RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8274
(228 letters)
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 303 bits (779), Expect = e-106
Identities = 84/223 (37%), Positives = 108/223 (48%), Gaps = 53/223 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL+ + AFP Y PTVF+ Y N+ V GKP++L +WDTAGQ+DYDRLRPL Y
Sbjct: 44 GCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFY 103
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P V +CF +
Sbjct: 104 PDA------------------------------------------------SVLLLCFDV 115
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P SF+N+ +WYPEV H C PII+VG K DLR DK + KL+ L P+TY +G
Sbjct: 116 TSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE 175
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 223
MA+ +GAV YLECSA + VF EA L + +
Sbjct: 176 MARSVGAVAYLECSARLHDNVHAVFQEAAEVAL-----SSRGR 213
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 303 bits (779), Expect = e-106
Identities = 102/224 (45%), Positives = 125/224 (55%), Gaps = 52/224 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG+ +NLGLWDTAGQEDY RLRPLSY
Sbjct: 19 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSY 78
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
D+F + FSL
Sbjct: 79 RGA------------------------------------------------DIFVLAFSL 90
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
++ AS+ENV KW PE+R P+ PI+LVGTKLDLRDDK + IT QG
Sbjct: 91 ISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYL----ADHTNVITSTQGEE 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
+ K+IGA Y+ECS+ TQ+ +K VFD AI+ VL P +R
Sbjct: 147 LRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRR 190
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 302 bits (776), Expect = e-106
Identities = 157/213 (73%), Positives = 163/213 (76%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 99
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 100 PQT------------------------------------------------DVFLICFSL 111
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 112 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 301 bits (773), Expect = e-105
Identities = 94/213 (44%), Positives = 118/213 (55%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 95 PDT------------------------------------------------DVILMCFSI 106
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR D+ T +L + K P+ +G
Sbjct: 107 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA I A YLECSA T++G++ VF+ A RA L
Sbjct: 167 MANRISAFGYLECSAKTKEGVREVFEMATRAGL 199
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 300 bits (769), Expect = e-104
Identities = 92/215 (42%), Positives = 115/215 (53%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 35 ACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 95 PDT------------------------------------------------DVILMCFSV 106
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILV K DLR D+ +L K P+ G +
Sbjct: 107 DSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
MA I A YLECSA T++G++ VF+ A RA L
Sbjct: 167 MAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 298 bits (766), Expect = e-104
Identities = 95/224 (42%), Positives = 125/224 (55%), Gaps = 52/224 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKT L++SYTTN +P EYIPT FDN+SA V VDG+P+ L L DTAGQ+++D+LRPL Y
Sbjct: 30 AVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCY 89
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
T D+F +CFS+
Sbjct: 90 TNT------------------------------------------------DIFLLCFSV 101
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+P+SF+NV KW PE+R HCP PIILVGT+ DLR+D + + +L + K P+
Sbjct: 102 VSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL 161
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
+A+EI A Y+ECSALTQK LK VFD AI A + ++
Sbjct: 162 LAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY----SDTQQ 201
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 298 bits (764), Expect = e-104
Identities = 68/223 (30%), Positives = 105/223 (47%), Gaps = 61/223 (27%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL++++ P Y+PTVF+N+S + + L LWDTAGQE+YDRLRPLSY
Sbjct: 33 AVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 92
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ DV +CF++
Sbjct: 93 ADS------------------------------------------------DVVLLCFAV 104
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
N SF+N+ KW PE++H+ + +LVG K+DLR D +T +G
Sbjct: 105 NNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD----------DVTKQEGDD 154
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 223
+ +++G V Y+E S++ + GL VF++++ + P K
Sbjct: 155 LCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN---KPVPK 194
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 297 bits (762), Expect = e-103
Identities = 72/214 (33%), Positives = 106/214 (49%), Gaps = 49/214 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RPLSY
Sbjct: 38 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 97
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P + D ICF +
Sbjct: 98 PDS------------------------------------------------DAVLICFDI 109
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
P + ++V KW E++ CP+T ++LVG K DLR D T+ +L + P++Y QG +
Sbjct: 110 SRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169
Query: 181 MAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVL 213
MAK+IGA Y+ECSAL ++ ++ +F A A +
Sbjct: 170 MAKQIGAATYIECSALQSENSVRDIFHVATLACV 203
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 296 bits (760), Expect = e-103
Identities = 103/215 (47%), Positives = 127/215 (59%), Gaps = 50/215 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G +NLGLWDTAGQEDY+RLRPLSY
Sbjct: 18 AVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSY 77
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
DVF + FSL
Sbjct: 78 RGA------------------------------------------------DVFILAFSL 89
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
++ AS+ENV KW PE++H+ P PI+LVGTKLDLRDDK+ + PIT QG
Sbjct: 90 ISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFF--IDHPGAVPITTVQGEE 147
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+ K IGA Y+ECS+ +Q+ +K VFD AIR VL P
Sbjct: 148 LKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 288 bits (738), Expect = e-100
Identities = 72/214 (33%), Positives = 106/214 (49%), Gaps = 49/214 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RPLSY
Sbjct: 17 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P + D ICF +
Sbjct: 77 PDS------------------------------------------------DAVLICFDI 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
P + ++V KW E++ CP+T ++LVG K DLR D T+ +L + P++Y QG +
Sbjct: 89 SRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148
Query: 181 MAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVL 213
MAK+IGA Y+ECSAL ++ ++ +F A A +
Sbjct: 149 MAKQIGAATYIECSALQSENSVRDIFHVATLACV 182
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 285 bits (731), Expect = 3e-99
Identities = 109/215 (50%), Positives = 135/215 (62%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL+SY +AFP EY+PTVFD+Y+ +V V GK LGL+DTAGQEDYDRLRPLSY
Sbjct: 28 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DVF ICFS+
Sbjct: 88 PMT------------------------------------------------DVFLICFSV 99
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
VNPASF+NV+ +W PE++ + P+ P +L+GT++DLRDD +T+ +L + K PI QG
Sbjct: 100 VNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+AKEIGA Y+ECSALTQKGLKTVFDEAI A+L P
Sbjct: 160 LAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 284 bits (728), Expect = 8e-99
Identities = 160/224 (71%), Positives = 167/224 (74%), Gaps = 52/224 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DV ICFSL
Sbjct: 75 PQT------------------------------------------------DVSLICFSL 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 87 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P K+
Sbjct: 147 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP----PPVKK 186
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 280 bits (718), Expect = 8e-97
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 50/227 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT +L + +P Y+PTVF+NY+A + + + + L LWDT+G YD +RPL Y
Sbjct: 37 QCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCY 96
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ D +CF +
Sbjct: 97 SDS------------------------------------------------DAVLLCFDI 108
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
P + ++ KW E+ +CPST ++L+G K DLR D T+ +L +K API+Y QG +
Sbjct: 109 SRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168
Query: 181 MAKEIGAVKYLECSALT-QKGLKTVFDEAIRAVLCPVPTVPKKKRCV 226
+AK++GA YLE SA T +K + ++F A L P+ +K V
Sbjct: 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK-PSPLPQKSPV 214
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 284 bits (727), Expect = 1e-96
Identities = 155/214 (72%), Positives = 162/214 (75%), Gaps = 48/214 (22%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAG EDYDRLRPLSYP
Sbjct: 166 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
QT DVF ICFSLV
Sbjct: 226 QT------------------------------------------------DVFLICFSLV 237
Query: 122 NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSM 181
+PASF +VRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+M
Sbjct: 238 SPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 297
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
AKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP
Sbjct: 298 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 121 bits (307), Expect = 7e-35
Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 64/230 (27%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L + F Y PTV + YS V + +L L DTAGQ++Y L
Sbjct: 34 CVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + +S+
Sbjct: 94 ------------------------------------------------IGVHGYVLVYSV 105
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SF+ + Y ++ H P++LVG K DL ++E + +G
Sbjct: 106 TSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPERE------------VQAVEG 152
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+A+ G ++E SA + + +F + I+ + + +++RC L+
Sbjct: 153 KKLAESWG-ATFMESSARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 114 bits (287), Expect = 4e-32
Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + T F +Y PT+ D Y + VD P L + DTAG E + +R L
Sbjct: 13 GVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYI 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
K F + +SL
Sbjct: 73 ------------------------------------------------KNGQGFILVYSL 84
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
VN SF++++ ++ P+ILVG K+DL ++E ++ +G
Sbjct: 85 VNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLESERE------------VSSSEG 131
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A+E G ++E SA ++ + +F E +R +
Sbjct: 132 RALAEEWG-CPFMETSAKSKTMVDELFAEIVRQM 164
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 113 bits (286), Expect = 5e-32
Identities = 40/215 (18%), Positives = 70/215 (32%), Gaps = 65/215 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F YIPTV D Y + D L + DT G + ++ LS
Sbjct: 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSI 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ F + +S+
Sbjct: 73 ------------------------------------------------SKGHAFILVYSI 84
Query: 121 VNPASFENVRAKWYPEVRHH---CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ S E ++ Y ++ S PI+LVG K D +E + +
Sbjct: 85 TSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPSRE------------VQSSE 131
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A+ ++E SA +K +F E +
Sbjct: 132 AEALARTWK-CAFMETSAKLNHNVKELFQELLNLE 165
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 112 bits (283), Expect = 2e-31
Identities = 42/214 (19%), Positives = 76/214 (35%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
+VGK+ L I + F Y PT+ + ++ + V+G+ +L L DTAGQ++Y
Sbjct: 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + + +S+
Sbjct: 76 ------------------------------------------------IDINGYILVYSV 87
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SFE ++ + ++ PI+LVG K DL ++ I+Y +G
Sbjct: 88 TSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHMERV------------ISYEEG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A+ +LE SA + VF I
Sbjct: 135 KALAESWN-AAFLESSAKENQTAVDVFRRIILEA 167
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 113 bits (284), Expect = 3e-31
Identities = 48/245 (19%), Positives = 87/245 (35%), Gaps = 79/245 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +
Sbjct: 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 83
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F FS+
Sbjct: 84 ------------------------------------------------RSGEGFLCVFSI 95
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
SF + ++ + P +LVG K DL D ++ ++ +
Sbjct: 96 TEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQ------------VSVEEA 142
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC---------------PVPTVPKKK 223
+ A++ V Y+E SA T+ + VF + +R + ++
Sbjct: 143 KNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRE 201
Query: 224 RCVLL 228
RC +L
Sbjct: 202 RCCIL 206
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 111 bits (279), Expect = 6e-31
Identities = 45/214 (21%), Positives = 80/214 (37%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 73
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F FS+
Sbjct: 74 ------------------------------------------------RSGEGFLCVFSI 85
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
SF + ++ + P +LVG K DL D ++ ++ +
Sbjct: 86 TEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQ------------VSVEEA 132
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A + V Y+E SA T+ + VF + +R +
Sbjct: 133 KNRADQWN-VNYVETSAKTRANVDKVFFDLMREI 165
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 111 bits (280), Expect = 6e-31
Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +
Sbjct: 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 87
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F FS+
Sbjct: 88 ------------------------------------------------RSGEGFLCVFSI 99
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
SF + ++ + P +LVG K DL D ++ ++ +
Sbjct: 100 TEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQ------------VSVEEA 146
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A++ V Y+E SA T+ + VF + +R +
Sbjct: 147 KNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 179
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 111 bits (279), Expect = 6e-31
Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 63/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + F +Y PT+ D+Y V VD + L + DTAG E + +R L
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYM 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
K F + +S+
Sbjct: 73 ------------------------------------------------KNGQGFALVYSI 84
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
++F +++ ++ P+ILVG K DL D++ + QG
Sbjct: 85 TAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDERV------------VGKEQG 131
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A++ +LE SA ++ + +F + +R +
Sbjct: 132 QNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 111 bits (279), Expect = 8e-31
Identities = 45/214 (21%), Positives = 76/214 (35%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + + F +Y PT+ D+Y+ VDG P L + DTAGQE++ +R
Sbjct: 19 GVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYM 78
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ F + F++
Sbjct: 79 ------------------------------------------------RAGHGFLLVFAI 90
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SF V K + ++ P++LVG K DL ++ + +
Sbjct: 91 NDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQRQ------------VPRSEA 137
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ V Y E SA + + F++ +RAV
Sbjct: 138 SAFGASHH-VAYFEASAKLRLNVDEAFEQLVRAV 170
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 111 bits (279), Expect = 1e-30
Identities = 44/215 (20%), Positives = 71/215 (33%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ L ++ + P D Y +MVD + + L ++D Q D
Sbjct: 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDH 92
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
QTG D F I FS
Sbjct: 93 CLQTG-----------------------------------------------DAFLIVFS 105
Query: 120 LVNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ + SF V + +R P+ILVG K DL +E ++ +
Sbjct: 106 VTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSRE------------VSLEE 152
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
G +A + K++E SA + +F+ A+R +
Sbjct: 153 GRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQI 186
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 111 bits (279), Expect = 1e-30
Identities = 43/245 (17%), Positives = 76/245 (31%), Gaps = 80/245 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F YIPT+ D Y + D L + DT G + ++ LS
Sbjct: 18 GVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSI 77
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ F + FS+
Sbjct: 78 ------------------------------------------------SKGHAFILVFSV 89
Query: 121 VNPASFENVRAKWY---PEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ S E + Y +++ P++LVG K D +E + +
Sbjct: 90 TSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDE-TQRE------------VDTRE 135
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL--------------CPVPTVPKKK 223
++A+E ++E SA +K +F E + T K
Sbjct: 136 AQAVAQEWK-CAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKG 194
Query: 224 RCVLL 228
+C L+
Sbjct: 195 KCTLM 199
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 109 bits (276), Expect = 2e-30
Identities = 43/215 (20%), Positives = 70/215 (32%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ L ++ + D Y +MVD + + L ++D Q D
Sbjct: 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH 71
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
QTG D F I FS
Sbjct: 72 CLQTG-----------------------------------------------DAFLIVFS 84
Query: 120 LVNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ + SF V + +R P+ILVG K DL +E ++ +
Sbjct: 85 VTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSRE------------VSLEE 131
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
G +A + K++E SA + +F+ A+R +
Sbjct: 132 GRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQI 165
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 108 bits (272), Expect = 7e-30
Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 65/215 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + F +Y PT+ D+Y + +D + L + DTAGQE++ +R
Sbjct: 28 GVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYM 87
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ D F I +S+
Sbjct: 88 ------------------------------------------------RTGDGFLIVYSV 99
Query: 121 VNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ ASFE+V +++ + S P+ILV K+DL ++ +T QG
Sbjct: 100 TDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHLRK------------VTRDQG 146
Query: 179 LSMAKEIGAVKYLECSALT-QKGLKTVFDEAIRAV 212
MA + + Y+E SA + F + +R +
Sbjct: 147 KEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVI 180
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 108 bits (272), Expect = 9e-30
Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GK+ L + + T F EY P + D YS+ VD +P++L + DTA +
Sbjct: 31 GAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP-------- 82
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F + +S+
Sbjct: 83 -------------------RNCERY---------LN-------------WAHAFLVVYSV 101
Query: 121 VNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ SF++ + + H S P +L+G KLD+ ++ +T
Sbjct: 102 DSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQYRQ------------VTKA 148
Query: 177 QGLSMAKEIGAVKYLECSALTQK-GLKTVFDEAIRAV 212
+G+++A G + E SA ++ VF EA+R
Sbjct: 149 EGVALAGRFG-CLFFEVSACLDFEHVQHVFHEAVREA 184
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 108 bits (272), Expect = 1e-29
Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 74/239 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 73
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F F++
Sbjct: 74 ------------------------------------------------RTGEGFLCVFAI 85
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
N SFE++ + +++ P++LVG K DL + + Q
Sbjct: 86 NNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDL-PSRT------------VDTKQA 131
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL---------CPVPTVPKKKRCVLL 228
+A+ G + ++E SA T++G+ F +R + K +CV++
Sbjct: 132 QDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 108 bits (272), Expect = 1e-29
Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 31 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 90
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F F++
Sbjct: 91 ------------------------------------------------RTGEGFLCVFAI 102
Query: 121 VNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
N SF ++ + +++ P++LVG K DL + + Q
Sbjct: 103 NNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDL-PTRT------------VDTKQA 148
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+AK G + ++E SA T++G++ F +R +
Sbjct: 149 HELAKSYG-IPFIETSAKTRQGVEDAFYTLVREI 181
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 108 bits (272), Expect = 1e-29
Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 66/215 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + T F EY PT+ Y +D + +++ + DTAGQED R
Sbjct: 38 GVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-IQREGHM 96
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F + + +
Sbjct: 97 ------------------------------------------------RWGEGFVLVYDI 108
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SFE V + + +ILVG K DL ++ ++ +G
Sbjct: 109 TDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHSRQ------------VSTEEG 155
Query: 179 LSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAV 212
+A E+ + ECSA T +G + +F E R V
Sbjct: 156 EKLATELA-CAFYECSACTGEGNITEIFYELCREV 189
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 107 bits (270), Expect = 1e-29
Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L + + D Y + VDG+ L + DT E
Sbjct: 14 GVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL-------- 65
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ S + L+ + I +S+
Sbjct: 66 -----------------DKSWSQESCLQG---------------------GSAYVIVYSI 87
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SFE+ + ++R H PIILVG K DL +E ++ +G
Sbjct: 88 ADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARCRE------------VSVEEG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A K++E SA Q + +F+ +R +
Sbjct: 135 RACAVVFD-CKFIETSATLQHNVAELFEGVVRQL 167
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 107 bits (269), Expect = 1e-29
Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + G Y +++VDG+ +L ++D Q+ L
Sbjct: 12 GVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCM 70
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
D + I +S+
Sbjct: 71 ------------------------------------------------AMGDAYVIVYSV 82
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SFE + ++R PIILVG K DL +E ++ +G
Sbjct: 83 TDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRSRE------------VSVDEG 129
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A K++E SA ++ +F+ +R +
Sbjct: 130 RACAVVFD-CKFIETSAALHHNVQALFEGVVRQI 162
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 106 bits (268), Expect = 2e-29
Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F E PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 13 GVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F F++
Sbjct: 73 ------------------------------------------------RTGEGFLCVFAI 84
Query: 121 VNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
N SFE++ ++ +++ P++LVG K DL + + Q
Sbjct: 85 NNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDL-AART------------VESRQA 130
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+ G + Y+E SA T++G++ F +R +
Sbjct: 131 QDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 104 bits (263), Expect = 1e-28
Identities = 47/217 (21%), Positives = 70/217 (32%), Gaps = 69/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ ++ Y F +Y T+ D + V+ + + L LWDTAGQE
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE---EFD--- 68
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQ---KGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQI 116
A+T+ +G A VL VF
Sbjct: 69 ---------------------AITKAYYRG-------AQACVL-------------VFST 87
Query: 117 CFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ SFE + W +V P LV K+DL DD I
Sbjct: 88 T----DRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDSC------------IKNE 130
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ +AK + +++ S + VF L
Sbjct: 131 EAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHL 166
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 104 bits (263), Expect = 2e-28
Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 67/216 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL+ + N F G YI T+ D V ++G+ + L +WDTAGQE R R +
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE---RFRTIT 75
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + G G+ V+D
Sbjct: 76 STYYR---------GTH-----------GVIVVYD------------------------- 90
Query: 118 FSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ + SF NV+ +W E+ +C ILVG K D + K +
Sbjct: 91 --VTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKV------------VETED 135
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A ++G ++ E SA ++ +F+ VL
Sbjct: 136 AYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVL 170
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 102 bits (257), Expect = 2e-27
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 67/217 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGKT L+ +T + F TV D V + GK I L +WDTAGQE R +
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE---RFNSIT 92
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + A G+ V+D
Sbjct: 93 SAYYR---------SAK-----------GIILVYD------------------------- 107
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ +F+++ KW + + ++LVG KLD D+E IT
Sbjct: 108 --ITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDRE------------ITRQ 152
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
QG A++I +++ E SA + +F + + +L
Sbjct: 153 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 102 bits (257), Expect = 2e-27
Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 67/217 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKTC++ + T AF T+ D + + GK + L +WDTAGQE R R +
Sbjct: 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE---RFRTIT 95
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + A G +D
Sbjct: 96 QSYYR---------SAN-----------GAILAYD------------------------- 110
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ +SF +V W +VR + + +L+G K DL + +E ++
Sbjct: 111 --ITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSELRE------------VSLA 155
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ S+A+ + +E SA ++ F ++
Sbjct: 156 EAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 101 bits (253), Expect = 1e-26
Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y I A +FD
Sbjct: 85 Y----------IQAQ-----------CAIIMFD--------------------------- 96
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ + +++NV W+ ++ C + PI+L G K+D++D K + +
Sbjct: 97 VTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK--------------AKSI 141
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
++ ++Y + SA + + F R ++
Sbjct: 142 VFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLI 174
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 100 bits (252), Expect = 1e-26
Identities = 43/219 (19%), Positives = 73/219 (33%), Gaps = 71/219 (32%)
Query: 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNYSANVMVDGKPINLGL---WDTAGQEDYDRL 55
VGK+ L + + + D Y +MVDG+ + L W+ G+ ++ L
Sbjct: 47 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 104
Query: 56 RPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115
+ D +
Sbjct: 105 HDHCM------------------------------------------------QVGDAYL 116
Query: 116 ICFSLVNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPI 173
I +S+ + ASFE + ++R PIILVG K DL +E +
Sbjct: 117 IVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRCRE------------V 163
Query: 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ +G + A K++E SA Q +K +F+ +R V
Sbjct: 164 SVSEGRACAVVFD-CKFIETSAAVQHNVKELFEGIVRQV 201
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 99 bits (250), Expect = 2e-26
Identities = 50/217 (23%), Positives = 82/217 (37%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L Y ++F ++ TV D V K I L +WDTAGQE R R +
Sbjct: 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE---RYRTIT 88
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G ++D
Sbjct: 89 TAYYR---------GAM-----------GFLLMYD------------------------- 103
Query: 118 FSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ N SF V+ W +++ + + +ILVG K DL D++ +
Sbjct: 104 --IANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDERV------------VPAE 148
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
G +A ++G ++ E SA +K VF+ + +
Sbjct: 149 DGRRLADDLG-FEFFEASAKENINVKQVFERLVDVIC 184
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 99.6 bits (249), Expect = 2e-26
Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
GK+CLL + F + T+ + S + V GK + L +WDTAGQE R R +
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE---RFRSVT 76
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY Y +G A A+L V+ I
Sbjct: 77 RSY---------------Y--------RG-------AAGALL-------------VYDIT 93
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ ++ + W + R + IIL G K DL D+E +T+
Sbjct: 94 ----SRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDADRE------------VTFL 136
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A+E + +LE SALT + ++ F + R +L
Sbjct: 137 EASRFAQENE-LMFLETSALTGENVEEAFVQCARKIL 172
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 100 bits (250), Expect = 2e-26
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
GK+CLL + N F + T+ + S V V GK + L +WDTAGQE R R +
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE---RFRSVT 91
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY Y +G A A+L V+ I
Sbjct: 92 RSY---------------Y--------RG-------AAGALL-------------VYDIT 108
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ ++ ++ W + R P+ +IL G K DL ++E +T+
Sbjct: 109 ----SRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPERE------------VTFL 151
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A+E + +LE SALT + ++ F + R +L
Sbjct: 152 EASRFAQENE-LMFLETSALTGENVEEAFLKCARTIL 187
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 99.2 bits (248), Expect = 2e-26
Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL +T F + T+ + + + V G+ I L +WDTAGQE R R +
Sbjct: 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE---RFRAVT 81
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY Y +G A A++ V+ I
Sbjct: 82 RSY---------------Y--------RG-------AAGALM-------------VYDIT 98
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+++ ++ W + R+ P+T IIL+G K DL ++ +TY
Sbjct: 99 ----RRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD------------VTYE 141
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A+E G + +LE SA T + ++ F EA + +
Sbjct: 142 EAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIY 177
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 99.6 bits (249), Expect = 2e-26
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L Y + F ++ TV D V K + L +WDTAGQE R R +
Sbjct: 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE---RYRTIT 89
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G ++D
Sbjct: 90 TAYYR---------GAM-----------GFILMYD------------------------- 104
Query: 118 FSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ N SF V+ W +++ + + +ILVG K D+ +++ +
Sbjct: 105 --ITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEERV------------VPTE 149
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+G +A+++G + E SA ++ F+ + A+
Sbjct: 150 KGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAIC 185
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 100 bits (250), Expect = 3e-26
Identities = 45/217 (20%), Positives = 77/217 (35%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGKTCL+ +T FP T+ D V ++G+ + L +WDTAGQE R R +
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE---RFRSIT 92
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + A L +D
Sbjct: 93 QSYYR---------SAN-----------ALILTYD------------------------- 107
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ SF + +W E+ + +LVG K+DL + +E ++
Sbjct: 108 --ITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAERRE------------VSQQ 152
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ ++ + YLE SA ++ +F + ++
Sbjct: 153 RAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLI 188
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 98.5 bits (246), Expect = 7e-26
Identities = 47/217 (21%), Positives = 80/217 (36%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGKT LL +T N F + T+ + + VM+ + +WDTAG E R R +
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE---RYRAIT 91
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y Y +G A+ A+L VF +
Sbjct: 92 SAY---------------Y--------RG-------AVGALL-------------VFDLT 108
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
++ V +W E+ H + ++LVG K DL +E +
Sbjct: 109 ----KHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQARE------------VPTE 151
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A+ G + +LE SAL ++ F+ ++ +
Sbjct: 152 EARMFAENNG-LLFLETSALDSTNVELAFETVLKEIF 187
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 98.0 bits (245), Expect = 8e-26
Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGKTC+L ++ +AF +I T+ D + +DGK I L +WDTAGQE R R +
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE---RFRTIT 74
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G+ V+D
Sbjct: 75 TAYYR---------GAM-----------GIMLVYD------------------------- 89
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ N SF+N+R W + H +++G K D+ D ++ ++
Sbjct: 90 --ITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDKRQ------------VSKE 134
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+G +A + G +K++E SA ++ F R +
Sbjct: 135 RGEKLALDYG-IKFMETSAKANINVENAFFTLARDIK 170
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 98.5 bits (246), Expect = 8e-26
Identities = 52/217 (23%), Positives = 80/217 (36%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ + + + YI T+ D + +DGK I L +WDTAGQE R R +
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 99
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + GA G+ V+D
Sbjct: 100 SSYYR---------GAH-----------GIIVVYD------------------------- 114
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ + SF NV+ +W E+ + + +LVG K DL K + Y
Sbjct: 115 --VTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKKV------------VDYT 159
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A +G + +LE SA ++ F +
Sbjct: 160 TAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK 195
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 98.1 bits (245), Expect = 9e-26
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 68/216 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL +T N F E T+ + + ++ VDGK I +WDTAG E R R +
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE---RYRAIT 95
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y Y +G A+ A+L V+ I
Sbjct: 96 SAY---------------Y--------RG-------AVGALL-------------VYDIA 112
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
++ENV +W E+R H + I+LVG K DLR + +
Sbjct: 113 ----KHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRA------------VPTD 155
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ + A++ G + ++E SAL ++ F + +
Sbjct: 156 EARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI 190
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 98.5 bits (246), Expect = 1e-25
Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L Y ++F ++ TV D + + K I L +WDTAG E R R +
Sbjct: 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE---RYRTIT 74
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G ++D
Sbjct: 75 TAYYR---------GAM-----------GFILMYD------------------------- 89
Query: 118 FSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ N SF V+ W +++ + + ++LVG K D+ D++ ++
Sbjct: 90 --ITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDERV------------VSSE 134
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+G +A +G ++ E SA +K F+ + +
Sbjct: 135 RGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVIC 170
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 97.7 bits (244), Expect = 1e-25
Identities = 51/217 (23%), Positives = 84/217 (38%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ +T F + T+ + + V +DGK I L +WDTAGQE R +
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE---SFRSIT 87
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY Y +G A A+L V+ I
Sbjct: 88 RSY---------------Y--------RG-------AAGALL-------------VYDIT 104
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+F ++ W + R H + I+L+G K DL ++ +
Sbjct: 105 ----RRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRRD------------VKRE 147
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+G + A+E G + ++E SA T ++ F + +
Sbjct: 148 EGEAFAREHG-LIFMETSAKTACNVEEAFINTAKEIY 183
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 98.2 bits (245), Expect = 1e-25
Identities = 40/216 (18%), Positives = 66/216 (30%), Gaps = 65/216 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPT--VFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
VGKT + F Y T ++ + G I +WDTAGQE L+ +
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y IGA G FD
Sbjct: 81 YY----------IGAS-----------GAILFFD-------------------------- 93
Query: 119 SLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ + + +N+ +W E + PI++ K+D+++ ++ I+
Sbjct: 94 -VTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNRQK------------ISKKL 139
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + K +Y E SA T F R
Sbjct: 140 VMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFT 174
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 96.2 bits (240), Expect = 6e-25
Identities = 52/217 (23%), Positives = 80/217 (36%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ + + + YI T+ D + +DGK I L +WDTAGQE R R +
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 82
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + GA G+ V+D
Sbjct: 83 SSYYR---------GAH-----------GIIVVYD------------------------- 97
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ + SF NV+ +W E+ + + +LVG K DL K + Y
Sbjct: 98 --VTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKKV------------VDYT 142
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A +G + +LE SA ++ F +
Sbjct: 143 TAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK 178
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 96.2 bits (240), Expect = 6e-25
Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL +T N F E T+ + + ++ VDGK I +WDTAGQE R R +
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE---RYRRIT 71
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y Y +G A+ A+L V+ I
Sbjct: 72 SAY---------------Y--------RG-------AVGALL-------------VYDIA 88
Query: 118 FSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
++ENV +W E+R H + I+LVG K DLR + +
Sbjct: 89 ----KHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRA------------VPTD 131
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + A++ + ++E SAL ++ F + +
Sbjct: 132 EARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIY 167
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 96.1 bits (240), Expect = 7e-25
Identities = 51/228 (22%), Positives = 79/228 (34%), Gaps = 79/228 (34%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-----------FDNYSANVMVDGKPINLGLWDTAGQ 49
VGKT +L YT F ++I TV N + G+ I+L LWDTAG
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80
Query: 50 EDYDRLRPL--SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPK 107
E R R L ++ + A+ G +FD
Sbjct: 81 E---RFRSLTTAFFR---------DAM-----------GFLLLFD--------------- 102
Query: 108 KKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKL 165
L N SF NVR W +++ H + I+L G K DL D +
Sbjct: 103 ------------LTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQRA----- 144
Query: 166 KEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + +A++ G + Y E SA + + + ++
Sbjct: 145 -------VKEEEARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM 184
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 94.5 bits (236), Expect = 1e-24
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 69/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ + + F +I T+ D V ++GK + L +WDTAGQE R R +
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE---RFRTIT 69
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G+ V+D
Sbjct: 70 TAYYR---------GAM-----------GIILVYD------------------------- 84
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ + +F N++ +W+ V H ++LVG K D+ + + +T
Sbjct: 85 --ITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDM-ETRV------------VTAD 128
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
QG ++AKE+G + ++E SA + +F + +
Sbjct: 129 QGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ 164
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 94.5 bits (236), Expect = 1e-24
Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 72/221 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ L+ Y TN F + T+ + + ++ VDG + + +WDTAGQE R R L
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE---RFRSLR 73
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+ + G+ F V +
Sbjct: 74 TPFYR---------GSD-----------CCLLTFS------------VDDSQ-------- 93
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIEKLKEKKLAP 172
SF+N+ W E ++ S P +++G K+D+ +++
Sbjct: 94 -------SFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDI-SERQ------------ 132
Query: 173 ITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
++ + + ++ G Y E SA + F+EA+R VL
Sbjct: 133 VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 94.6 bits (236), Expect = 2e-24
Identities = 52/218 (23%), Positives = 84/218 (38%), Gaps = 69/218 (31%)
Query: 1 AVGKTCLLISYTTNAF-PGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
VGKTCLL+ + AF G +I TV D + + VDG + L +WDTAGQE R R +
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE---RFRSV 76
Query: 59 --SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQI 116
+Y + A L ++D
Sbjct: 77 THAYYR---------DAH-----------ALLLLYD------------------------ 92
Query: 117 CFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITY 175
+ N ASF+N++ W E+ + ++L+G K+D ++ +
Sbjct: 93 ---VTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHERV------------VKR 136
Query: 176 PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
G +AKE G + ++E SA T + F + +
Sbjct: 137 EDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELK 173
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 94.6 bits (236), Expect = 2e-24
Identities = 52/218 (23%), Positives = 85/218 (38%), Gaps = 70/218 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL+ +T + F E T+ D + VDG L +WDTAGQE R R L
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE---RFRTLT 81
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + GA G+ V+D
Sbjct: 82 PSYYR---------GAQ-----------GVILVYD------------------------- 96
Query: 118 FSLVNPASFENVRAKWYPEVRHHCPSTPI--ILVGTKLDLRDDKETIEKLKEKKLAPITY 175
+ +F + W E+ +C I +LVG K+D +++E +
Sbjct: 97 --VTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDK-ENRE------------VDR 140
Query: 176 PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+GL A++ + ++E SA T G++ F+E + ++
Sbjct: 141 NEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKII 177
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 94.3 bits (235), Expect = 2e-24
Identities = 45/231 (19%), Positives = 76/231 (32%), Gaps = 71/231 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEY--IPTVFDNYSANVMVDGKPINLGL---WDTAGQEDYDRL 55
VGK+ L + + D Y +MVDG+ + L W+ G+ ++ L
Sbjct: 16 GVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 73
Query: 56 RPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115
+ D +
Sbjct: 74 HDHCM------------------------------------------------QVGDAYL 85
Query: 116 ICFSLVNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPI 173
I +S+ + ASFE + ++R PIILVG K DL +E +
Sbjct: 86 IVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRXRE------------V 132
Query: 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
+ +G + A K++E SA Q +K +F+ +R V + K +R
Sbjct: 133 SVSEGRAXAVVFD-XKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNER 182
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 93.7 bits (234), Expect = 3e-24
Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
AVGK+ L++ + F T+ + V +D + +WDTAGQE R L
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE---RYHSLA 72
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
Y Y +G A A++ V+ I
Sbjct: 73 PMY---------------Y--------RG-------AQAAIV-------------VYDIT 89
Query: 118 FSLVNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
N SF + W E++ P+ I L G K DL + + + +
Sbjct: 90 ----NEESFARAK-NWVKELQRQASPNIVIALSGNKADLANKRA------------VDFQ 132
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ S A + + ++E SA T + +F + +
Sbjct: 133 EAQSYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLP 168
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 94.7 bits (236), Expect = 4e-24
Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 79/228 (34%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP----------INLGLWDTAGQ 49
VGKT L YT N F ++I TV D V+ + + ++L LWDTAGQ
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
Query: 50 EDYDRLRPL--SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPK 107
E R R L ++ + A+ G +FD
Sbjct: 95 E---RFRSLTTAFFR---------DAM-----------GFLLMFD--------------- 116
Query: 108 KKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKL 165
L + SF NVR W +++ + C + I+L+G K DL D +E
Sbjct: 117 ------------LTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQRE----- 158
Query: 166 KEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ Q +A + G + Y E SA T + ++ + + ++
Sbjct: 159 -------VNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM 198
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 93.4 bits (233), Expect = 5e-24
Identities = 54/215 (25%), Positives = 81/215 (37%), Gaps = 68/215 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAGQE R R L
Sbjct: 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---RFRSLI 80
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + + AV+ V+ I
Sbjct: 81 PSY---------------IRDSTV---------------AVV-------------VYDIT 97
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
N SF KW +VR I+LVG K DL D ++ ++
Sbjct: 98 ----NTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ------------VSTE 140
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211
+G AKE+ V ++E SA +K +F A
Sbjct: 141 EGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAA 174
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 93.4 bits (233), Expect = 5e-24
Identities = 50/220 (22%), Positives = 79/220 (35%), Gaps = 67/220 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDG-KPINLGLWDTAGQEDYDRLRPL 58
VGKT L+ Y + + +Y T+ D + V VDG K + +WDTAGQE + L
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y GA V+D
Sbjct: 78 FYR----------GAD-----------CCVLVYD-------------------------- 90
Query: 119 SLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIEKLKEKKLAPI 173
+ N +SFEN++ W E H + P +++G K+D + K+ +
Sbjct: 91 -VTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-----------V 137
Query: 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ +AK +G + SA + T F+E R+ L
Sbjct: 138 SEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 93.9 bits (234), Expect = 6e-24
Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 69/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ + + F +I T+ D V ++GK + L LWDTAGQE R R +
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE---RFRTIT 86
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G+ V+D
Sbjct: 87 TAYYR---------GAM-----------GIILVYD------------------------- 101
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ + +F N++ +W+ V H ++LVG K D+ + + +T
Sbjct: 102 --VTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDM-ETRV------------VTAD 145
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
QG ++AKE+G + ++E SA + +F + +
Sbjct: 146 QGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ 181
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 94.0 bits (234), Expect = 8e-24
Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL +T N F + T+ + + + ++GK I +WDTAGQE R R +
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE---RYRAIT 79
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y Y +G A+ A++ V+ I
Sbjct: 80 SAY---------------Y--------RG-------AVGALI-------------VYDIS 96
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+S+EN W E+R + + + L+G K DL + +
Sbjct: 97 ----KSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHLRA------------VPTE 139
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + A+E + + E SAL + + F+E I +
Sbjct: 140 ESKTFAQENQ-LLFTETSALNSENVDKAFEELINTIY 175
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 89.5 bits (223), Expect = 1e-22
Identities = 44/222 (19%), Positives = 65/222 (29%), Gaps = 72/222 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP-INLGLWDTAGQEDYDRLRPL 58
A GKT L + F +Y T+ D + + + G + L +WD GQ +
Sbjct: 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT---IGGKM 72
Query: 59 --SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQI 116
Y G A +L V+ I
Sbjct: 73 LDKY---------------I--------YG-------AQGVLL-------------VYDI 89
Query: 117 CFSLVNPASFENVRAKWYPEVR----HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAP 172
N SFEN+ WY V+ + LVG K+DL +
Sbjct: 90 T----NYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHMRT------------ 132
Query: 173 ITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214
I + L +E G SA T + F + +L
Sbjct: 133 IKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILG 173
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 88.5 bits (220), Expect = 5e-22
Identities = 44/219 (20%), Positives = 70/219 (31%), Gaps = 68/219 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKT L+ Y F +Y T+ D + VMVD + + + +WDTAGQE + L
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA VFD
Sbjct: 78 YR----------GAD-----------CCVLVFD--------------------------- 89
Query: 120 LVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT 174
+ P +F+ + W E + P +++G K+DL + + ++ +
Sbjct: 90 VTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW------ 142
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ Y E SA ++ F R L
Sbjct: 143 -------CYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 80.9 bits (200), Expect = 3e-19
Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 71/225 (31%)
Query: 1 AVGKTCLLISYTTNAFP--GEYIPTV---FDNYSANVMVDGK---PINLGLWDTAGQEDY 52
GKT LL G TV ++ + + K + L +WD AG+E
Sbjct: 12 GSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWP--IQIRDKRKRDLVLNVWDFAGRE-- 67
Query: 53 DRLRPL--SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 110
+ ++ YL V+D + K +
Sbjct: 68 -EFYSTHPHF----MT-----QRALYL-----------AVYD------------LSKGQ- 93
Query: 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKE--K 168
A + ++ W ++ S+P+ILVGT LD+ D+K+ + + K
Sbjct: 94 -------------AEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITK 139
Query: 169 KLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+L +G ++ + + L + I L
Sbjct: 140 ELLNK---RGFPAIRDY----HFVNATEESDALAKLRKTIINESL 177
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 81.6 bits (202), Expect = 3e-19
Identities = 35/225 (15%), Positives = 63/225 (28%), Gaps = 75/225 (33%)
Query: 1 AVGKTCLLISYT--TNAFPGEYIPTV-FDNYSANVMVDGKPINLGLW--DTAGQEDYDRL 55
VGK+ L+ +T + F +Y T + A V + +++ L+ DTAG +
Sbjct: 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD---LY 86
Query: 56 RPL--SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDV 113
+ Y + G A+L V
Sbjct: 87 KEQISQY---------------W--------NG-------VYYAIL-------------V 103
Query: 114 FQICFSLVNPASFENVRAKWYPEVR----HHCPSTPIILVGTKLDLRDDKETIEKLKEKK 169
F + + SFE+ + W+ ++ +LV K DL +
Sbjct: 104 FDVS----SMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ-------- 150
Query: 170 LAPITYPQGLSMAKEIGAVKYLECSA-LTQKGLKTVFDEAIRAVL 213
+ A + + + SA K F
Sbjct: 151 ---VRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFY 191
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 77.9 bits (192), Expect = 3e-18
Identities = 42/214 (19%), Positives = 73/214 (34%), Gaps = 61/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ +++ + +N F PT+ + V ++ + +WDTAGQE R
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE---RFA--- 66
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
+L + A A+ + +
Sbjct: 67 ---------------------SLAP----XYYRNAQAAL-----------------VVYD 84
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ P SF R W E+ I LVG K+D + + + +G
Sbjct: 85 VTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDXLQEGGERK---------VAREEG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+E G + + E SA T + + VF +
Sbjct: 135 EKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKI 167
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 78.1 bits (192), Expect = 6e-17
Identities = 30/222 (13%), Positives = 53/222 (23%), Gaps = 74/222 (33%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV---------DGKPINLGLWDTAGQED 51
GKT LL F + T N + K WD GQE
Sbjct: 51 MAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI 110
Query: 52 YDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRC 111
++ S++ +L
Sbjct: 111 MHASHQF-----------------FMTRSSV--------------YML------------ 127
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLA 171
+ + + N W + + +P+I+V K+D
Sbjct: 128 -LL-------DSRTDSNKH-YWLRHIEKYGGKSPVIVVMNKIDENPSYN----------- 167
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
I + I ++ S G++++ AVL
Sbjct: 168 -IEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKSAVL 207
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 69.9 bits (172), Expect = 3e-15
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52
GK+ L+ Y T + E P + ++VDG+ L + D G +
Sbjct: 31 SGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPEL 80
Score = 64.5 bits (158), Expect = 3e-13
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 114 FQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEKKLA 171
FSL + SF+ V ++ + P++LVGT+ + +
Sbjct: 89 VVFVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAANPRV--------- 138
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
I + ++ ++ Y E A ++ VF + + V+
Sbjct: 139 -IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
Score = 32.1 bits (74), Expect = 0.086
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 99
++ ++ Y E A ++ VF + + V+
Sbjct: 142 SRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 70.6 bits (173), Expect = 3e-15
Identities = 38/251 (15%), Positives = 72/251 (28%), Gaps = 102/251 (40%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLG----------------- 42
+VGK+ +++ T + F T+ + V ++ I
Sbjct: 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNN 76
Query: 43 --------------------LWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSAL 82
+WDTAGQE Y + PL Y GA
Sbjct: 77 VIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYR----------GAT-------- 118
Query: 83 TQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP 142
VFD + N + + + W +++
Sbjct: 119 ---CAIVVFD---------------------------ISNSNTLDRAK-TWVNQLKIS-S 146
Query: 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLK 202
+ IILV K+D + + + + A++ + +++ SA T +K
Sbjct: 147 NYIIILVANKIDK-NKFQ------------VDILEVQKYAQDNN-LLFIQTSAKTGTNIK 192
Query: 203 TVFDEAIRAVL 213
+F +
Sbjct: 193 NIFYMLAEEIY 203
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 69.2 bits (170), Expect = 6e-15
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52
GK+ L+ + T ++ T + Y ++VDG+ + + + AG D
Sbjct: 17 RSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 67
Score = 49.2 bits (118), Expect = 1e-07
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 19/109 (17%)
Query: 111 CDVFQICFSLVNPASFENVRAKWYPEVRHH----CPSTPIILVGT--KLDLRDDKETIEK 164
D FSL + SF+ V + + ++ + LVGT ++ +
Sbjct: 73 ADAVIFVFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV---- 127
Query: 165 LKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + ++ ++ Y E A + VF E + V+
Sbjct: 128 --------VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 68.4 bits (168), Expect = 1e-14
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKTCL + FP T+ D V +DG+ I + LWDTAGQE +
Sbjct: 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 82
Score = 54.5 bits (132), Expect = 2e-09
Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 122 NPASFENVRAKWYPEVRHHCPST--PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
N ASF ++ W E + H + P ILVG K DLR + +
Sbjct: 105 NMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSAIQ------------VPTDLAQ 151
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEA 208
A + E SA V +
Sbjct: 152 KFADTHS-MPLFETSAKNPNDNDHV-EAI 178
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 67.7 bits (166), Expect = 3e-14
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
AVGK+ L+ N F T+ D ++VDG+ L LWDTAGQE +
Sbjct: 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF 90
Score = 61.5 bits (150), Expect = 5e-12
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 122 NPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
SF N+R +W + + PI+LVG K D+RD T + + G
Sbjct: 112 CEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKC------VPGHFGEK 164
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A G + E SA + R V
Sbjct: 165 LAMTYG-ALFCETSAKDGSNIVEAVLHLAREVK 196
Score = 27.2 bits (61), Expect = 3.5
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 45 DTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 99
D + + + G +A G + E SA + R V
Sbjct: 144 DIRDTAATEGQKCVPG-HFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVK 196
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 64.8 bits (159), Expect = 2e-13
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKT L++ Y N F ++I T+ + + + GK +NL +WDTAGQE +
Sbjct: 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
Score = 58.7 bits (143), Expect = 4e-11
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 122 NPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+ SF+ V+ W E+R + +VG K+DL ++ ++ + S
Sbjct: 90 DEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKERH------------VSIQEAES 136
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A+ +G K+ SA KG++ +F + + ++
Sbjct: 137 YAESVG-AKHYHTSAKQNKGIEELFLDLCKRMI 168
Score = 27.8 bits (63), Expect = 1.9
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 51 DYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 99
D ++ R +S Q S A+ +G K+ SA KG++ +F + + ++
Sbjct: 122 DLEKERHVSI-QEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMI 168
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 65.4 bits (160), Expect = 2e-13
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+CLL+ ++ + + +YI T+ D V +DGK + L +WDTAGQE +
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 70
Score = 58.1 bits (141), Expect = 1e-10
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 116 ICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT 174
I + + + SF V+ W E+ + + +LVG K DL+D + +
Sbjct: 86 IVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDKRV------------VE 132
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
Y A + +LE SAL ++ F R +
Sbjct: 133 YDVAKEFADANK-MPFLETSALDSTNVEDAFLTMARQIK 170
Score = 28.0 bits (63), Expect = 2.3
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 51 DYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 99
D R + Y A + +LE SAL ++ F R +
Sbjct: 124 DLKDKRVVEY-DVAKEFADANK-MPFLETSALDSTNVEDAFLTMARQIK 170
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 64.1 bits (157), Expect = 5e-13
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
GK+ L++ + + F T+ +S + V+ + +WDTAGQE R L
Sbjct: 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---RYHSLA 78
Query: 59 -SY 60
Y
Sbjct: 79 PMY 81
Score = 57.9 bits (141), Expect = 1e-10
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 122 NPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
N ASFE + KW E++ P+ + L G K DL D ++ +T +
Sbjct: 96 NQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDARK------------VTAEDAQT 142
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+E G + ++E SA T +K +F E R +
Sbjct: 143 YAQENG-LFFMETSAKTATNVKEIFYEIARRL 173
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 63.4 bits (155), Expect = 1e-12
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+ ++ + + F PT+ + V + +WDTAGQE +
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85
Score = 56.5 bits (137), Expect = 3e-10
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 15/92 (16%)
Query: 122 NPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
SF ++ KW E++ H + + + G K DL D +E +
Sbjct: 107 KQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDIRE------------VPLKDAKE 153
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ IG +E SA ++ +F R +
Sbjct: 154 YAESIG-AIVVETSAKNAINIEELFQGISRQI 184
Score = 26.4 bits (59), Expect = 7.2
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 51 DYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 98
D +R + + A+ IG +E SA ++ +F R +
Sbjct: 139 DLSDIREVPL-KDAKEYAESIG-AIVVETSAKNAINIEELFQGISRQI 184
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 62.1 bits (152), Expect = 2e-12
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
VGK+ ++ + ++F PT+ F + V + +WDTAG E R R
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQYQNELHKFLIWDTAGLE---RFRA 70
Query: 58 L--SY 60
L Y
Sbjct: 71 LAPMY 75
Score = 58.3 bits (142), Expect = 5e-11
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 122 NPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+F ++ W E+R H PS + + G K DL D +E +
Sbjct: 90 KEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVRE------------VMERDAKD 136
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A I ++E SA + +F E R +
Sbjct: 137 YADSIH-AIFVETSAKNAININELFIEISRRIP 168
Score = 27.1 bits (61), Expect = 3.2
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 99
+ A I ++E SA + +F E R +
Sbjct: 132 RDAKDYADSIH-AIFVETSAKNAININELFIEISRRIP 168
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 63.1 bits (154), Expect = 2e-12
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAG E R R L
Sbjct: 26 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE---RFRSLI 82
Query: 59 -SY 60
SY
Sbjct: 83 PSY 85
Score = 56.6 bits (137), Expect = 4e-10
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 122 NPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
N SF+ KW +VR I+LVG K DL D ++ ++ +G
Sbjct: 100 NVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADKRQ------------VSIEEGER 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
AKE+ V ++E SA +K +F A+
Sbjct: 147 KAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 177
Score = 26.1 bits (58), Expect = 8.0
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 51 DYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 98
D R +S + G AKE+ V ++E SA +K +F A+
Sbjct: 132 DLADKRQVSI-EEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 177
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 61.2 bits (148), Expect = 1e-11
Identities = 33/240 (13%), Positives = 80/240 (33%), Gaps = 54/240 (22%)
Query: 2 VGKTCLL---ISYTTNAFPGEYIPTV----------------FDNYSANVMVDGKPINLG 42
+GK+CL + + + F ++ + + + + D +
Sbjct: 39 IGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMH 98
Query: 43 LW------DTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 96
+ D + + Y + + A ++ + + L Q GL+ F++
Sbjct: 99 IVEQTEFIDDQTFQPHRSTALQPYIKR--AAATKLASAEKLMYFCTDQLGLEQDFEQKQM 156
Query: 97 AVLCPVPTVPKKKRCDVFQICF--SLVNPASFENVRAKWYPEVRHHCPST--PIILVGTK 152
K D F + S +F++ K+ + + T PI++V TK
Sbjct: 157 P--------DGKLLVDGFLLGIDVSRGMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTK 207
Query: 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
D ++ I +++K+ ++ +E SA + + F ++ +
Sbjct: 208 CDEGVERY------------IRDAHTFALSKK--NLQVVETSARSNVNVDLAFSTLVQLI 253
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 50/300 (16%), Positives = 83/300 (27%), Gaps = 119/300 (39%)
Query: 11 YTT-NAFPGEYI--------PTVFDNYSANVMVDGKPINLGLW----DTAGQEDYDRLRP 57
Y T + G+ I + A + + +N+ W +DY P
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-TQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 58 LSYPQTGLS-------MAKEIG-----AVKYLECSALTQKGLKTV-----------FDEA 94
+S P G+ AK +G YL+ + +GL T F +
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 95 IRAVL---------C----PVPTVPKK----------------------------KRCDV 113
+R + C P ++P +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 114 F--------QICFSLVN-PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIE- 163
Q+ SLVN + V + P L G L LR K
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNL--VVS-----------GPPQSLYGLNLTLRKAKAPSGL 402
Query: 164 -----KLKEKKLA------PITYP---QGLSMAKEIGAVKYLECSALTQKG--LK-TVFD 206
E+KL P+ P L A ++ K L + ++ ++ V+D
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL-INKDLVKNNVSFNAKDIQIPVYD 461
Score = 38.5 bits (89), Expect = 0.001
Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 59/224 (26%)
Query: 13 TNAFPGEYIPTVFDNYSA---NVMVDGKPINLGLWDTAGQE--------DYDRLRPLSYP 61
T F GE + +NYSA +VDGK ++ + + L +
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 62 Q---TGLSMA-----KEIGAVKY--------L-ECSALT--------QKGLKTVFDEAIR 96
Q T + A K G + L E +AL + ++ VF R
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF---YR 1789
Query: 97 AVLCPVPTVPKKKR-CDVFQICFSLVNPASF------ENVRA---------KWYPE-VRH 139
+ V VP+ + + + +NP E ++ W E V +
Sbjct: 1790 GMTMQV-AVPRDELGRSNYGMI--AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 140 HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK 183
+ + + G L + +K +K+ I + LS+ +
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 36.4 bits (85), Expect = 0.003
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 3 GKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT + + F + IPTV F N+ + + + LWD GQ R R +
Sbjct: 34 GKTTFVNVIASGQFNEDMIPTVGF-----NMRKITKGNVTIKLWDIGGQ---PRFRSM 83
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 36.3 bits (84), Expect = 0.003
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 12/75 (16%)
Query: 1 AVGKTCLL----------ISYTTNAFPGEYIPTVFDNYSANVM--VDGKPINLGLWDTAG 48
GKT L + E T+F ++ + V G L+ G
Sbjct: 24 LSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPG 83
Query: 49 QEDYDRLRPLSYPQT 63
Q Y+ R L
Sbjct: 84 QVFYNASRKLILRGV 98
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 36.0 bits (83), Expect = 0.007
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 136 EVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSA 195
EV P ++V K+D+ D+ E I++L++ KE G + ++ SA
Sbjct: 273 EVHGEFKDLPFLVVINKIDVADE-ENIKRLEK-------------FVKEKG-LNPIKISA 317
Query: 196 LTQKGLKTVFDEAIRAVLCPVPTVPKKK 223
L G+ V +E I+ + V ++K
Sbjct: 318 LKGTGIDLVKEEIIKTLRPLAEKVAREK 345
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 35.3 bits (81), Expect = 0.010
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 133 WYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLE 192
W P + + ++LVG K DL +K+K + + + +
Sbjct: 86 WLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKH-------WMRYSAKQLGLKPEDVFL 138
Query: 193 CSALTQKGLKTVFDE 207
SA +G+ + D
Sbjct: 139 ISAAKGQGIAELADA 153
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 35.1 bits (81), Expect = 0.011
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 145 PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTV 204
I++ K+D + K + +K+ S LT G++
Sbjct: 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQ--------ILDNVKNPIKFSSFSTLTGVGVEQA 195
Query: 205 FDEAIRAVL 213
A +
Sbjct: 196 KITACELLK 204
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 34.5 bits (80), Expect = 0.019
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 145 PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTV 204
P I+V K+D+ + E +E KEK + + SA+T++GL+ +
Sbjct: 276 PQIIVANKMDMPEAAENLEAFKEK------------LTDDY---PVFPISAVTREGLREL 320
Query: 205 FDEAIRAV 212
E +
Sbjct: 321 LFEVANQL 328
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 34.0 bits (79), Expect = 0.026
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 11/64 (17%)
Query: 144 TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKT 203
P+I+V K+D + + L ++ + EI + SAL L
Sbjct: 123 KPVIVVINKIDKIGPAKNVLPLIDE------IHKKHPELTEI-----VPISALKGANLDE 171
Query: 204 VFDE 207
+
Sbjct: 172 LVKT 175
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.028
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 158 DKETIEKLKEK-KL-APITYPQGLSMAKEI 185
+K+ ++KL+ KL A + P L++ +
Sbjct: 18 EKQALKKLQASLKLYADDSAP-ALAIKATM 46
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 33.8 bits (77), Expect = 0.032
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 133 WYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLE 192
+ P + PI+LVG K DL KL + + ++ + V
Sbjct: 88 FIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLR-------WMRRMAEELGLCPVDVCL 140
Query: 193 CSALTQKGLKTVFDE 207
SA G+ V +
Sbjct: 141 VSAAKGIGMAKVMEA 155
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 33.2 bits (76), Expect = 0.045
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
GKT L + T + + ++ D+ + + + + +L L D G E LR
Sbjct: 19 GKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE---SLRF 69
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.4 bits (74), Expect = 0.068
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT LL TT++ + + D + L D G +LR
Sbjct: 60 GKTSLLTLLTTDSVR-PTVVSQE----PLSAADYDGSGVTLVDFPGHV---KLRYK 107
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 31.7 bits (72), Expect = 0.12
Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 12/58 (20%)
Query: 3 GKTCLLISYTTNAFPGEYIPTV--FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT LL TT PTV + D + L D G +LR
Sbjct: 24 GKTSLLTLLTT----DSVRPTVVSQEP---LSAADYDGSGVTLVDFPGHV---KLRYK 71
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 31.5 bits (72), Expect = 0.13
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 15/63 (23%)
Query: 1 AVGKTCLLISY---TTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRL 55
GKT ++ +NA +PT+ F ++ ++ ++D +GQ R
Sbjct: 31 NSGKTTII--NKLKPSNAQSQNILPTIGF-----SIEKFKSSSLSFTVFDMSGQ---GRY 80
Query: 56 RPL 58
R L
Sbjct: 81 RNL 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 31.1 bits (71), Expect = 0.20
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 3 GKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT LL + G+++PT+ + + +D G + R +
Sbjct: 37 GKTTLLHMLKDDRL-GQHVPTLHP-----TSEELTIAGMTFTTFDLGGH---IQARRV 85
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 31.1 bits (70), Expect = 0.22
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 1 AVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR 54
GK+ + +N + T+ +S + + L LWD GQ+ +
Sbjct: 13 GSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGNMTLNLWDCGGQDVFME 67
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 31.3 bits (72), Expect = 0.24
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 17/73 (23%)
Query: 136 EVRHHCPSTPIILVGTKLDL-RDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECS 194
++ PI+LVG KLD + +E ++ E P+ E S
Sbjct: 110 ALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL------LPE-----AEP-----RMLS 153
Query: 195 ALTQKGLKTVFDE 207
AL ++ + + +
Sbjct: 154 ALDERQVAELKAD 166
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.2 bits (71), Expect = 0.25
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 20/72 (27%)
Query: 144 TPIILVGTKLDLRDDK-ETIEKLKEKKL-APITYPQGLSMAKEIGAVKYLECSALTQKGL 201
P ++V K+D+ +K E ++ L E + A + L SAL +KG
Sbjct: 141 IPFVVVVNKIDVLGEKAEELKGLYESRYEAKV-----------------LLVSALQKKGF 183
Query: 202 KTVFDEAIRAVL 213
+ + I +L
Sbjct: 184 DDIG-KTISEIL 194
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 30.7 bits (69), Expect = 0.27
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 1 AVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL 55
GK+ + P E T + + + +N +WD GQ D+
Sbjct: 30 RSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPGQMDFFDP 85
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 30.3 bits (69), Expect = 0.35
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
A GKT +L IPT+ F NV V+ K I +WD GQ D++RPL
Sbjct: 39 AAGKTTILYKLKLGEIV-TTIPTIGF-----NVETVEYKNICFTVWDVGGQ---DKIRPL 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 30.2 bits (69), Expect = 0.37
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT LL + PT F N+ V + L +WD GQ ++RP
Sbjct: 26 NAGKTTLLKQLASEDIS-HITPTQGF-----NIKSVQSQGFKLNVWDIGGQ---RKIRPY 76
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 29.9 bits (68), Expect = 0.40
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L +PTV N+ + K I+ +WD GQ +RP
Sbjct: 32 NAGKTSILYRLHLGDV-VTTVPTVGV-----NLETLQYKNISFEVWDLGGQ---TGVRPY 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 29.9 bits (68), Expect = 0.42
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L + PT+ F N+ ++ + L +WD GQ LR
Sbjct: 28 NAGKTTILKKFNGEDVD-TISPTLGF-----NIKTLEHRGFKLNIWDVGGQ---KSLRSY 78
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 29.8 bits (68), Expect = 0.43
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L IPT+ F NV V K + +WD G +RP
Sbjct: 17 GAGKTTILYRLQVGEV-VTTIPTIGF-----NVETVTYKNLKFQVWDLGGL---TSIRPY 67
>3evp_A Circular-permutated green fluorescent protein; EGFP, chromophore,
luminescence, photoprotein, signaling protein; HET: CRO;
1.45A {Aequorea victoria}
Length = 243
Score = 30.4 bits (68), Expect = 0.44
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 128 NVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA 187
N+ H+ +TPI G L D + + P + + + + A
Sbjct: 26 NIEDGGVQLAYHYQQNTPI---GDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTA 82
Query: 188 VKYLECSALTQKG 200
KG
Sbjct: 83 AGITLGMDELYKG 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.44
Identities = 27/218 (12%), Positives = 50/218 (22%), Gaps = 89/218 (40%)
Query: 3 GKTCLLIS-----YTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQ--EDYDRL 55
GKT + + + +F W L
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFK----IF------------------WLNLKNCNSPETVL 199
Query: 56 RPL---------SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVP 106
L ++ + L ++ + L+ +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIK-----LRIHSIQAE-LRRLLKS------------K 241
Query: 107 KKKRCDVFQICFSLVNPASFENVRAKWYPEV----RHHCPSTPIILVGTKLDLRDDKETI 162
+ C LV NV + C IL+ T+ K+
Sbjct: 242 PYENC-------LLV----LLNV---QNAKAWNAFNLSCK----ILLTTR-----FKQVT 278
Query: 163 EKLKEKKLAPIT---YPQGLSM--AKEIGAVKYLECSA 195
+ L I+ + L+ K + KYL+C
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRP 315
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 30.6 bits (70), Expect = 0.44
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 145 PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTV 204
P ++ K+DL ++ E ++ L + G + L SALT GL +
Sbjct: 271 PSLVALNKVDLLEE-EAVKALADA-------------LAREG-LAVLPVSALTGAGLPAL 315
Query: 205 FDEAIRAV 212
+ V
Sbjct: 316 KEALHALV 323
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 29.5 bits (67), Expect = 0.55
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
A GKT +L IPT+ F NV V+ K I+ +WD GQ D++RPL
Sbjct: 10 AAGKTTILYKLKLGEIV-TTIPTIGF-----NVETVEYKNISFTVWDVGGQ---DKIRPL 60
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 29.5 bits (67), Expect = 0.66
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L ++ N PT+ NV + +WD GQ + LR
Sbjct: 31 NAGKTTILYQFSMNEVV-HTSPTIGS-----NVEEIVINNTRFLMWDIGGQ---ESLRSS 81
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.8 bits (68), Expect = 0.70
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 16/69 (23%)
Query: 145 PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTV 204
I+ TK+DL +D++T + ++ + IG S+ Q L
Sbjct: 119 QPIICITKMDLIEDQDTEDTIQAY----------AEDYRNIG-YDVYLTSSKDQDSL--- 164
Query: 205 FDEAIRAVL 213
I
Sbjct: 165 --ADIIPHF 171
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 29.1 bits (66), Expect = 0.71
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L PT+ F NV + K + L +WD GQ +RP
Sbjct: 28 GAGKTTILYRLQIGEVV-TTKPTIGF-----NVETLSYKNLKLNVWDLGGQ---TSIRPY 78
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 29.9 bits (67), Expect = 0.73
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 10/40 (25%)
Query: 21 IPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
IPT+ F NV V+ K I+ +WD GQ D++RPL
Sbjct: 194 IPTIGF-----NVETVEYKNISFTVWDVGGQ---DKIRPL 225
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 29.1 bits (66), Expect = 0.80
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
GKT +L ++ N PT+ NV + +WD GQ + LR
Sbjct: 26 NAGKTTILYQFSMNEVV-HTSPTIGS-----NVEEIVINNTRFLMWDIGGQ---ESLRSS 76
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 29.2 bits (66), Expect = 0.80
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 145 PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTV 204
P I+ KLD K+K + + + ++ SA ++ +
Sbjct: 124 PTIVAVNKLD---------KIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERL 174
Query: 205 FDEAIRAVL 213
+ I V+
Sbjct: 175 KN-RIFEVI 182
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 29.5 bits (66), Expect = 1.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 10/40 (25%)
Query: 21 IPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPL 58
IPTV F NV V K + +WD GQ D++RPL
Sbjct: 351 IPTVGF-----NVETVTYKNVKFNVWDVGGQ---DKIRPL 382
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 29.2 bits (66), Expect = 1.1
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 135 PEVRHHCPSTPIILVGTKLDLRDDKET---IEKLKEKKLAPITY--PQGLSMAKEIGAVK 189
P + + P I++ K D D T E + + + ++ G + + + A K
Sbjct: 42 PMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASK 101
Query: 190 YLECSALTQKGLKTVFDEAIRAVLCPVPTVPK 221
+ + K V AIRA++ +P V K
Sbjct: 102 EILQEKFDRMRAKGVKPRAIRALIIGIPNVGK 133
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 29.0 bits (66), Expect = 1.4
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 144 TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKT 203
P+IL K+D +K + + +A ++ + + SA T + T
Sbjct: 117 APVILAVNKVDNVQEKADLLPHLQF------------LASQMNFLDIVPISAETGLNVDT 164
Query: 204 VFDE 207
+
Sbjct: 165 IAAI 168
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 28.3 bits (64), Expect = 1.5
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 20/75 (26%)
Query: 127 ENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG 186
+ W + PI +V K D+ + + ++ L +
Sbjct: 99 VDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL------------- 145
Query: 187 AVKYLECSALTQKGL 201
SA T +G+
Sbjct: 146 -------SARTGEGV 153
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 28.8 bits (65), Expect = 1.5
Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 13/124 (10%)
Query: 67 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASF 126
+ K +G + + S++T +GL+ + ++ + K + +
Sbjct: 135 LQKHLG-IPVVFTSSVTGEGLEELKEKIVE-------YAQKNTILHRMILDY----GEKV 182
Query: 127 ENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG 186
E+ K +R K L D E + + L ++ + + I
Sbjct: 183 ESEIKKVENFLRDKKLRINPRYFALKY-LSGDPEFYSEGVKLGLPELSEEERIGYRLLIA 241
Query: 187 AVKY 190
K
Sbjct: 242 KRKR 245
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.4 bits (64), Expect = 1.9
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 17/69 (24%)
Query: 145 PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTV 204
++V K+DL DD+ ++ + E+ + + + IG + L S+ TQ GL
Sbjct: 162 EPLIVLNKIDLLDDEG-MDFVNEQ----------MDIYRNIG-YRVLMVSSHTQDGL--- 206
Query: 205 FDEAIRAVL 213
+ + L
Sbjct: 207 --KPLEEAL 213
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 27.9 bits (63), Expect = 2.8
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 16/67 (23%)
Query: 135 PEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECS 194
E++ P+ + V KLD + + + + + + + S
Sbjct: 335 RELKAAHPAAKFLTVANKLDRAANADALIRAIA----------------DGTGTEVIGIS 378
Query: 195 ALTQKGL 201
AL G+
Sbjct: 379 ALNGDGI 385
>3kdn_A Rubisco, ribulose bisphosphate carboxylase;
ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca
dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A
{Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A*
3a12_A* 1geh_A*
Length = 444
Score = 27.8 bits (61), Expect = 3.3
Identities = 18/141 (12%), Positives = 45/141 (31%), Gaps = 18/141 (12%)
Query: 9 ISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMA 68
I+Y +AF +P + + + N+ + L L D E +R P G+
Sbjct: 89 IAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKL--IREFDGPAFGIEGV 146
Query: 69 KE---------IGAVKYLECSALTQKGLKTVFDEAIRAVLC------PVPTVPKKKRCDV 113
++ G V + + + + + + + + + +
Sbjct: 147 RKMLEIKDRPIYGVVPKP-KVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEER 205
Query: 114 FQICFSLVNPASFENVRAKWY 134
+I +++ E K +
Sbjct: 206 AEIMAKIIDKVENETGEKKTW 226
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha
sandwich, structural genomics, PSI-2, prote structure
initiative; 2.35A {Agrobacterium tumefaciens str}
Length = 173
Score = 27.0 bits (60), Expect = 4.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 44 WDTAGQEDYDRLRPLSYPQTGLSMAKEIGA 73
W G+ D+D R L+ + G + A+ I
Sbjct: 21 WAAPGERDFD--RGLN--EAGFAEAEIIAD 46
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 27.1 bits (61), Expect = 5.9
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 17/66 (25%)
Query: 136 EVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSA 195
E+ P+ILV K+DL + + + + I + +A
Sbjct: 323 EIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQI-----------------VHTAA 365
Query: 196 LTQKGL 201
++G+
Sbjct: 366 AQKQGI 371
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 26.1 bits (58), Expect = 7.9
Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191
+ +D ++ IE+LK +A + + A+E ++K +
Sbjct: 40 EWKDQRKEIERLK-SVIADLWADILMERAEEFDSMKVV 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,563,731
Number of extensions: 207645
Number of successful extensions: 903
Number of sequences better than 10.0: 1
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 293
Length of query: 228
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,188,903
Effective search space: 578068614
Effective search space used: 578068614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)