77 GtGKT~la~~la~ 89 (309)
T 3syl_A 77 GTGKTTVALKMAG 89 (309)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999986654
No 484
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=40.54 E-value=9.2 Score=34.20 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||+|+..+..
T Consensus 157 GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 157 GCGKSVLAAEAVR 169 (591)
T ss_dssp TSSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHh
Confidence 8999999999875
No 485
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=40.32 E-value=9.4 Score=32.69 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=11.7
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+.+
T Consensus 179 GsGKSTl~~~l~~ 191 (377)
T 1svm_A 179 DSGKTTLAAALLE 191 (377)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 8999999998875
No 486
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=40.18 E-value=9 Score=34.45 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 35 GaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 35 GVGKTTVLKILAGE 48 (538)
T ss_dssp TSSHHHHHHHHTTS
T ss_pred CCcHHHHHHHHhcC
Confidence 89999999998864
No 487
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=40.07 E-value=9.8 Score=29.69 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=17.0
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++..+.+. ..+++++..+...+.
T Consensus 183 ~~~vIDa~--~s~eeV~~~I~~~l~ 205 (213)
T 4tmk_A 183 SIHTIDAT--QPLEAVMDAIRTTVT 205 (213)
T ss_dssp TEEEEETT--SCHHHHHHHHHHHHH
T ss_pred cEEEECCC--CCHHHHHHHHHHHHH
Confidence 57778763 478999888877654
No 488
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=39.81 E-value=9.4 Score=28.86 Aligned_cols=35 Identities=94% Similarity=1.332 Sum_probs=27.0
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 98 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 98 (228)
+..+++..+...+.++||+++.|+++.|....+.+
T Consensus 169 ~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 169 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 34456666666789999999999999998877653
No 489
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=39.65 E-value=8.8 Score=28.82 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=29.0
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRC 111 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 111 (228)
+..+++..+ +.+.++|++++.|+++.|....+.+....+.......|
T Consensus 152 ~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~~~~~~~c 198 (201)
T 3oes_A 152 GKKLAESWG-ATFMESSARENQLTQGIFTKVIQEIARVENSYGQERRC 198 (201)
T ss_dssp HHHHHHHHT-CEEEECCTTCHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHHHhhhhhhcccccc
Confidence 344555554 47888999999999999999998887766655444444
No 490
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=39.46 E-value=11 Score=27.08 Aligned_cols=15 Identities=7% Similarity=-0.088 Sum_probs=12.6
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||++++.+....
T Consensus 34 GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 34 GTGRMTGARYLHQFG 48 (145)
T ss_dssp TSSHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHhC
Confidence 899999999887643
No 491
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=39.40 E-value=6.6 Score=31.10 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++.+..-
T Consensus 37 GsGKSTll~~i~g~ 50 (227)
T 1qhl_A 37 GAGKSTTMAAFVTA 50 (227)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcc
Confidence 79999999988753
No 492
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=39.25 E-value=9.9 Score=33.77 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=11.4
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++-+.+
T Consensus 39 GsGKSTLl~~l~G 51 (483)
T 3euj_A 39 GAGKSTTMAGFVT 51 (483)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHhc
Confidence 8999999998874
No 493
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=39.07 E-value=10 Score=30.96 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||+|++.+...
T Consensus 59 GtGKT~la~ala~~ 72 (301)
T 3cf0_A 59 GCGKTLLAKAIANE 72 (301)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 89999999998864
No 494
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=39.02 E-value=10 Score=32.78 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+||||+++++..
T Consensus 268 GSGKSTla~~L~~ 280 (416)
T 3zvl_A 268 GAGKSTFIQEHLV 280 (416)
T ss_dssp TSSHHHHHHHHTG
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999875
No 495
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=39.01 E-value=10 Score=29.67 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=16.7
Q ss_pred ceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 188 VKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.++..+.+- +..++++...+...+.
T Consensus 177 ~~~~vID~a-~~s~eeV~~~I~~~i~ 201 (216)
T 3tmk_A 177 ESITIVDVT-NKGIQEVEALIWQIVE 201 (216)
T ss_dssp CSEEEEECT-TCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CCCHHHHHHHHHHHHH
Confidence 367788732 3478888888776553
No 496
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=38.69 E-value=10 Score=34.70 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++-+.+-
T Consensus 113 GaGKSTLLkiL~Gl 126 (608)
T 3j16_B 113 GIGKSTALKILAGK 126 (608)
T ss_dssp TSSHHHHHHHHHTS
T ss_pred CChHHHHHHHHhcC
Confidence 89999999998863
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=38.61 E-value=12 Score=28.62 Aligned_cols=39 Identities=36% Similarity=0.503 Sum_probs=30.9
Q ss_pred cchhHHhhcchhhhhcccccccc-chhHHHHHHHHhhCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVLCPV 102 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~ 102 (228)
+..+++..+...+.++||+++.| +++.|....+.++...
T Consensus 166 ~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 166 GCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp HHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 45667777666899999999998 9999999988877543
No 498
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=38.40 E-value=11 Score=30.03 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=16.2
Q ss_pred EEEecccCCCCHHHHHHHHHHHhc
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++.+.+. ..+++++..+...+.
T Consensus 206 ~~vIDa~--~sieeV~~~I~~~l~ 227 (236)
T 3lv8_A 206 VVMIDAA--QSIEQVTADIRRALQ 227 (236)
T ss_dssp EEEEETT--SCHHHHHHHHHHHHH
T ss_pred EEEEeCC--CCHHHHHHHHHHHHH
Confidence 7777764 478999888877654
No 499
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=38.29 E-value=1.5e+02 Score=23.69 Aligned_cols=104 Identities=15% Similarity=0.107 Sum_probs=59.6
Q ss_pred CCCCCCC-CCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----C-CCCEEEEEeCCCCCCchHHHHHHhhccCcccc
Q psy8274 101 PVPTVPK-KKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----P-STPIILVGTKLDLRDDKETIEKLKEKKLAPIT 174 (228)
Q Consensus 101 ~~~~~~~-~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 174 (228)
..|..|- .+.+-++.+.+++. +...+.+.+.....+.++. + .-|-++|..-. .+..-......-+...++
T Consensus 44 LnP~iP~KTrgN~a~~l~~~v~-~~~~~~l~~~a~~~v~~~s~~~~~~t~PGi~v~~~~---~~~~L~~f~~~A~~~vvt 119 (252)
T 3u02_A 44 LNPNVPYKTRGNGAVAMSFKID-EEKIKEVKTLVIRYVRELADIDHENTNPGIVFLIGE---VPKELEEFSLRALREHVT 119 (252)
T ss_dssp SCTTC-----CCEEEEEEEECC-GGGHHHHHHHHHHHHHHHHTCC-----CCEEEEESS---BCHHHHHHHHHHHHSCCC
T ss_pred eCCCCCccCCCCcEEEEEEEcC-CCCHHHHHHHHHHHHHHHhcccCCCCCCEEEEEeCC---CCHHHHHHHHHHHHcccC
Confidence 5565553 44667777888773 3344444433344444442 1 35777776543 222222233333457899
Q ss_pred HHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 175 ~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+++.+++++.|+ .++ --.+|.|+--.+-.+...
T Consensus 120 ~~~A~~~a~~~gi-~~~--~~~~grGiIGALAAiG~~ 153 (252)
T 3u02_A 120 IEEAEHVARKVNA-EVY--KFKLGRGIIGGLAAIGYP 153 (252)
T ss_dssp HHHHHHHHHHTTC-EEE--TCCSSTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCc-EEE--ecCCCCeeeehhhhccCC
Confidence 9999999999994 554 337888888877777653
No 500
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=38.06 E-value=11 Score=30.98 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=10.9
Q ss_pred CCChhhhHHhhh
Q psy8274 1 AVGKTCLLISYT 12 (228)
Q Consensus 1 gvGKTsli~~~~ 12 (228)
|+||||++..+.
T Consensus 108 G~GKTT~~~~la 119 (297)
T 1j8m_F 108 GTGKTTTAGKLA 119 (297)
T ss_dssp CSSTTHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 899999998887
Done!