Query psy8280
Match_columns 158
No_of_seqs 102 out of 1305
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 23:27:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 1.3E-22 2.9E-27 157.1 7.5 115 26-146 30-144 (423)
2 PHA03234 DNA packaging protein 99.8 1.3E-20 2.7E-25 147.3 11.9 110 29-146 30-141 (338)
3 PHA02834 chemokine receptor-li 99.8 2.4E-19 5.2E-24 139.3 11.1 112 28-148 25-136 (323)
4 PHA03087 G protein-coupled che 99.8 2.9E-19 6.3E-24 139.1 10.9 118 28-153 37-154 (335)
5 PHA02638 CC chemokine receptor 99.8 2.5E-18 5.5E-23 137.7 14.2 113 30-151 97-209 (417)
6 PHA03235 DNA packaging protein 99.8 3.4E-18 7.4E-23 136.6 12.8 114 28-148 29-143 (409)
7 KOG4220|consensus 99.7 6.8E-20 1.5E-24 142.5 -2.6 116 32-153 31-146 (503)
8 PF00001 7tm_1: 7 transmembran 99.7 3.1E-17 6.6E-22 120.9 6.4 97 48-150 1-97 (257)
9 PF10320 7TM_GPCR_Srsx: Serpen 99.5 1.4E-14 3E-19 109.4 3.3 102 43-152 2-103 (257)
10 KOG2087|consensus 99.3 1.6E-12 3.4E-17 100.3 4.9 115 32-152 25-146 (363)
11 PF10328 7TM_GPCR_Srx: Serpent 99.2 1.5E-10 3.2E-15 88.1 8.0 109 41-155 3-112 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 98.5 5.9E-07 1.3E-11 69.6 8.0 100 41-146 6-114 (318)
13 PF11710 Git3: G protein-coupl 98.3 2.8E-05 6.1E-10 56.7 11.6 75 67-142 32-106 (201)
14 PF10323 7TM_GPCR_Srv: Serpent 98.1 1.4E-05 3E-10 61.3 6.9 107 43-151 6-117 (283)
15 PF10321 7TM_GPCR_Srt: Serpent 98.0 0.00013 2.9E-09 56.7 11.8 116 29-150 30-146 (313)
16 PF05296 TAS2R: Mammalian tast 97.9 0.00015 3.3E-09 56.1 10.7 110 29-141 4-113 (303)
17 PF10316 7TM_GPCR_Srbc: Serpen 97.6 0.00041 9E-09 52.9 8.6 114 33-151 7-122 (273)
18 PF05462 Dicty_CAR: Slime mold 97.6 0.0012 2.6E-08 51.1 11.2 101 32-142 7-107 (303)
19 PF03402 V1R: Vomeronasal orga 97.5 0.00018 3.9E-09 54.6 4.7 85 67-155 7-91 (265)
20 PF10292 7TM_GPCR_Srab: Serpen 97.2 0.013 2.8E-07 45.8 12.3 111 33-149 18-135 (324)
21 PF02118 Srg: Srg family chemo 97.2 0.0024 5.2E-08 48.3 7.7 110 42-153 8-124 (275)
22 PF10317 7TM_GPCR_Srd: Serpent 96.8 0.02 4.4E-07 44.0 9.8 103 37-144 4-116 (292)
23 PF02117 7TM_GPCR_Sra: Serpent 95.4 0.32 6.9E-06 38.2 10.6 114 30-148 19-139 (328)
24 PF06681 DUF1182: Protein of u 93.6 0.48 1E-05 34.7 7.0 105 34-146 43-153 (226)
25 PF10326 7TM_GPCR_Str: Serpent 92.2 0.22 4.8E-06 38.3 4.1 102 39-145 6-117 (307)
26 PF00002 7tm_2: 7 transmembran 90.9 0.15 3.3E-06 37.7 1.9 98 39-143 8-105 (242)
27 PF10327 7TM_GPCR_Sri: Serpent 87.6 4.4 9.6E-05 31.4 7.9 109 29-145 6-125 (303)
28 PF10319 7TM_GPCR_Srj: Serpent 87.0 3.1 6.7E-05 32.5 6.6 108 38-149 11-127 (310)
29 PF10318 7TM_GPCR_Srh: Serpent 86.5 3.5 7.5E-05 31.6 6.8 107 34-144 6-119 (302)
30 PF02101 Ocular_alb: Ocular al 85.0 8.9 0.00019 30.9 8.3 70 72-141 68-147 (405)
31 PF03383 Serpentine_r_xa: Caen 80.8 0.4 8.7E-06 33.5 -0.5 40 114-153 48-87 (153)
32 PF02175 7TM_GPCR_Srb: Serpent 80.1 23 0.00049 26.6 11.9 48 107-154 82-129 (236)
33 PF04789 DUF621: Protein of un 79.2 27 0.00059 27.0 9.2 101 30-138 11-118 (305)
34 KOG4193|consensus 71.3 47 0.001 28.6 9.2 84 45-141 333-417 (610)
35 PF01102 Glycophorin_A: Glycop 60.1 21 0.00046 24.0 4.1 8 53-60 85-92 (122)
36 PF11446 DUF2897: Protein of u 42.9 48 0.001 18.9 3.2 24 35-58 5-28 (55)
37 PF09882 DUF2109: Predicted me 37.4 99 0.0022 19.0 5.3 49 42-95 4-52 (78)
38 TIGR01477 RIFIN variant surfac 35.7 63 0.0014 25.8 3.9 28 35-62 311-338 (353)
39 PTZ00046 rifin; Provisional 34.8 66 0.0014 25.8 3.9 27 35-61 316-342 (358)
40 PF06679 DUF1180: Protein of u 31.8 1.9E+02 0.0041 20.5 6.0 29 32-60 93-121 (163)
41 PHA03164 hypothetical protein; 31.0 74 0.0016 19.5 2.8 21 68-88 56-76 (88)
42 PF03125 Sre: C. elegans Sre G 29.7 2.9E+02 0.0062 22.0 11.3 35 114-148 127-161 (365)
43 PF02532 PsbI: Photosystem II 26.5 89 0.0019 16.1 2.2 16 34-49 11-26 (36)
44 PF02060 ISK_Channel: Slow vol 26.5 64 0.0014 21.8 2.2 39 35-76 45-83 (129)
45 PF05393 Hum_adeno_E3A: Human 23.0 40 0.00087 21.2 0.7 19 51-72 48-66 (94)
46 PHA02767 hypothetical protein; 22.2 1.8E+02 0.004 18.1 3.5 33 124-158 51-83 (101)
47 COG1230 CzcD Co/Zn/Cd efflux s 22.0 3.9E+02 0.0085 20.9 8.9 66 37-111 126-192 (296)
No 1
>KOG4219|consensus
Probab=99.87 E-value=1.3e-22 Score=157.10 Aligned_cols=115 Identities=28% Similarity=0.501 Sum_probs=108.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccc
Q psy8280 26 RDEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQ 105 (158)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~ 105 (158)
.+.+......++|.++.+++++||.+++|++..+|+ +|+.+|+|+.|||+||++++++..+....+.+.+.|.+|
T Consensus 30 lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrr-----MRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G 104 (423)
T KOG4219|consen 30 LPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRR-----MRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFG 104 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhe-----hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccc
Confidence 344566778899999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccc
Q psy8280 106 SNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146 (158)
Q Consensus 106 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~ 146 (158)
...|++..+.......+|+++++++|+|||.||.+|++.+
T Consensus 105 -~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r 144 (423)
T KOG4219|consen 105 -SFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR 144 (423)
T ss_pred -cceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC
Confidence 9999999999999999999999999999999999999865
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.85 E-value=1.3e-20 Score=147.30 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=94.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccccccc
Q psy8280 29 DLARIEILTLLVILIITLIGNLMVLAALY--SRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQS 106 (158)
Q Consensus 29 ~~~~~~~~~~~~~~~~g~~~N~lvi~~~~--~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~ 106 (158)
..+.....+|.++.++|++||.++++++. ++++ +|+++|+++.|||+||++.++ .+|+.... ....|.+|
T Consensus 30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~-----~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~-~~~~w~fG- 101 (338)
T PHA03234 30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVA-----KHNATSFYLITLFASDFLHML-CVFFLTLN-REALFNFN- 101 (338)
T ss_pred HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccc-----cccHHHHHHHHHHHHHHHHHH-HHHHHHHH-HhCCccCc-
Confidence 35667888999999999999999999554 4455 689999999999999999987 45555443 34578888
Q ss_pred ccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccc
Q psy8280 107 NWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146 (158)
Q Consensus 107 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~ 146 (158)
+..|++..++.....++|++++++||+|||+||++|.+++
T Consensus 102 ~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~ 141 (338)
T PHA03234 102 QAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKND 141 (338)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhh
Confidence 9999999999999999999999999999999999998864
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.81 E-value=2.4e-19 Score=139.28 Aligned_cols=112 Identities=23% Similarity=0.368 Sum_probs=93.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccc
Q psy8280 28 EDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107 (158)
Q Consensus 28 ~~~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~ 107 (158)
+....+...++.++.++|++||+++++++.++++ + ++.|+++.|||++|++.+ ..+|..+. ....+|.+| +
T Consensus 25 ~~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-----~-~~~n~~i~nLAiaDll~~-~~lP~~i~-~~~~~w~~g-~ 95 (323)
T PHA02834 25 SDVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-----M-FVVDVYLFNIAMSDLMLV-FSFPFIIH-NDLNEWIFG-E 95 (323)
T ss_pred cchhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-----c-chhhhhhHHHHHHHHHHH-HHHHHHHH-HHcCCcCCc-c
Confidence 3455678899999999999999999999887654 3 568999999999999864 46665544 334578888 8
Q ss_pred cchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccE
Q psy8280 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTY 148 (158)
Q Consensus 108 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~ 148 (158)
..|++..+.......+|++++++||+|||.+|++|+++++.
T Consensus 96 ~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~ 136 (323)
T PHA02834 96 FMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNK 136 (323)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCC
Confidence 89999998888888899999999999999999999987553
No 4
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.80 E-value=2.9e-19 Score=139.08 Aligned_cols=118 Identities=23% Similarity=0.393 Sum_probs=101.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccc
Q psy8280 28 EDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSN 107 (158)
Q Consensus 28 ~~~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~ 107 (158)
+....+...++.+++++|++||+++++++.++ + +|++.++++.|||++|++.++ ..|..........|..+ +
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~-----~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~-~ 108 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-K-----IKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFG-E 108 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-c-----ccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCC-c
Confidence 44666788899999999999999999999887 6 789999999999999998876 45655545556677777 8
Q ss_pred cchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEEEEe
Q psy8280 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIG 153 (158)
Q Consensus 108 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~~~~ 153 (158)
..|++..++......+|+++++++|+|||++|++|++|++..+.++
T Consensus 109 ~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~ 154 (335)
T PHA03087 109 FACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKY 154 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhh
Confidence 8999999999999999999999999999999999999987766544
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.79 E-value=2.5e-18 Score=137.70 Aligned_cols=113 Identities=20% Similarity=0.418 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccccc
Q psy8280 30 LARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWT 109 (158)
Q Consensus 30 ~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (158)
.......++.+++++|++||+++++++.+ |+ +|++.++++.|||++|++.++ .+|..+ .....+|.+| +..
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~-----lrt~t~i~llnLAisDLl~~l-~lPf~i-~~~~~~W~fg-~~~ 167 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KK-----IKTITDIYIFNLAISDLIFVI-DFPFII-YNEFDQWIFG-DFM 167 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-----CCCHhHHHHHHHHHHHHHHHH-HHHHHH-HHHhcccccc-ccc
Confidence 44577888999999999999999987765 66 788999999999999998865 455444 3445689888 889
Q ss_pred hhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEEE
Q psy8280 110 CKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYL 151 (158)
Q Consensus 110 C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~~ 151 (158)
|++..++.....+++++.++++++|||+||++|.++++..+.
T Consensus 168 Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~ 209 (417)
T PHA02638 168 CKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTF 209 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecH
Confidence 999999999999999999999999999999999988665443
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.78 E-value=3.4e-18 Score=136.60 Aligned_cols=114 Identities=19% Similarity=0.142 Sum_probs=88.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccc-c
Q psy8280 28 EDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQ-S 106 (158)
Q Consensus 28 ~~~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~-~ 106 (158)
+..+....+++.+++++|++||+++++++.+.++.| .++..++++.|||++|++.++ .+|..+.. ..|..+ +
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~---~~~~~~~~I~NLAvsDLl~l~-~lP~~i~~---~~~~~~~g 101 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVH---GFSTPTLYMTNLYLANLLTVF-VLPFIMLS---NQGLLSGS 101 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cCCccHHHHHHHHHHHHHHHH-HHHHHHHh---cCccccCC
Confidence 335667889999999999999999999865433311 235567899999999998754 56655433 234332 2
Q ss_pred ccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccE
Q psy8280 107 NWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTY 148 (158)
Q Consensus 107 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~ 148 (158)
+..|++..++......+|++++++||+|||++|++|.++++.
T Consensus 102 ~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~ 143 (409)
T PHA03235 102 VAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARSS 143 (409)
T ss_pred CCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCc
Confidence 679999999999999999999999999999999999876543
No 7
>KOG4220|consensus
Probab=99.74 E-value=6.8e-20 Score=142.46 Aligned_cols=116 Identities=24% Similarity=0.348 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccccchh
Q psy8280 32 RIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCK 111 (158)
Q Consensus 32 ~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~C~ 111 (158)
..+.++-.++.++.++||++|++.+.-.|+ +|+..|||+.+||+||+..|.++++++..+.+.+.|..| ...|.
T Consensus 31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrq-----LqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG-~~~Cd 104 (503)
T KOG4220|consen 31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQ-----LQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLG-PLVCD 104 (503)
T ss_pred EeeehhhhHHHHHhhhccEEEEEEEEecce-----eeeecceeehHHHHhhhhhheeechHHHHHHHHcccccc-hHHHH
Confidence 345667778889999999999999999998 899999999999999999999999999999999999999 99999
Q ss_pred hhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEEEEe
Q psy8280 112 LVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIG 153 (158)
Q Consensus 112 ~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~~~~ 153 (158)
+-..+-+....+|+..+..|+.|||..|.+|+.|+.+.+.++
T Consensus 105 lWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkr 146 (503)
T KOG4220|consen 105 LWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKR 146 (503)
T ss_pred HHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchH
Confidence 999999999999999999999999999999999998877654
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.70 E-value=3.1e-17 Score=120.94 Aligned_cols=97 Identities=30% Similarity=0.526 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccccchhhhhhHhhhhhHHHHHH
Q psy8280 48 GNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYI 127 (158)
Q Consensus 48 ~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~ 127 (158)
||.++++++.++|+ +|++.++++.|||++|++.++...|..........|..+ +..|++..++.......+.+.
T Consensus 1 GN~lvi~~~~~~~~-----~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~~s~~~ 74 (257)
T PF00001_consen 1 GNILVILVILRSKR-----LRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFS-SFLCRIFGFLFYFSSFSSIFS 74 (257)
T ss_dssp HHHHHHHHHHHSGG-----G-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred Cchhehhhhhhhcc-----CCChhHHHHHHHHHHHHhhcccccccccccccccccccc-ccccccccccccccccccccc
Confidence 89999999999999 889999999999999999999777777666666678777 789999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccEEE
Q psy8280 128 LMAIAIDRYRAICHPLTYHTYFY 150 (158)
Q Consensus 128 l~~ia~dRy~ai~~P~~y~~~~~ 150 (158)
++++++|||++|++|++|++..+
T Consensus 75 ~~~is~dRy~~i~~p~~~~~~~~ 97 (257)
T PF00001_consen 75 LVAISIDRYLAICHPLRYRRIRT 97 (257)
T ss_dssp HHHHHHHHHHHHHSHHTHHHHSC
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999999988765
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.49 E-value=1.4e-14 Score=109.41 Aligned_cols=102 Identities=29% Similarity=0.349 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccccchhhhhhHhhhhhH
Q psy8280 43 IITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSF 122 (158)
Q Consensus 43 ~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 122 (158)
++|++||..++..+.|+|+ +|+|++++++.+|++|+++++..++... ..+... ... ...|....+...++..
T Consensus 2 ~ig~~gN~~~i~~~~~~~~-----Lrs~~~~li~~~~~~d~~~~~~~~~~~~-~~~~~~-~i~-~~~Cf~~~~~~~f~~~ 73 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKS-----LRSPCYILICILCFADLICLLGTLPFML-FLFRDH-QIT-RSECFWQIFFYIFFQC 73 (257)
T ss_pred EEEEEccHHHHHHHHhccc-----cccchHHHHHHHHHHHHHHHhhHHHHHH-HHHhhe-ecc-HHHHHHHHHHHHHHHH
Confidence 4688999999999999999 8899999999999999999885544443 333222 222 5589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccEEEEE
Q psy8280 123 LSSYILMAIAIDRYRAICHPLTYHTYFYLI 152 (158)
Q Consensus 123 ~s~~~l~~ia~dRy~ai~~P~~y~~~~~~~ 152 (158)
++...+.+|++||++||++|++|++..+.+
T Consensus 74 ~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~~ 103 (257)
T PF10320_consen 74 AQSVIMLAIAIDRLIAVCFPLRYRTISTRK 103 (257)
T ss_pred HHHHHHHHHHhhheeeEeehhhhhhccccc
Confidence 999999999999999999999999887665
No 10
>KOG2087|consensus
Probab=99.32 E-value=1.6e-12 Score=100.26 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhh-------hccccc
Q psy8280 32 RIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDI-------NYRFPG 104 (158)
Q Consensus 32 ~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~-------~~~~~~ 104 (158)
.++.+.-+++..++++||.+|+......+. ..++...+++|||++|+++++........... ...|+.
T Consensus 25 ~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~-----~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~ 99 (363)
T KOG2087|consen 25 WILRISVWVIALLAIVGNLLVLLTRFTSRY-----ELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ 99 (363)
T ss_pred ceeeehhhhhhhHHhccCeeeeeeeeehhh-----hccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 345566788899999999999999988887 67788999999999999999854333332211 122444
Q ss_pred ccccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEEEE
Q psy8280 105 QSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLI 152 (158)
Q Consensus 105 ~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~~~ 152 (158)
. ...|++.+++..++...|++.++++++||++.|++|++-++..+.|
T Consensus 100 t-g~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr 146 (363)
T KOG2087|consen 100 T-GLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLR 146 (363)
T ss_pred h-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCccccc
Confidence 4 6789999999999999999999999999999999999977776665
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.15 E-value=1.5e-10 Score=88.10 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccccchh-hhhhHhhh
Q psy8280 41 ILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCK-LVKFVQPS 119 (158)
Q Consensus 41 ~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~C~-~~~~~~~~ 119 (158)
+.++|++.|.++++.+.|.++ +|++.+.+..+.|++|.+.+...+....+..+....... +.... +.+.....
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~-----~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~-~~~~s~~~g~~~~~ 76 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKS-----LRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLP-SSLNSIIFGFIGMF 76 (274)
T ss_pred eeHHHHHHHHHHHHHHHhccc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCc-hHHHHHHHHHHHHH
Confidence 567899999999999999998 889999999999999999998544444433333333222 32233 44677788
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccccEEEEEeee
Q psy8280 120 GSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGRV 155 (158)
Q Consensus 120 ~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~~~~~v 155 (158)
++..+.++..+||++|+.||..|.+|+++++.+.++
T Consensus 77 ~y~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~ 112 (274)
T PF10328_consen 77 CYFIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTI 112 (274)
T ss_pred HHHHHHHHHHHHHHHHHheeeeHHHHHhHcCcccee
Confidence 888999999999999999999999999998887664
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.50 E-value=5.9e-07 Score=69.57 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccc-chHHHHHHHHHHHHHHHHHHhhHHHHHHhhhc---cccccc-----ccchh
Q psy8280 41 ILIITLIGNLMVLAALYSRRHYRKQIKM-SRMYYFILHLSIADLVTGVFNVLPQLWWDINY---RFPGQS-----NWTCK 111 (158)
Q Consensus 41 ~~~~g~~~N~lvi~~~~~~~~l~~~~~~-~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~---~~~~~~-----~~~C~ 111 (158)
+.++|+++|.+-+.++.|+. +| ++.|.++..+|++|++..+...+......... +.-.+. .....
T Consensus 6 ~~~~g~~~N~~h~~VLtrk~------mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~ 79 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVLTRKS------MRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKL 79 (318)
T ss_pred EeHHHHHHHHHHhhhcCChh------hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHH
Confidence 45789999999888887765 45 48999999999999999987666665443322 111110 11122
Q ss_pred hhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccc
Q psy8280 112 LVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146 (158)
Q Consensus 112 ~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~ 146 (158)
+...+...+-.+|.|..++||+.|++++.+|...+
T Consensus 80 ~~~~l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~ 114 (318)
T PF10324_consen 80 IMESLSDIFRRISIWLGVLMALIRYLSIKFPMSSR 114 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33455566678899999999999999999998754
No 13
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.26 E-value=2.8e-05 Score=56.75 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=59.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcc
Q psy8280 67 KMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHP 142 (158)
Q Consensus 67 ~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P 142 (158)
+|...+.++.||.++|++.++..+.......- .+....++..|...+++...+..++-+...+||++-|+.+.+|
T Consensus 32 ~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~-~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 32 RRSFRHQLILNLLLADFIQALAFLISPIRWLA-RGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45777789999999999999865553333222 2222223679999999999999999999999999999999999
No 14
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.07 E-value=1.4e-05 Score=61.33 Aligned_cols=107 Identities=21% Similarity=0.340 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhc----ccccccccchhhhhhHhh
Q psy8280 43 IITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINY----RFPGQSNWTCKLVKFVQP 118 (158)
Q Consensus 43 ~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~----~~~~~~~~~C~~~~~~~~ 118 (158)
++.++-...+++.+.+.|+.. +..+++.+-++.+-+++|++..+............. ....+ +..-++......
T Consensus 6 ~~tlply~~il~~l~~~r~~~-~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~y 83 (283)
T PF10323_consen 6 IVTLPLYIFILYCLLKLRKRS-KTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQ-TYYAAIYYNIAY 83 (283)
T ss_pred eehHHHHHHHHHHHHHcccCc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-chhHHHHHHHHH
Confidence 445666677777777776633 237899999999999999998875444333332211 11111 223444445556
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccc-ccccEEEE
Q psy8280 119 SGSFLSSYILMAIAIDRYRAICHPL-TYHTYFYL 151 (158)
Q Consensus 119 ~~~~~s~~~l~~ia~dRy~ai~~P~-~y~~~~~~ 151 (158)
..........+++|++||.+|++|. ++++.+..
T Consensus 84 ~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~ 117 (283)
T PF10323_consen 84 YFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQP 117 (283)
T ss_pred HHHHHHHHhHHHHHHhhhheEEeecHHHhhhccc
Confidence 6667888899999999999999999 66555544
No 15
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.03 E-value=0.00013 Score=56.67 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccc-cc
Q psy8280 29 DLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQ-SN 107 (158)
Q Consensus 29 ~~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~-~~ 107 (158)
..+......+.+.+++..+-...+++++.+++. .|++.|-++.-|++.|++.+...-.......+.+ -.+. .+
T Consensus 30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~-----~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G-~vfC~~P 103 (313)
T PF10321_consen 30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKL-----FKMSCYKIMFFLAIFDIIQLFINSIITGILAIFG-AVFCSYP 103 (313)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcC-ccccCCc
Confidence 345567888888999999999999999998887 7799999999999999998864323222222222 1111 01
Q ss_pred cchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEE
Q psy8280 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFY 150 (158)
Q Consensus 108 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~ 150 (158)
..=.+.+........++......+++||..-+..|...+..+.
T Consensus 104 ~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~ 146 (313)
T PF10321_consen 104 RFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFE 146 (313)
T ss_pred hHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhc
Confidence 1223334444555678899999999999999999876555544
No 16
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=97.94 E-value=0.00015 Score=56.13 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccccccccc
Q psy8280 29 DLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNW 108 (158)
Q Consensus 29 ~~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~ 108 (158)
..+....++.....++|++||+.++.+-.++...++ .-+|.+..+.+||+++++.............+....... +.
T Consensus 4 ~~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~--~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~-~~ 80 (303)
T PF05296_consen 4 SLEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSR--KLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFS-EN 80 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhh-hh
Confidence 345566788889999999999999988877654333 457999999999999999888655444444433333333 56
Q ss_pred chhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhc
Q psy8280 109 TCKLVKFVQPSGSFLSSYILMAIAIDRYRAICH 141 (158)
Q Consensus 109 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~ 141 (158)
.++...+...+....|.|..+.+++--++-|..
T Consensus 81 ~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~ 113 (303)
T PF05296_consen 81 VYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIAN 113 (303)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHheeeec
Confidence 788888888888999999999999954444443
No 17
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.65 E-value=0.00041 Score=52.95 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhh--cccccccccch
Q psy8280 33 IEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDIN--YRFPGQSNWTC 110 (158)
Q Consensus 33 ~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~--~~~~~~~~~~C 110 (158)
....+-.+...+....|...++.+..+|+ ++ ++.-.++--..+.|.+.+....+........ .......+..=
T Consensus 7 iv~~i~i~~s~~~~~iN~~lL~~if~~Kk-~k----k~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 81 (273)
T PF10316_consen 7 IVSIIGIIFSIITCLINFYLLYSIFYSKK-KK----KPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLI 81 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC----CCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEE
Confidence 34555667788889999999999997777 43 4444444457889999998655444333221 11111112222
Q ss_pred hhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEEE
Q psy8280 111 KLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYL 151 (158)
Q Consensus 111 ~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~~ 151 (158)
...+........+.......||+||..|++.|..|+++.+.
T Consensus 82 f~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k 122 (273)
T PF10316_consen 82 FYIGWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKK 122 (273)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCcc
Confidence 33344445556788889999999999999999887766543
No 18
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.64 E-value=0.0012 Score=51.14 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccccchh
Q psy8280 32 RIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCK 111 (158)
Q Consensus 32 ~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~C~ 111 (158)
.....+..+..+++++|-++++..+.+.|+ +|++.+-++.-++++|++..+..+... ........ +..|+
T Consensus 7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~-----~r~~~~rli~yl~~~~ll~~v~~~~~~----~~~~~~~~-s~lC~ 76 (303)
T PF05462_consen 7 RTLYAIELVASVLSLLGCLFIIITFCLFKR-----LRKPINRLIFYLSIANLLTNVASMIMT----LSPSAGEN-SFLCQ 76 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCccHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCC-Ccchh
Confidence 345556677789999999999999999999 788999999999999998775332221 11222223 67899
Q ss_pred hhhhHhhhhhHHHHHHHHHHHHHHHHHHhcc
Q psy8280 112 LVKFVQPSGSFLSSYILMAIAIDRYRAICHP 142 (158)
Q Consensus 112 ~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P 142 (158)
+.+++..++..++.+=.++||++=|+.++++
T Consensus 77 ~Qafliq~f~~as~lWt~~iA~nly~~~~~~ 107 (303)
T PF05462_consen 77 FQAFLIQFFMLASFLWTLCIAFNLYLTFVKR 107 (303)
T ss_pred hHhHHHHHhhHHHHHHHHHHHHHhhheeEEc
Confidence 9999999999999988888999999887764
No 19
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.49 E-value=0.00018 Score=54.59 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=65.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccc
Q psy8280 67 KMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146 (158)
Q Consensus 67 ~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~ 146 (158)
..+|.+..+.|||++|++..+....|.....+.... ++ +..||+..++...+-..|+++.+++++ |.||+--.+..
T Consensus 7 r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~~-~~-d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItISP~~s 82 (265)
T PF03402_consen 7 RLKPIDLILIHLALANILVLLSRGIPQTMAFFGWKF-FD-DIGCKIVFYIYRVARGLSICTTCLLSV--FQAITISPSNS 82 (265)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccc-CC-CceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEecCCc
Confidence 347999999999999999998766666555444433 45 889999999999999999999999999 89998544545
Q ss_pred cEEEEEeee
Q psy8280 147 TYFYLIGRV 155 (158)
Q Consensus 147 ~~~~~~~~v 155 (158)
++...+.+.
T Consensus 83 ~w~~lK~k~ 91 (265)
T PF03402_consen 83 RWAELKVKA 91 (265)
T ss_pred hhhhhhhhc
Confidence 544444443
No 20
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.21 E-value=0.013 Score=45.84 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHH---HHhhh-c---ccccc
Q psy8280 33 IEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQL---WWDIN-Y---RFPGQ 105 (158)
Q Consensus 33 ~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~---~~~~~-~---~~~~~ 105 (158)
....+.+++.++|++.++..++...+++. .|.=.-+++....++.++.+........ ...+. . +...
T Consensus 18 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-----~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~- 91 (324)
T PF10292_consen 18 LSLIFNLLLSIIAFPVIIYALWKIRNSKL-----FHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIP- 91 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccccc-
Confidence 44456677888888888888888888887 6666778888888888887753222221 11111 0 1111
Q ss_pred cccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEE
Q psy8280 106 SNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYF 149 (158)
Q Consensus 106 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~ 149 (158)
+...|...-....++......+..++.+||++|-++.-+|.+.-
T Consensus 92 ~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~ 135 (324)
T PF10292_consen 92 STYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSG 135 (324)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCC
Confidence 25568888888899999999999999999999999998887653
No 21
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.17 E-value=0.0024 Score=48.33 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHH-HHHHh------hhcccccccccchhhhh
Q psy8280 42 LIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLP-QLWWD------INYRFPGQSNWTCKLVK 114 (158)
Q Consensus 42 ~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~-~~~~~------~~~~~~~~~~~~C~~~~ 114 (158)
++.+++-+..+++.+.++|+... .+++.+.+..--++.|++.-+...+. ..... ....+....+...++..
T Consensus 8 gi~s~~l~~~~~~~i~~~~~~~~--~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (275)
T PF02118_consen 8 GIPSLILYIFILYVIWKSKKKSY--FKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFY 85 (275)
T ss_pred HHHHHHHHHHHHHHHHHhccccc--cCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHH
Confidence 45566777778888887776111 46888888888888888876643332 11111 00011111244566667
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEEEEe
Q psy8280 115 FVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIG 153 (158)
Q Consensus 115 ~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~~~~ 153 (158)
++......+...+...+++||+-++.+|.+|.+.|+...
T Consensus 86 ~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~ 124 (275)
T PF02118_consen 86 FLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY 124 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh
Confidence 777778889999999999999999999999988887554
No 22
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=96.76 E-value=0.02 Score=44.00 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcc-----cccc-----c
Q psy8280 37 TLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYR-----FPGQ-----S 106 (158)
Q Consensus 37 ~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~-----~~~~-----~ 106 (158)
++.+.+.+|++.|.+.++.+.++... .-+...+++.|-|+.|+..++....... .....+ +..| +
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~----~l~~~~~~l~~~~~~~~~~~~~~~~~q~-R~i~~~~~~~~~~~GpC~~~~ 78 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPK----SLRTYSILLLNTAIFDLISIISAFLTQP-RIIPNGTSIAVISYGPCRYFG 78 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCcEEEEeeecceecC
Confidence 56788999999999999888876431 3356678999999999999875433221 111111 1111 2
Q ss_pred ccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccc
Q psy8280 107 NWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLT 144 (158)
Q Consensus 107 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~ 144 (158)
+..|.........+...+.+++.+--..||..+.++--
T Consensus 79 ~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~ 116 (292)
T PF10317_consen 79 PWFCFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP 116 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 55677666666777778888888888899999988644
No 23
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.43 E-value=0.32 Score=38.23 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHh--hhcc-----c
Q psy8280 30 LARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWD--INYR-----F 102 (158)
Q Consensus 30 ~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~--~~~~-----~ 102 (158)
....-..+..++.++++......+..++++.-.. .+....++.+|..+++--...........+ +... .
T Consensus 19 ~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~----~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i 94 (328)
T PF02117_consen 19 NFRINQIFILIIIIITFIFSVFAIKKLWKKSIFS----NSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSI 94 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeee
Confidence 3444555667778888888888888888776522 244556666887777766553222211111 1111 1
Q ss_pred ccccccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccE
Q psy8280 103 PGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTY 148 (158)
Q Consensus 103 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~ 148 (158)
.+ +...|........++.....+...++.+||.+|-..|-.|++.
T Consensus 95 ~f-~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~~ 139 (328)
T PF02117_consen 95 LF-TSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSKK 139 (328)
T ss_pred Ee-ecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Confidence 11 2556888888888888888999999999999999998665443
No 24
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=93.57 E-value=0.48 Score=34.70 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhh------cccccccc
Q psy8280 34 EILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDIN------YRFPGQSN 107 (158)
Q Consensus 34 ~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~------~~~~~~~~ 107 (158)
....=+++...+.+.+.+.+..+.++|++=. ..+++ ..++-+..-++.+|........ +..+...-
T Consensus 43 ri~~e~~v~~~s~~~s~~L~ifi~~rk~l~~--~~ksT------IvFaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI 114 (226)
T PF06681_consen 43 RITVEFIVNTVSWLFSYFLCIFIWRRKNLIR--SYKST------IVFATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTI 114 (226)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH--hhcCe------EEEeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 4445566677777777777766666655211 11221 2223334444445655544321 11122224
Q ss_pred cchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccc
Q psy8280 108 WTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYH 146 (158)
Q Consensus 108 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~ 146 (158)
..|.++.-.......+.....+++|++||.-|..-.|-+
T Consensus 115 ~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl~ 153 (226)
T PF06681_consen 115 FVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRLS 153 (226)
T ss_pred EeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccCC
Confidence 579888776666666777777789999999998766654
No 25
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=92.20 E-value=0.22 Score=38.31 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhH--HHHHHh------hh--ccccccccc
Q psy8280 39 LVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVL--PQLWWD------IN--YRFPGQSNW 108 (158)
Q Consensus 39 ~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~--~~~~~~------~~--~~~~~~~~~ 108 (158)
-+..+++++.|.+.++.+.++.+. .-..=.+++...|+.|+..++.-.. |..... +. ..+... ..
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k----~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~-~~ 80 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPK----SLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLS-KS 80 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC----CCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeeccccccc-ch
Confidence 355678999999999998765430 1222335566788999988874332 111111 00 001111 23
Q ss_pred chhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhccccc
Q psy8280 109 TCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTY 145 (158)
Q Consensus 109 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y 145 (158)
..+........+...+...++.--+.||.++++|-+-
T Consensus 81 ~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l 117 (307)
T PF10326_consen 81 IGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKL 117 (307)
T ss_pred heeehhhhhhhhHHHHHHHHHhHhhhheeeeccchhh
Confidence 3445555556666677777777888999999999753
No 26
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=90.90 E-value=0.15 Score=37.70 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=2.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcccccccccchhhhhhHhh
Q psy8280 39 LVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQP 118 (158)
Q Consensus 39 ~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 118 (158)
.+-..+++.+=.+++..+...|+ +|+..+....||++++++..+..+.. ............ +..|.....+..
T Consensus 8 ~vg~~~Si~~ll~~i~~~~~~r~-----lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~-~~~C~~~a~~~h 80 (242)
T PF00002_consen 8 YVGCSLSIICLLLTIITYLLFRK-----LRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTN-HCLCRAIAILLH 80 (242)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccc-cccchhhhhHhH
Confidence 33444445555555555555566 55556778889999998877632211 111111111011 224999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccc
Q psy8280 119 SGSFLSSYILMAIAIDRYRAICHPL 143 (158)
Q Consensus 119 ~~~~~s~~~l~~ia~dRy~ai~~P~ 143 (158)
.+..++..=+.+.+++-|..+..+.
T Consensus 81 y~~la~f~Wm~~~~~~l~~~~~~~~ 105 (242)
T PF00002_consen 81 YFFLASFFWMLVEAFYLYRLLVKVF 105 (242)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHhheeEEEee
Confidence 8888887778888999888886653
No 27
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=87.63 E-value=4.4 Score=31.41 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccccccchHHHHH---HHHHHHHHHHHHHhhHHHHHHhhhccccc
Q psy8280 29 DLARIEILTLLVILIITLIGNLMVLAALYSR-RHYRKQIKMSRMYYFI---LHLSIADLVTGVFNVLPQLWWDINYRFPG 104 (158)
Q Consensus 29 ~~~~~~~~~~~~~~~~g~~~N~lvi~~~~~~-~~l~~~~~~~~~~~~l---~~La~~Dll~~~~~~~~~~~~~~~~~~~~ 104 (158)
+...|....+=++++++++-|.+.++.+..+ ++ +.+-.++++ ....++|+-.+.+.-|........+ +..
T Consensus 6 ~~P~~li~~~~~ig~iS~~~n~~~iyLi~fks~k-----~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag-y~~ 79 (303)
T PF10327_consen 6 STPQWLINYYHIIGVISFILNSLGIYLIIFKSPK-----LDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG-YCV 79 (303)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHheeEEEecCC-----ccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE-EEE
Confidence 3456788889999999999999999877765 44 344444443 4677899999886555444433222 111
Q ss_pred ccccchhh-------hhhHhhhhhHHHHHHHHHHHHHHHHHHhccccc
Q psy8280 105 QSNWTCKL-------VKFVQPSGSFLSSYILMAIAIDRYRAICHPLTY 145 (158)
Q Consensus 105 ~~~~~C~~-------~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y 145 (158)
| ..|+. .............-.++.--+-|..+|.+..+.
T Consensus 80 G--~l~~~f~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~ 125 (303)
T PF10327_consen 80 G--FLARYFGISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSK 125 (303)
T ss_pred e--ehhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1 23333 223333344445555555566788888877543
No 28
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=86.96 E-value=3.1 Score=32.49 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhH--HHHHHh-------hhccccccccc
Q psy8280 38 LLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVL--PQLWWD-------INYRFPGQSNW 108 (158)
Q Consensus 38 ~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~--~~~~~~-------~~~~~~~~~~~ 108 (158)
.-+.++++.+.|-+-++.+..+|+.+ + -.=.+++.--|+-|++..+.-+. .-+..+ ..++|....+.
T Consensus 11 Pk~~~~lsf~~Np~fiyli~~~~~~~---~-G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~ 86 (310)
T PF10319_consen 11 PKIFGILSFIVNPIFIYLIFTEKKSQ---F-GNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSE 86 (310)
T ss_pred HHHHHHHHHHHhhhhheeEEcccccc---c-ccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcch
Confidence 34567788999999999999988732 1 22346677899999998884332 221111 12223332222
Q ss_pred chhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEE
Q psy8280 109 TCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYF 149 (158)
Q Consensus 109 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~ 149 (158)
.-+......-....+|-..+..--+.||+++++|-..++++
T Consensus 87 l~~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F 127 (310)
T PF10319_consen 87 LGQHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYF 127 (310)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhh
Confidence 33333344445556666777778889999999996655555
No 29
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=86.48 E-value=3.5 Score=31.60 Aligned_cols=107 Identities=9% Similarity=0.022 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHH---HHHHHHHHHHHHHHHHhhHHHHHHhhhcc----ccccc
Q psy8280 34 EILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMY---YFILHLSIADLVTGVFNVLPQLWWDINYR----FPGQS 106 (158)
Q Consensus 34 ~~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~---~~l~~La~~Dll~~~~~~~~~~~~~~~~~----~~~~~ 106 (158)
.....=.+.+++++-|.+..+.+.++...+ +++-.. .+-....+.|+..+.+..|........+. ...-
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~---m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~- 81 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKS---MKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYF- 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhh---hHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhc-
Confidence 344555677888999999998777664322 333332 22334456788887765553333222111 1111
Q ss_pred ccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccc
Q psy8280 107 NWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLT 144 (158)
Q Consensus 107 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~ 144 (158)
+....+..+...........+...+--+||.++..+-+
T Consensus 82 gv~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~ 119 (302)
T PF10318_consen 82 GVPTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS 119 (302)
T ss_pred ccChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc
Confidence 22345555556666667777788888899999997643
No 30
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=85.02 E-value=8.9 Score=30.90 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhccccc----------ccccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhc
Q psy8280 72 YYFILHLSIADLVTGVFNVLPQLWWDINYRFPG----------QSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICH 141 (158)
Q Consensus 72 ~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~----------~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~ 141 (158)
.-.+..++++|++.++-.+.-............ .....|........+++.++.+=..+-|+|=|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 457789999999988743333332221111100 0125688877777788888888888889999988754
No 31
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=80.82 E-value=0.4 Score=33.47 Aligned_cols=40 Identities=10% Similarity=0.193 Sum_probs=32.7
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEEEEe
Q psy8280 114 KFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIG 153 (158)
Q Consensus 114 ~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~~~~ 153 (158)
.....+++....+.-.+|++||-..|.+|.+...+++.++
T Consensus 48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~k 87 (153)
T PF03383_consen 48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKK 87 (153)
T ss_pred eeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccch
Confidence 4455777888999999999999999999998766666554
No 32
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=80.12 E-value=23 Score=26.63 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=40.7
Q ss_pred ccchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccEEEEEee
Q psy8280 107 NWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTYFYLIGR 154 (158)
Q Consensus 107 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~~~~~~~ 154 (158)
+..++.......+.+..+...-..+++||++|....-+|.+....-|.
T Consensus 82 ~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~LGP 129 (236)
T PF02175_consen 82 PTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTLLGP 129 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCceeehh
Confidence 557888888888999999999999999999999998888776665543
No 33
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=79.20 E-value=27 Score=27.01 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--HHH-HHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhh----hccc
Q psy8280 30 LARIEILTLLVILIITLIGNL--MVL-AALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDI----NYRF 102 (158)
Q Consensus 30 ~~~~~~~~~~~~~~~g~~~N~--lvi-~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~----~~~~ 102 (158)
........+.+..+.+.+-++ +++ ..++++= ++-+...|+..|.++-+......+...++..+ ..+.
T Consensus 11 ~yy~vi~~Fv~st~~stlLt~~Flv~~i~lW~~F------k~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~ 84 (305)
T PF04789_consen 11 LYYFVISLFVLSTIASTLLTGAFLVLSIILWSHF------KPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEF 84 (305)
T ss_pred EEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHH
Confidence 333444455555554444443 333 2334332 23567899999999999988866655555443 2222
Q ss_pred ccccccchhhhhhHhhhhhHHHHHHHHHHHHHHHHH
Q psy8280 103 PGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRA 138 (158)
Q Consensus 103 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~a 138 (158)
.. +..-.++.+...++-+.-.++-..+|+.|...
T Consensus 85 ~~--s~~f~~~Sy~idf~h~siLfsNlviaIqR~fV 118 (305)
T PF04789_consen 85 VQ--SELFIFMSYLIDFCHYSILFSNLVIAIQRFFV 118 (305)
T ss_pred hc--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 21 33445667777888888889999999999543
No 34
>KOG4193|consensus
Probab=71.27 E-value=47 Score=28.63 Aligned_cols=84 Identities=8% Similarity=0.045 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccccccccc-chhhhhhHhhhhhHH
Q psy8280 45 TLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNW-TCKLVKFVQPSGSFL 123 (158)
Q Consensus 45 g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~ 123 (158)
++++=.+.++++.-.|++ ++-.+....||+++=++.-+ ..+...|....+. .|....++..++..+
T Consensus 333 SlvcL~lti~ty~~~~~l-----~~~~~~i~~~l~~~L~l~~l--------~fL~~~~~~~~~~~~C~~~a~llhff~La 399 (610)
T KOG4193|consen 333 SLVCLLLTIATYLLFRKL-----QNDRTKIHINLCLCLFLAEL--------LFLLGIDRTSTSVVLCIAAAILLHFFFLA 399 (610)
T ss_pred HHHHHHHHHHHHHHHHHH-----HhhcchhHHHHHHHHHHHHH--------HHhcccccccCcccccHHHHHHHHHHHHH
Confidence 333334444444444552 23336667788777111111 1122233333244 799999999998888
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy8280 124 SSYILMAIAIDRYRAICH 141 (158)
Q Consensus 124 s~~~l~~ia~dRy~ai~~ 141 (158)
+.+=+.+++++=|..++.
T Consensus 400 aF~Wm~leg~hl~~~~v~ 417 (610)
T KOG4193|consen 400 AFFWMLLEGFHLYLLLVE 417 (610)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888887775544
No 35
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=60.11 E-value=21 Score=23.97 Aligned_cols=8 Identities=13% Similarity=-0.018 Sum_probs=3.3
Q ss_pred HHHHhccc
Q psy8280 53 LAALYSRR 60 (158)
Q Consensus 53 i~~~~~~~ 60 (158)
.+.++|.+
T Consensus 85 ~y~irR~~ 92 (122)
T PF01102_consen 85 SYCIRRLR 92 (122)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 34444443
No 36
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=42.91 E-value=48 Score=18.91 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy8280 35 ILTLLVILIITLIGNLMVLAALYS 58 (158)
Q Consensus 35 ~~~~~~~~~~g~~~N~lvi~~~~~ 58 (158)
..+.+++.+.-++||+.++--..+
T Consensus 5 ~wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 5 PWLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred hhHHHHHHHHHHHhHHHHHHHhcc
Confidence 345566667778899998876666
No 37
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=37.37 E-value=99 Score=18.97 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy8280 42 LIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLPQLW 95 (158)
Q Consensus 42 ~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~La~~Dll~~~~~~~~~~~ 95 (158)
.+.|+++=...+-.+..+.+ .++-.|...+|-|++.+..+..-.|.-..
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r-----~~KL~yLnv~~F~iaalIaL~i~~P~g~i 52 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSR-----ARKLLYLNVINFAIAALIALYIKSPMGAI 52 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhH-----HHhhhHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34566666666666666666 56777888899999988887755554443
No 38
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=35.72 E-value=63 Score=25.84 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy8280 35 ILTLLVILIITLIGNLMVLAALYSRRHY 62 (158)
Q Consensus 35 ~~~~~~~~~~g~~~N~lvi~~~~~~~~l 62 (158)
.+..++++++.++--+++++.+.|.||-
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4456677778888888888888888773
No 39
>PTZ00046 rifin; Provisional
Probab=34.79 E-value=66 Score=25.80 Aligned_cols=27 Identities=7% Similarity=0.272 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy8280 35 ILTLLVILIITLIGNLMVLAALYSRRH 61 (158)
Q Consensus 35 ~~~~~~~~~~g~~~N~lvi~~~~~~~~ 61 (158)
.+..++++++.++--+++++.+.|.||
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRR 342 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRR 342 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345567777778888888888888877
No 40
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.77 E-value=1.9e+02 Score=20.49 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy8280 32 RIEILTLLVILIITLIGNLMVLAALYSRR 60 (158)
Q Consensus 32 ~~~~~~~~~~~~~g~~~N~lvi~~~~~~~ 60 (158)
.....+|+++++.+++.=-+++-+++.+|
T Consensus 93 ~l~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 93 MLKRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35566677766666665555555444333
No 41
>PHA03164 hypothetical protein; Provisional
Probab=31.04 E-value=74 Score=19.45 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=15.6
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q psy8280 68 MSRMYYFILHLSIADLVTGVF 88 (158)
Q Consensus 68 ~~~~~~~l~~La~~Dll~~~~ 88 (158)
|+.+.+.+..||++-+++.++
T Consensus 56 ktftFlvLtgLaIamILfiif 76 (88)
T PHA03164 56 KTFTFLVLTGLAIAMILFIIF 76 (88)
T ss_pred heeehHHHHHHHHHHHHHHHH
Confidence 466777888888888777763
No 42
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=29.75 E-value=2.9e+02 Score=21.96 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=25.8
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHhcccccccE
Q psy8280 114 KFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTY 148 (158)
Q Consensus 114 ~~~~~~~~~~s~~~l~~ia~dRy~ai~~P~~y~~~ 148 (158)
+++....+....+.+.++++||..|-.+--.|.+.
T Consensus 127 ~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 127 GFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444445666789999999999999887666554
No 43
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=26.48 E-value=89 Score=16.10 Aligned_cols=16 Identities=13% Similarity=0.465 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8280 34 EILTLLVILIITLIGN 49 (158)
Q Consensus 34 ~~~~~~~~~~~g~~~N 49 (158)
...+++.++++|.+.|
T Consensus 11 vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 11 VVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhccccCC
Confidence 3445566666666554
No 44
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=26.47 E-value=64 Score=21.81 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHH
Q psy8280 35 ILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFIL 76 (158)
Q Consensus 35 ~~~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~ 76 (158)
.-+.++++++|++.=++++-.++.+|+ .+ .+.|.+.++-
T Consensus 45 lYIL~vmgfFgff~~gImlsyvRSKK~-E~--s~DPyh~YIe 83 (129)
T PF02060_consen 45 LYILVVMGFFGFFTVGIMLSYVRSKKR-EH--SHDPYHQYIE 83 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH--------TTTTTS-
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHhhh-cc--ccChHHHHhH
Confidence 334556666777666665544443333 32 5667666654
No 45
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.98 E-value=40 Score=21.25 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=9.0
Q ss_pred HHHHHHhcccccccccccchHH
Q psy8280 51 MVLAALYSRRHYRKQIKMSRMY 72 (158)
Q Consensus 51 lvi~~~~~~~~l~~~~~~~~~~ 72 (158)
+++|.++.+++-| -|.|.|
T Consensus 48 VilwfvCC~kRkr---sRrPIY 66 (94)
T PF05393_consen 48 VILWFVCCKKRKR---SRRPIY 66 (94)
T ss_pred HHHHHHHHHHhhh---ccCCcc
Confidence 4456555444422 455544
No 46
>PHA02767 hypothetical protein; Provisional
Probab=22.17 E-value=1.8e+02 Score=18.08 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccccEEEEEeeecCC
Q psy8280 124 SSYILMAIAIDRYRAICHPLTYHTYFYLIGRVEHN 158 (158)
Q Consensus 124 s~~~l~~ia~dRy~ai~~P~~y~~~~~~~~~v~~~ 158 (158)
...--.++++-||+ .+.++|.+....+.++..|
T Consensus 51 ~~~EK~~~~I~kYl--~~TF~~P~~I~v~~~~~kN 83 (101)
T PHA02767 51 KEYEKAGMSILKYL--VHTFKYPNYIKVNWRYDKN 83 (101)
T ss_pred HHHHHHHHHHHHHH--HHHccCCCeEEEEEEEccc
Confidence 34445677887775 5667788888888887765
No 47
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=21.96 E-value=3.9e+02 Score=20.89 Aligned_cols=66 Identities=17% Similarity=0.042 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHH-HHHHHHHHHHhhHHHHHHhhhcccccccccchh
Q psy8280 37 TLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHL-SIADLVTGVFNVLPQLWWDINYRFPGQSNWTCK 111 (158)
Q Consensus 37 ~~~~~~~~g~~~N~lvi~~~~~~~~l~~~~~~~~~~~~l~~L-a~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~C~ 111 (158)
..+.++++|++.|.+..+.+.+.+. ...|.=-..| .++|.+..+..+.. ........|..- |..+-
T Consensus 126 ~ml~va~~GL~vN~~~a~ll~~~~~-------~~lN~r~a~LHvl~D~Lgsv~vIia-~i~i~~~~w~~~-Dpi~s 192 (296)
T COG1230 126 GMLVVAIIGLVVNLVSALLLHKGHE-------ENLNMRGAYLHVLGDALGSVGVIIA-AIVIRFTGWSWL-DPILS 192 (296)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCCc-------ccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCcc-chHHH
Confidence 4567889999999999999998722 1112222233 35888877633332 223333344444 44443
Done!