BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8280
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN +V+ + RH + + + +I +L++AD T V LP DI F N
Sbjct: 142 GNCLVMYVIL--RHTKMKTATN---IYIFNLALAD--TLVLLTLPFQGTDILLGFWPFGN 194
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPL 143
CK V + F S++ L A+++DRY AICHP+
Sbjct: 195 ALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPI 230
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 73 YFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWT-----CKLVKFVQPSGSFLSSYI 127
YF+++L+ A+ FN + +N+ + + W CK F + F S Y
Sbjct: 69 YFLVNLAFAEASMAAFNTV------VNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 128 LMAIAIDRYRAICHPL 143
+ A+A DRY AI HPL
Sbjct: 123 MTAVAFDRYMAIIHPL 138
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V+ A KQ+K YF+L L+ ADL+ GV ++ + I R+ N
Sbjct: 29 GNILVIVAF----KVNKQLKTVN-NYFLLSLACADLIIGVISMNLFTTYIIMNRW-ALGN 82
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146
C L + S S L+ I+ DRY +I PLTY
Sbjct: 83 LACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYR 121
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Query: 53 LAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWT--- 109
L LY+ R RK + +Y I+ LS+ADL+ G V+P +N + S W+
Sbjct: 27 LLVLYAVRSERKLHTVGNLY--IVSLSVADLIVGAV-VMP-----MNILYLLMSKWSLGR 78
Query: 110 --CKL---VKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTY 148
C + +V + S S +IL IDRYR++ PL Y Y
Sbjct: 79 PLCLFWLSMDYVASTASIFSVFIL---CIDRYRSVQQPLRYLKY 119
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNV-LPQLWWDINYRFPGQS 106
GN++V+ ++ RH + + YF+ L+ ADL+ GVF++ L L+ I Y G
Sbjct: 40 GNILVMVSIKVNRHLQ-----TVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPV 94
Query: 107 NWTCKL---VKFVQPSGSFLSSYILMAIAIDRYRAICHPLTY 145
C L + +V + S ++ L+ I+ DRY + PLTY
Sbjct: 95 --VCDLWLALDYVVSNASVMN---LLIISFDRYFCVTKPLTY 131
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQ-- 105
GN +V+ Y Y K + +Y F +L++AD + + LP + +NY
Sbjct: 34 GNFLVM---YVIVRYTKMKTATNIYIF--NLALADALAT--STLP--FQSVNYLMGTWPF 84
Query: 106 SNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPL 143
N CK+V + F S + L +++DRY A+CHP+
Sbjct: 85 GNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPV 122
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDI----NYRFP 103
GN +V+ + ++ R R LHLS+ADL+ + LP +W + N+ F
Sbjct: 65 GNGLVILVMGYQKKLRSMTDKYR-----LHLSVADLLFVI--TLP--FWAVDAVANWYF- 114
Query: 104 GQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHP 142
N+ CK V + + S +IL I++DRY AI H
Sbjct: 115 --GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHA 151
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDI----NYRFP 103
GN +V+ + ++ R R LHLS+ADL+ + LP +W + N+ F
Sbjct: 65 GNGLVILVMGYQKKLRSMTDKYR-----LHLSVADLLFVI--TLP--FWAVDAVANWYF- 114
Query: 104 GQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHP 142
N+ CK V + + S +IL I++DRY AI H
Sbjct: 115 --GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHA 151
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDI----NYRFP 103
GN +V+ + ++ R R LHLS+ADL+ + LP +W + N+ F
Sbjct: 65 GNGLVILVMGYQKKLRSMTDKYR-----LHLSVADLLFVI--TLP--FWAVDAVANWYF- 114
Query: 104 GQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHP 142
N+ CK V + + S +IL I++DRY AI H
Sbjct: 115 --GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHA 151
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V+ A+ + R Q + YFI L+ ADLV G+ V+P I + N
Sbjct: 58 GNVLVITAI--AKFERLQTVTN---YFITSLACADLVMGL-AVVPFGAAHILMKMWTFGN 111
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHT 147
+ C+ + S + L IA+DRY AI P Y +
Sbjct: 112 FWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQS 151
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V+ A+ + R Q + YFI L+ ADLV G+ V+P I + N
Sbjct: 57 GNVLVITAI--AKFERLQTVTN---YFITSLACADLVMGL-AVVPFGAAHILMKMWTFGN 110
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHT 147
+ C+ + S L IA+DRY AI P Y +
Sbjct: 111 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQS 150
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V+ A+ + R Q + YFI L+ ADLV G+ V+P I + N
Sbjct: 58 GNVLVITAI--AKFERLQTVTN---YFITSLACADLVMGL-AVVPFGAAHILMKMWTFGN 111
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHT 147
+ C+ + S L IA+DRY AI P Y +
Sbjct: 112 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQS 151
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 16 NGTGDPDPDPRDEDLARIEXXXXXXXXXXXXXGNLMVLAALYSRRHYRKQIKMSRMYYFI 75
N TG + E+ ++ N+ VL ++ + + + MYYFI
Sbjct: 48 NYTGKLNISADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRP-----MYYFI 102
Query: 76 LHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFL-----SSYILMA 130
+L+++DL+ GV + N G + + ++ GS S + L+A
Sbjct: 103 GNLALSDLLAGVA-------YTANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSLLA 155
Query: 131 IAIDRY 136
IAI+RY
Sbjct: 156 IAIERY 161
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 9/135 (6%)
Query: 16 NGTGDPDPD---PRDEDLARIEXXXXXXXXXXXXXGNLMVLAALYSRRHYRKQIKMSRMY 72
N + PD D RDE GN++V+ A+ + R Q +
Sbjct: 16 NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAI--AKFERLQTVTN--- 70
Query: 73 YFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIA 132
YFI L+ ADLV G+ V+P I + N+ C+ + S L IA
Sbjct: 71 YFITSLACADLVMGL-AVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIA 129
Query: 133 IDRYRAICHPLTYHT 147
+DRY AI P Y +
Sbjct: 130 VDRYFAITSPFKYQS 144
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 9/135 (6%)
Query: 16 NGTGDPDPD---PRDEDLARIEXXXXXXXXXXXXXGNLMVLAALYSRRHYRKQIKMSRMY 72
N + PD D RDE GN++V+ A+ + R Q +
Sbjct: 15 NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAI--AKFERLQTVTN--- 69
Query: 73 YFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIA 132
YFI L+ ADLV G+ V+P I + N+ C+ + S L IA
Sbjct: 70 YFITSLACADLVMGL-AVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIA 128
Query: 133 IDRYRAICHPLTYHT 147
+DRY AI P Y +
Sbjct: 129 VDRYFAITSPFKYQS 143
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V+AA+ S + + + FI L+ ADLV G+ V+P + G
Sbjct: 28 GNVLVIAAIGSTQRLQTLTNL-----FITSLACADLVVGLL-VVP---FGATLVVRGTWL 78
Query: 108 W---TCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHT 147
W C+L + S L IAIDRY AI P Y +
Sbjct: 79 WGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQS 121
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V A++ + + YF++ L+ AD++ GV + + I+ F +
Sbjct: 23 GNVLVCWAVWLNSNLQNVTN-----YFVVSLAAADILVGVLAIPFAI--TISTGFCAACH 75
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146
+ FV S + L+AIAIDRY AI PL Y+
Sbjct: 76 GCLFIACFVLVLAQS-SIFSLLAIAIDRYIAIAIPLRYN 113
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V+AA+ S + + + FI L+ ADLV G+ V+P + G
Sbjct: 28 GNVLVIAAIGSTQRLQTLTNL-----FITSLACADLVVGLL-VVP---FGATLVVRGTWL 78
Query: 108 W---TCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHT 147
W C+L + S L IAIDRY AI P Y +
Sbjct: 79 WGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQS 121
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V+ A+ + R Q + YFI L+ ADLV G+ V+P I + N
Sbjct: 27 GNVLVITAI--AKFERLQTVTN---YFITSLACADLVMGL-AVVPFGAAHILMKMWTFGN 80
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHT 147
+ C+ + S L IA+DRY AI P Y +
Sbjct: 81 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQS 120
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V+ A+ + R Q + YFI L+ ADLV G+ V+P I + N
Sbjct: 26 GNVLVITAI--AKFERLQTVTN---YFITSLACADLVMGL-AVVPFGAACILMKMWTFGN 79
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHT 147
+ C+ + S L IA+DRY AI P Y +
Sbjct: 80 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQS 119
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V+ A+ + R Q + YFI L+ ADLV G+ V+P I + N
Sbjct: 199 GNVLVITAI--AKFERLQTVTN---YFITSLACADLVMGL-AVVPFGAAHILTKTWTFGN 252
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHT 147
+ C+ + S L IA+DRY AI P Y +
Sbjct: 253 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQS 292
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIAD-LVTGVFNVLPQLWWDINYRFPGQS 106
GN +V+ + Y K + +Y F +L++AD LVT ++ ++ F
Sbjct: 39 GNSLVMFVII---RYTKMKTATNIYIF--NLALADALVTTTMPFQSTVYLMNSWPF---G 90
Query: 107 NWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPL 143
+ CK+V + F S + L +++DRY A+CHP+
Sbjct: 91 DVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV 127
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 74 FILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWT-----CKLVKFVQPSGSFLSSYIL 128
++LHL+ AD++ +VLP + I+Y F G S+W C+ V + S ++
Sbjct: 58 YMLHLATADVL--FVSVLP---FKISYYFSG-SDWQFGSELCRFVTAAFYCNMYASILLM 111
Query: 129 MAIAIDRYRAICHPL 143
I+IDR+ A+ +P+
Sbjct: 112 TVISIDRFLAVVYPM 126
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V+ A+ + R Q + YFI L+ ADLV G+ V+P I + N
Sbjct: 22 GNVLVITAI--AKFERLQTVTN---YFITSLACADLVMGL-AVVPFGAAHILTKTWTFGN 75
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHT 147
+ C+ + S L IA+DRY AI P Y +
Sbjct: 76 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQS 115
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V A++ + + YF++ L+ AD+ GV + + +
Sbjct: 48 GNVLVCWAVWLNSNLQNVTN-----YFVVSLAAADIAVGVLAIPFAITISTGFCAACHGC 102
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146
V S S L+AIAIDRY AI PL Y+
Sbjct: 103 LFIACFVLVLTQSSIFS---LLAIAIDRYIAIRIPLRYN 138
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V A++ + + YF++ L+ AD+ GV + + +
Sbjct: 38 GNVLVCWAVWLNSNLQNVTN-----YFVVSLAAADIAVGVLAIPFAITISTGFCAACHGC 92
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146
V S S L+AIAIDRY AI PL Y+
Sbjct: 93 LFIACFVLVLTQSSIFS---LLAIAIDRYIAIRIPLRYN 128
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 110 CKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPL 143
CK V + F S + L +++DRY A+CHP+
Sbjct: 86 CKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV 119
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQ-- 105
GN +V A+ R + Y ++ L++ADL+ V+P W + G
Sbjct: 55 GNGLVCMAVLKERALQTTTN-----YLVVSLAVADLLVATL-VMP---WVVYLEVTGGVW 105
Query: 106 --SNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146
S C + + S + L AI+IDRY A+ P+ Y
Sbjct: 106 NFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQ 148
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 73 YFILHLSIADLVTGVFNVLPQLWWDIN-YRFPGQSNWTCKLVKFVQPSGSFLSSYILMAI 131
Y +L+L++ADL L+ ++ Y G + C L F G ++ + L+ +
Sbjct: 75 YILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG--CNLEGFFATLGGEIALWSLVVL 132
Query: 132 AIDRYRAICHPLT 144
AI+RY +C P++
Sbjct: 133 AIERYVVVCKPMS 145
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 73 YFILHLSIADLVTGVFNVLPQLWWDIN-YRFPGQSNWTCKLVKFVQPSGSFLSSYILMAI 131
Y +L+L++ADL L+ ++ Y G + C L F G ++ + L+ +
Sbjct: 74 YILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG--CNLEGFFATLGGEIALWSLVVL 131
Query: 132 AIDRYRAICHPLT 144
AI+RY +C P++
Sbjct: 132 AIERYVVVCKPMS 144
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 73 YFILHLSIADLVTGVFNVLPQLWWDIN-YRFPGQSNWTCKLVKFVQPSGSFLSSYILMAI 131
Y +L+L++ADL L+ ++ Y G + C L F G ++ + L+ +
Sbjct: 75 YILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG--CNLEGFFATLGGEIALWSLVVL 132
Query: 132 AIDRYRAICHPLT 144
AI+RY +C P++
Sbjct: 133 AIERYVVVCKPMS 145
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 73 YFILHLSIADLVTGVFNVLPQLWWDIN-YRFPGQSNWTCKLVKFVQPSGSFLSSYILMAI 131
Y +L+L++ADL L+ ++ Y G + C L F G ++ + L+ +
Sbjct: 75 YILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG--CNLQGFFATLGGEIALWSLVVL 132
Query: 132 AIDRYRAICHPLT 144
AI+RY +C P++
Sbjct: 133 AIERYVVVCKPMS 145
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 73 YFILHLSIADLVTGVFNVLPQLWWDIN-YRFPGQSNWTCKLVKFVQPSGSFLSSYILMAI 131
Y +L+L++ADL L+ ++ Y G + C L F G ++ + L+ +
Sbjct: 74 YILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG--CNLEGFFATLGGEIALWSLVVL 131
Query: 132 AIDRYRAICHPLT 144
AI+RY +C P++
Sbjct: 132 AIERYVVVCKPMS 144
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 73 YFILHLSIADLVTGVFNVLPQLWWDIN-YRFPGQSNWTCKLVKFVQPSGSFLSSYILMAI 131
Y +L+L++ADL L+ ++ Y G + C L F G ++ + L+ +
Sbjct: 75 YILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG--CNLEGFFATLGGEIALWSLVVL 132
Query: 132 AIDRYRAICHPLT 144
AI+RY +C P++
Sbjct: 133 AIERYVVVCKPMS 145
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V A++ + + YF++ L+ AD+ GV + + I+ F +
Sbjct: 23 GNVLVCWAVWLNSNLQNVTN-----YFVVSLAAADIAVGVLAIPFAI--TISTGFCAACH 75
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146
+ FV S + L+AIAIDRY AI PL Y+
Sbjct: 76 GCLFIACFVLVLTQS-SIFSLLAIAIDRYIAIRIPLRYN 113
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 109 TCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLI 152
+CK +K++ P + ++Y+LMA+ I Y + HPL Y+ ++ +
Sbjct: 849 SCKKIKYMFPK-AHAAAYVLMAVRI-AYFKVHHPLLYYASYFTV 890
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107
GN++V A++ + + YF++ + AD++ GV + + +
Sbjct: 23 GNVLVCWAVWLNSNLQNVTN-----YFVVSAAAADILVGVLAIPFAIAISTGFCAACHGC 77
Query: 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146
V + S S L+AIAIDRY AI PL Y+
Sbjct: 78 LFIACFVLVLTASSIFS---LLAIAIDRYIAIRIPLRYN 113
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 110 CKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHT 147
C+ F++ + ++ ++ + ++++ RY AICHP T
Sbjct: 110 CRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKT 147
>pdb|3ZN3|A Chain A, N-terminal Domain Of S. Pombe Cdc23 Apc Subunit
Length = 291
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 9 IPFPGTQNGTGDPDPDPRDEDLARIE 34
IPF T G D DPD +E L +E
Sbjct: 44 IPFSSTPTGEFDLDPDMANEKLLEVE 69
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 74 FILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAI 133
FI++L+ +D + N P + + CK+ F+ F+S + I+I
Sbjct: 72 FIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISI 131
Query: 134 DRYRAICHPLT 144
DRY I P+
Sbjct: 132 DRYNVIGRPMA 142
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 74 FILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAI 133
FI++L+ +D + N P + + CK+ F+ F+S + I+I
Sbjct: 71 FIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISI 130
Query: 134 DRYRAICHPLT 144
DRY I P+
Sbjct: 131 DRYNVIGRPMA 141
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 107 NWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHP 142
+ CK+V ++ + +L I++DRY AI H
Sbjct: 79 TFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHA 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,000,986
Number of Sequences: 62578
Number of extensions: 177999
Number of successful extensions: 318
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 42
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)