RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8280
(158 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 67.7 bits (166), Expect = 2e-14
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 71 MYYFILHLSIADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMA 130
F+L+L++ADL+ + L++ + +P + CKLV F+ + S +L A
Sbjct: 13 TNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPF-GDALCKLVGFLFVVNGYASILLLTA 71
Query: 131 IAIDRYRAICHPLTYHTY 148
I+IDRY AI HPL Y
Sbjct: 72 ISIDRYLAIVHPLRYRRI 89
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 37.8 bits (88), Expect = 0.001
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 27 DEDLARIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTG 86
+ + I I+ I L+GN++V+ L + +IK M ++L+L+++DL+
Sbjct: 36 YDTNSTILIVVYSTIFFFGLVGNIIVIYVLT-----KTKIKTP-MDIYLLNLAVSDLLFV 89
Query: 87 VFNVLP-QLWWDI--NYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPL 143
+ LP Q+++ I + F + CK+V + G + S + +++DRY AI HP+
Sbjct: 90 M--TLPFQIYYYILFQWSF---GEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPV 144
Query: 144 TY 145
Sbjct: 145 KS 146
>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 37.8 bits (89), Expect = 0.001
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 33 IEILTLLVILIITLIGNLMVLAAL---YSRRHYRKQIKMSR 70
L L++ L++ ++ L+V+AA+ + R Y K++KM++
Sbjct: 184 GHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTK 224
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 37.7 bits (87), Expect = 0.001
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 21/116 (18%)
Query: 39 LVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGV------FNVLP 92
++I I+ L GN ++ L+ K+IK Y I +L+I+DL+ + +N
Sbjct: 106 IIIFILGLFGNAAIIMILFC-----KKIKTITDIY-IFNLAISDLIFVIDFPFIIYNEFD 159
Query: 93 QLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTY 148
Q + ++ CK++ G F + +++ ++IDRY AI +P+++ Y
Sbjct: 160 QWIF---------GDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKY 206
>gnl|CDD|224397 COG1480, COG1480, Predicted membrane-associated HD superfamily
hydrolase [General function prediction only].
Length = 700
Score = 37.4 bits (87), Expect = 0.002
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 33 IEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVLP 92
I L L+IL+I LI +L ALY RR + + L L+I ++ + V
Sbjct: 274 ILPLLGLLILVIFLI----LLFALYERRTKSPLKLRNSLLLLYLSLAIL-TLSLLRIVGY 328
Query: 93 QLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAI 133
+ P L+ + + S ++AIA+
Sbjct: 329 FNYSASGLLVP--PALGPMLLILLVFLRIAIFSSSMIAIAL 367
>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 363
Score = 36.4 bits (85), Expect = 0.004
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 35 ILTLLVILIITLIGNLMVLAAL---YSRRHYRKQIKMSR 70
+ LL L++ ++ L+++AA Y R Y K++KM++
Sbjct: 186 FMELLGKLLLAVLLLLLIVAAFDYFYQRFQYIKKLKMTK 224
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 35.3 bits (82), Expect = 0.008
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 36 LTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVT-GVFNVLPQL 94
LTL+V+ I L + ++ RR RK I+ S L +I + T P+
Sbjct: 295 LTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRF 354
Query: 95 WWDINYRFPGQSNWTCKLVKFVQPSGSFLSS-YILMAIAI 133
+ R Q N K K + S L ++ I
Sbjct: 355 RSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLI 394
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 34.5 bits (79), Expect = 0.015
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 31/113 (27%)
Query: 35 ILTLLVILIITLIGNLMVLAALYSRRH------YRKQIKMSRM-----YYFILHLSIADL 83
I+ +++ I LIGN++V+A L +R Y I MS + + FI+H + +
Sbjct: 32 IVFYILLFIFGLIGNVLVIAVLIVKRFMFVVDVYLFNIAMSDLMLVFSFPFIIHNDLNEW 91
Query: 84 VTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRY 136
+ G F CKLV V G F + + + I+IDRY
Sbjct: 92 IFGEF--------------------MCKLVLGVYFVGFFSNMFFVTLISIDRY 124
>gnl|CDD|129428 TIGR00328, flhB, flagellar biosynthetic protein FlhB. FlhB and its
functionally equivalent orthologs, from among a larger
superfamily of proteins involved in type III protein
export systems, are specifically involved in flagellar
protein export. The seed members are restricted and the
trusted cutoff is set high such that the proteins
gathered by this model play roles specifically related
to flagellar structures. Full-length homologs scoring
below the trusted cutoff are involved in peptide export
but not necessarily in the creation of flagella
[Cellular processes, Chemotaxis and motility].
Length = 347
Score = 32.2 bits (74), Expect = 0.079
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 35 ILTLLVILIITLIGNLMVLAAL---YSRRHYRKQIKMSR 70
L + L+I ++ L+V+A + R Y K +KM++
Sbjct: 179 FLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTK 217
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 31.0 bits (71), Expect = 0.21
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 42 LIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADL--VTGVFNVLPQLWWDIN 99
+I + GN++++ + ++ R S+ Y I +ADL ++G + L+
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLR-----SKCSYLICVQCLADLLCLSGEIIFVVLLFTGTQ 55
Query: 100 YRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAICHPLTYHTY 148
++ C L+ G S +++ I IDR A+ P+ Y
Sbjct: 56 LT---RN--ECFLIIIPYIFGQTAQSPLMLMIGIDRLIAVKFPIFYRLL 99
>gnl|CDD|217407 pfam03176, MMPL, MMPL family. Members of this family are putative
integral membrane proteins from bacteria. Several of the
members are mycobacterial proteins. Many of the proteins
contain two copies of this aligned region. The function
of these proteins is not known, although it has been
suggested that they may be involved in lipid transport.
Length = 332
Score = 30.7 bits (70), Expect = 0.23
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 27 DEDLARIEILTLLVILIITLIGNLMVLAALY 57
D DL IE +TL+VI II LI V+AAL
Sbjct: 141 DRDLGLIEAVTLVVIFIILLIVYRSVVAALL 171
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 30.2 bits (69), Expect = 0.48
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 13/54 (24%)
Query: 35 ILTLLVILIITLIGNLMVLAALYSRRHYRKQI------KMSRMYYFILHLSIAD 82
++ L++ +++ +I LA L R+ K+I K + +L + D
Sbjct: 2 MIYLIIAIVVIIII--AYLAGLILRKRNYKRIDELEERKQE-----LENLPVND 48
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 29.8 bits (67), Expect = 0.55
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Query: 25 PRDEDLARIEILTLLVILIITLIG---NLMVLAA-LYSRRHYRKQIKMSRMYYFILHLSI 80
E L+ + L+I +G NL+VL L + R + S ++ +L +
Sbjct: 23 VPTEGLSAARTTETFINLLIISVGGPLNLIVLVTQLLANRVH----GFSTPTLYMTNLYL 78
Query: 81 ADLVTGVFNVLPQLWWDINYRFPGQSNWTCKLVKFVQPSGSFLSSYILMAIAIDRYRAIC 140
A+L+T VLP + N S CK + + + + IA DRYR I
Sbjct: 79 ANLLT--VFVLPFIMLS-NQGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVI- 134
Query: 141 HPLTY 145
H T
Sbjct: 135 HQRTR 139
>gnl|CDD|237156 PRK12647, PRK12647, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 761
Score = 29.5 bits (67), Expect = 0.68
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 36 LTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFIL 76
L+L L+IT IG L+VL A + + R Y +IL
Sbjct: 65 LSLTFALLITGIGTLIVLYAGGYLKGHPDL---GRFYSYIL 102
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA.
During the bacterial cell cycle, the tubulin-like
cell-division protein FtsZ polymerises into a ring
structure that establishes the location of the nascent
division site. EzrA modulates the frequency and
position of FtsZ ring formation.
Length = 559
Score = 29.5 bits (67), Expect = 0.71
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 38 LLVILIITLIGNLMVLAALYSRRHYRKQIK 67
++ I++I ++ LA + R+ KQI
Sbjct: 2 IIGIIVIVIVA---YLAGYFLRKKIYKQID 28
>gnl|CDD|110325 pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family. This family
includes the following members: FlhB, HrpN, YscU, SpaS,
HrcU SsaU and YopU. All of these proteins export
peptides using the type III secretion system. The
peptides exported are quite diverse.
Length = 343
Score = 29.2 bits (66), Expect = 0.96
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 35 ILTLLVILIITLIGNLMVLAAL---YSRRHYRKQIKMSR 70
++TLL L++ ++ L+++ L + R + K +KMS+
Sbjct: 181 VMTLLKKLLLVVLLFLLIVGLLDYLFQRYLFIKDLKMSK 219
>gnl|CDD|206509 pfam14341, PilX_N, PilX N-terminal. This domain is found at the
N-terminus of the PilX prepilin-like proteins which are
involved in type 4 fimbrial biogenesis.
Length = 51
Score = 26.3 bits (59), Expect = 1.9
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 35 ILTLLVILIITLIGNLMVLAALYSRR 60
++ LL++L++TL+G + +L R
Sbjct: 6 VVALLLLLVLTLLGVAAIQGSLLEER 31
>gnl|CDD|223724 COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+
antiporter, MnhD subunit [Energy production and
conversion / Inorganic ion transport and metabolism].
Length = 504
Score = 27.7 bits (62), Expect = 2.7
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 32 RIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVF 88
+ L+ + +LII L+G +LA+LYS Y + K YYF+L L +A + G F
Sbjct: 72 AADPLSAIFLLIIALVG---LLASLYSIG-YMRHEKERAYYYFLLLLLLAG-MLGAF 123
>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein. This family consists of
Ebola and Marburg virus nucleoproteins. These proteins
are responsible for encapsidation of genomic RNA. It has
been found that nucleoprotein DNA vaccines can offer
protection from the virus.
Length = 717
Score = 28.0 bits (62), Expect = 2.8
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 4 PSGTEIPFPGTQNGTGDPDP---DPRD 27
+IPFPG P P DP D
Sbjct: 404 DDDNDIPFPGPIEDDVQPRPMDDDPDD 430
>gnl|CDD|233200 TIGR00940, 2a6301s01, Tmonovalent cation:proton antiporter. This
family of proteins constists of bacterial multicomponent
K+:H+ and Na+:H+ antiporters. The best characterized
systems are the PhaABCDEFG system of Rhizobium meliloti
which functions in pH adaptation and as a K+ efflux
system and the MnhABCDEFG system of Staphylococcus
aureus which functions as a Na+:H+ antiporter [Transport
and binding proteins, Cations and iron carrying
compounds].
Length = 793
Score = 27.9 bits (62), Expect = 2.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 32 RIEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFIL 76
++ L LL L+IT IG VL LYS + K+ + Y ++L
Sbjct: 72 YMDGLALLFSLLITGIG---VLVVLYSIYYLSKEEPLPNFYAYLL 113
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 27.3 bits (61), Expect = 3.6
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 33 IEILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGV 87
IE +L++ +I+L+ NL L ALY RR RK K S ++ D++ +
Sbjct: 90 IEPGGILLVALISLVVNL--LLALYLRRAGRKIGKKSSALRADALHALVDVLGSL 142
>gnl|CDD|220687 pfam10316, 7TM_GPCR_Srbc, Serpentine type 7TM GPCR chemoreceptor
Srbc. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srbc is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 272
Score = 27.1 bits (61), Expect = 3.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 125 SYILMAIAIDRYRAICHPLTYHTY 148
S + + I+I+R A+ P+ YH Y
Sbjct: 95 SILALLISIERVIAVYFPIFYHNY 118
>gnl|CDD|182910 PRK11026, ftsX, cell division ABC transporter subunit FtsX;
Provisional.
Length = 309
Score = 26.5 bits (59), Expect = 5.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 27 DEDLARIEILTLLVILIITLIGNLMVLA 54
D AR+ LT LV + +IG LMV A
Sbjct: 165 DSWFARLAALTGLVGRVAAMIGVLMVAA 192
>gnl|CDD|235622 PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M;
Reviewed.
Length = 497
Score = 26.7 bits (60), Expect = 6.2
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 36 LTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVF 88
++LL++++ L+ L VLA+ + K Y L + V GVF
Sbjct: 83 ISLLLVVLTALLTPLAVLASWEEIKKRVKF-------YMAALLWLEGGVIGVF 128
>gnl|CDD|216842 pfam02009, Rifin_STEVOR, Rifin/stevor family. Several multicopy
gene families have been described in Plasmodium
falciparum, including the stevor family of subtelomeric
open reading frames and the rif interspersed repetitive
elements. Both families contain three predicted
transmembrane segments. It has been proposed that stevor
and rif are members of a larger superfamily that code
for variant surface antigens.
Length = 290
Score = 26.2 bits (58), Expect = 7.5
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 12/45 (26%)
Query: 35 ILTLLVILIITLIGNLMVLAALYSRRHYRKQIKMSRMYYFILHLS 79
++ +LV+LII LI YR++ KM + +I L+
Sbjct: 257 LIIVLVMLIIYLI------------LRYRRKKKMKKKLQYIKLLN 289
>gnl|CDD|233133 TIGR00801, ncs2, uracil-xanthine permease. The Nucleobase:Cation
Symporter-2 (NCS2) Family (TC 2.A.40) Most of the
functionally characterized members of the NCS2 family
are transporters specific for nucleobases including both
purines and pyrimidines. However, two closely related
rat members of the family, SVCT1 and SVCT2, localized to
different tissues of the body, cotransport L-ascorbate
and Na+ with a high degree of specificity and high
affinity for the vitamin. The NCS2 family appears to be
distantly related to the NCS1 family (TC #2.A.39)
[Transport and binding proteins, Nucleosides, purines
and pyrimidines].
Length = 412
Score = 26.5 bits (59), Expect = 8.0
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 35 ILTLLVILIITL---IGNLMVLAALYSRRHYRKQIKMSRMYYFILHLSIADLVTGVFNVL 91
ILT+L + I++L IG+L A + S R ++ R L +A ++ G+F
Sbjct: 233 ILTMLPVAIVSLVESIGDLTATADV-SGRDLSGDPRLHRGV---LADGLATVLAGLFGGF 288
Query: 92 P 92
P
Sbjct: 289 P 289
>gnl|CDD|197872 smart00780, PIG-X, PIG-X / PBN1. Mammalian PIG-X and yeast PBN1
are essential components of
glycosylphosphatidylinositol-mannosyltransferase I.
These enzymes are involved in the transfer of sugar
molecules.
Length = 203
Score = 25.8 bits (57), Expect = 9.3
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 7 TEIPFPGTQNGTGDPDPDPRDEDLARIEILTLLVILIITLIGNLMVLAALYSR 59
+ P D IE++TLLV+LI G L +L L+ R
Sbjct: 155 YHLNPTPDPGSLEINVPVGDTSDFPVIELVTLLVVLI----GFLYILYKLFRR 203
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 26.2 bits (58), Expect = 9.5
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 36 LTLLVILIITLIGNLMVLAALYSRRHYRK-QIKMSRMY 72
L L+++LI+ L+ ++ L A SR+ R+ + + +
Sbjct: 154 LALILLLILPLLALVLSLLARKSRKLSRRVREALGELN 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.144 0.456
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,693,599
Number of extensions: 814787
Number of successful extensions: 1316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 96
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)